AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0000780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000780 MtrunA17_Chr7g0267571 92.901 324 17 1 1 324 1 318 0.0 617
Msa0000780 MtrunA17_Chr1g0177101 56.688 314 112 8 12 319 11 306 1.21e-105 311
Msa0000780 MtrunA17_Chr1g0181111 38.246 285 141 7 27 297 12 275 2.21e-46 158
Msa0000780 MtrunA17_Chr3g0087481 32.982 285 140 5 10 294 2 235 5.50e-42 145
Msa0000780 MtrunA17_Chr3g0116631 35.636 275 142 9 41 297 28 285 2.47e-41 145
Msa0000780 MtrunA17_Chr4g0058151 39.560 182 101 2 116 297 123 295 2.29e-40 143
Msa0000780 MtrunA17_Chr4g0058151 46.341 82 44 0 219 300 123 204 4.97e-15 74.3
Msa0000780 MtrunA17_Chr1g0168601 37.576 165 91 1 133 297 80 232 4.46e-36 130
Msa0000780 MtrunA17_Chr1g0168601 35.417 96 59 1 97 192 138 230 3.41e-11 62.4
Msa0000780 MtrunA17_Chr5g0411091 33.333 183 113 4 117 298 98 272 2.13e-25 103
Msa0000780 MtrunA17_Chr1g0179701 32.044 181 118 3 117 297 243 418 9.73e-20 89.7
Msa0000780 MtrunA17_Chr1g0179701 26.957 230 149 5 62 289 8 220 5.55e-19 87.4
Msa0000780 MtrunA17_Chr1g0179701 26.596 188 117 5 115 298 150 320 2.27e-11 64.7
Msa0000780 MtrunA17_Chr2g0328791 26.178 191 126 3 110 297 10 188 1.46e-19 89.0
Msa0000780 MtrunA17_Chr4g0074711 26.733 202 131 4 100 297 59 247 1.80e-18 85.5
Msa0000780 MtrunA17_Chr3g0110211 30.168 179 106 4 118 294 28 189 2.06e-18 85.1
Msa0000780 MtrunA17_Chr7g0265341 30.387 181 119 4 117 294 251 427 8.67e-18 84.3
Msa0000780 MtrunA17_Chr7g0265341 27.513 189 118 3 117 302 72 244 7.19e-16 78.6
Msa0000780 MtrunA17_Chr3g0132451 28.351 194 121 5 105 291 74 256 1.08e-17 82.0
Msa0000780 MtrunA17_Chr3g0119311 36.559 93 59 0 219 311 37 129 1.08e-17 78.2
Msa0000780 MtrunA17_Chr3g0119311 39.024 82 49 1 116 196 37 118 4.57e-12 62.8
Msa0000780 MtrunA17_Chr2g0288251 27.179 195 129 4 106 297 51 235 1.62e-17 82.8
Msa0000780 MtrunA17_Chr7g0219021 43.529 85 48 0 216 300 38 122 5.04e-17 79.3
Msa0000780 MtrunA17_Chr7g0219021 35.294 85 54 1 106 190 32 115 8.23e-13 67.4
Msa0000780 MtrunA17_Chr4g0044541 28.235 170 98 3 117 282 36 185 2.34e-16 79.7
Msa0000780 MtrunA17_Chr4g0044541 31.319 182 116 6 117 294 215 391 4.92e-13 69.7
Msa0000780 MtrunA17_Chr4g0045221 27.461 193 124 4 117 303 118 300 1.38e-15 77.0
Msa0000780 MtrunA17_Chr3g0133651 26.500 200 113 4 113 299 91 269 1.46e-15 77.0
Msa0000780 MtrunA17_Chr3g0134141 26.554 177 106 3 117 289 26 182 1.96e-15 77.0
Msa0000780 MtrunA17_Chr3g0134141 32.124 193 121 7 101 289 190 376 3.71e-11 63.9
Msa0000780 MtrunA17_Chr4g0035051 37.500 80 50 0 215 294 5 84 3.67e-15 70.9
Msa0000780 MtrunA17_Chr1g0153871 26.344 186 122 4 117 299 99 272 1.09e-14 74.3
Msa0000780 MtrunA17_Chr4g0035001 37.500 80 50 0 215 294 3 82 1.70e-14 70.1
Msa0000780 MtrunA17_Chr4g0070231 28.302 212 115 8 116 303 132 330 2.02e-14 73.6
Msa0000780 MtrunA17_Chr4g0070231 25.581 215 134 4 117 323 48 244 4.45e-13 69.3
Msa0000780 MtrunA17_Chr3g0139111 25.822 213 128 5 117 308 147 350 2.62e-14 73.2
Msa0000780 MtrunA17_Chr3g0139111 26.404 178 113 2 117 294 62 221 9.84e-14 71.6
Msa0000780 MtrunA17_Chr2g0278661 42.105 76 44 0 219 294 8 83 3.01e-14 71.2
Msa0000780 MtrunA17_Chr1g0153181 30.457 197 130 5 101 294 198 390 3.60e-14 73.2
Msa0000780 MtrunA17_Chr1g0153181 25.714 175 106 3 117 287 34 188 5.79e-14 72.8
Msa0000780 MtrunA17_Chr4g0035031 39.759 83 50 0 212 294 2 84 4.52e-14 69.7
Msa0000780 MtrunA17_Chr1g0201151 26.923 208 125 5 117 316 32 220 5.47e-14 72.8
Msa0000780 MtrunA17_Chr1g0201151 27.320 194 109 6 117 294 211 388 1.90e-11 65.1
Msa0000780 MtrunA17_Chr3g0121631 41.463 82 47 1 216 297 34 114 6.64e-14 68.2
Msa0000780 MtrunA17_Chr4g0050781 38.961 77 47 0 218 294 7 83 1.01e-13 69.3
Msa0000780 MtrunA17_Chr8g0344491 28.638 213 122 6 117 308 149 352 1.12e-13 71.2
Msa0000780 MtrunA17_Chr8g0344491 26.291 213 131 5 117 321 64 258 6.39e-12 65.9
Msa0000780 MtrunA17_Chr2g0290191 27.411 197 128 6 113 302 2 190 1.52e-13 71.2
Msa0000780 MtrunA17_Chr4g0061451 40.741 81 47 1 116 195 43 123 1.56e-13 69.7
Msa0000780 MtrunA17_Chr4g0061451 37.975 79 49 0 219 297 43 121 2.24e-13 69.3
Msa0000780 MtrunA17_Chr0c09g0493511 30.435 184 116 6 117 294 120 297 3.46e-13 70.1
Msa0000780 MtrunA17_Chr7g0219031 46.154 65 35 0 216 280 38 102 4.18e-13 65.1
Msa0000780 MtrunA17_Chr4g0068631 27.381 168 107 5 116 282 89 242 7.25e-13 69.3
Msa0000780 MtrunA17_Chr6g0465691 29.891 184 117 6 117 294 120 297 1.07e-12 68.6
Msa0000780 MtrunA17_Chr6g0465691 28.571 168 97 6 117 281 33 180 3.28e-11 63.9
Msa0000780 MtrunA17_Chr1g0201001 38.554 83 51 0 117 199 31 113 1.07e-12 68.6
Msa0000780 MtrunA17_Chr6g0466501 29.891 184 117 6 117 294 202 379 1.51e-12 68.2
Msa0000780 MtrunA17_Chr6g0449481 24.868 189 127 4 115 303 45 218 1.63e-12 67.8
Msa0000780 MtrunA17_Chr6g0465751 24.747 198 128 5 111 303 16 197 2.54e-12 67.8
Msa0000780 MtrunA17_Chr6g0465751 27.513 189 115 5 117 294 202 379 9.29e-12 65.9
Msa0000780 MtrunA17_Chr8g0383661 28.108 185 121 5 113 292 200 377 3.94e-12 67.0
Msa0000780 MtrunA17_Chr3g0086861 37.500 88 54 1 211 297 36 123 6.31e-12 66.2
Msa0000780 MtrunA17_Chr3g0086861 38.667 75 46 0 116 190 45 119 4.07e-11 63.5
Msa0000780 MtrunA17_Chr3g0101061 27.885 208 126 8 113 308 38 233 8.81e-12 65.9
Msa0000780 MtrunA17_Chr6g0466451 26.943 193 111 5 117 294 107 284 9.08e-12 65.9
Msa0000780 MtrunA17_Chr6g0465631 26.943 193 111 5 117 294 107 284 9.16e-12 65.9
Msa0000780 MtrunA17_Chr1g0210241 36.585 82 52 0 218 299 7 88 1.09e-11 64.3
Msa0000780 MtrunA17_Chr5g0429941 40.000 90 54 0 117 206 18 107 1.42e-11 63.9
Msa0000780 MtrunA17_Chr4g0050441 39.362 94 57 0 111 204 12 105 1.65e-11 63.9
Msa0000780 MtrunA17_Chr1g0190211 31.132 106 72 1 218 323 132 236 2.78e-11 62.8
Msa0000780 MtrunA17_Chr7g0266751 34.177 79 52 0 114 192 31 109 8.06e-11 59.3
Msa0000780 MtrunA17_Chr6g0481071 41.111 90 50 1 116 205 96 182 9.70e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000780 AT3G52380.1 64.651 215 72 2 113 323 114 328 1.03e-99 297
Msa0000780 AT2G37220.1 39.583 192 106 2 116 297 92 283 2.33e-43 151
Msa0000780 AT1G60000.1 38.462 182 101 1 116 297 86 256 6.99e-42 146
Msa0000780 AT1G60000.1 38.384 99 59 1 97 195 161 257 9.02e-14 70.5
Msa0000780 AT5G50250.1 34.074 270 147 8 39 297 37 286 2.29e-38 138
