Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0905730 | XP_003618543.1 | 95.378 | 238 | 10 | 1 | 1 | 238 | 1 | 237 | 3.58e-167 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015090 | Msa0905730 | 0.811816 | 5.792422e-51 | -8.615850e-47 |
| Msa0020410 | Msa0905730 | 0.814482 | 1.506247e-51 | -8.615850e-47 |
| Msa0043980 | Msa0905730 | 0.867166 | 1.671491e-65 | -8.615850e-47 |
| Msa0049750 | Msa0905730 | 0.817878 | 2.623536e-52 | -8.615850e-47 |
| Msa0051210 | Msa0905730 | 0.810837 | 9.450316e-51 | -8.615850e-47 |
| Msa0051450 | Msa0905730 | 0.810805 | 9.604291e-51 | -8.615850e-47 |
| Msa0051630 | Msa0905730 | 0.807828 | 4.176835e-50 | -8.615850e-47 |
| Msa0051740 | Msa0905730 | 0.802725 | 4.895435e-49 | -8.615850e-47 |
| Msa0051750 | Msa0905730 | 0.827544 | 1.475407e-54 | -8.615850e-47 |
| Msa0065950 | Msa0905730 | 0.813878 | 2.048309e-51 | -8.615850e-47 |
| Msa0079130 | Msa0905730 | 0.803883 | 2.818161e-49 | -8.615850e-47 |
| Msa0083280 | Msa0905730 | 0.802479 | 5.502082e-49 | -8.615850e-47 |
| Msa0086420 | Msa0905730 | 0.819227 | 1.297490e-52 | -8.615850e-47 |
| Msa0089360 | Msa0905730 | 0.805232 | 1.474229e-49 | -8.615850e-47 |
| Msa0090360 | Msa0905730 | 0.806453 | 8.165704e-50 | -8.615850e-47 |
| Msa0101830 | Msa0905730 | 0.817366 | 3.422490e-52 | -8.615850e-47 |
| Msa0104800 | Msa0905730 | 0.831604 | 1.519634e-55 | -8.615850e-47 |
| Msa0621600 | Msa0905730 | 0.807620 | 4.623798e-50 | -8.615850e-47 |
| Msa0628740 | Msa0905730 | 0.823003 | 1.749801e-53 | -8.615850e-47 |
| Msa0633060 | Msa0905730 | 0.805259 | 1.455103e-49 | -8.615850e-47 |
| Msa0644840 | Msa0905730 | 0.805195 | 1.500633e-49 | -8.615850e-47 |
| Msa0653490 | Msa0905730 | 0.814368 | 1.596779e-51 | -8.615850e-47 |
| Msa0657120 | Msa0905730 | 0.813606 | 2.351377e-51 | -8.615850e-47 |
| Msa0666140 | Msa0905730 | 0.817231 | 3.670919e-52 | -8.615850e-47 |
| Msa0673460 | Msa0905730 | 0.827485 | 1.524408e-54 | -8.615850e-47 |
| Msa0685920 | Msa0905730 | 0.805961 | 1.036818e-49 | -8.615850e-47 |
| Msa0698360 | Msa0905730 | 0.819376 | 1.199640e-52 | -8.615850e-47 |
| Msa0701100 | Msa0905730 | 0.810346 | 1.206742e-50 | -8.615850e-47 |
| Msa0716960 | Msa0905730 | 0.815852 | 7.475490e-52 | -8.615850e-47 |
| Msa0717010 | Msa0905730 | 0.817710 | 2.863761e-52 | -8.615850e-47 |
| Msa0722070 | Msa0905730 | 0.812275 | 4.600579e-51 | -8.615850e-47 |
| Msa0731180 | Msa0905730 | 0.824007 | 1.019335e-53 | -8.615850e-47 |
| Msa0737600 | Msa0905730 | 0.804990 | 1.656639e-49 | -8.615850e-47 |
| Msa0740510 | Msa0905730 | 0.829962 | 3.837814e-55 | -8.615850e-47 |
| Msa0763890 | Msa0905730 | 0.820120 | 8.114481e-53 | -8.615850e-47 |
| Msa0763920 | Msa0905730 | 0.808402 | 3.151851e-50 | -8.615850e-47 |
| Msa0771580 | Msa0905730 | 0.831202 | 1.907738e-55 | -8.615850e-47 |
| Msa0795080 | Msa0905730 | 0.800409 | 1.460666e-48 | -8.615850e-47 |
| Msa0808080 | Msa0905730 | 0.807285 | 5.447215e-50 | -8.615850e-47 |
| Msa0817460 | Msa0905730 | 0.817615 | 3.007942e-52 | -8.615850e-47 |
| Msa0818890 | Msa0905730 | 0.820626 | 6.211011e-53 | -8.615850e-47 |
| Msa0820770 | Msa0905730 | 0.825453 | 4.649011e-54 | -8.615850e-47 |
| Msa0122590 | Msa0905730 | 0.802371 | 5.792039e-49 | -8.615850e-47 |
| Msa0127800 | Msa0905730 | 0.811421 | 7.059982e-51 | -8.615850e-47 |
| Msa0138020 | Msa0905730 | 0.831940 | 1.255107e-55 | -8.615850e-47 |
| Msa0143930 | Msa0905730 | 0.837152 | 6.151504e-57 | -8.615850e-47 |
| Msa0151180 | Msa0905730 | 0.822240 | 2.633173e-53 | -8.615850e-47 |
| Msa0153830 | Msa0905730 | 0.818444 | 1.953527e-52 | -8.615850e-47 |
| Msa0166870 | Msa0905730 | 0.811508 | 6.758887e-51 | -8.615850e-47 |
| Msa0175840 | Msa0905730 | 0.818850 | 1.580504e-52 | -8.615850e-47 |
| Msa0184040 | Msa0905730 | 0.800014 | 1.758052e-48 | -8.615850e-47 |
| Msa0194080 | Msa0905730 | 0.816200 | 6.249869e-52 | -8.615850e-47 |
| Msa0196670 | Msa0905730 | 0.803889 | 2.810317e-49 | -8.615850e-47 |
| Msa0206010 | Msa0905730 | 0.827579 | 1.447177e-54 | -8.615850e-47 |
| Msa0207030 | Msa0905730 | 0.812991 | 3.208746e-51 | -8.615850e-47 |
| Msa0217680 | Msa0905730 | 0.814748 | 1.315646e-51 | -8.615850e-47 |
| Msa0220440 | Msa0905730 | 0.839830 | 1.252830e-57 | -8.615850e-47 |
| Msa0224420 | Msa0905730 | 0.801358 | 9.351302e-49 | -8.615850e-47 |
| Msa0230610 | Msa0905730 | 0.807458 | 5.005930e-50 | -8.615850e-47 |
| Msa0233370 | Msa0905730 | 0.804149 | 2.481090e-49 | -8.615850e-47 |
| Msa0236420 | Msa0905730 | 0.800758 | 1.239996e-48 | -8.615850e-47 |
| Msa0376910 | Msa0905730 | 0.848717 | 5.129697e-60 | -8.615850e-47 |
| Msa0379640 | Msa0905730 | 0.809501 | 1.834264e-50 | -8.615850e-47 |
| Msa0391690 | Msa0905730 | 0.805963 | 1.035607e-49 | -8.615850e-47 |
| Msa0392270 | Msa0905730 | 0.808319 | 3.282746e-50 | -8.615850e-47 |
| Msa0412840 | Msa0905730 | 0.805906 | 1.064567e-49 | -8.615850e-47 |
