AlfalfaGEDB | Msa0605250

M. sativa cultivar zhongmu-4 / Msa0605250

KEGG: K07399
GO: -
PFAM: PF05140.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605250	XP_013456369.1	96.350	548	19	1	1	547	1	548	0.0	1090

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605250	sp\|Q9XIA4\|CCS1_ARATH	67.093	547	164	4	11	548	5	544	0.0	758

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000780	Msa0605250	0.837693	4.470295e-57	-8.615850e-47
Msa0004340	Msa0605250	0.838471	2.819726e-57	-8.615850e-47
Msa0005690	Msa0605250	0.809584	1.760244e-50	-8.615850e-47
Msa0006050	Msa0605250	0.842386	2.668634e-58	-8.615850e-47
Msa0012380	Msa0605250	0.870421	1.478168e-66	-8.615850e-47
Msa0014410	Msa0605250	0.889864	1.652719e-73	-8.615850e-47
Msa0017130	Msa0605250	0.810109	1.357573e-50	-8.615850e-47
Msa0020630	Msa0605250	0.814330	1.627659e-51	-8.615850e-47
Msa0024900	Msa0605250	0.811668	6.240450e-51	-8.615850e-47
Msa0026110	Msa0605250	0.827026	1.963634e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605250	MtrunA17_Chr4g0034481	96.350	548	19	1	1	547	1	548	0.0	1090

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0605250	AT1G49380.1	67.093	547	164	4	11	548	5	544	0.0	758

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Find 142 sgRNAs with CRISPR-Local

