AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1012080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012080 MtrunA17_Chr7g0223631 86.129 620 70 4 1 620 1 604 0.0 1065
Msa1012080 MtrunA17_Chr7g0223711 82.287 621 107 2 1 620 1 619 0.0 1053
Msa1012080 MtrunA17_Chr8g0350731 81.290 620 114 1 1 620 29 646 0.0 1028
Msa1012080 MtrunA17_Chr7g0223751 78.710 620 130 1 1 620 1 618 0.0 1012
Msa1012080 MtrunA17_Chr7g0223701 78.309 627 129 2 1 620 1 627 0.0 994
Msa1012080 MtrunA17_Chr7g0223621 76.221 614 144 1 1 614 1 612 0.0 962
Msa1012080 MtrunA17_Chr7g0223031 74.472 615 155 1 1 615 1 613 0.0 946
Msa1012080 MtrunA17_Chr7g0223731 74.675 616 154 1 1 616 1 614 0.0 944
Msa1012080 MtrunA17_Chr7g0248131 74.359 624 155 4 1 620 1 623 0.0 930
Msa1012080 MtrunA17_Chr7g0223741 73.790 599 154 2 1 598 1 597 0.0 920
Msa1012080 MtrunA17_Chr7g0248151 73.955 622 159 2 1 620 1 621 0.0 916
Msa1012080 MtrunA17_Chr7g0223681 85.660 530 74 1 91 620 2 529 0.0 914
Msa1012080 MtrunA17_Chr2g0293581 67.203 622 198 5 1 618 1 620 0.0 842
Msa1012080 MtrunA17_Chr7g0223781 67.532 616 195 3 1 615 1 612 0.0 842
Msa1012080 MtrunA17_Chr7g0221661 67.480 615 197 2 1 614 1 613 0.0 838
Msa1012080 MtrunA17_Chr7g0223181 66.238 622 199 6 1 617 1 616 0.0 833
Msa1012080 MtrunA17_Chr7g0223801 66.121 611 204 2 1 611 1 608 0.0 832
Msa1012080 MtrunA17_Chr7g0223541 73.358 548 143 2 74 620 31 576 0.0 831
Msa1012080 MtrunA17_Chr5g0427901 65.446 628 203 3 1 616 1 626 0.0 831
Msa1012080 MtrunA17_Chr7g0262821 65.650 623 207 5 1 620 1 619 0.0 826
Msa1012080 MtrunA17_Chr4g0031321 66.450 614 195 6 1 609 1 608 0.0 825
Msa1012080 MtrunA17_Chr4g0031301 66.287 614 196 6 1 609 1 608 0.0 824
Msa1012080 MtrunA17_Chr2g0298851 65.590 619 207 5 1 616 1 616 0.0 821
Msa1012080 MtrunA17_Chr7g0223721 65.534 618 209 3 1 616 1 616 0.0 820
Msa1012080 MtrunA17_Chr7g0223291 65.008 623 211 5 1 620 1 619 0.0 819
Msa1012080 MtrunA17_Chr7g0233311 64.943 619 212 3 1 616 1 617 0.0 816
Msa1012080 MtrunA17_Chr2g0298861 63.968 630 211 5 1 616 1 628 0.0 812
Msa1012080 MtrunA17_Chr7g0223851 64.194 620 218 3 1 618 10 627 0.0 805
Msa1012080 MtrunA17_Chr4g0073741 64.000 625 213 7 1 620 1 618 0.0 803
Msa1012080 MtrunA17_Chr7g0225671 64.239 618 214 4 3 618 12 624 0.0 798
Msa1012080 MtrunA17_Chr4g0040931 63.295 613 221 3 1 611 1 611 0.0 788
Msa1012080 MtrunA17_Chr2g0287631 64.620 619 214 4 1 616 1 617 0.0 783
Msa1012080 MtrunA17_Chr7g0217971 63.866 595 189 3 1 595 1 569 0.0 775