| Msa0426900 | Msa0905730 | 0.800500 | 1.399986e-48 | -8.615850e-47 |
| Msa0431210 | Msa0905730 | 0.801294 | 9.635214e-49 | -8.615850e-47 |
| Msa0438040 | Msa0905730 | 0.810133 | 1.341384e-50 | -8.615850e-47 |
| Msa0453350 | Msa0905730 | 0.802717 | 4.915052e-49 | -8.615850e-47 |
| Msa0463060 | Msa0905730 | 0.810152 | 1.328518e-50 | -8.615850e-47 |
| Msa0469990 | Msa0905730 | 0.805521 | 1.282495e-49 | -8.615850e-47 |
| Msa0471900 | Msa0905730 | 0.842839 | 2.023278e-58 | -8.615850e-47 |
| Msa0477130 | Msa0905730 | -0.809645 | 1.708413e-50 | -8.615850e-47 |
| Msa0481530 | Msa0905730 | 0.801123 | 1.044629e-48 | -8.615850e-47 |
| Msa0245940 | Msa0905730 | 0.809224 | 2.102628e-50 | -8.615850e-47 |
| Msa0249200 | Msa0905730 | 0.830157 | 3.440459e-55 | -8.615850e-47 |
| Msa0253200 | Msa0905730 | 0.824412 | 8.185346e-54 | -8.615850e-47 |
| Msa0261720 | Msa0905730 | 0.824279 | 8.798127e-54 | -8.615850e-47 |
| Msa0270960 | Msa0905730 | 0.806040 | 9.976800e-50 | -8.615850e-47 |
| Msa0278580 | Msa0905730 | 0.811159 | 8.048281e-51 | -8.615850e-47 |
| Msa0287410 | Msa0905730 | 0.846935 | 1.588376e-59 | -8.615850e-47 |
| Msa0292030 | Msa0905730 | 0.826183 | 3.120348e-54 | -8.615850e-47 |
| Msa0299580 | Msa0905730 | 0.830031 | 3.691993e-55 | -8.615850e-47 |
| Msa0311720 | Msa0905730 | 0.820094 | 8.223207e-53 | -8.615850e-47 |
| Msa0316390 | Msa0905730 | 0.804929 | 1.705887e-49 | -8.615850e-47 |
| Msa0319170 | Msa0905730 | 0.826036 | 3.381821e-54 | -8.615850e-47 |
| Msa0326110 | Msa0905730 | 0.834019 | 3.817561e-56 | -8.615850e-47 |
| Msa0337060 | Msa0905730 | 0.830635 | 2.628239e-55 | -8.615850e-47 |
| Msa0344910 | Msa0905730 | 0.804722 | 1.884812e-49 | -8.615850e-47 |
| Msa0344980 | Msa0905730 | 0.801245 | 9.862211e-49 | -8.615850e-47 |
| Msa0346430 | Msa0905730 | 0.807335 | 5.314111e-50 | -8.615850e-47 |
| Msa0346890 | Msa0905730 | 0.806822 | 6.824982e-50 | -8.615850e-47 |
| Msa0363790 | Msa0905730 | 0.819093 | 1.391419e-52 | -8.615850e-47 |
| Msa0484780 | Msa0905730 | 0.815769 | 7.802068e-52 | -8.615850e-47 |
| Msa0486690 | Msa0905730 | 0.806892 | 6.596469e-50 | -8.615850e-47 |
| Msa0501450 | Msa0905730 | 0.801789 | 7.629097e-49 | -8.615850e-47 |
| Msa0518380 | Msa0905730 | 0.814691 | 1.354436e-51 | -8.615850e-47 |
| Msa0522070 | Msa0905730 | 0.802265 | 6.089903e-49 | -8.615850e-47 |
| Msa0529010 | Msa0905730 | 0.806564 | 7.737249e-50 | -8.615850e-47 |
| Msa0558370 | Msa0905730 | 0.811372 | 7.236715e-51 | -8.615850e-47 |
| Msa0561230 | Msa0905730 | 0.804207 | 2.412840e-49 | -8.615850e-47 |
| Msa0561240 | Msa0905730 | 0.821238 | 4.490062e-53 | -8.615850e-47 |
| Msa0564850 | Msa0905730 | 0.820328 | 7.267944e-53 | -8.615850e-47 |
| Msa0566350 | Msa0905730 | 0.819145 | 1.354169e-52 | -8.615850e-47 |
| Msa0566750 | Msa0905730 | 0.819349 | 1.217251e-52 | -8.615850e-47 |
| Msa0575470 | Msa0905730 | 0.826382 | 2.797301e-54 | -8.615850e-47 |
| Msa0575700 | Msa0905730 | 0.812323 | 4.491186e-51 | -8.615850e-47 |
| Msa0861090 | Msa0905730 | 0.820823 | 5.596706e-53 | -8.615850e-47 |
| Msa0861130 | Msa0905730 | 0.802083 | 6.637969e-49 | -8.615850e-47 |
| Msa0869120 | Msa0905730 | 0.829809 | 4.181643e-55 | -8.615850e-47 |
| Msa0871430 | Msa0905730 | 0.801335 | 9.453767e-49 | -8.615850e-47 |
| Msa0872440 | Msa0905730 | 0.907861 | 3.204963e-81 | -8.615850e-47 |
| Msa0905730 | Msa0924470 | 0.820277 | 7.467311e-53 | -8.615850e-47 |
| Msa0905730 | Msa0958920 | 0.810745 | 9.893151e-51 | -8.615850e-47 |
| Msa0905730 | Msa0974930 | 0.873510 | 1.390666e-67 | -8.615850e-47 |
| Msa0905730 | Msa0999100 | 0.807464 | 4.990141e-50 | -8.615850e-47 |
| Msa0905730 | Msa1005990 | 0.802657 | 5.056122e-49 | -8.615850e-47 |
| Msa0905730 | Msa1013070 | 0.812060 | 5.127207e-51 | -8.615850e-47 |
| Msa0905730 | Msa1019710 | 0.806487 | 8.033250e-50 | -8.615850e-47 |
| Msa0905730 | Msa1023180 | 0.822225 | 2.653948e-53 | -8.615850e-47 |
| Msa0905730 | Msa1023920 | 0.815884 | 7.354604e-52 | -8.615850e-47 |
| Msa0905730 | Msa1026640 | 0.811644 | 6.316343e-51 | -8.615850e-47 |
| Msa0905730 | Msa1034150 | 0.824087 | 9.758920e-54 | -8.615850e-47 |
| Msa0905730 | Msa1043050 | 0.819595 | 1.069742e-52 | -8.615850e-47 |
| Msa0905730 | Msa1082500 | 0.820504 | 6.622864e-53 | -8.615850e-47 |
| Msa0905730 | Msa1084430 | 0.803235 | 3.840317e-49 | -8.615850e-47 |
| Msa0905730 | Msa1098400 | 0.808432 | 3.106693e-50 | -8.615850e-47 |
| Msa0905730 | Msa1100050 | 0.814245 | 1.699850e-51 | -8.615850e-47 |
| Msa0905730 | Msa1107260 | 0.804997 | 1.651106e-49 | -8.615850e-47 |
| Msa0905730 | Msa1107900 | 0.823174 | 1.596079e-53 | -8.615850e-47 |
| Msa0905730 | Msa1113670 | 0.806564 | 7.736250e-50 | -8.615850e-47 |
| Msa0905730 | Msa1131220 | 0.810195 | 1.300457e-50 | -8.615850e-47 |
| Msa0905730 | Msa1135470 | 0.805323 | 1.411178e-49 | -8.615850e-47 |