Msa0000780 AT2G35410.1 34.586 266 147 6 41 294 21 271 1.00e-37 137
Msa0000780 AT3G52150.2 37.755 196 116 2 103 294 60 253 2.56e-37 134
Msa0000780 AT3G52150.1 37.755 196 116 2 103 294 60 253 2.56e-37 134
Msa0000780 AT4G24770.1 38.462 182 103 2 116 297 151 323 3.96e-37 135
Msa0000780 AT4G24770.1 49.367 79 40 0 114 192 243 321 4.52e-18 84.0
Msa0000780 AT4G24770.2 38.462 182 103 2 116 297 151 323 3.96e-37 135
Msa0000780 AT4G24770.2 49.367 79 40 0 114 192 243 321 4.52e-18 84.0
Msa0000780 AT1G01080.1 37.931 174 102 3 117 287 110 280 6.91e-28 110
Msa0000780 AT1G01080.2 38.286 175 101 4 117 287 110 281 4.07e-27 108
Msa0000780 AT1G01080.3 38.095 168 98 3 117 281 110 274 3.81e-26 105
Msa0000780 AT3G16380.1 32.995 197 122 5 102 294 189 379 3.68e-22 97.4
Msa0000780 AT3G16380.1 29.714 175 109 4 115 289 21 181 6.61e-14 72.8
Msa0000780 AT1G11650.1 28.505 214 136 5 86 297 37 235 3.34e-20 89.7
Msa0000780 AT1G11650.2 28.505 214 136 5 86 297 37 235 2.27e-19 88.6
Msa0000780 AT3G53460.1 43.750 80 45 0 218 297 257 336 5.47e-19 86.7
Msa0000780 AT3G53460.1 47.253 91 47 1 116 205 100 190 2.63e-15 76.3
Msa0000780 AT3G53460.1 40.964 83 47 1 116 196 258 340 2.58e-13 70.1
Msa0000780 AT3G53460.1 42.718 103 48 3 207 308 92 184 2.03e-11 64.7
Msa0000780 AT3G53460.3 43.750 80 45 0 218 297 257 336 5.47e-19 86.7
Msa0000780 AT3G53460.3 47.253 91 47 1 116 205 100 190 2.63e-15 76.3
Msa0000780 AT3G53460.3 40.964 83 47 1 116 196 258 340 2.58e-13 70.1
Msa0000780 AT3G53460.3 42.718 103 48 3 207 308 92 184 2.03e-11 64.7
Msa0000780 AT3G53460.2 43.750 80 45 0 218 297 257 336 5.47e-19 86.7
Msa0000780 AT3G53460.2 47.253 91 47 1 116 205 100 190 2.63e-15 76.3
Msa0000780 AT3G53460.2 40.964 83 47 1 116 196 258 340 2.58e-13 70.1
Msa0000780 AT3G53460.2 42.718 103 48 3 207 308 92 184 2.03e-11 64.7
Msa0000780 AT3G53460.4 43.750 80 45 0 218 297 278 357 7.44e-19 86.7
Msa0000780 AT3G53460.4 40.964 83 47 1 116 196 279 361 3.26e-13 70.1
Msa0000780 AT3G53460.4 53.968 63 29 0 116 178 100 162 9.74e-13 68.6
Msa0000780 AT5G19350.1 26.000 200 136 3 99 297 8 196 1.87e-18 85.9
Msa0000780 AT5G19350.2 26.000 200 136 3 99 297 8 196 2.25e-18 85.5
Msa0000780 AT5G06210.1 43.902 82 46 0 114 195 33 114 4.82e-18 80.1
Msa0000780 AT5G54900.1 27.885 208 137 5 106 310 51 248 1.02e-17 83.6
Msa0000780 AT4G09040.1 26.182 275 165 8 18 291 26 263 1.11e-17 82.4
Msa0000780 AT2G36660.1 28.571 182 127 3 117 297 203 382 7.31e-17 81.6
Msa0000780 AT4G09040.2 27.684 177 119 4 116 291 35 203 7.89e-17 79.0
Msa0000780 AT4G13850.3 47.059 85 43 1 219 303 36 118 8.33e-17 76.6
Msa0000780 AT4G13850.2 47.059 85 43 1 219 303 36 118 1.03e-16 76.6
Msa0000780 AT4G13850.1 47.059 85 43 1 219 303 36 118 1.16e-16 76.6
Msa0000780 AT1G49760.1 30.723 166 99 3 117 282 47 196 2.23e-16 80.5
Msa0000780 AT1G49760.1 31.319 182 116 6 117 294 226 402 4.52e-13 70.5
Msa0000780 AT1G49760.1 29.940 167 104 5 115 281 133 286 3.08e-12 67.8
Msa0000780 AT1G49760.2 30.723 166 99 3 117 282 47 196 2.23e-16 80.5
Msa0000780 AT1G49760.2 31.319 182 116 6 117 294 226 402 4.52e-13 70.5
Msa0000780 AT1G49760.2 29.940 167 104 5 115 281 133 286 3.08e-12 67.8
Msa0000780 AT4G13850.4 46.835 79 42 0 219 297 36 114 3.28e-16 74.3
Msa0000780 AT4G13850.4 37.838 74 46 0 116 189 36 109 8.44e-11 59.3
Msa0000780 AT2G18510.1 27.322 183 114 4 117 297 27 192 5.91e-16 78.2
Msa0000780 AT3G19130.1 27.368 190 122 4 112 297 105 282 6.32e-16 78.6
Msa0000780 AT1G54080.1 30.899 178 105 4 117 294 65 224 8.41e-16 78.2
Msa0000780 AT1G54080.1 29.730 185 92 7 117 276 150 321 2.23e-11 64.7
Msa0000780 AT4G34110.1 30.120 166 100 3 117 282 38 187 1.05e-15 78.2
Msa0000780 AT4G34110.1 27.485 171 105 4 114 281 123 277 7.92e-13 69.7
Msa0000780 AT4G34110.1 28.022 182 122 5 117 294 217 393 2.56e-11 65.1
Msa0000780 AT3G08000.1 36.458 96 61 0 219 314 42 137 1.64e-15 72.8
Msa0000780 AT4G39260.3 39.024 82 50 0 218 299 6 87 1.88e-15 71.2
Msa0000780 AT3G23830.2 41.463 82 48 0 219 300 36 117 3.46e-15 72.0
Msa0000780 AT3G23830.2 36.842 76 48 0 116 191 36 111 5.24e-11 60.1
Msa0000780 AT3G23830.1 41.463 82 48 0 219 300 36 117 3.46e-15 72.0
Msa0000780 AT3G23830.1 36.842 76 48 0 116 191 36 111 5.24e-11 60.1
Msa0000780 AT4G39260.2 38.462 78 48 0 217 294 5 82 3.93e-15 71.2
Msa0000780 AT5G40490.1 23.318 223 152 5 75 297 6 209 6.03e-15 75.5
Msa0000780 AT2G23350.1 27.879 165 103 2 117 281 48 196 8.12e-15 75.5
Msa0000780 AT2G23350.1 31.522 184 113 6 117 294 227 403 5.19e-13 70.1
Msa0000780 AT2G23350.1 31.138 167 102 5 115 281 134 287 7.48e-13 69.7
Msa0000780 AT4G39260.1 38.462 78 48 0 217 294 5 82 1.05e-14 71.2
Msa0000780 AT1G47490.2 27.419 186 119 5 117 297 103 277 1.21e-14 73.9
Msa0000780 AT1G22760.1 28.177 181 109 5 109 284 130 294 1.73e-14 74.7
Msa0000780 AT1G22760.1 28.261 184 119 5 117 294 231 407 2.33e-11 65.1
Msa0000780 AT1G49600.3 29.255 188 121 4 112 297 116 293 2.00e-14 73.9
Msa0000780 AT1G49600.2 29.255 188 121 4 112 297 116 293 2.00e-14 73.9
Msa0000780 AT2G21660.2 37.500 80 50 0 215 294 5 84 2.06e-14 70.5
Msa0000780 AT2G21660.2 41.892 74 43 0 116 189 9 82 2.12e-11 62.0
Msa0000780 AT3G14100.1 28.788 198 123 4 117 314 61 240 2.09e-14 73.9
Msa0000780 AT1G49600.1 30.000 190 117 5 112 297 116 293 2.28e-14 73.9
Msa0000780 AT2G21660.1 37.500 80 50 0 215 294 5 84 2.93e-14 70.5
Msa0000780 AT2G21660.1 41.892 74 43 0 116 189 9 82 2.91e-11 62.0
Msa0000780 AT4G26650.1 27.363 201 118 6 104 285 4 195 3.58e-14 73.2
Msa0000780 AT1G54080.2 30.220 182 105 5 117 294 65 228 5.03e-14 72.8
Msa0000780 AT1G47490.1 27.273 187 118 5 117 297 103 277 8.10e-14 72.0
Msa0000780 AT5G61030.2 43.421 76 43 0 116 191 41 116 8.80e-14 71.2
Msa0000780 AT5G61030.2 36.585 82 52 0 216 297 38 119 6.16e-13 68.9
Msa0000780 AT5G61030.1 43.421 76 43 0 116 191 41 116 8.80e-14 71.2
Msa0000780 AT5G61030.1 36.585 82 52 0 216 297 38 119 6.16e-13 68.9
Msa0000780 AT4G13860.1 45.455 77 42 0 114 190 2 78 1.42e-13 65.9
Msa0000780 AT4G26650.2 27.000 200 118 6 105 285 2 192 2.02e-13 71.2
Msa0000780 AT1G17640.2 29.630 162 96 3 115 273 66 212 2.66e-13 70.5
Msa0000780 AT1G17640.1 29.630 162 96 3 115 273 66 212 2.66e-13 70.5
Msa0000780 AT1G17640.3 29.630 162 96 3 115 273 66 212 2.66e-13 70.5
Msa0000780 AT1G34140.1 29.843 191 114 5 117 297 121 301 3.50e-13 70.1