Find 482 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCAGGTTTCTCGCCT+TGG	0.423189	4_2:+51032364	None:intergenic
AAAAGACTCTTCAATTGGAT+GGG	0.516739	4_2:-51029749	Msa0605250:three_prime_UTR
AACATACAAATTGGATGCGA+TGG	0.492806	4_2:-51029679	Msa0605250:three_prime_UTR
AACATTTCTCCAATAGCCAA+AGG	0.619561	4_2:+51033184	None:intergenic
AACGACCCTTTAAGATATGA+TGG	0.540927	4_2:-51031290	Msa0605250:CDS
AACTTCTTGACCACACCATA+AGG	0.476566	4_2:+51033241	None:intergenic
AAGAACCAGAAAGGTCCTTA+TGG	0.425770	4_2:-51033256	Msa0605250:CDS
AAGATATGGGCCTTACAAGA+TGG	0.553885	4_2:-51029945	Msa0605250:CDS
AAGATGATCTGCAAAAGTTT+TGG	0.309305	4_2:+51029644	None:intergenic
AAGCTCCCAATCAACATTGA+CGG	0.512647	4_2:-51030435	Msa0605250:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTCTGTTGAATTTGAACAA+GGG	+	chr4_2:51029602-51029621	None:intergenic	30.0%
AGTTCTGTTGAATTTGAACA+AGG	+	chr4_2:51029603-51029622	None:intergenic	30.0%
GAGAATGATGATATCAACAA+TGG	-	chr4_2:51029746-51029765	Msa0605250:three_prime_UTR	30.0%
AATGACTAAGATATGTTTGG+TGG	+	chr4_2:51030542-51030561	None:intergenic	30.0%
TAAAGACAAATTTCTATGGC+AGG	-	chr4_2:51030645-51030664	Msa0605250:intron	30.0%
CAAGTAAAAAATCCTAACAC+AGG	+	chr4_2:51030732-51030751	None:intergenic	30.0%
AATACATGTGATCAAAACCA+AGG	+	chr4_2:51030770-51030789	None:intergenic	30.0%
ACCTATATTTCTTGCAATGT+TGG	-	chr4_2:51030794-51030813	Msa0605250:intron	30.0%
CACTCATCAAGATTTCAAAA+AGG	-	chr4_2:51030865-51030884	Msa0605250:intron	30.0%
GGATTATAGGTATTCTTGAA+AGG	-	chr4_2:51031231-51031250	Msa0605250:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	51029483	51033583	51029483	ID=Msa0605250;Name=Msa0605250
chr4_2	mRNA	51029483	51033583	51029483	ID=Msa0605250-mRNA-1;Parent=Msa0605250;Name=Msa0605250-mRNA-1;_AED=0.10;_eAED=0.10;_QI=50\|1\|1\|1\|0.87\|0.77\|9\|303\|548
chr4_2	exon	51029483	51029578	51029483	ID=Msa0605250-mRNA-1:exon:12178;Parent=Msa0605250-mRNA-1
chr4_2	exon	51029599	51029964	51029599	ID=Msa0605250-mRNA-1:exon:12177;Parent=Msa0605250-mRNA-1
chr4_2	exon	51030203	51030286	51030203	ID=Msa0605250-mRNA-1:exon:12176;Parent=Msa0605250-mRNA-1
chr4_2	exon	51030383	51030539	51030383	ID=Msa0605250-mRNA-1:exon:12175;Parent=Msa0605250-mRNA-1
chr4_2	exon	51031122	51031387	51031122	ID=Msa0605250-mRNA-1:exon:12174;Parent=Msa0605250-mRNA-1
chr4_2	exon	51031554	51031826	51031554	ID=Msa0605250-mRNA-1:exon:12173;Parent=Msa0605250-mRNA-1
chr4_2	exon	51031983	51032094	51031983	ID=Msa0605250-mRNA-1:exon:12172;Parent=Msa0605250-mRNA-1
chr4_2	exon	51032180	51032399	51032180	ID=Msa0605250-mRNA-1:exon:12171;Parent=Msa0605250-mRNA-1
chr4_2	exon	51033158	51033583	51033158	ID=Msa0605250-mRNA-1:exon:12170;Parent=Msa0605250-mRNA-1
chr4_2	five_prime_UTR	51033534	51033583	51033534	ID=Msa0605250-mRNA-1:five_prime_utr;Parent=Msa0605250-mRNA-1
chr4_2	CDS	51033158	51033533	51033158	ID=Msa0605250-mRNA-1:cds;Parent=Msa0605250-mRNA-1
chr4_2	CDS	51032180	51032399	51032180	ID=Msa0605250-mRNA-1:cds;Parent=Msa0605250-mRNA-1
chr4_2	CDS	51031983	51032094	51031983	ID=Msa0605250-mRNA-1:cds;Parent=Msa0605250-mRNA-1
chr4_2	CDS	51031554	51031826	51031554	ID=Msa0605250-mRNA-1:cds;Parent=Msa0605250-mRNA-1
chr4_2	CDS	51031122	51031387	51031122	ID=Msa0605250-mRNA-1:cds;Parent=Msa0605250-mRNA-1
chr4_2	CDS	51030383	51030539	51030383	ID=Msa0605250-mRNA-1:cds;Parent=Msa0605250-mRNA-1
chr4_2	CDS	51030203	51030286	51030203	ID=Msa0605250-mRNA-1:cds;Parent=Msa0605250-mRNA-1
chr4_2	CDS	51029806	51029964	51029806	ID=Msa0605250-mRNA-1:cds;Parent=Msa0605250-mRNA-1
chr4_2	three_prime_UTR	51029599	51029805	51029599	ID=Msa0605250-mRNA-1:three_prime_utr;Parent=Msa0605250-mRNA-1
chr4_2	three_prime_UTR	51029483	51029578	51029483	ID=Msa0605250-mRNA-1:three_prime_utr;Parent=Msa0605250-mRNA-1