| Msa0905730 | Msa1150710 | 0.827697 | 1.355906e-54 | -8.615850e-47 |
| Msa0905730 | Msa1162780 | 0.801645 | 8.167637e-49 | -8.615850e-47 |
| Msa0905730 | Msa1174040 | 0.808635 | 2.811619e-50 | -8.615850e-47 |
| Msa0905730 | Msa1186360 | 0.817776 | 2.766694e-52 | -8.615850e-47 |
| Msa0905730 | Msa1201560 | 0.826230 | 3.040054e-54 | -8.615850e-47 |
| Msa0905730 | Msa1204530 | 0.813199 | 2.889036e-51 | -8.615850e-47 |
| Msa0905730 | Msa1207310 | 0.803055 | 4.183943e-49 | -8.615850e-47 |
| Msa0905730 | Msa1216310 | 0.811900 | 5.555400e-51 | -8.615850e-47 |
| Msa0905730 | Msa1231810 | 0.804077 | 2.568575e-49 | -8.615850e-47 |
| Msa0905730 | Msa1237980 | 0.817044 | 4.043732e-52 | -8.615850e-47 |
| Msa0905730 | Msa1250530 | 0.839674 | 1.375561e-57 | -8.615850e-47 |
| Msa0905730 | Msa1270660 | 0.833465 | 5.250105e-56 | -8.615850e-47 |
| Msa0905730 | Msa1270730 | 0.830163 | 3.427197e-55 | -8.615850e-47 |
| Msa0905730 | Msa1276440 | 0.824387 | 8.299550e-54 | -8.615850e-47 |
| Msa0905730 | Msa1292400 | 0.810732 | 9.958930e-51 | -8.615850e-47 |
| Msa0905730 | Msa1305190 | 0.803365 | 3.609031e-49 | -8.615850e-47 |
| Msa0905730 | Msa1305340 | 0.819244 | 1.285822e-52 | -8.615850e-47 |
| Msa0905730 | Msa1305660 | 0.824815 | 6.577283e-54 | -8.615850e-47 |
| Msa0905730 | Msa1312500 | 0.822153 | 2.757827e-53 | -8.615850e-47 |
| Msa0905730 | Msa1314340 | 0.810020 | 1.418270e-50 | -8.615850e-47 |
| Msa0905730 | Msa1331000 | 0.808863 | 2.512523e-50 | -8.615850e-47 |
| Msa0905730 | Msa1331320 | 0.836434 | 9.381711e-57 | -8.615850e-47 |
| Msa0905730 | Msa1335230 | 0.820293 | 7.404810e-53 | -8.615850e-47 |
| Msa0905730 | Msa1339190 | 0.803070 | 4.153865e-49 | -8.615850e-47 |
| Msa0905730 | Msa1342900 | 0.805081 | 1.585390e-49 | -8.615850e-47 |
| Msa0905730 | Msa1353470 | 0.803617 | 3.200121e-49 | -8.615850e-47 |
| Msa0905730 | Msa1377080 | 0.815218 | 1.034819e-51 | -8.615850e-47 |
| Msa0905730 | Msa1397120 | 0.849581 | 2.950205e-60 | -8.615850e-47 |
| Msa0905730 | Msa1403890 | 0.846930 | 1.593333e-59 | -8.615850e-47 |
| Msa0905730 | Msa1407600 | 0.858824 | 6.320304e-63 | -8.615850e-47 |
| Msa0905730 | Msa1417200 | 0.812474 | 4.164007e-51 | -8.615850e-47 |
| Msa0905730 | Msa1423820 | 0.828346 | 9.460344e-55 | -8.615850e-47 |
| Msa0905730 | Msa1424450 | 0.808189 | 3.499819e-50 | -8.615850e-47 |
| Msa0905730 | Msa1427230 | 0.816086 | 6.628302e-52 | -8.615850e-47 |
| Msa0905730 | Msa1428780 | 0.807291 | 5.430557e-50 | -8.615850e-47 |
| Msa0905730 | Msa1433390 | 0.807402 | 5.143907e-50 | -8.615850e-47 |
| Msa0905730 | Msa1434420 | -0.815187 | 1.051400e-51 | -8.615850e-47 |
| Msa0905730 | Msa1435270 | 0.823771 | 1.157812e-53 | -8.615850e-47 |
| Msa0905730 | Msa1448630 | 0.815491 | 8.997381e-52 | -8.615850e-47 |
| Msa0905730 | Msa1458610 | 0.802483 | 5.491003e-49 | -8.615850e-47 |
| Msa0905730 | Msa1460830 | 0.804456 | 2.141201e-49 | -8.615850e-47 |
| Msa0905730 | Msa1462290 | 0.830141 | 3.470166e-55 | -8.615850e-47 |
| Msa0905730 | Msa1466730 | 0.826301 | 2.924555e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0905730 | MtrunA17_Chr6g0453601 | 95.378 | 238 | 10 | 1 | 1 | 238 | 1 | 237 | 3.30e-171 | 471 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0905730 | AT5G39530.1 | 45.550 | 191 | 103 | 1 | 39 | 229 | 43 | 232 | 5.43e-60 | 189 |
| Msa0905730 | AT5G39520.1 | 40.609 | 197 | 115 | 2 | 39 | 235 | 35 | 229 | 3.13e-53 | 172 |
| Msa0905730 | AT5G39530.2 | 43.784 | 185 | 95 | 2 | 39 | 223 | 43 | 218 | 4.96e-53 | 171 |
Find 50 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACTCTTTCCCTTCCTTTC+TGG | 0.048858 | 6_2:-3977536 | None:intergenic |
| ATATTTCATCAATCATATTA+TGG | 0.242497 | 6_2:+3976260 | Msa0905730:exon |
| ACCCCTGGCAACTCATAAAA+AGG | 0.270021 | 6_2:-3976432 | None:intergenic |
| CTTAACCTTACATCTACTTT+TGG | 0.275287 | 6_2:-3977150 | None:intergenic |
| GGCTTCCTTTGATCAATATA+TGG | 0.278362 | 6_2:+3976548 | Msa0905730:intron |
| AAAGCAGTGTTTCCTGAAAA+AGG | 0.293804 | 6_2:+3976591 | Msa0905730:CDS |
| AGAATTCATTGCAGTTAATC+AGG | 0.305063 | 6_2:-3978212 | None:intergenic |
| TGATCCATCATTGATTCAAT+TGG | 0.342949 | 6_2:-3978154 | None:intergenic |
| CATCATGTTCATCAGTGATT+AGG | 0.371639 | 6_2:+3976364 | Msa0905730:CDS |
| TATACAATGCTTCATCTTGA+AGG | 0.378322 | 6_2:+3977122 | Msa0905730:CDS |
| CTGTCAAAGTTGTAAACAAA+TGG | 0.407838 | 6_2:-3978107 | None:intergenic |
| TGTATAAGGTATTGAGTCCT+TGG | 0.417418 | 6_2:-3977469 | None:intergenic |
| AGATGAATGACATTTGCAAT+TGG | 0.427116 | 6_2:-3978283 | None:intergenic |
| GACTTCAACTTAGATGTAAG+AGG | 0.434676 | 6_2:+3977503 | Msa0905730:CDS |
| AACACTGCTTTGACTACTCT+TGG | 0.446906 | 6_2:-3976579 | None:intergenic |
| TCAGCCAATTGAATCAATGA+TGG | 0.448266 | 6_2:+3978150 | Msa0905730:three_prime_UTR |
| CAAGTATTAGTGTGGTTCCT+TGG | 0.454957 | 6_2:+3976283 | Msa0905730:CDS |