Msa0000780 AT1G34140.1 29.444 180 111 5 115 294 31 194 9.36e-12 65.9
Msa0000780 AT1G47500.2 26.738 187 119 5 117 297 105 279 3.90e-13 69.3
Msa0000780 AT1G17370.1 28.090 178 110 3 117 294 56 215 4.53e-13 70.1
Msa0000780 AT1G17370.2 28.090 178 110 3 117 294 56 215 5.02e-13 69.7
Msa0000780 AT3G26420.1 38.750 80 49 0 215 294 4 83 5.95e-13 68.2
Msa0000780 AT1G71770.1 29.787 188 111 5 117 294 241 417 9.69e-13 69.3
Msa0000780 AT1G71770.1 27.108 166 104 4 117 282 61 209 7.86e-11 63.5
Msa0000780 AT1G71770.2 29.787 188 111 5 117 294 241 417 9.69e-13 69.3
Msa0000780 AT1G71770.2 27.108 166 104 4 117 282 61 209 7.86e-11 63.5
Msa0000780 AT1G47500.1 26.738 187 119 5 117 297 105 279 1.02e-12 68.9
Msa0000780 AT5G19960.1 34.783 115 72 2 110 224 2 113 1.17e-12 68.2
Msa0000780 AT4G27000.1 23.153 203 138 4 117 316 82 269 2.07e-12 67.8
Msa0000780 AT1G74230.1 44.000 75 41 1 116 190 35 108 3.01e-12 66.6
Msa0000780 AT1G74230.1 37.975 79 48 1 216 294 32 109 6.35e-11 62.8
Msa0000780 AT5G09880.1 25.366 205 140 4 95 298 154 346 3.86e-12 67.4
Msa0000780 AT1G71800.1 38.554 83 51 0 117 199 11 93 4.68e-12 67.0
Msa0000780 AT3G13224.1 25.294 170 114 4 115 284 19 175 8.77e-12 64.3
Msa0000780 AT5G55550.2 25.269 186 120 5 113 285 4 183 1.06e-11 65.9
Msa0000780 AT5G55550.3 25.269 186 120 5 113 285 4 183 1.06e-11 65.9
Msa0000780 AT5G55550.6 25.269 186 120 5 113 285 4 183 1.06e-11 65.9
Msa0000780 AT5G55550.11 25.269 186 120 5 113 285 4 183 1.06e-11 65.9
Msa0000780 AT3G07810.2 28.743 167 112 4 113 276 4 166 1.31e-11 65.9
Msa0000780 AT3G07810.1 28.743 167 112 4 113 276 4 166 1.37e-11 65.5
Msa0000780 AT5G55550.5 25.269 186 120 5 113 285 4 183 1.47e-11 65.5
Msa0000780 AT5G55550.4 25.269 186 120 5 113 285 4 183 1.47e-11 65.5
Msa0000780 AT5G55550.9 25.269 186 120 5 113 285 4 183 1.47e-11 65.5
Msa0000780 AT5G55550.7 25.269 186 120 5 113 285 4 183 1.47e-11 65.5
Msa0000780 AT5G55550.1 25.269 186 120 5 113 285 4 183 1.47e-11 65.5
Msa0000780 AT2G16940.5 25.116 215 146 5 79 292 17 217 1.69e-11 65.1
Msa0000780 AT2G16940.4 25.116 215 146 5 79 292 17 217 1.69e-11 65.1
Msa0000780 AT5G64200.2 39.583 96 58 0 111 206 12 107 2.09e-11 64.3
Msa0000780 AT5G64200.1 39.583 96 58 0 111 206 12 107 2.09e-11 64.3
Msa0000780 AT5G47320.1 38.372 86 51 1 219 304 32 115 4.27e-11 62.0
Msa0000780 AT4G39260.4 38.095 63 39 0 218 280 6 68 4.52e-11 59.3
Msa0000780 AT3G13224.2 24.742 194 125 4 115 303 19 196 7.80e-11 62.8

Find 112 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTGAGATTGAAGGGTTTA+TGG 0.179399 1_1:-2084064 None:intergenic
CCATTTCACTACTCAATTCT+TGG 0.181510 1_1:+2083903 Msa0000780:five_prime_UTR
TTTGGTTTATCAGAGGTTTC+TGG 0.183455 1_1:-2084227 None:intergenic
CCGGCCGTTGCGATTGAATT+TGG 0.193724 1_1:+2085664 Msa0000780:CDS
TGCTGAACAGCCAGGCTTAC+TGG 0.195504 1_1:+2085409 Msa0000780:CDS
AATGGAAGATCTCGGGGTTT+TGG 0.242272 1_1:+2085458 Msa0000780:CDS
AGGGGTTGATGTCAATTATA+TGG 0.280558 1_1:+2085921 Msa0000780:three_prime_UTR
TTCTGTTCTTCATCTTGCTT+TGG 0.296823 1_1:-2084245 None:intergenic
CAGTCCCCAACCAAGGTTTC+CGG 0.310988 1_1:-2085360 None:intergenic
TTCAATGACTTCTTCACAAT+TGG 0.314912 1_1:+2084319 Msa0000780:CDS
TTCTTCAAGTTGGGAAACTA+TGG 0.330220 1_1:-2084180 None:intergenic
ATTGAAGGGTTTATGGGAAA+TGG 0.332412 1_1:-2084057 None:intergenic
TGATAGATAATATAACTTAT+AGG 0.334049 1_1:-2085839 None:intergenic
TGTACTTACCACACCGTTCA+TGG 0.342393 1_1:-2085528 None:intergenic
ACTAACCTTTCACCTCCTTT+TGG 0.342769 1_1:-2085275 None:intergenic
CCAAGAATTGAGTAGTGAAA+TGG 0.346997 1_1:-2083903 None:intergenic
CTGGTTCTGGTTCTTCAAGT+TGG 0.348111 1_1:-2084190 None:intergenic
AGTTGTGAGATGTATCTATA+AGG 0.353962 1_1:+2085901 Msa0000780:three_prime_UTR
GGTGAGATTGAAGGGTTTAT+GGG 0.357189 1_1:-2084063 None:intergenic
TGGTTCTGGTTCTTCAAGTT+GGG 0.361409 1_1:-2084189 None:intergenic
GAAGCAATTCGAATGTTTGA+TGG 0.364675 1_1:+2084610 Msa0000780:CDS
TATACACTAACTAGACTTTC+CGG 0.375066 1_1:+2085877 Msa0000780:three_prime_UTR
TTGAAGGGTTTATGGGAAAT+GGG 0.380980 1_1:-2084056 None:intergenic
GTGGCATCAATTGTTGAGTT+GGG 0.386950 1_1:-2083865 None:intergenic
ATTGAAACTTTGAGACTTGA+GGG 0.394912 1_1:-2084084 None:intergenic
GAGTCTTCCAGCATCGTCTA+AGG 0.404520 1_1:-2084276 None:intergenic
GTTGTGAGATGTATCTATAA+GGG 0.411194 1_1:+2085902 Msa0000780:three_prime_UTR
ATCTATCAAACTAGTCATAC+TGG 0.411868 1_1:+2085854 Msa0000780:three_prime_UTR
GGAGGTGAAAGGTTAGTAAT+GGG 0.413296 1_1:+2085281 Msa0000780:CDS
AATGGGTCTTTGAGGGAAGT+TGG 0.413952 1_1:-2084039 None:intergenic
TATGGGAAATGGGTCTTTGA+GGG 0.415795 1_1:-2084046 None:intergenic
TATCTTTGTCACCTATCAAA+TGG 0.420814 1_1:+2083836 Msa0000780:five_prime_UTR
AGACTTGAGGGTGAGATTGA+AGG 0.426724 1_1:-2084072 None:intergenic
AAATGATAACCTTCTCTTGA+GGG 0.434451 1_1:+2086014 Msa0000780:three_prime_UTR
GAAGGGAAGGAAAGCAATCA+AGG 0.435297 1_1:+2083775 None:intergenic
GACTTGAGGGTGAGATTGAA+GGG 0.441582 1_1:-2084071 None:intergenic
GCTGAACAGCCAGGCTTACT+GGG 0.446466 1_1:+2085410 Msa0000780:CDS
TTATGGGAAATGGGTCTTTG+AGG 0.453800 1_1:-2084047 None:intergenic
CAAGAATTGAGTAGTGAAAT+GGG 0.457008 1_1:-2083902 None:intergenic
CTATGCCGGAAACCTTGGTT+GGG 0.458422 1_1:+2085355 Msa0000780:CDS
GTTGGTGGTGGTGAGAGAAA+TGG 0.468222 1_1:-2084021 None:intergenic
TCTTTGAGGGAAGTTGGTGG+TGG 0.468331 1_1:-2084033 None:intergenic
TTTGATAGGTGACAAAGATA+AGG 0.469659 1_1:-2083833 None:intergenic
AAGATCTATGCCGGAAACCT+TGG 0.470085 1_1:+2085350 Msa0000780:CDS
ATATAACTTATAGGAGGAAA+AGG 0.471261 1_1:-2085830 None:intergenic
TCTTCAATTACTGGAGGAGA+TGG 0.482825 1_1:-2085704 None:intergenic
ACCTTAGCACCCAGTAAGCC+TGG 0.485093 1_1:-2085419 None:intergenic
GAGGGACAATGGAAGATCTC+GGG 0.485772 1_1:+2085451 Msa0000780:CDS
TGAAACTGCTGAGCATTTGG+AGG 0.489835 1_1:+2085493 Msa0000780:CDS
GATTGAAACTTTGAGACTTG+AGG 0.492601 1_1:-2084085 None:intergenic
AATCAAGGGAGAGGAACAAT+TGG 0.500363 1_1:+2083790 Msa0000780:five_prime_UTR
TGTGAAGAAGTCATTGAAAA+CGG 0.503416 1_1:-2084314 None:intergenic
GATGCCTTTGCTGAACAGCC+AGG 0.508427 1_1:+2085401 Msa0000780:CDS
AATCATCTTTCTTCACGTGC+TGG 0.510076 1_1:-2085771 None:intergenic
TGCAATGATATACAGCAAGT+TGG 0.512442 1_1:+2085218 Msa0000780:intron
ATTATTAGCTCATCAAACTC+TGG 0.513244 1_1:-2085968 None:intergenic
