AlfalfaGEDB | Msa0966360

M. sativa cultivar zhongmu-4 / Msa0966360

KEGG: K03671
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009593 GO:0010109 GO:0016491 GO:0016667 GO:0016671 GO:0019222 GO:0031323 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051775 GO:0051776 GO:0055114 GO:0065007
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0966360	XP_003620940.1	86.207	58	8	0	1	58	1	58	3.83e-25	102

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa0966360	0.800603	1.333797e-48	-8.615850e-47
Msa0064550	Msa0966360	0.815127	1.084045e-51	-8.615850e-47
Msa0109490	Msa0966360	0.804999	1.649511e-49	-8.615850e-47
Msa0605250	Msa0966360	0.805290	1.433881e-49	-8.615850e-47
Msa0646340	Msa0966360	0.816850	4.470315e-52	-8.615850e-47
Msa0685890	Msa0966360	0.801128	1.041992e-48	-8.615850e-47
Msa0154270	Msa0966360	0.810372	1.191318e-50	-8.615850e-47
Msa0155610	Msa0966360	0.820514	6.588955e-53	-8.615850e-47
Msa0171920	Msa0966360	0.810652	1.036299e-50	-8.615850e-47
Msa0481490	Msa0966360	0.805230	1.475813e-49	-8.615850e-47
Msa0265580	Msa0966360	0.801060	1.076073e-48	-8.615850e-47
Msa0966360	Msa0968780	0.819580	1.077818e-52	-8.615850e-47
Msa0966360	Msa0984000	0.804408	2.191646e-49	-8.615850e-47
Msa0966360	Msa1080840	0.804411	2.188382e-49	-8.615850e-47
Msa0966360	Msa1082150	0.806679	7.315870e-50	-8.615850e-47
Msa0966360	Msa1118980	0.806886	6.614885e-50	-8.615850e-47
Msa0966360	Msa1281270	0.800493	1.404634e-48	-8.615850e-47
Msa0966360	Msa1320380	0.816188	6.291302e-52	-8.615850e-47
Msa0966360	Msa1394900	0.844707	6.397166e-59	-8.615850e-47
Msa0966360	Msa1420520	0.804868	1.756955e-49	-8.615850e-47
Msa0966360	Msa1447360	0.968569	7.292612e-129	-8.615850e-47
Msa0966360	Msa1459540	0.805040	1.617154e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0966360	MtrunA17_Chr6g0488561	86.207	58	8	0	1	58	1	58	3.52e-29	102

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 12 sgRNAs with CRISPR-Local