| AGGTTAAGAATAAAGTCTAA+TGG | 0.464292 | 6_2:+3977165 | Msa0905730:CDS |
| TTCAACCAAAAGTAGATGTA+AGG | 0.465816 | 6_2:+3977145 | Msa0905730:CDS |
| GCATCTCGTAAGATATGTTC+AGG | 0.467326 | 6_2:-3977623 | None:intergenic |
| GTCGTAAGGATCATTGTATA+AGG | 0.478912 | 6_2:-3977483 | None:intergenic |
| CAAATGAAGCAGGAATTTCA+TGG | 0.480806 | 6_2:+3978009 | Msa0905730:CDS |
| TCAGGAACAAAAGTCATTGT+TGG | 0.485860 | 6_2:-3977605 | None:intergenic |
| AAAGGAAGGGAAAGAGTAGT+TGG | 0.497535 | 6_2:+3977540 | Msa0905730:CDS |
| TTCAAGATGAAGCATTGTAT+AGG | 0.516620 | 6_2:-3977120 | None:intergenic |
| TATTATATATCCAGAAAGGA+AGG | 0.525308 | 6_2:+3977526 | Msa0905730:CDS |
| TGTACTAATAATGGTTGCCA+AGG | 0.529607 | 6_2:-3976300 | None:intergenic |
| CTTACGAGATGCATTAGAGT+TGG | 0.542520 | 6_2:+3977634 | Msa0905730:CDS |
| TATTAGTACAAAAGAAGCAT+AGG | 0.548171 | 6_2:+3976313 | Msa0905730:CDS |
| AAAGTTGTAAACAAATGGAA+TGG | 0.548320 | 6_2:-3978102 | None:intergenic |
| ACATCTAAGTTGAAGTCGTA+AGG | 0.548661 | 6_2:-3977497 | None:intergenic |
| TTATATGTATACAGGAGGAA+TGG | 0.554629 | 6_2:+3977082 | Msa0905730:intron |
| GATGTGGAATCAAATGAAGC+AGG | 0.560904 | 6_2:+3977999 | Msa0905730:CDS |
| AATGGACCACATGTTTAGAC+TGG | 0.571782 | 6_2:-3978084 | None:intergenic |
| AAGATGAAGCATTGTATAGG+AGG | 0.579892 | 6_2:-3977117 | None:intergenic |
| TAGTTGGCTCAAGAATCAAA+TGG | 0.580045 | 6_2:+3977556 | Msa0905730:CDS |
| ATCATCCATATATTGATCAA+AGG | 0.580382 | 6_2:-3976553 | None:intergenic |
| GAGGTATTATATATCCAGAA+AGG | 0.582099 | 6_2:+3977522 | Msa0905730:CDS |
| AATGCTTCTATAGCTGAATG+AGG | 0.582669 | 6_2:-3976400 | None:intergenic |
| AACTTTGACAGCAATTGCTG+AGG | 0.594475 | 6_2:+3978119 | Msa0905730:three_prime_UTR |
| CAGACGAGGTGGGAGCTCCA+AGG | 0.602105 | 6_2:+3977452 | Msa0905730:intron |
| ATTATATATCCAGAAAGGAA+GGG | 0.617916 | 6_2:+3977527 | Msa0905730:CDS |
| TATTATGGCAAGTATTAGTG+TGG | 0.633104 | 6_2:+3976275 | Msa0905730:exon |
| TTAAATCCTATCAGACGAGG+TGG | 0.635432 | 6_2:+3977441 | Msa0905730:intron |
| AAAAGTCCAGTCTAAACATG+TGG | 0.642223 | 6_2:+3978078 | Msa0905730:exon |
| AACAGGTATTCAAAACGATG+TGG | 0.655966 | 6_2:+3977983 | Msa0905730:intron |
| AAACTCTAAACAGCTCAATG+AGG | 0.660173 | 6_2:+3976614 | Msa0905730:CDS |
| ATGTGATGAGCAATGTGAGG+TGG | 0.661176 | 6_2:-3977198 | None:intergenic |
| TAAATCCTATCAGACGAGGT+GGG | 0.681527 | 6_2:+3977442 | Msa0905730:intron |
| CTAATGTGATGAGCAATGTG+AGG | 0.762065 | 6_2:-3977201 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTTCAAAAAAAAAAAATA+TGG | + | chr6_2:3976872-3976891 | Msa0905730:intron | 10.0% |
| !!! | AAAAATATGGTTTTAAATTA+TGG | + | chr6_2:3976885-3976904 | Msa0905730:intron | 10.0% |
| !!! | TTAATTTTAAGGTAATATAA+AGG | - | chr6_2:3976923-3976942 | None:intergenic | 10.0% |
| !!! | TTTTTTTCTTCTTAATTTTA+AGG | - | chr6_2:3976934-3976953 | None:intergenic | 10.0% |
| !! | TTCTTCAAAAAAAAAAAATA+TGG | + | chr6_2:3976872-3976891 | Msa0905730:intron | 10.0% |
| !!! | AAAAATATGGTTTTAAATTA+TGG | + | chr6_2:3976885-3976904 | Msa0905730:intron | 10.0% |
| !!! | TTAATTTTAAGGTAATATAA+AGG | - | chr6_2:3976923-3976942 | None:intergenic | 10.0% |
| !!! | TTTTTTTCTTCTTAATTTTA+AGG | - | chr6_2:3976934-3976953 | None:intergenic | 10.0% |
| !! | ATATTTCATCAATCATATTA+TGG | + | chr6_2:3976260-3976279 | Msa0905730:exon | 15.0% |
| !!! | TTTGTAATTTTTTTTTTTGC+AGG | + | chr6_2:3976527-3976546 | Msa0905730:intron | 15.0% |
| !! | AAATTAAGAAGAAAAAAATG+TGG | + | chr6_2:3976936-3976955 | Msa0905730:intron | 15.0% |
| !!! | TAAATTAGTTTAAGCAAATT+TGG | - | chr6_2:3977731-3977750 | None:intergenic | 15.0% |
| !! | ATATACAAATATAAGCTATT+TGG | - | chr6_2:3977911-3977930 | None:intergenic | 15.0% |
| !!! | TATATGTTGATAAAATTAAC+AGG | + | chr6_2:3977966-3977985 | Msa0905730:intron | 15.0% |
| !! | ATAATATGATTGATGAAATA+TGG | - | chr6_2:3976261-3976280 | None:intergenic | 15.0% |
| !! | ATATTTCATCAATCATATTA+TGG | + | chr6_2:3976260-3976279 | Msa0905730:exon | 15.0% |
| !!! | TTTGTAATTTTTTTTTTTGC+AGG | + | chr6_2:3976527-3976546 | Msa0905730:intron | 15.0% |
| !! | AAATTAAGAAGAAAAAAATG+TGG | + | chr6_2:3976936-3976955 | Msa0905730:intron | 15.0% |
| !!! | TAAATTAGTTTAAGCAAATT+TGG | - | chr6_2:3977731-3977750 | None:intergenic | 15.0% |
| !! | ATATACAAATATAAGCTATT+TGG | - | chr6_2:3977911-3977930 | None:intergenic | 15.0% |
| !!! | TATATGTTGATAAAATTAAC+AGG | + | chr6_2:3977966-3977985 | Msa0905730:intron | 15.0% |
| !! | AAAATTTGTGTTAGAATCAT+TGG | - | chr6_2:3976509-3976528 | None:intergenic | 20.0% |
| !!! | TATAATTTGTTGAGGTAATA+TGG | + | chr6_2:3976842-3976861 | Msa0905730:intron | 20.0% |
| !!! | TATAACAATTTTAGAGGTTT+CGG | - | chr6_2:3976985-3977004 | None:intergenic | 20.0% |
| !!! | TACTCATTAGCTTTAATTAA+GGG | - | chr6_2:3977045-3977064 | None:intergenic | 20.0% |
| !! | ACTATTGTTTATATGTATAC+AGG | + | chr6_2:3977074-3977093 | Msa0905730:intron | 20.0% |