CCAAATTCAATCGCAACGGC+CGG 0.515657 1_1:-2085664 None:intergenic
GGGTCTTTGAGGGAAGTTGG+TGG 0.516382 1_1:-2084036 None:intergenic
GAGGGTGAAGAGATTGAAGT+GGG 0.520228 1_1:-2084118 None:intergenic
AGAGGGACAATGGAAGATCT+CGG 0.522954 1_1:+2085450 Msa0000780:CDS
GTAACAACCTTAGACGATGC+TGG 0.523165 1_1:+2084269 Msa0000780:CDS
TAGATACATCTCACAACTGC+CGG 0.523547 1_1:-2085896 None:intergenic
GCCAGGCTTACTGGGTGCTA+AGG 0.524031 1_1:+2085418 Msa0000780:CDS
ATCTTGCTTTGGTTTATCAG+AGG 0.528721 1_1:-2084234 None:intergenic
TCATCTGTGGCAACGAATGG+AGG 0.531859 1_1:-2084137 None:intergenic
TCTATGCCGGAAACCTTGGT+TGG 0.535060 1_1:+2085354 Msa0000780:CDS
GGAGGGTGAAGAGATTGAAG+TGG 0.537121 1_1:-2084119 None:intergenic
TAGTGTTTAAATAGATGCGA+AGG 0.538430 1_1:+2086044 Msa0000780:three_prime_UTR
TGGCATCAATTGTTGAGTTG+GGG 0.541038 1_1:-2083864 None:intergenic
AGGAGGTGAAAGGTTAGTAA+TGG 0.541569 1_1:+2085280 Msa0000780:CDS
GAAATGATAACCTTCTCTTG+AGG 0.541771 1_1:+2086013 Msa0000780:three_prime_UTR
TGTGGCATCAATTGTTGAGT+TGG 0.543007 1_1:-2083866 None:intergenic
GCATCAATTGTTGAGTTGGG+GGG 0.543503 1_1:-2083862 None:intergenic
GGCATCAATTGTTGAGTTGG+GGG 0.544127 1_1:-2083863 None:intergenic
TGGCACAGTTGTGTCTGTTG+AGG 0.545137 1_1:+2084361 Msa0000780:CDS
AACTTCCCAGAAGTGCCAAA+AGG 0.552002 1_1:+2085260 Msa0000780:CDS
AATTCATCTGTGGCAACGAA+TGG 0.552971 1_1:-2084140 None:intergenic
AGCCCTCACAAGATCTATGC+CGG 0.567319 1_1:+2085341 Msa0000780:CDS
TGGTTGGGGACTGAACTCTC+AGG 0.577275 1_1:+2085370 Msa0000780:CDS
AAGGAAAGCAATCAAGGGAG+AGG 0.577296 1_1:+2083781 None:intergenic
GTCATCTATGAGAGGGACAA+TGG 0.578967 1_1:+2085440 Msa0000780:CDS
GATGCTGGAAGACTCTATGT+TGG 0.579187 1_1:+2084284 Msa0000780:CDS
TGGAAGAGTGTGTGAATGAG+AGG 0.581907 1_1:-2084001 None:intergenic
TGCAAATCCTCTGCTTCTGT+CGG 0.584206 1_1:-2084554 None:intergenic
AATGATATACAGCAAGTTGG+TGG 0.588262 1_1:+2085221 Msa0000780:intron
TGCTAAGGTCATCTATGAGA+GGG 0.594561 1_1:+2085433 Msa0000780:CDS
GCTGCTTTGAACGCCATGAA+CGG 0.600524 1_1:+2085515 Msa0000780:CDS
ATATACAGCAAGTTGGTGGT+AGG 0.600597 1_1:+2085225 Msa0000780:intron
TTTCCGGCATAGATCTTGTG+AGG 0.602123 1_1:-2085344 None:intergenic
TATTTAATACCCTCAAGAGA+AGG 0.610124 1_1:-2086023 None:intergenic
TATGCCGGAAACCTTGGTTG+GGG 0.610260 1_1:+2085356 Msa0000780:CDS
CGAGTTACCGACAGAAGCAG+AGG 0.610690 1_1:+2084547 Msa0000780:CDS
TAGATAATATAACTTATAGG+AGG 0.614619 1_1:-2085836 None:intergenic
TAAGCCTGGCTGTTCAGCAA+AGG 0.618059 1_1:-2085405 None:intergenic
AAGTGCCAAAAGGAGGTGAA+AGG 0.618488 1_1:+2085270 Msa0000780:CDS
CATCTGTGGCAACGAATGGA+GGG 0.620430 1_1:-2084136 None:intergenic
AGTTGGTGGTAGGAGTGCTA+AGG 0.622193 1_1:+2085235 Msa0000780:CDS
AAGGGAAGGAAAGCAATCAA+GGG 0.622467 1_1:+2083776 None:intergenic
TTGTGAGATGTATCTATAAG+GGG 0.624673 1_1:+2085903 Msa0000780:three_prime_UTR
AGTGTTTAAATAGATGCGAA+GGG 0.627349 1_1:+2086045 Msa0000780:three_prime_UTR
GAGAGTTCAGTCCCCAACCA+AGG 0.628580 1_1:-2085367 None:intergenic
GTGCTAAGGTCATCTATGAG+AGG 0.629825 1_1:+2085432 Msa0000780:CDS
TTCCGGCATAGATCTTGTGA+GGG 0.633745 1_1:-2085343 None:intergenic
GCAGCCAAATTCAATCGCAA+CGG 0.634188 1_1:-2085668 None:intergenic
TTCCCAGAAGTGCCAAAAGG+AGG 0.636421 1_1:+2085263 Msa0000780:CDS
AAAGTAAGGAACAGCTACAG+AGG 0.638782 1_1:+2085308 Msa0000780:CDS
AGATGTTTGAAATTCATCTG+TGG 0.653328 1_1:-2084150 None:intergenic
GAGGTGAAAGGTTAGTAATG+GGG 0.654669 1_1:+2085282 Msa0000780:CDS
AGGGACAATGGAAGATCTCG+GGG 0.654949 1_1:+2085452 Msa0000780:CDS
ATGGGAGAAGTGTTGTAATG+TGG 0.671093 1_1:-2083884 None:intergenic
GATTGAATTTGGCTGCAGCG+AGG 0.729863 1_1:+2085675 Msa0000780:CDS
TTTGAACGCCATGAACGGTG+TGG 0.764216 1_1:+2085520 Msa0000780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTTTTGTGTG+TGG + chr1_1:2084456-2084475 Msa0000780:intron 15.0%
!! ATCTAAATAATCAATTTATC+AGG + chr1_1:2085092-2085111 Msa0000780:intron 15.0%
!! TGATAGATAATATAACTTAT+AGG - chr1_1:2085842-2085861 None:intergenic 15.0%
!!! ATTTTTTTTTTTTTTGTGTG+TGG + chr1_1:2084456-2084475 Msa0000780:intron 15.0%
!! ATCTAAATAATCAATTTATC+AGG + chr1_1:2085092-2085111 Msa0000780:intron 15.0%
!! TGATAGATAATATAACTTAT+AGG - chr1_1:2085842-2085861 None:intergenic 15.0%
!!! TACTTAGTTTTATTTGATTC+AGG + chr1_1:2084659-2084678 Msa0000780:intron 20.0%
!!! TTTGTATTTTCTTCAATTAC+TGG - chr1_1:2085716-2085735 None:intergenic 20.0%
!! AATACAAAAAACAATGTTGA+AGG + chr1_1:2085728-2085747 Msa0000780:CDS 20.0%
!! TAGATAATATAACTTATAGG+AGG - chr1_1:2085839-2085858 None:intergenic 20.0%
!!! TACTTAGTTTTATTTGATTC+AGG + chr1_1:2084659-2084678 Msa0000780:intron 20.0%
!!! TTTGTATTTTCTTCAATTAC+TGG - chr1_1:2085716-2085735 None:intergenic 20.0%
!! AATACAAAAAACAATGTTGA+AGG + chr1_1:2085728-2085747 Msa0000780:CDS 20.0%
!! TAGATAATATAACTTATAGG+AGG - chr1_1:2085839-2085858 None:intergenic 20.0%
! ACTCAAAAAACAAAACACAA+TGG + chr1_1:2083929-2083948 Msa0000780:exon 25.0%
!!! TTTTTTGTGTGTGGATTTTA+TGG + chr1_1:2084465-2084484 Msa0000780:intron 25.0%
!! TTATTTGATTCAGGTTTCAT+AGG + chr1_1:2084668-2084687 Msa0000780:intron 25.0%
! AAGTATTTACTATTGTGACT+TGG + chr1_1:2084741-2084760 Msa0000780:intron 25.0%
! AAAGAAAGAGATATATTTGC+TGG - chr1_1:2084854-2084873 None:intergenic 25.0%
!! TTATCAGGATCTTTTATAGT+TGG + chr1_1:2085107-2085126 Msa0000780:intron 25.0%
!!! TTTGTTTTGCAATTTCAAGT+TGG + chr1_1:2085565-2085584 Msa0000780:intron 25.0%
! ATATAACTTATAGGAGGAAA+AGG - chr1_1:2085833-2085852 None:intergenic 25.0%
! ACTCAAAAAACAAAACACAA+TGG + chr1_1:2083929-2083948 Msa0000780:exon 25.0%
!!! TTTTTTGTGTGTGGATTTTA+TGG + chr1_1:2084465-2084484 Msa0000780:intron 25.0%
!! TTATTTGATTCAGGTTTCAT+AGG + chr1_1:2084668-2084687 Msa0000780:intron 25.0%
! AAGTATTTACTATTGTGACT+TGG + chr1_1:2084741-2084760 Msa0000780:intron 25.0%
! AAAGAAAGAGATATATTTGC+TGG - chr1_1:2084854-2084873 None:intergenic 25.0%
!! TTATCAGGATCTTTTATAGT+TGG + chr1_1:2085107-2085126 Msa0000780:intron 25.0%
!!! TTTGTTTTGCAATTTCAAGT+TGG + chr1_1:2085565-2085584 Msa0000780:intron 25.0%
! ATATAACTTATAGGAGGAAA+AGG - chr1_1:2085833-2085852 None:intergenic 25.0%
TTTGATAGGTGACAAAGATA+AGG - chr1_1:2083836-2083855 None:intergenic 30.0%
TATCTTTGTCACCTATCAAA+TGG + chr1_1:2083836-2083855 Msa0000780:five_prime_UTR 30.0%
CAAGAATTGAGTAGTGAAAT+GGG - chr1_1:2083905-2083924 None:intergenic 30.0%