Gene Sequence

>Msa0605250

ATGTGTCACATGATGTCTTTGAGGACTCCTATGAATCAATGTCTTCTCAAAGTTCCCACTTTTCATCCCTTGTTCAAATTCAACAGAACTCATACTCATAATTACACCCTCTCATTCACCATCAACTGCAACCTCAAAAACAAGGGAAAGAATAATAACTTGTTGTCACAGAAGATTGTTTTATCAGAATCTTCTCCACCACCACTCACACAGGAGAATGATGATATCAACAATGGAAATGTTCCAGCAAGCTCAAAGAACCAGAAAGGTCCTTATGGTGTGGTCAAGAAGTTGAGTAAAAAGGTGTTGCAGATTCTCTCTAATTTGCCTTTGGCTATTGGAGAAATGTTCACTATTGCTTTTTTAATGGGTTTGGGCACTTTTATTGACCAAGGCGAGAAACCTGAGTTTTATTTCCAGAATTACCCTGAAGATCATCCTGTGTTAGGATTTTTTACTTGGAGATGGATTTTCTTCCTTGGTTTTGATCACATGTATTCAGCACCTATATTTCTTGCAATGTTGGCCCTTCTTGGTGCTTCCCTTATAGCCTGCACTTACACAACACAACTTCCACTCATCAAGATTTCAAAAAGATGGTCATTTATGCACTCTGCCGAGGTTATACGTAAGCAAGAGTTTTCAGAATCATTGCCAAGAGCATCAATCCAAGACGTCGGTACTATATTAATGGGAGCTGGATATGAGGTATTCTTGAAAGGACCAACTTTGTATGCTTTTCGTGGACTTGCCGGTCGGCTAGCCCCTGTTGGCGTTCATATAGCACTGCTGTTGATAATGGGTGGAGGAACTTTAAGTGCGGCAGGGAGTTTTAAAGGTTCAGTCACTGTGCCTCAGGGGCTGAATTTTGTTGTAGGAGATGTTCTCGGTCCTACCGGCTTTCTTTCCTTTCCAACTGATGCATTTAATACAGAGATTCACGTCAACAGATTCTCTATGGATTATTATGAAAGTGGAGAGGTTTCACAGTTTCACACCGATCTTTCCCTCTTGAACATGGATGGAAAAGAAGTAATGAGGAAAACAATTAGTGTAAACGACCCTTTAAGATATGATGGTATCACCATATACCAGACGGATTGGAGTATTTCAGCTCTGCAAATTCTCAAGGACAATGAAGGACCTTATAACTTGGCTATGGCACCTCTAAAGATCAATGGAGATAAGAAACTTTATGGTACTTTTCTACCGGTTGGAGATGTTAACTCTCCTGATGTTAAAGGAATATCTATGCTTGCTCGTGACCTGCAGTCAATTGTCCTTTATGATAAGGAAGGGAAATTTGCAGGAGTTAGACGACCTAATTCAAAGCTCCCAATCAACATTGACGGCTCAGAAATTGTCGTTGTGGATGCAATAGGCAGTAGTGGCTTGGACTTGAAGACTGATCCTGGCGTGCCAGTTGTATATGCTGGATTTGGTGCTCTCATGCTCACTACTTGCATCAGCTATTTATCTCATTCACAGATATGGGCCTTACAAGATGGAACAACAGTCGTTATTGGAGGGAAGACTAACAGAGCTAAGTTAGAGTTTCCGGACGAGATGAACCTCTTGCTTGACAAAATCCCTGAAATAGTTGAATCATCATCTCTATCTAAGAAAACTGATAGCATGGTTAGCTAG

Protein sequence

>Msa0605250

MCHMMSLRTPMNQCLLKVPTFHPLFKFNRTHTHNYTLSFTINCNLKNKGKNNNLLSQKIVLSESSPPPLTQENDDINNGNVPASSKNQKGPYGVVKKLSKKVLQILSNLPLAIGEMFTIAFLMGLGTFIDQGEKPEFYFQNYPEDHPVLGFFTWRWIFFLGFDHMYSAPIFLAMLALLGASLIACTYTTQLPLIKISKRWSFMHSAEVIRKQEFSESLPRASIQDVGTILMGAGYEVFLKGPTLYAFRGLAGRLAPVGVHIALLLIMGGGTLSAAGSFKGSVTVPQGLNFVVGDVLGPTGFLSFPTDAFNTEIHVNRFSMDYYESGEVSQFHTDLSLLNMDGKEVMRKTISVNDPLRYDGITIYQTDWSISALQILKDNEGPYNLAMAPLKINGDKKLYGTFLPVGDVNSPDVKGISMLARDLQSIVLYDKEGKFAGVRRPNSKLPINIDGSEIVVVDAIGSSGLDLKTDPGVPVVYAGFGALMLTTCISYLSHSQIWALQDGTTVVIGGKTNRAKLEFPDEMNLLLDKIPEIVESSSLSKKTDSMVS*