| !!! | GATCATTCTTATTTCATTTT+CGG | + | chr6_2:3977309-3977328 | Msa0905730:intron | 20.0% |
| !!! | TAAACTAATTTAGACTTGTT+TGG | + | chr6_2:3977739-3977758 | Msa0905730:intron | 20.0% |
| !! | AACTTATCTAATTTGAACTA+AGG | + | chr6_2:3977781-3977800 | Msa0905730:intron | 20.0% |
| !! | ACTTATCTAATTTGAACTAA+GGG | + | chr6_2:3977782-3977801 | Msa0905730:intron | 20.0% |
| !!! | ACTAGTGTAATTTTTTCTTT+TGG | + | chr6_2:3978319-3978338 | Msa0905730:three_prime_UTR | 20.0% |
| !! | AAAATTTGTGTTAGAATCAT+TGG | - | chr6_2:3976509-3976528 | None:intergenic | 20.0% |
| !!! | TATAATTTGTTGAGGTAATA+TGG | + | chr6_2:3976842-3976861 | Msa0905730:intron | 20.0% |
| !!! | TATAACAATTTTAGAGGTTT+CGG | - | chr6_2:3976985-3977004 | None:intergenic | 20.0% |
| !!! | TACTCATTAGCTTTAATTAA+GGG | - | chr6_2:3977045-3977064 | None:intergenic | 20.0% |
| !! | ACTATTGTTTATATGTATAC+AGG | + | chr6_2:3977074-3977093 | Msa0905730:intron | 20.0% |
| !!! | GATCATTCTTATTTCATTTT+CGG | + | chr6_2:3977309-3977328 | Msa0905730:intron | 20.0% |
| !!! | TAAACTAATTTAGACTTGTT+TGG | + | chr6_2:3977739-3977758 | Msa0905730:intron | 20.0% |
| !! | AACTTATCTAATTTGAACTA+AGG | + | chr6_2:3977781-3977800 | Msa0905730:intron | 20.0% |
| !! | ACTTATCTAATTTGAACTAA+GGG | + | chr6_2:3977782-3977801 | Msa0905730:intron | 20.0% |
| !!! | ACTAGTGTAATTTTTTCTTT+TGG | + | chr6_2:3978319-3978338 | Msa0905730:three_prime_UTR | 20.0% |
| !! | TGCTTCTTTTGTACTAATAA+TGG | - | chr6_2:3976312-3976331 | None:intergenic | 25.0% |
| !! | TATTAGTACAAAAGAAGCAT+AGG | + | chr6_2:3976313-3976332 | Msa0905730:CDS | 25.0% |
| !! | AAAATTTGATAATATACCCC+TGG | - | chr6_2:3976450-3976469 | None:intergenic | 25.0% |
| ! | ATCATCCATATATTGATCAA+AGG | - | chr6_2:3976556-3976575 | None:intergenic | 25.0% |
| !!! | ACACAATATAAAGGTTTTAG+AGG | - | chr6_2:3976794-3976813 | None:intergenic | 25.0% |
| ! | CTAAAAGTGACACAATATAA+AGG | - | chr6_2:3976803-3976822 | None:intergenic | 25.0% |
| !!! | TGGTTATCTATAATTTGTTG+AGG | + | chr6_2:3976834-3976853 | Msa0905730:intron | 25.0% |
| !! | TCGCAATATAACAATTTTAG+AGG | - | chr6_2:3976991-3977010 | None:intergenic | 25.0% |
| ! | AAATTGTTATATTGCGATTG+CGG | + | chr6_2:3976994-3977013 | Msa0905730:intron | 25.0% |
| ! | TTTAATTAAGGGACACAATA+TGG | - | chr6_2:3977034-3977053 | None:intergenic | 25.0% |
| !!! | GTACTCATTAGCTTTAATTA+AGG | - | chr6_2:3977046-3977065 | None:intergenic | 25.0% |
| ! | ATTGTTTATATGTATACAGG+AGG | + | chr6_2:3977077-3977096 | Msa0905730:intron | 25.0% |
| ! | AGGTTAAGAATAAAGTCTAA+TGG | + | chr6_2:3977165-3977184 | Msa0905730:CDS | 25.0% |
| ! | TCACGAGTATAATTTATTGA+CGG | + | chr6_2:3977386-3977405 | Msa0905730:intron | 25.0% |
| ! | TATTATATATCCAGAAAGGA+AGG | + | chr6_2:3977526-3977545 | Msa0905730:CDS | 25.0% |
| ! | ATTATATATCCAGAAAGGAA+GGG | + | chr6_2:3977527-3977546 | Msa0905730:CDS | 25.0% |
| ! | ACAATAGTTTAATTCTCATC+CGG | - | chr6_2:3977836-3977855 | None:intergenic | 25.0% |
| !! | AAAAGATGACATGTTTGTTA+CGG | - | chr6_2:3977883-3977902 | None:intergenic | 25.0% |
| ! | AAAGTTGTAAACAAATGGAA+TGG | - | chr6_2:3978105-3978124 | None:intergenic | 25.0% |
| !! | TGCTTCTTTTGTACTAATAA+TGG | - | chr6_2:3976312-3976331 | None:intergenic | 25.0% |
| !! | TATTAGTACAAAAGAAGCAT+AGG | + | chr6_2:3976313-3976332 | Msa0905730:CDS | 25.0% |
| !! | AAAATTTGATAATATACCCC+TGG | - | chr6_2:3976450-3976469 | None:intergenic | 25.0% |
| ! | ATCATCCATATATTGATCAA+AGG | - | chr6_2:3976556-3976575 | None:intergenic | 25.0% |
| !!! | ACACAATATAAAGGTTTTAG+AGG | - | chr6_2:3976794-3976813 | None:intergenic | 25.0% |
| ! | CTAAAAGTGACACAATATAA+AGG | - | chr6_2:3976803-3976822 | None:intergenic | 25.0% |
| !!! | TGGTTATCTATAATTTGTTG+AGG | + | chr6_2:3976834-3976853 | Msa0905730:intron | 25.0% |
| !! | TCGCAATATAACAATTTTAG+AGG | - | chr6_2:3976991-3977010 | None:intergenic | 25.0% |
| ! | AAATTGTTATATTGCGATTG+CGG | + | chr6_2:3976994-3977013 | Msa0905730:intron | 25.0% |
| ! | TTTAATTAAGGGACACAATA+TGG | - | chr6_2:3977034-3977053 | None:intergenic | 25.0% |
| !!! | GTACTCATTAGCTTTAATTA+AGG | - | chr6_2:3977046-3977065 | None:intergenic | 25.0% |
| ! | ATTGTTTATATGTATACAGG+AGG | + | chr6_2:3977077-3977096 | Msa0905730:intron | 25.0% |
| ! | AGGTTAAGAATAAAGTCTAA+TGG | + | chr6_2:3977165-3977184 | Msa0905730:CDS | 25.0% |
| ! | TCACGAGTATAATTTATTGA+CGG | + | chr6_2:3977386-3977405 | Msa0905730:intron | 25.0% |
| ! | TATTATATATCCAGAAAGGA+AGG | + | chr6_2:3977526-3977545 | Msa0905730:CDS | 25.0% |
| ! | ATTATATATCCAGAAAGGAA+GGG | + | chr6_2:3977527-3977546 | Msa0905730:CDS | 25.0% |
| ! | ACAATAGTTTAATTCTCATC+CGG | - | chr6_2:3977836-3977855 | None:intergenic | 25.0% |
| !! | AAAAGATGACATGTTTGTTA+CGG | - | chr6_2:3977883-3977902 | None:intergenic | 25.0% |
| ! | AAAGTTGTAAACAAATGGAA+TGG | - | chr6_2:3978105-3978124 | None:intergenic | 25.0% |