!! ATTGAAACTTTGAGACTTGA+GGG - chr1_1:2084087-2084106 None:intergenic 30.0%
! AGATGTTTGAAATTCATCTG+TGG - chr1_1:2084153-2084172 None:intergenic 30.0%
TGTGAAGAAGTCATTGAAAA+CGG - chr1_1:2084317-2084336 None:intergenic 30.0%
TTCAATGACTTCTTCACAAT+TGG + chr1_1:2084319-2084338 Msa0000780:CDS 30.0%
TTACTGTTGTCTGTTTGATT+AGG + chr1_1:2084433-2084452 Msa0000780:intron 30.0%
! TGTTGTGTGTTTCATCATTT+TGG + chr1_1:2084812-2084831 Msa0000780:intron 30.0%
TTTAATAGTTGTCGCAGTAA+TGG + chr1_1:2084872-2084891 Msa0000780:intron 30.0%
TGCAATTCTCTGTCATATAA+AGG - chr1_1:2084916-2084935 None:intergenic 30.0%
! TTTGATTAGAGTATGGACTA+GGG - chr1_1:2085047-2085066 None:intergenic 30.0%
! TCAAAGCTTTGATTAGAGTA+TGG - chr1_1:2085054-2085073 None:intergenic 30.0%
!!! AGTTGGTTTTATGCAAAGTT+AGG + chr1_1:2085124-2085143 Msa0000780:intron 30.0%
! TAATGTGATGCAATGTTTTC+AGG + chr1_1:2085631-2085650 Msa0000780:intron 30.0%
! GTATTTTCTTCAATTACTGG+AGG - chr1_1:2085713-2085732 None:intergenic 30.0%
AAAAAACAATGTTGAAGGCT+CGG + chr1_1:2085733-2085752 Msa0000780:CDS 30.0%
! CTAAATGATGTGTATTTTCC+GGG - chr1_1:2085810-2085829 None:intergenic 30.0%
! GCTAAATGATGTGTATTTTC+CGG - chr1_1:2085811-2085830 None:intergenic 30.0%
ATCTATCAAACTAGTCATAC+TGG + chr1_1:2085854-2085873 Msa0000780:three_prime_UTR 30.0%
TATACACTAACTAGACTTTC+CGG + chr1_1:2085877-2085896 Msa0000780:three_prime_UTR 30.0%
AGTTGTGAGATGTATCTATA+AGG + chr1_1:2085901-2085920 Msa0000780:three_prime_UTR 30.0%
GTTGTGAGATGTATCTATAA+GGG + chr1_1:2085902-2085921 Msa0000780:three_prime_UTR 30.0%
TTGTGAGATGTATCTATAAG+GGG + chr1_1:2085903-2085922 Msa0000780:three_prime_UTR 30.0%
ATTATTAGCTCATCAAACTC+TGG - chr1_1:2085971-2085990 None:intergenic 30.0%
AAATGATAACCTTCTCTTGA+GGG + chr1_1:2086014-2086033 Msa0000780:three_prime_UTR 30.0%
TATTTAATACCCTCAAGAGA+AGG - chr1_1:2086026-2086045 None:intergenic 30.0%
TAGTGTTTAAATAGATGCGA+AGG + chr1_1:2086044-2086063 Msa0000780:three_prime_UTR 30.0%
AGTGTTTAAATAGATGCGAA+GGG + chr1_1:2086045-2086064 Msa0000780:three_prime_UTR 30.0%
TATTAGCATAATCTCAGAGA+CGG + chr1_1:2086078-2086097 Msa0000780:three_prime_UTR 30.0%
TTTGATAGGTGACAAAGATA+AGG - chr1_1:2083836-2083855 None:intergenic 30.0%
TATCTTTGTCACCTATCAAA+TGG + chr1_1:2083836-2083855 Msa0000780:five_prime_UTR 30.0%
CAAGAATTGAGTAGTGAAAT+GGG - chr1_1:2083905-2083924 None:intergenic 30.0%
!! ATTGAAACTTTGAGACTTGA+GGG - chr1_1:2084087-2084106 None:intergenic 30.0%
! AGATGTTTGAAATTCATCTG+TGG - chr1_1:2084153-2084172 None:intergenic 30.0%
TGTGAAGAAGTCATTGAAAA+CGG - chr1_1:2084317-2084336 None:intergenic 30.0%
TTCAATGACTTCTTCACAAT+TGG + chr1_1:2084319-2084338 Msa0000780:CDS 30.0%
TTACTGTTGTCTGTTTGATT+AGG + chr1_1:2084433-2084452 Msa0000780:intron 30.0%
! TGTTGTGTGTTTCATCATTT+TGG + chr1_1:2084812-2084831 Msa0000780:intron 30.0%
TTTAATAGTTGTCGCAGTAA+TGG + chr1_1:2084872-2084891 Msa0000780:intron 30.0%
TGCAATTCTCTGTCATATAA+AGG - chr1_1:2084916-2084935 None:intergenic 30.0%
! TTTGATTAGAGTATGGACTA+GGG - chr1_1:2085047-2085066 None:intergenic 30.0%
! TCAAAGCTTTGATTAGAGTA+TGG - chr1_1:2085054-2085073 None:intergenic 30.0%
!!! AGTTGGTTTTATGCAAAGTT+AGG + chr1_1:2085124-2085143 Msa0000780:intron 30.0%
! TAATGTGATGCAATGTTTTC+AGG + chr1_1:2085631-2085650 Msa0000780:intron 30.0%
! GTATTTTCTTCAATTACTGG+AGG - chr1_1:2085713-2085732 None:intergenic 30.0%
AAAAAACAATGTTGAAGGCT+CGG + chr1_1:2085733-2085752 Msa0000780:CDS 30.0%
! CTAAATGATGTGTATTTTCC+GGG - chr1_1:2085810-2085829 None:intergenic 30.0%
! GCTAAATGATGTGTATTTTC+CGG - chr1_1:2085811-2085830 None:intergenic 30.0%
ATCTATCAAACTAGTCATAC+TGG + chr1_1:2085854-2085873 Msa0000780:three_prime_UTR 30.0%
TATACACTAACTAGACTTTC+CGG + chr1_1:2085877-2085896 Msa0000780:three_prime_UTR 30.0%
AGTTGTGAGATGTATCTATA+AGG + chr1_1:2085901-2085920 Msa0000780:three_prime_UTR 30.0%
GTTGTGAGATGTATCTATAA+GGG + chr1_1:2085902-2085921 Msa0000780:three_prime_UTR 30.0%
TTGTGAGATGTATCTATAAG+GGG + chr1_1:2085903-2085922 Msa0000780:three_prime_UTR 30.0%
ATTATTAGCTCATCAAACTC+TGG - chr1_1:2085971-2085990 None:intergenic 30.0%
AAATGATAACCTTCTCTTGA+GGG + chr1_1:2086014-2086033 Msa0000780:three_prime_UTR 30.0%
TATTTAATACCCTCAAGAGA+AGG - chr1_1:2086026-2086045 None:intergenic 30.0%
TAGTGTTTAAATAGATGCGA+AGG + chr1_1:2086044-2086063 Msa0000780:three_prime_UTR 30.0%
AGTGTTTAAATAGATGCGAA+GGG + chr1_1:2086045-2086064 Msa0000780:three_prime_UTR 30.0%
CCAAGAATTGAGTAGTGAAA+TGG - chr1_1:2083906-2083925 None:intergenic 35.0%
CCATTTCACTACTCAATTCT+TGG + chr1_1:2083903-2083922 Msa0000780:five_prime_UTR 35.0%
TTGAAGGGTTTATGGGAAAT+GGG - chr1_1:2084059-2084078 None:intergenic 35.0%
ATTGAAGGGTTTATGGGAAA+TGG - chr1_1:2084060-2084079 None:intergenic 35.0%
!! GATTGAAACTTTGAGACTTG+AGG - chr1_1:2084088-2084107 None:intergenic 35.0%
!! TTCTTCAAGTTGGGAAACTA+TGG - chr1_1:2084183-2084202 None:intergenic 35.0%
!!! TCTGTTTTTTGTTCTGGTTC+TGG - chr1_1:2084206-2084225 None:intergenic 35.0%
!!! TCTGGTTCTGTTTTTTGTTC+TGG - chr1_1:2084212-2084231 None:intergenic 35.0%
! TTTGGTTTATCAGAGGTTTC+TGG - chr1_1:2084230-2084249 None:intergenic 35.0%
! ATCTTGCTTTGGTTTATCAG+AGG - chr1_1:2084237-2084256 None:intergenic 35.0%
TTCTGTTCTTCATCTTGCTT+TGG - chr1_1:2084248-2084267 None:intergenic 35.0%
GAAGCAATTCGAATGTTTGA+TGG + chr1_1:2084610-2084629 Msa0000780:CDS 35.0%
! TTTGATTCAGGTTTCATAGG+AGG + chr1_1:2084671-2084690 Msa0000780:intron 35.0%
! TTGATTCAGGTTTCATAGGA+GGG + chr1_1:2084672-2084691 Msa0000780:intron 35.0%
! GTGTGTTTCATCATTTTGGA+TGG + chr1_1:2084816-2084835 Msa0000780:intron 35.0%
TGGTTGCAAAAACTGCAAAA+CGG - chr1_1:2084971-2084990 None:intergenic 35.0%
!! TGGACTAGGGCTTTAAATAA+AGG - chr1_1:2085034-2085053 None:intergenic 35.0%
CTTTGATTAGAGTATGGACT+AGG - chr1_1:2085048-2085067 None:intergenic 35.0%
TGCAATGATATACAGCAAGT+TGG + chr1_1:2085218-2085237 Msa0000780:intron 35.0%
! AATGATATACAGCAAGTTGG+TGG + chr1_1:2085221-2085240 Msa0000780:intron 35.0%
! TAGTAATGGGGCAAAAAGTA+AGG + chr1_1:2085294-2085313 Msa0000780:CDS 35.0%
!!! TTTTGAAACTGCTGAGCATT+TGG + chr1_1:2085490-2085509 Msa0000780:CDS 35.0%
AACATTGCATCACATTAGCA+AGG - chr1_1:2085628-2085647 None:intergenic 35.0%
! TGATTGATCAAAGTTTTGCC+CGG + chr1_1:2085789-2085808 Msa0000780:three_prime_UTR 35.0%
!! AGGGGTTGATGTCAATTATA+TGG + chr1_1:2085921-2085940 Msa0000780:three_prime_UTR 35.0%