Find 20 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACTTGCTTCCTTTCA+AGG	0.304706	6_3:-94552577	Msa0966360:intron
CCCTCTTGGGTGAGAGTGGC+TGG	0.350504	6_3:+94552628	None:intergenic
GGAAGAGAGAAACCCCTCTT+GGG	0.525832	6_3:+94552615	None:intergenic
AGGAAGAGAGAAACCCCTCT+TGG	0.530814	6_3:+94552614	None:intergenic
GAGGTGGAAGGAGATGAAAG+TGG	0.533907	6_3:+94552666	None:intergenic
AAACCCCTCTTGGGTGAGAG+TGG	0.557513	6_3:+94552624	None:intergenic
CCAGCCACTCTCACCCAAGA+GGG	0.560649	6_3:-94552628	Msa0966360:CDS
CTGGAGAGTAGTGAAGAAAG+AGG	0.565133	6_3:+94552647	None:intergenic
GAGAGTAGTGAAGAAAGAGG+TGG	0.607387	6_3:+94552650	None:intergenic
TCCAGCCACTCTCACCCAAG+AGG	0.638518	6_3:-94552629	Msa0966360:CDS
CAGCCACTCTCACCCAAGAG+GGG	0.649078	6_3:-94552627	Msa0966360:CDS
GTAGTGAAGAAAGAGGTGGA+AGG	0.662299	6_3:+94552654	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATAATCACAATAATAAAAA+GGG	+	chr6_3:94552705-94552724	None:intergenic	10.0%
!!	AAATAATCACAATAATAAAA+AGG	+	chr6_3:94552706-94552725	None:intergenic	10.0%
!!	ATAATCACAATAATAAAAAG+GGG	+	chr6_3:94552704-94552723	None:intergenic	15.0%
!	AAAAAAAAAGTGACCTTGAA+AGG	+	chr6_3:94552677-94552696	None:intergenic	25.0%
	AAAACACTTGCTTCCTTTCA+AGG	-	chr6_3:94552661-94552680	Msa0966360:CDS	35.0%
!	GGAAGCAAGTGTTTTCTTCT+GGG	+	chr6_3:94552656-94552675	None:intergenic	40.0%
!	AGGAAGCAAGTGTTTTCTTC+TGG	+	chr6_3:94552657-94552676	None:intergenic	40.0%
	GTAGTGAAGAAAGAGGTGGA+AGG	+	chr6_3:94552587-94552606	None:intergenic	45.0%
	GAGAGTAGTGAAGAAAGAGG+TGG	+	chr6_3:94552591-94552610	None:intergenic	45.0%
	CTGGAGAGTAGTGAAGAAAG+AGG	+	chr6_3:94552594-94552613	None:intergenic	45.0%
!	TGTTTTCTTCTGGGTGGAGA+AGG	+	chr6_3:94552647-94552666	None:intergenic	45.0%
!	AGCAAGTGTTTTCTTCTGGG+TGG	+	chr6_3:94552653-94552672	None:intergenic	45.0%
	GAGGTGGAAGGAGATGAAAG+TGG	+	chr6_3:94552575-94552594	None:intergenic	50.0%
	GGAAGAGAGAAACCCCTCTT+GGG	+	chr6_3:94552626-94552645	None:intergenic	50.0%
	AGGAAGAGAGAAACCCCTCT+TGG	+	chr6_3:94552627-94552646	None:intergenic	50.0%
	AAACCCCTCTTGGGTGAGAG+TGG	+	chr6_3:94552617-94552636	None:intergenic	55.0%
	TCCAGCCACTCTCACCCAAG+AGG	-	chr6_3:94552609-94552628	Msa0966360:CDS	60.0%
	CCAGCCACTCTCACCCAAGA+GGG	-	chr6_3:94552610-94552629	Msa0966360:CDS	60.0%
	CAGCCACTCTCACCCAAGAG+GGG	-	chr6_3:94552611-94552630	Msa0966360:CDS	60.0%
	CCCTCTTGGGTGAGAGTGGC+TGG	+	chr6_3:94552613-94552632	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	94552515	94552745	94552515	ID=Msa0966360;Name=Msa0966360
chr6_3	mRNA	94552515	94552745	94552515	ID=Msa0966360-mRNA-1;Parent=Msa0966360;Name=Msa0966360-mRNA-1;_AED=0.51;_eAED=0.51;_QI=0\|0\|0\|0.5\|0\|0\|2\|0\|60
chr6_3	exon	94552578	94552745	94552578	ID=Msa0966360-mRNA-1:exon:17486;Parent=Msa0966360-mRNA-1
chr6_3	exon	94552515	94552529	94552515	ID=Msa0966360-mRNA-1:exon:17485;Parent=Msa0966360-mRNA-1
chr6_3	CDS	94552578	94552745	94552578	ID=Msa0966360-mRNA-1:cds;Parent=Msa0966360-mRNA-1
chr6_3	CDS	94552515	94552529	94552515	ID=Msa0966360-mRNA-1:cds;Parent=Msa0966360-mRNA-1

Gene Sequence	>Msa0966360 ATGGCACTACATGTTCATAATACTATTCGTTTACACTTTCAATATCAATATCTTCTTCCACTTTCATCTCCTTCCACCTCTTTCTTCACTACTCTCCAGCCACTCTCACCCAAGAGGGGTTTCTCTCTTCCTTCTCCACCCAGAAGAAAACACTTGCTTCCTTTCAAGTTTTTACATGATTAG
Protein sequence	>Msa0966360 MALHVHNTIRLHFQYQYLLPLSSPSTSFFTTLQPLSPKRGFSLPSPPRRKHLLPFKFLHD*