| TATTATGGCAAGTATTAGTG+TGG | + | chr6_2:3976275-3976294 | Msa0905730:exon | 30.0% | |
| GAAGATGAAGATGGTAATTA+AGG | - | chr6_2:3976477-3976496 | None:intergenic | 30.0% | |
| !! | TTAGAATCATTGGTTTGGAT+TGG | - | chr6_2:3976499-3976518 | None:intergenic | 30.0% |
| ! | TTGTGTTAGAATCATTGGTT+TGG | - | chr6_2:3976504-3976523 | None:intergenic | 30.0% |
| !! | TGTTTAGAGTTTCCTTTTTC+AGG | - | chr6_2:3976606-3976625 | None:intergenic | 30.0% |
| TTACGTTGCAAACCTTTATT+TGG | + | chr6_2:3976714-3976733 | Msa0905730:intron | 30.0% | |
| !!! | CACTTTTAGAACTATGTGTA+TGG | + | chr6_2:3976814-3976833 | Msa0905730:intron | 30.0% |
| AGAAAAAAATGTGGTCAATG+CGG | + | chr6_2:3976945-3976964 | Msa0905730:intron | 30.0% | |
| TTATATGTATACAGGAGGAA+TGG | + | chr6_2:3977082-3977101 | Msa0905730:intron | 30.0% | |
| !! | TTCAAGATGAAGCATTGTAT+AGG | - | chr6_2:3977123-3977142 | None:intergenic | 30.0% |
| TATACAATGCTTCATCTTGA+AGG | + | chr6_2:3977122-3977141 | Msa0905730:CDS | 30.0% | |
| TTCAACCAAAAGTAGATGTA+AGG | + | chr6_2:3977145-3977164 | Msa0905730:CDS | 30.0% | |
| ! | CTTAACCTTACATCTACTTT+TGG | - | chr6_2:3977153-3977172 | None:intergenic | 30.0% |
| ! | CATTTTGTAAGCACTTTCAT+TGG | + | chr6_2:3977240-3977259 | Msa0905730:intron | 30.0% |
| ! | GAGGTATTATATATCCAGAA+AGG | + | chr6_2:3977522-3977541 | Msa0905730:CDS | 30.0% |
| CTAATTTGAACTAAGGGATA+AGG | + | chr6_2:3977788-3977807 | Msa0905730:intron | 30.0% | |
| CAATAGTTTAATTCTCATCC+GGG | - | chr6_2:3977835-3977854 | None:intergenic | 30.0% | |
| CTGTCAAAGTTGTAAACAAA+TGG | - | chr6_2:3978110-3978129 | None:intergenic | 30.0% | |
| !! | TGATCCATCATTGATTCAAT+TGG | - | chr6_2:3978157-3978176 | None:intergenic | 30.0% |
| AGAATTCATTGCAGTTAATC+AGG | - | chr6_2:3978215-3978234 | None:intergenic | 30.0% | |
| AGATGAATGACATTTGCAAT+TGG | - | chr6_2:3978286-3978305 | None:intergenic | 30.0% | |
| TATTATGGCAAGTATTAGTG+TGG | + | chr6_2:3976275-3976294 | Msa0905730:exon | 30.0% | |
| GAAGATGAAGATGGTAATTA+AGG | - | chr6_2:3976477-3976496 | None:intergenic | 30.0% | |
| !! | TTAGAATCATTGGTTTGGAT+TGG | - | chr6_2:3976499-3976518 | None:intergenic | 30.0% |
| ! | TTGTGTTAGAATCATTGGTT+TGG | - | chr6_2:3976504-3976523 | None:intergenic | 30.0% |
| !! | TGTTTAGAGTTTCCTTTTTC+AGG | - | chr6_2:3976606-3976625 | None:intergenic | 30.0% |
| TTACGTTGCAAACCTTTATT+TGG | + | chr6_2:3976714-3976733 | Msa0905730:intron | 30.0% | |
| !!! | CACTTTTAGAACTATGTGTA+TGG | + | chr6_2:3976814-3976833 | Msa0905730:intron | 30.0% |
| AGAAAAAAATGTGGTCAATG+CGG | + | chr6_2:3976945-3976964 | Msa0905730:intron | 30.0% | |
| TTATATGTATACAGGAGGAA+TGG | + | chr6_2:3977082-3977101 | Msa0905730:intron | 30.0% | |
| !! | TTCAAGATGAAGCATTGTAT+AGG | - | chr6_2:3977123-3977142 | None:intergenic | 30.0% |
| TATACAATGCTTCATCTTGA+AGG | + | chr6_2:3977122-3977141 | Msa0905730:CDS | 30.0% | |
| TTCAACCAAAAGTAGATGTA+AGG | + | chr6_2:3977145-3977164 | Msa0905730:CDS | 30.0% | |
| ! | CTTAACCTTACATCTACTTT+TGG | - | chr6_2:3977153-3977172 | None:intergenic | 30.0% |
| ! | CATTTTGTAAGCACTTTCAT+TGG | + | chr6_2:3977240-3977259 | Msa0905730:intron | 30.0% |
| ! | GAGGTATTATATATCCAGAA+AGG | + | chr6_2:3977522-3977541 | Msa0905730:CDS | 30.0% |
| CTAATTTGAACTAAGGGATA+AGG | + | chr6_2:3977788-3977807 | Msa0905730:intron | 30.0% | |
| CAATAGTTTAATTCTCATCC+GGG | - | chr6_2:3977835-3977854 | None:intergenic | 30.0% | |
| CTGTCAAAGTTGTAAACAAA+TGG | - | chr6_2:3978110-3978129 | None:intergenic | 30.0% | |
| !! | TGATCCATCATTGATTCAAT+TGG | - | chr6_2:3978157-3978176 | None:intergenic | 30.0% |
| AGAATTCATTGCAGTTAATC+AGG | - | chr6_2:3978215-3978234 | None:intergenic | 30.0% | |
| AGATGAATGACATTTGCAAT+TGG | - | chr6_2:3978286-3978305 | None:intergenic | 30.0% | |
| TGTACTAATAATGGTTGCCA+AGG | - | chr6_2:3976303-3976322 | None:intergenic | 35.0% | |
| CATCATGTTCATCAGTGATT+AGG | + | chr6_2:3976364-3976383 | Msa0905730:CDS | 35.0% | |
| AATGCTTCTATAGCTGAATG+AGG | - | chr6_2:3976403-3976422 | None:intergenic | 35.0% | |
| ! | TTCCTTTTTATGAGTTGCCA+GGG | + | chr6_2:3976430-3976449 | Msa0905730:CDS | 35.0% |
| ! | TTTGGATTGGAAGATGAAGA+TGG | - | chr6_2:3976486-3976505 | None:intergenic | 35.0% |
| GGCTTCCTTTGATCAATATA+TGG | + | chr6_2:3976548-3976567 | Msa0905730:intron | 35.0% | |
| AAAGCAGTGTTTCCTGAAAA+AGG | + | chr6_2:3976591-3976610 | Msa0905730:CDS | 35.0% | |
| AAACTCTAAACAGCTCAATG+AGG | + | chr6_2:3976614-3976633 | Msa0905730:CDS | 35.0% | |
| !! | AAGATGAAGCATTGTATAGG+AGG | - | chr6_2:3977120-3977139 | None:intergenic | 35.0% |
| ! | TTTTCGGATAATACACCGTT+AGG | + | chr6_2:3977325-3977344 | Msa0905730:intron | 35.0% |
| TTTCGGATAATACACCGTTA+GGG | + | chr6_2:3977326-3977345 | Msa0905730:intron | 35.0% | |
| CAATTAAATCCTATCAGACG+AGG | + | chr6_2:3977438-3977457 | Msa0905730:intron | 35.0% | |
| !! | TGTATAAGGTATTGAGTCCT+TGG | - | chr6_2:3977472-3977491 | None:intergenic | 35.0% |