GAAATGATAACCTTCTCTTG+AGG + chr1_1:2086013-2086032 Msa0000780:three_prime_UTR 35.0%
CCAAGAATTGAGTAGTGAAA+TGG - chr1_1:2083906-2083925 None:intergenic 35.0%
CCATTTCACTACTCAATTCT+TGG + chr1_1:2083903-2083922 Msa0000780:five_prime_UTR 35.0%
TTGAAGGGTTTATGGGAAAT+GGG - chr1_1:2084059-2084078 None:intergenic 35.0%
ATTGAAGGGTTTATGGGAAA+TGG - chr1_1:2084060-2084079 None:intergenic 35.0%
!! GATTGAAACTTTGAGACTTG+AGG - chr1_1:2084088-2084107 None:intergenic 35.0%
!! TTCTTCAAGTTGGGAAACTA+TGG - chr1_1:2084183-2084202 None:intergenic 35.0%
!!! TCTGTTTTTTGTTCTGGTTC+TGG - chr1_1:2084206-2084225 None:intergenic 35.0%
!!! TCTGGTTCTGTTTTTTGTTC+TGG - chr1_1:2084212-2084231 None:intergenic 35.0%
! TTTGGTTTATCAGAGGTTTC+TGG - chr1_1:2084230-2084249 None:intergenic 35.0%
! ATCTTGCTTTGGTTTATCAG+AGG - chr1_1:2084237-2084256 None:intergenic 35.0%
TTCTGTTCTTCATCTTGCTT+TGG - chr1_1:2084248-2084267 None:intergenic 35.0%
GAAGCAATTCGAATGTTTGA+TGG + chr1_1:2084610-2084629 Msa0000780:CDS 35.0%
! TTTGATTCAGGTTTCATAGG+AGG + chr1_1:2084671-2084690 Msa0000780:intron 35.0%
! TTGATTCAGGTTTCATAGGA+GGG + chr1_1:2084672-2084691 Msa0000780:intron 35.0%
! GTGTGTTTCATCATTTTGGA+TGG + chr1_1:2084816-2084835 Msa0000780:intron 35.0%
TGGTTGCAAAAACTGCAAAA+CGG - chr1_1:2084971-2084990 None:intergenic 35.0%
!! TGGACTAGGGCTTTAAATAA+AGG - chr1_1:2085034-2085053 None:intergenic 35.0%
CTTTGATTAGAGTATGGACT+AGG - chr1_1:2085048-2085067 None:intergenic 35.0%
TGCAATGATATACAGCAAGT+TGG + chr1_1:2085218-2085237 Msa0000780:intron 35.0%
! AATGATATACAGCAAGTTGG+TGG + chr1_1:2085221-2085240 Msa0000780:intron 35.0%
! TAGTAATGGGGCAAAAAGTA+AGG + chr1_1:2085294-2085313 Msa0000780:CDS 35.0%
!!! TTTTGAAACTGCTGAGCATT+TGG + chr1_1:2085490-2085509 Msa0000780:CDS 35.0%
AACATTGCATCACATTAGCA+AGG - chr1_1:2085628-2085647 None:intergenic 35.0%
! TGATTGATCAAAGTTTTGCC+CGG + chr1_1:2085789-2085808 Msa0000780:three_prime_UTR 35.0%
!! AGGGGTTGATGTCAATTATA+TGG + chr1_1:2085921-2085940 Msa0000780:three_prime_UTR 35.0%
GAAATGATAACCTTCTCTTG+AGG + chr1_1:2086013-2086032 Msa0000780:three_prime_UTR 35.0%
AATCAAGGGAGAGGAACAAT+TGG + chr1_1:2083790-2083809 Msa0000780:five_prime_UTR 40.0%
! TGGCATCAATTGTTGAGTTG+GGG - chr1_1:2083867-2083886 None:intergenic 40.0%
GTGGCATCAATTGTTGAGTT+GGG - chr1_1:2083868-2083887 None:intergenic 40.0%
TGTGGCATCAATTGTTGAGT+TGG - chr1_1:2083869-2083888 None:intergenic 40.0%
!! ATGGGAGAAGTGTTGTAATG+TGG - chr1_1:2083887-2083906 None:intergenic 40.0%
TATGGGAAATGGGTCTTTGA+GGG - chr1_1:2084049-2084068 None:intergenic 40.0%
TTATGGGAAATGGGTCTTTG+AGG - chr1_1:2084050-2084069 None:intergenic 40.0%
GGTGAGATTGAAGGGTTTAT+GGG - chr1_1:2084066-2084085 None:intergenic 40.0%
AATTCATCTGTGGCAACGAA+TGG - chr1_1:2084143-2084162 None:intergenic 40.0%
!! TGGTTCTGGTTCTTCAAGTT+GGG - chr1_1:2084192-2084211 None:intergenic 40.0%
! GTGACTTGGCAAAACAATGT+TGG + chr1_1:2084755-2084774 Msa0000780:intron 40.0%
CAGAGAATTGCAGTCAAATG+CGG + chr1_1:2084924-2084943 Msa0000780:intron 40.0%
!! ATATACAGCAAGTTGGTGGT+AGG + chr1_1:2085225-2085244 Msa0000780:intron 40.0%
! ACTAACCTTTCACCTCCTTT+TGG - chr1_1:2085278-2085297 None:intergenic 40.0%
AGGAGGTGAAAGGTTAGTAA+TGG + chr1_1:2085280-2085299 Msa0000780:CDS 40.0%
GGAGGTGAAAGGTTAGTAAT+GGG + chr1_1:2085281-2085300 Msa0000780:CDS 40.0%
GAGGTGAAAGGTTAGTAATG+GGG + chr1_1:2085282-2085301 Msa0000780:CDS 40.0%
AAAGTAAGGAACAGCTACAG+AGG + chr1_1:2085308-2085327 Msa0000780:CDS 40.0%
TGCTAAGGTCATCTATGAGA+GGG + chr1_1:2085433-2085452 Msa0000780:CDS 40.0%
!! TGTGATGCAATGTTTTCAGG+AGG + chr1_1:2085634-2085653 Msa0000780:intron 40.0%
!! CAATGTTTTCAGGAGGTTCA+AGG + chr1_1:2085641-2085660 Msa0000780:intron 40.0%
TCTTCAATTACTGGAGGAGA+TGG - chr1_1:2085707-2085726 None:intergenic 40.0%
AATCATCTTTCTTCACGTGC+TGG - chr1_1:2085774-2085793 None:intergenic 40.0%
TAGATACATCTCACAACTGC+CGG - chr1_1:2085899-2085918 None:intergenic 40.0%
AATCAAGGGAGAGGAACAAT+TGG + chr1_1:2083790-2083809 Msa0000780:five_prime_UTR 40.0%
! TGGCATCAATTGTTGAGTTG+GGG - chr1_1:2083867-2083886 None:intergenic 40.0%
GTGGCATCAATTGTTGAGTT+GGG - chr1_1:2083868-2083887 None:intergenic 40.0%
TGTGGCATCAATTGTTGAGT+TGG - chr1_1:2083869-2083888 None:intergenic 40.0%
!! ATGGGAGAAGTGTTGTAATG+TGG - chr1_1:2083887-2083906 None:intergenic 40.0%
TATGGGAAATGGGTCTTTGA+GGG - chr1_1:2084049-2084068 None:intergenic 40.0%
TTATGGGAAATGGGTCTTTG+AGG - chr1_1:2084050-2084069 None:intergenic 40.0%
GGTGAGATTGAAGGGTTTAT+GGG - chr1_1:2084066-2084085 None:intergenic 40.0%
AATTCATCTGTGGCAACGAA+TGG - chr1_1:2084143-2084162 None:intergenic 40.0%
!! TGGTTCTGGTTCTTCAAGTT+GGG - chr1_1:2084192-2084211 None:intergenic 40.0%
! GTGACTTGGCAAAACAATGT+TGG + chr1_1:2084755-2084774 Msa0000780:intron 40.0%
CAGAGAATTGCAGTCAAATG+CGG + chr1_1:2084924-2084943 Msa0000780:intron 40.0%
!! ATATACAGCAAGTTGGTGGT+AGG + chr1_1:2085225-2085244 Msa0000780:intron 40.0%
! ACTAACCTTTCACCTCCTTT+TGG - chr1_1:2085278-2085297 None:intergenic 40.0%
AGGAGGTGAAAGGTTAGTAA+TGG + chr1_1:2085280-2085299 Msa0000780:CDS 40.0%
GGAGGTGAAAGGTTAGTAAT+GGG + chr1_1:2085281-2085300 Msa0000780:CDS 40.0%
GAGGTGAAAGGTTAGTAATG+GGG + chr1_1:2085282-2085301 Msa0000780:CDS 40.0%
AAAGTAAGGAACAGCTACAG+AGG + chr1_1:2085308-2085327 Msa0000780:CDS 40.0%
TGCTAAGGTCATCTATGAGA+GGG + chr1_1:2085433-2085452 Msa0000780:CDS 40.0%
!! TGTGATGCAATGTTTTCAGG+AGG + chr1_1:2085634-2085653 Msa0000780:intron 40.0%
!! CAATGTTTTCAGGAGGTTCA+AGG + chr1_1:2085641-2085660 Msa0000780:intron 40.0%
TCTTCAATTACTGGAGGAGA+TGG - chr1_1:2085707-2085726 None:intergenic 40.0%
AATCATCTTTCTTCACGTGC+TGG - chr1_1:2085774-2085793 None:intergenic 40.0%
TAGATACATCTCACAACTGC+CGG - chr1_1:2085899-2085918 None:intergenic 40.0%
TTGGGGGGTTTCCATTTGAT+AGG - chr1_1:2083850-2083869 None:intergenic 45.0%
!! GCATCAATTGTTGAGTTGGG+GGG - chr1_1:2083865-2083884 None:intergenic 45.0%
!! GGCATCAATTGTTGAGTTGG+GGG - chr1_1:2083866-2083885 None:intergenic 45.0%
! TGGAAGAGTGTGTGAATGAG+AGG - chr1_1:2084004-2084023 None:intergenic 45.0%
! AATGGGTCTTTGAGGGAAGT+TGG - chr1_1:2084042-2084061 None:intergenic 45.0%
GGGTGAGATTGAAGGGTTTA+TGG - chr1_1:2084067-2084086 None:intergenic 45.0%
GACTTGAGGGTGAGATTGAA+GGG - chr1_1:2084074-2084093 None:intergenic 45.0%