Msa1012080 MtrunA17_Chr7g0223821 63.344 622 217 4 1 615 1 618 0.0 772
Msa1012080 MtrunA17_Chr2g0296391 69.245 530 159 3 1 528 1 528 0.0 754
Msa1012080 MtrunA17_Chr7g0233301 60.743 619 207 3 1 616 1 586 0.0 748
Msa1012080 MtrunA17_Chr4g0012541 60.484 620 232 4 1 618 1 609 0.0 743
Msa1012080 MtrunA17_Chr8g0390821 58.060 670 210 9 1 616 1 653 0.0 738
Msa1012080 MtrunA17_Chr7g0223831 60.586 614 208 5 1 611 1 583 0.0 731
Msa1012080 MtrunA17_Chr7g0215261 59.446 614 210 5 1 611 1 578 0.0 715
Msa1012080 MtrunA17_Chr6g0462601 57.835 619 255 4 1 617 1 615 0.0 700
Msa1012080 MtrunA17_Chr6g0462681 56.869 626 253 7 1 618 1 617 0.0 699
Msa1012080 MtrunA17_Chr2g0293601 66.346 520 137 3 1 518 1 484 0.0 699
Msa1012080 MtrunA17_Chr7g0228281 57.097 620 217 5 1 618 62 634 0.0 690
Msa1012080 MtrunA17_Chr2g0331381 63.296 534 133 3 10 543 7 477 0.0 685
Msa1012080 MtrunA17_Chr6g0462711 59.380 581 226 5 8 581 9 586 0.0 679
Msa1012080 MtrunA17_Chr6g0462771 58.103 580 232 5 8 580 8 583 0.0 660
Msa1012080 MtrunA17_Chr6g0462641 56.899 587 242 5 1 580 1 583 0.0 655
Msa1012080 MtrunA17_Chr2g0284681 57.473 562 226 8 9 561 8 565 0.0 638
Msa1012080 MtrunA17_Chr8g0388671 53.807 591 260 9 7 592 36 618 0.0 617
Msa1012080 MtrunA17_Chr8g0388761 53.299 591 263 9 7 592 36 618 0.0 617
Msa1012080 MtrunA17_Chr1g0166551 52.787 610 173 4 9 616 5 501 0.0 604
Msa1012080 MtrunA17_Chr2g0293561 74.064 374 97 0 1 374 1 374 0.0 602
Msa1012080 MtrunA17_Chr6g0462611 54.348 552 237 6 74 618 22 565 0.0 584
Msa1012080 MtrunA17_Chr2g0299921 70.305 394 113 2 3 396 1023 1412 0.0 570
Msa1012080 MtrunA17_Chr2g0299921 68.274 394 120 3 3 395 1407 1796 4.87e-170 529
Msa1012080 MtrunA17_Chr2g0299791 69.152 389 116 2 1 389 1034 1418 0.0 553
Msa1012080 MtrunA17_Chr2g0299851 67.436 390 123 2 1 390 1030 1415 0.0 553
Msa1012080 MtrunA17_Chr2g0299821 66.329 395 129 2 1 393 1 393 0.0 545
Msa1012080 MtrunA17_Chr2g0299821 49.485 97 38 4 453 540 390 484 3.16e-17 85.1
Msa1012080 MtrunA17_Chr2g0299881 66.071 392 125 4 2 389 1031 1418 1.39e-170 524
Msa1012080 MtrunA17_Chr2g0299881 56.716 67 29 0 184 250 1409 1475 5.47e-17 85.5
Msa1012080 MtrunA17_Chr2g0293271 58.028 436 111 4 21 456 43 406 2.26e-170 491
Msa1012080 MtrunA17_Chr6g0462861 45.960 594 283 11 1 581 1 569 5.36e-163 481
Msa1012080 MtrunA17_Chr2g0279901 47.312 558 268 12 10 560 57 595 7.18e-159 471
Msa1012080 MtrunA17_Chr4g0049501 46.237 558 275 11 10 560 54 593 4.44e-156 464
Msa1012080 MtrunA17_Chr1g0151991 72.165 291 81 0 1 291 1 291 7.24e-154 444