| GTCGTAAGGATCATTGTATA+AGG | - | chr6_2:3977486-3977505 | None:intergenic | 35.0% | |
| ! | ACATCTAAGTTGAAGTCGTA+AGG | - | chr6_2:3977500-3977519 | None:intergenic | 35.0% |
| GACTTCAACTTAGATGTAAG+AGG | + | chr6_2:3977503-3977522 | Msa0905730:CDS | 35.0% | |
| ! | TAGTTGGCTCAAGAATCAAA+TGG | + | chr6_2:3977556-3977575 | Msa0905730:CDS | 35.0% |
| TCAGGAACAAAAGTCATTGT+TGG | - | chr6_2:3977608-3977627 | None:intergenic | 35.0% | |
| AACAGGTATTCAAAACGATG+TGG | + | chr6_2:3977983-3978002 | Msa0905730:intron | 35.0% | |
| CAAATGAAGCAGGAATTTCA+TGG | + | chr6_2:3978009-3978028 | Msa0905730:CDS | 35.0% | |
| ! | TGTTTAGACTGGACTTTTCT+TGG | - | chr6_2:3978076-3978095 | None:intergenic | 35.0% |
| AAAAGTCCAGTCTAAACATG+TGG | + | chr6_2:3978078-3978097 | Msa0905730:exon | 35.0% | |
| TCAGCCAATTGAATCAATGA+TGG | + | chr6_2:3978150-3978169 | Msa0905730:three_prime_UTR | 35.0% | |
| TGTACTAATAATGGTTGCCA+AGG | - | chr6_2:3976303-3976322 | None:intergenic | 35.0% | |
| CATCATGTTCATCAGTGATT+AGG | + | chr6_2:3976364-3976383 | Msa0905730:CDS | 35.0% | |
| AATGCTTCTATAGCTGAATG+AGG | - | chr6_2:3976403-3976422 | None:intergenic | 35.0% | |
| ! | TTCCTTTTTATGAGTTGCCA+GGG | + | chr6_2:3976430-3976449 | Msa0905730:CDS | 35.0% |
| ! | TTTGGATTGGAAGATGAAGA+TGG | - | chr6_2:3976486-3976505 | None:intergenic | 35.0% |
| GGCTTCCTTTGATCAATATA+TGG | + | chr6_2:3976548-3976567 | Msa0905730:intron | 35.0% | |
| AAAGCAGTGTTTCCTGAAAA+AGG | + | chr6_2:3976591-3976610 | Msa0905730:CDS | 35.0% | |
| AAACTCTAAACAGCTCAATG+AGG | + | chr6_2:3976614-3976633 | Msa0905730:CDS | 35.0% | |
| !! | AAGATGAAGCATTGTATAGG+AGG | - | chr6_2:3977120-3977139 | None:intergenic | 35.0% |
| ! | TTTTCGGATAATACACCGTT+AGG | + | chr6_2:3977325-3977344 | Msa0905730:intron | 35.0% |
| TTTCGGATAATACACCGTTA+GGG | + | chr6_2:3977326-3977345 | Msa0905730:intron | 35.0% | |
| CAATTAAATCCTATCAGACG+AGG | + | chr6_2:3977438-3977457 | Msa0905730:intron | 35.0% | |
| !! | TGTATAAGGTATTGAGTCCT+TGG | - | chr6_2:3977472-3977491 | None:intergenic | 35.0% |
| GTCGTAAGGATCATTGTATA+AGG | - | chr6_2:3977486-3977505 | None:intergenic | 35.0% | |
| ! | ACATCTAAGTTGAAGTCGTA+AGG | - | chr6_2:3977500-3977519 | None:intergenic | 35.0% |
| GACTTCAACTTAGATGTAAG+AGG | + | chr6_2:3977503-3977522 | Msa0905730:CDS | 35.0% | |
| ! | TAGTTGGCTCAAGAATCAAA+TGG | + | chr6_2:3977556-3977575 | Msa0905730:CDS | 35.0% |
| TCAGGAACAAAAGTCATTGT+TGG | - | chr6_2:3977608-3977627 | None:intergenic | 35.0% | |
| AACAGGTATTCAAAACGATG+TGG | + | chr6_2:3977983-3978002 | Msa0905730:intron | 35.0% | |
| CAAATGAAGCAGGAATTTCA+TGG | + | chr6_2:3978009-3978028 | Msa0905730:CDS | 35.0% | |
| ! | TGTTTAGACTGGACTTTTCT+TGG | - | chr6_2:3978076-3978095 | None:intergenic | 35.0% |
| AAAAGTCCAGTCTAAACATG+TGG | + | chr6_2:3978078-3978097 | Msa0905730:exon | 35.0% | |
| TCAGCCAATTGAATCAATGA+TGG | + | chr6_2:3978150-3978169 | Msa0905730:three_prime_UTR | 35.0% | |
| CAAGTATTAGTGTGGTTCCT+TGG | + | chr6_2:3976283-3976302 | Msa0905730:CDS | 40.0% | |
| ! | GTTCCTTTTTATGAGTTGCC+AGG | + | chr6_2:3976429-3976448 | Msa0905730:CDS | 40.0% |
| ! | TCCTTTTTATGAGTTGCCAG+GGG | + | chr6_2:3976431-3976450 | Msa0905730:CDS | 40.0% |
| AACACTGCTTTGACTACTCT+TGG | - | chr6_2:3976582-3976601 | None:intergenic | 40.0% | |
| TGCACATTACGGCCAAATAA+AGG | - | chr6_2:3976729-3976748 | None:intergenic | 40.0% | |
| TGTTATATTGCGATTGCGGA+CGG | + | chr6_2:3976998-3977017 | Msa0905730:intron | 40.0% | |
| CTAATGTGATGAGCAATGTG+AGG | - | chr6_2:3977204-3977223 | None:intergenic | 40.0% | |
| TTAAATCCTATCAGACGAGG+TGG | + | chr6_2:3977441-3977460 | Msa0905730:intron | 40.0% | |
| TAAATCCTATCAGACGAGGT+GGG | + | chr6_2:3977442-3977461 | Msa0905730:intron | 40.0% | |
| AAAGGAAGGGAAAGAGTAGT+TGG | + | chr6_2:3977540-3977559 | Msa0905730:CDS | 40.0% | |
| GCATCTCGTAAGATATGTTC+AGG | - | chr6_2:3977626-3977645 | None:intergenic | 40.0% | |
| CTTACGAGATGCATTAGAGT+TGG | + | chr6_2:3977634-3977653 | Msa0905730:CDS | 40.0% | |
| ACTAAGGGATAAGGAGTTTG+AGG | + | chr6_2:3977797-3977816 | Msa0905730:intron | 40.0% | |
| GATGTGGAATCAAATGAAGC+AGG | + | chr6_2:3977999-3978018 | Msa0905730:CDS | 40.0% | |
| AATGGACCACATGTTTAGAC+TGG | - | chr6_2:3978087-3978106 | None:intergenic | 40.0% | |
| AACTTTGACAGCAATTGCTG+AGG | + | chr6_2:3978119-3978138 | Msa0905730:three_prime_UTR | 40.0% | |
| CAAGTATTAGTGTGGTTCCT+TGG | + | chr6_2:3976283-3976302 | Msa0905730:CDS | 40.0% | |
| ! | GTTCCTTTTTATGAGTTGCC+AGG | + | chr6_2:3976429-3976448 | Msa0905730:CDS | 40.0% |
| ! | TCCTTTTTATGAGTTGCCAG+GGG | + | chr6_2:3976431-3976450 | Msa0905730:CDS | 40.0% |
| AACACTGCTTTGACTACTCT+TGG | - | chr6_2:3976582-3976601 | None:intergenic | 40.0% | |
| TGCACATTACGGCCAAATAA+AGG | - | chr6_2:3976729-3976748 | None:intergenic | 40.0% | |