AGACTTGAGGGTGAGATTGA+AGG - chr1_1:2084075-2084094 None:intergenic 45.0%
GAGGGTGAAGAGATTGAAGT+GGG - chr1_1:2084121-2084140 None:intergenic 45.0%
!! CTGGTTCTGGTTCTTCAAGT+TGG - chr1_1:2084193-2084212 None:intergenic 45.0%
GTAACAACCTTAGACGATGC+TGG + chr1_1:2084269-2084288 Msa0000780:CDS 45.0%
GATGCTGGAAGACTCTATGT+TGG + chr1_1:2084284-2084303 Msa0000780:CDS 45.0%
! GCTGAGATTTTTGCAGAAGC+TGG + chr1_1:2084341-2084360 Msa0000780:CDS 45.0%
TGCAAATCCTCTGCTTCTGT+CGG - chr1_1:2084557-2084576 None:intergenic 45.0%
! ATTCAGGTTTCATAGGAGGG+TGG + chr1_1:2084675-2084694 Msa0000780:intron 45.0%
! CTGCAAAACGGTTCTGATTG+AGG - chr1_1:2084959-2084978 None:intergenic 45.0%
AAAGGTCTACAGCCGCAATA+TGG - chr1_1:2085016-2085035 None:intergenic 45.0%
!! AACTTCCCAGAAGTGCCAAA+AGG + chr1_1:2085260-2085279 Msa0000780:CDS 45.0%
AAGTGCCAAAAGGAGGTGAA+AGG + chr1_1:2085270-2085289 Msa0000780:CDS 45.0%
TTCCGGCATAGATCTTGTGA+GGG - chr1_1:2085346-2085365 None:intergenic 45.0%
TTTCCGGCATAGATCTTGTG+AGG - chr1_1:2085347-2085366 None:intergenic 45.0%
AAGATCTATGCCGGAAACCT+TGG + chr1_1:2085350-2085369 Msa0000780:CDS 45.0%
GTGCTAAGGTCATCTATGAG+AGG + chr1_1:2085432-2085451 Msa0000780:CDS 45.0%
GTCATCTATGAGAGGGACAA+TGG + chr1_1:2085440-2085459 Msa0000780:CDS 45.0%
AGAGGGACAATGGAAGATCT+CGG + chr1_1:2085450-2085469 Msa0000780:CDS 45.0%
! AATGGAAGATCTCGGGGTTT+TGG + chr1_1:2085458-2085477 Msa0000780:CDS 45.0%
TGAAACTGCTGAGCATTTGG+AGG + chr1_1:2085493-2085512 Msa0000780:CDS 45.0%
TGTACTTACCACACCGTTCA+TGG - chr1_1:2085531-2085550 None:intergenic 45.0%
! CGGTGTGGTAAGTACAGTTT+TGG + chr1_1:2085535-2085554 Msa0000780:intron 45.0%
CATCACATTAGCAAGGAACG+AGG - chr1_1:2085621-2085640 None:intergenic 45.0%
GCAGCCAAATTCAATCGCAA+CGG - chr1_1:2085671-2085690 None:intergenic 45.0%
TTGGGGGGTTTCCATTTGAT+AGG - chr1_1:2083850-2083869 None:intergenic 45.0%
!! GCATCAATTGTTGAGTTGGG+GGG - chr1_1:2083865-2083884 None:intergenic 45.0%
!! GGCATCAATTGTTGAGTTGG+GGG - chr1_1:2083866-2083885 None:intergenic 45.0%
! TGGAAGAGTGTGTGAATGAG+AGG - chr1_1:2084004-2084023 None:intergenic 45.0%
! AATGGGTCTTTGAGGGAAGT+TGG - chr1_1:2084042-2084061 None:intergenic 45.0%
GGGTGAGATTGAAGGGTTTA+TGG - chr1_1:2084067-2084086 None:intergenic 45.0%
GACTTGAGGGTGAGATTGAA+GGG - chr1_1:2084074-2084093 None:intergenic 45.0%
AGACTTGAGGGTGAGATTGA+AGG - chr1_1:2084075-2084094 None:intergenic 45.0%
GAGGGTGAAGAGATTGAAGT+GGG - chr1_1:2084121-2084140 None:intergenic 45.0%
!! CTGGTTCTGGTTCTTCAAGT+TGG - chr1_1:2084193-2084212 None:intergenic 45.0%
GTAACAACCTTAGACGATGC+TGG + chr1_1:2084269-2084288 Msa0000780:CDS 45.0%
GATGCTGGAAGACTCTATGT+TGG + chr1_1:2084284-2084303 Msa0000780:CDS 45.0%
! GCTGAGATTTTTGCAGAAGC+TGG + chr1_1:2084341-2084360 Msa0000780:CDS 45.0%
TGCAAATCCTCTGCTTCTGT+CGG - chr1_1:2084557-2084576 None:intergenic 45.0%
! ATTCAGGTTTCATAGGAGGG+TGG + chr1_1:2084675-2084694 Msa0000780:intron 45.0%
! CTGCAAAACGGTTCTGATTG+AGG - chr1_1:2084959-2084978 None:intergenic 45.0%
AAAGGTCTACAGCCGCAATA+TGG - chr1_1:2085016-2085035 None:intergenic 45.0%
!! AACTTCCCAGAAGTGCCAAA+AGG + chr1_1:2085260-2085279 Msa0000780:CDS 45.0%
AAGTGCCAAAAGGAGGTGAA+AGG + chr1_1:2085270-2085289 Msa0000780:CDS 45.0%
TTCCGGCATAGATCTTGTGA+GGG - chr1_1:2085346-2085365 None:intergenic 45.0%
TTTCCGGCATAGATCTTGTG+AGG - chr1_1:2085347-2085366 None:intergenic 45.0%
AAGATCTATGCCGGAAACCT+TGG + chr1_1:2085350-2085369 Msa0000780:CDS 45.0%
GTGCTAAGGTCATCTATGAG+AGG + chr1_1:2085432-2085451 Msa0000780:CDS 45.0%
GTCATCTATGAGAGGGACAA+TGG + chr1_1:2085440-2085459 Msa0000780:CDS 45.0%
AGAGGGACAATGGAAGATCT+CGG + chr1_1:2085450-2085469 Msa0000780:CDS 45.0%
! AATGGAAGATCTCGGGGTTT+TGG + chr1_1:2085458-2085477 Msa0000780:CDS 45.0%
TGAAACTGCTGAGCATTTGG+AGG + chr1_1:2085493-2085512 Msa0000780:CDS 45.0%
TGTACTTACCACACCGTTCA+TGG - chr1_1:2085531-2085550 None:intergenic 45.0%
! CGGTGTGGTAAGTACAGTTT+TGG + chr1_1:2085535-2085554 Msa0000780:intron 45.0%
CATCACATTAGCAAGGAACG+AGG - chr1_1:2085621-2085640 None:intergenic 45.0%
GCAGCCAAATTCAATCGCAA+CGG - chr1_1:2085671-2085690 None:intergenic 45.0%
!! GTTGGTGGTGGTGAGAGAAA+TGG - chr1_1:2084024-2084043 None:intergenic 50.0%
!! TCTTTGAGGGAAGTTGGTGG+TGG - chr1_1:2084036-2084055 None:intergenic 50.0%
GGAGGGTGAAGAGATTGAAG+TGG - chr1_1:2084122-2084141 None:intergenic 50.0%
CATCTGTGGCAACGAATGGA+GGG - chr1_1:2084139-2084158 None:intergenic 50.0%
TCATCTGTGGCAACGAATGG+AGG - chr1_1:2084140-2084159 None:intergenic 50.0%
GAGTCTTCCAGCATCGTCTA+AGG - chr1_1:2084279-2084298 None:intergenic 50.0%
TGGCACAGTTGTGTCTGTTG+AGG + chr1_1:2084361-2084380 Msa0000780:CDS 50.0%
! GGTTCTGATTGAGGCCACAT+CGG - chr1_1:2084950-2084969 None:intergenic 50.0%
! GCTGCGACACAACAGTCTTT+TGG - chr1_1:2084991-2085010 None:intergenic 50.0%
!! AGTTGGTGGTAGGAGTGCTA+AGG + chr1_1:2085235-2085254 Msa0000780:CDS 50.0%
!! TTCCCAGAAGTGCCAAAAGG+AGG + chr1_1:2085263-2085282 Msa0000780:CDS 50.0%
! CACCTCCTTTTGGCACTTCT+GGG - chr1_1:2085268-2085287 None:intergenic 50.0%
! TCACCTCCTTTTGGCACTTC+TGG - chr1_1:2085269-2085288 None:intergenic 50.0%
AGCCCTCACAAGATCTATGC+CGG + chr1_1:2085341-2085360 Msa0000780:CDS 50.0%
TCTATGCCGGAAACCTTGGT+TGG + chr1_1:2085354-2085373 Msa0000780:CDS 50.0%
CTATGCCGGAAACCTTGGTT+GGG + chr1_1:2085355-2085374 Msa0000780:CDS 50.0%
TATGCCGGAAACCTTGGTTG+GGG + chr1_1:2085356-2085375 Msa0000780:CDS 50.0%
TAAGCCTGGCTGTTCAGCAA+AGG - chr1_1:2085408-2085427 None:intergenic 50.0%
GAGGGACAATGGAAGATCTC+GGG + chr1_1:2085451-2085470 Msa0000780:CDS 50.0%
AGGGACAATGGAAGATCTCG+GGG + chr1_1:2085452-2085471 Msa0000780:CDS 50.0%
! GCTGCTTTGAACGCCATGAA+CGG + chr1_1:2085515-2085534 Msa0000780:CDS 50.0%
TTTGAACGCCATGAACGGTG+TGG + chr1_1:2085520-2085539 Msa0000780:CDS 50.0%
!! GTTTTCAGGAGGTTCAAGGC+CGG + chr1_1:2085645-2085664 Msa0000780:intron 50.0%
CCAAATTCAATCGCAACGGC+CGG - chr1_1:2085667-2085686 None:intergenic 50.0%
GATTGAATTTGGCTGCAGCG+AGG + chr1_1:2085675-2085694 Msa0000780:CDS 50.0%
!! GTTGGTGGTGGTGAGAGAAA+TGG - chr1_1:2084024-2084043 None:intergenic 50.0%
!! TCTTTGAGGGAAGTTGGTGG+TGG - chr1_1:2084036-2084055 None:intergenic 50.0%
GGAGGGTGAAGAGATTGAAG+TGG - chr1_1:2084122-2084141 None:intergenic 50.0%
CATCTGTGGCAACGAATGGA+GGG - chr1_1:2084139-2084158 None:intergenic 50.0%
TCATCTGTGGCAACGAATGG+AGG - chr1_1:2084140-2084159 None:intergenic 50.0%
GAGTCTTCCAGCATCGTCTA+AGG - chr1_1:2084279-2084298 None:intergenic 50.0%
TGGCACAGTTGTGTCTGTTG+AGG + chr1_1:2084361-2084380 Msa0000780:CDS 50.0%
! GGTTCTGATTGAGGCCACAT+CGG - chr1_1:2084950-2084969 None:intergenic 50.0%
! GCTGCGACACAACAGTCTTT+TGG - chr1_1:2084991-2085010 None:intergenic 50.0%
!! AGTTGGTGGTAGGAGTGCTA+AGG + chr1_1:2085235-2085254 Msa0000780:CDS 50.0%
!! TTCCCAGAAGTGCCAAAAGG+AGG + chr1_1:2085263-2085282 Msa0000780:CDS 50.0%
! CACCTCCTTTTGGCACTTCT+GGG - chr1_1:2085268-2085287 None:intergenic 50.0%
! TCACCTCCTTTTGGCACTTC+TGG - chr1_1:2085269-2085288 None:intergenic 50.0%
AGCCCTCACAAGATCTATGC+CGG + chr1_1:2085341-2085360 Msa0000780:CDS 50.0%
TCTATGCCGGAAACCTTGGT+TGG + chr1_1:2085354-2085373 Msa0000780:CDS 50.0%
CTATGCCGGAAACCTTGGTT+GGG + chr1_1:2085355-2085374 Msa0000780:CDS 50.0%
TATGCCGGAAACCTTGGTTG+GGG + chr1_1:2085356-2085375 Msa0000780:CDS 50.0%
TAAGCCTGGCTGTTCAGCAA+AGG - chr1_1:2085408-2085427 None:intergenic 50.0%
GAGGGACAATGGAAGATCTC+GGG + chr1_1:2085451-2085470 Msa0000780:CDS 50.0%
AGGGACAATGGAAGATCTCG+GGG + chr1_1:2085452-2085471 Msa0000780:CDS 50.0%
! GCTGCTTTGAACGCCATGAA+CGG + chr1_1:2085515-2085534 Msa0000780:CDS 50.0%
TTTGAACGCCATGAACGGTG+TGG + chr1_1:2085520-2085539 Msa0000780:CDS 50.0%
!! GTTTTCAGGAGGTTCAAGGC+CGG + chr1_1:2085645-2085664 Msa0000780:intron 50.0%
CCAAATTCAATCGCAACGGC+CGG - chr1_1:2085667-2085686 None:intergenic 50.0%
GATTGAATTTGGCTGCAGCG+AGG + chr1_1:2085675-2085694 Msa0000780:CDS 50.0%
! GGGTCTTTGAGGGAAGTTGG+TGG - chr1_1:2084039-2084058 None:intergenic 55.0%
CGAGTTACCGACAGAAGCAG+AGG + chr1_1:2084547-2084566 Msa0000780:CDS 55.0%
GTGTCGCAGCCACCATATTG+CGG + chr1_1:2085001-2085020 Msa0000780:intron 55.0%
GGTCTACAGCCGCAATATGG+TGG - chr1_1:2085013-2085032 None:intergenic 55.0%
CAGTCCCCAACCAAGGTTTC+CGG - chr1_1:2085363-2085382 None:intergenic 55.0%
GAGAGTTCAGTCCCCAACCA+AGG - chr1_1:2085370-2085389 None:intergenic 55.0%
TGGTTGGGGACTGAACTCTC+AGG + chr1_1:2085370-2085389 Msa0000780:CDS 55.0%
GATGCCTTTGCTGAACAGCC+AGG + chr1_1:2085401-2085420 Msa0000780:CDS 55.0%
TGCTGAACAGCCAGGCTTAC+TGG + chr1_1:2085409-2085428 Msa0000780:CDS 55.0%
GCTGAACAGCCAGGCTTACT+GGG + chr1_1:2085410-2085429 Msa0000780:CDS 55.0%
ACCTTAGCACCCAGTAAGCC+TGG - chr1_1:2085422-2085441 None:intergenic 55.0%
CCGGCCGTTGCGATTGAATT+TGG + chr1_1:2085664-2085683 Msa0000780:CDS 55.0%
! GGGTCTTTGAGGGAAGTTGG+TGG - chr1_1:2084039-2084058 None:intergenic 55.0%
CGAGTTACCGACAGAAGCAG+AGG + chr1_1:2084547-2084566 Msa0000780:CDS 55.0%
GTGTCGCAGCCACCATATTG+CGG + chr1_1:2085001-2085020 Msa0000780:intron 55.0%
GGTCTACAGCCGCAATATGG+TGG - chr1_1:2085013-2085032 None:intergenic 55.0%
CAGTCCCCAACCAAGGTTTC+CGG - chr1_1:2085363-2085382 None:intergenic 55.0%
GAGAGTTCAGTCCCCAACCA+AGG - chr1_1:2085370-2085389 None:intergenic 55.0%
TGGTTGGGGACTGAACTCTC+AGG + chr1_1:2085370-2085389 Msa0000780:CDS 55.0%
GATGCCTTTGCTGAACAGCC+AGG + chr1_1:2085401-2085420 Msa0000780:CDS 55.0%
TGCTGAACAGCCAGGCTTAC+TGG + chr1_1:2085409-2085428 Msa0000780:CDS 55.0%
GCTGAACAGCCAGGCTTACT+GGG + chr1_1:2085410-2085429 Msa0000780:CDS 55.0%
ACCTTAGCACCCAGTAAGCC+TGG - chr1_1:2085422-2085441 None:intergenic 55.0%
CCGGCCGTTGCGATTGAATT+TGG + chr1_1:2085664-2085683 Msa0000780:CDS 55.0%
GCAGTCAAATGCGGCCGATG+TGG + chr1_1:2084933-2084952 Msa0000780:intron 60.0%
GCCAGGCTTACTGGGTGCTA+AGG + chr1_1:2085418-2085437 Msa0000780:CDS 60.0%
GCAGTCAAATGCGGCCGATG+TGG + chr1_1:2084933-2084952 Msa0000780:intron 60.0%
GCCAGGCTTACTGGGTGCTA+AGG + chr1_1:2085418-2085437 Msa0000780:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 2083783 2086098 2083783 ID=Msa0000780;Name=Msa0000780
chr1_1 mRNA 2083783 2086098 2083783 ID=Msa0000780-mRNA-1;Parent=Msa0000780;Name=Msa0000780-mRNA-1;_AED=0.06;_eAED=0.06;_QI=165|1|1|1|1|1|4|317|324
chr1_1 exon 2083783 2084382 2083783 ID=Msa0000780-mRNA-1:exon:390;Parent=Msa0000780-mRNA-1
chr1_1 exon 2084535 2084636 2084535 ID=Msa0000780-mRNA-1:exon:391;Parent=Msa0000780-mRNA-1
chr1_1 exon 2085233 2085541 2085233 ID=Msa0000780-mRNA-1:exon:392;Parent=Msa0000780-mRNA-1
chr1_1 exon 2085653 2086098 2085653 ID=Msa0000780-mRNA-1:exon:393;Parent=Msa0000780-mRNA-1
chr1_1 five_prime_UTR 2083783 2083947 2083783 ID=Msa0000780-mRNA-1:five_prime_utr;Parent=Msa0000780-mRNA-1
chr1_1 CDS 2083948 2084382 2083948 ID=Msa0000780-mRNA-1:cds;Parent=Msa0000780-mRNA-1
chr1_1 CDS 2084535 2084636 2084535 ID=Msa0000780-mRNA-1:cds;Parent=Msa0000780-mRNA-1
chr1_1 CDS 2085233 2085541 2085233 ID=Msa0000780-mRNA-1:cds;Parent=Msa0000780-mRNA-1
chr1_1 CDS 2085653 2085781 2085653 ID=Msa0000780-mRNA-1:cds;Parent=Msa0000780-mRNA-1
chr1_1 three_prime_UTR 2085782 2086098 2085782 ID=Msa0000780-mRNA-1:three_prime_utr;Parent=Msa0000780-mRNA-1
Gene Sequence

>Msa0000780

ATGGCTACTGCAACAGCTTATGTTTCATCTTCAATCTTCAATAGAATCAATAACCTCTCATTCACACACTCTTCCATTTCTCTCACCACCACCAACTTCCCTCAAAGACCCATTTCCCATAAACCCTTCAATCTCACCCTCAAGTCTCAAAGTTTCAATCTTTCATCTCTCCCACTTCAATCTCTTCACCCTCCATTCGTTGCCACAGATGAATTTCAAACATCTCAAGACACCATAGTTTCCCAACTTGAAGAACCAGAACCAGAACAAAAAACAGAACCAGAAACCTCTGATAAACCAAAGCAAGATGAAGAACAGAAAGTAACAACCTTAGACGATGCTGGAAGACTCTATGTTGGAAATTTGCCGTTTTCAATGACTTCTTCACAATTGGCTGAGATTTTTGCAGAAGCTGGCACAGTTGTGTCTGTTGAGATTGTGTATGATCGAGTTACCGACAGAAGCAGAGGATTTGCATTTGTTACGATGAAAAGTGCTGAAGAAGCTAAAGAAGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGAGTGCTAAGGTAAACTTCCCAGAAGTGCCAAAAGGAGGTGAAAGGTTAGTAATGGGGCAAAAAGTAAGGAACAGCTACAGAGGCTTTGTAGACAGCCCTCACAAGATCTATGCCGGAAACCTTGGTTGGGGACTGAACTCTCAGGATCTTAGAGATGCCTTTGCTGAACAGCCAGGCTTACTGGGTGCTAAGGTCATCTATGAGAGGGACAATGGAAGATCTCGGGGTTTTGGATTTGTCACTTTTGAAACTGCTGAGCATTTGGAGGCTGCTTTGAACGCCATGAACGGTGTGGAGGTTCAAGGCCGGCCGTTGCGATTGAATTTGGCTGCAGCGAGGATATCTCCATCTCCTCCAGTAATTGAAGAAAATACAAAAAACAATGTTGAAGGCTCGGAATTGATGTCTAGTGCCAGCACGTGA
Protein sequence

>Msa0000780

MATATAYVSSSIFNRINNLSFTHSSISLTTTNFPQRPISHKPFNLTLKSQSFNLSSLPLQSLHPPFVATDEFQTSQDTIVSQLEEPEPEQKTEPETSDKPKQDEEQKVTTLDDAGRLYVGNLPFSMTSSQLAEIFAEAGTVVSVEIVYDRVTDRSRGFAFVTMKSAEEAKEAIRMFDGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGLNSQDLRDAFAEQPGLLGAKVIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRPLRLNLAAARISPSPPVIEENTKNNVEGSELMSSAST*