| TGTTATATTGCGATTGCGGA+CGG | + | chr6_2:3976998-3977017 | Msa0905730:intron | 40.0% | |
| CTAATGTGATGAGCAATGTG+AGG | - | chr6_2:3977204-3977223 | None:intergenic | 40.0% | |
| TTAAATCCTATCAGACGAGG+TGG | + | chr6_2:3977441-3977460 | Msa0905730:intron | 40.0% | |
| TAAATCCTATCAGACGAGGT+GGG | + | chr6_2:3977442-3977461 | Msa0905730:intron | 40.0% | |
| AAAGGAAGGGAAAGAGTAGT+TGG | + | chr6_2:3977540-3977559 | Msa0905730:CDS | 40.0% | |
| GCATCTCGTAAGATATGTTC+AGG | - | chr6_2:3977626-3977645 | None:intergenic | 40.0% | |
| CTTACGAGATGCATTAGAGT+TGG | + | chr6_2:3977634-3977653 | Msa0905730:CDS | 40.0% | |
| ACTAAGGGATAAGGAGTTTG+AGG | + | chr6_2:3977797-3977816 | Msa0905730:intron | 40.0% | |
| GATGTGGAATCAAATGAAGC+AGG | + | chr6_2:3977999-3978018 | Msa0905730:CDS | 40.0% | |
| AATGGACCACATGTTTAGAC+TGG | - | chr6_2:3978087-3978106 | None:intergenic | 40.0% | |
| AACTTTGACAGCAATTGCTG+AGG | + | chr6_2:3978119-3978138 | Msa0905730:three_prime_UTR | 40.0% | |
| ACCCCTGGCAACTCATAAAA+AGG | - | chr6_2:3976435-3976454 | None:intergenic | 45.0% | |
| ! | GACTCATCGGTTGCACATTA+CGG | - | chr6_2:3976740-3976759 | None:intergenic | 45.0% |
| AACTGCAATCACGGACTCAT+CGG | - | chr6_2:3976753-3976772 | None:intergenic | 45.0% | |
| TGGCATCACAACTGCAATCA+CGG | - | chr6_2:3976762-3976781 | None:intergenic | 45.0% | |
| TTGCAGTTGTGATGCCATTG+TGG | + | chr6_2:3976765-3976784 | Msa0905730:intron | 45.0% | |
| !!! | GGTTTTAGAGGTCTCCACAA+TGG | - | chr6_2:3976782-3976801 | None:intergenic | 45.0% |
| ATGTGATGAGCAATGTGAGG+TGG | - | chr6_2:3977201-3977220 | None:intergenic | 45.0% | |
| CTACTCTTTCCCTTCCTTTC+TGG | - | chr6_2:3977539-3977558 | None:intergenic | 45.0% | |
| ! | TTGAGGTCTGGTTTCAAACC+CGG | + | chr6_2:3977814-3977833 | Msa0905730:intron | 45.0% |
| ACCCCTGGCAACTCATAAAA+AGG | - | chr6_2:3976435-3976454 | None:intergenic | 45.0% | |
| ! | GACTCATCGGTTGCACATTA+CGG | - | chr6_2:3976740-3976759 | None:intergenic | 45.0% |
| AACTGCAATCACGGACTCAT+CGG | - | chr6_2:3976753-3976772 | None:intergenic | 45.0% | |
| TGGCATCACAACTGCAATCA+CGG | - | chr6_2:3976762-3976781 | None:intergenic | 45.0% | |
| TTGCAGTTGTGATGCCATTG+TGG | + | chr6_2:3976765-3976784 | Msa0905730:intron | 45.0% | |
| !!! | GGTTTTAGAGGTCTCCACAA+TGG | - | chr6_2:3976782-3976801 | None:intergenic | 45.0% |
| ATGTGATGAGCAATGTGAGG+TGG | - | chr6_2:3977201-3977220 | None:intergenic | 45.0% | |
| CTACTCTTTCCCTTCCTTTC+TGG | - | chr6_2:3977539-3977558 | None:intergenic | 45.0% | |
| ! | TTGAGGTCTGGTTTCAAACC+CGG | + | chr6_2:3977814-3977833 | Msa0905730:intron | 45.0% |
| ! | CGCTTGCTAGTCTACCCTAA+CGG | - | chr6_2:3977343-3977362 | None:intergenic | 50.0% |
| ! | GGGATAAGGAGTTTGAGGTC+TGG | + | chr6_2:3977802-3977821 | Msa0905730:intron | 50.0% |
| ! | CGCTTGCTAGTCTACCCTAA+CGG | - | chr6_2:3977343-3977362 | None:intergenic | 50.0% |
| ! | GGGATAAGGAGTTTGAGGTC+TGG | + | chr6_2:3977802-3977821 | Msa0905730:intron | 50.0% |
| GAGCTCCCACCTCGTCTGAT+AGG | - | chr6_2:3977450-3977469 | None:intergenic | 60.0% | |
| GAGCTCCCACCTCGTCTGAT+AGG | - | chr6_2:3977450-3977469 | None:intergenic | 60.0% | |
| CAGACGAGGTGGGAGCTCCA+AGG | + | chr6_2:3977452-3977471 | Msa0905730:intron | 65.0% | |
| CAGACGAGGTGGGAGCTCCA+AGG | + | chr6_2:3977452-3977471 | Msa0905730:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 3976259 | 3978342 | 3976259 | ID=Msa0905730;Name=Msa0905730 |
| chr6_2 | mRNA | 3976259 | 3978342 | 3976259 | ID=Msa0905730-mRNA-1;Parent=Msa0905730;Name=Msa0905730-mRNA-1;_AED=0.05;_eAED=0.05;_QI=20|1|1|1|1|1|5|250|238 |
| chr6_2 | exon | 3976259 | 3976452 | 3976259 | ID=Msa0905730-mRNA-1:exon:1175;Parent=Msa0905730-mRNA-1 |
| chr6_2 | exon | 3976549 | 3976635 | 3976549 | ID=Msa0905730-mRNA-1:exon:1176;Parent=Msa0905730-mRNA-1 |
| chr6_2 | exon | 3977096 | 3977245 | 3977096 | ID=Msa0905730-mRNA-1:exon:1177;Parent=Msa0905730-mRNA-1 |
| chr6_2 | exon | 3977455 | 3977655 | 3977455 | ID=Msa0905730-mRNA-1:exon:1178;Parent=Msa0905730-mRNA-1 |
| chr6_2 | exon | 3977988 | 3978342 | 3977988 | ID=Msa0905730-mRNA-1:exon:1179;Parent=Msa0905730-mRNA-1 |
| chr6_2 | five_prime_UTR | 3976259 | 3976278 | 3976259 | ID=Msa0905730-mRNA-1:five_prime_utr;Parent=Msa0905730-mRNA-1 |
| chr6_2 | CDS | 3976279 | 3976452 | 3976279 | ID=Msa0905730-mRNA-1:cds;Parent=Msa0905730-mRNA-1 |
| chr6_2 | CDS | 3976549 | 3976635 | 3976549 | ID=Msa0905730-mRNA-1:cds;Parent=Msa0905730-mRNA-1 |
| chr6_2 | CDS | 3977096 | 3977245 | 3977096 | ID=Msa0905730-mRNA-1:cds;Parent=Msa0905730-mRNA-1 |
| chr6_2 | CDS | 3977455 | 3977655 | 3977455 | ID=Msa0905730-mRNA-1:cds;Parent=Msa0905730-mRNA-1 |
| chr6_2 | CDS | 3977988 | 3978092 | 3977988 | ID=Msa0905730-mRNA-1:cds;Parent=Msa0905730-mRNA-1 |
| chr6_2 | three_prime_UTR | 3978093 | 3978342 | 3978093 | ID=Msa0905730-mRNA-1:three_prime_utr;Parent=Msa0905730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