Msa1012080 MtrunA17_Chr7g0245521 74.359 273 70 0 1 273 1 273 1.09e-152 440
Msa1012080 MtrunA17_Chr2g0277021 44.426 592 302 15 10 593 72 644 9.92e-147 441
Msa1012080 MtrunA17_Chr7g0223761 52.547 373 132 3 241 611 3 332 3.19e-122 365
Msa1012080 MtrunA17_Chr7g0245531 58.730 315 127 2 305 618 2 314 4.09e-121 361
Msa1012080 MtrunA17_Chr7g0223671 84.865 185 28 0 74 258 8 192 8.98e-114 338
Msa1012080 MtrunA17_Chr1g0152001 56.040 298 127 3 315 611 1 295 6.75e-105 320
Msa1012080 MtrunA17_Chr1g0188601 75.393 191 47 0 92 282 1 191 2.80e-103 311
Msa1012080 MtrunA17_Chr6g0462631 50.606 330 114 5 91 416 13 297 1.31e-101 310
Msa1012080 MtrunA17_Chr6g0462751 47.813 343 119 4 74 413 19 304 1.12e-96 298
Msa1012080 MtrunA17_Chr1g0188611 55.219 297 122 4 322 616 1 288 6.13e-87 272
Msa1012080 MtrunA17_Chr5g0394391 34.851 505 301 13 8 495 28 521 2.84e-79 261
Msa1012080 MtrunA17_Chr6g0462791 67.416 178 57 1 109 286 2 178 5.91e-79 248
Msa1012080 MtrunA17_Chr7g0223771 73.856 153 40 0 93 245 1 153 3.03e-78 245
Msa1012080 MtrunA17_Chr4g0004331 34.389 442 269 6 10 436 4 439 4.98e-75 256
Msa1012080 MtrunA17_Chr2g0331901 33.636 440 275 6 10 436 4 439 1.63e-74 255
Msa1012080 MtrunA17_Chr4g0046881 75.172 145 33 1 131 275 10 151 4.03e-70 223
Msa1012080 MtrunA17_Chr3g0098761 33.333 420 274 5 10 428 4 418 1.36e-69 240
Msa1012080 MtrunA17_Chr5g0444001 33.100 429 277 6 10 432 4 428 3.25e-69 234
Msa1012080 MtrunA17_Chr7g0223861 74.046 131 34 0 78 208 4 134 1.96e-63 205
Msa1012080 MtrunA17_Chr4g0064621 33.525 522 312 15 8 504 139 650 1.41e-58 208
Msa1012080 MtrunA17_Chr6g0462701 53.889 180 59 1 91 270 13 168 1.75e-55 185
Msa1012080 MtrunA17_Chr3g0120101 28.315 445 292 8 10 430 27 468 8.27e-54 197
Msa1012080 MtrunA17_Chr4g0060241 29.688 512 320 16 8 500 19 509 1.69e-50 183
Msa1012080 MtrunA17_Chr5g0394221 39.273 275 155 6 291 560 61 328 9.90e-50 176
Msa1012080 MtrunA17_Chr7g0245541 46.535 202 105 2 417 617 1 200 4.20e-49 169
Msa1012080 MtrunA17_Chr4g0046871 74.286 105 27 0 333 437 3 107 2.33e-47 161
Msa1012080 MtrunA17_Chr6g0481391 64.754 122 40 1 38 159 13 131 3.60e-47 162
Msa1012080 MtrunA17_Chr5g0442171 33.433 335 193 11 170 489 1 320 1.78e-42 155
Msa1012080 MtrunA17_Chr7g0223691 90.411 73 7 0 1 73 1 73 7.04e-42 145
Msa1012080 MtrunA17_Chr5g0394231 36.638 232 94 5 74 304 5 184 2.00e-41 148
Msa1012080 MtrunA17_Chr6g0462691 52.083 144 66 2 322 464 1 142 4.48e-41 146
Msa1012080 MtrunA17_Chr1g0188591 78.082 73 16 0 1 73 1 73 4.50e-33 122
Msa1012080 MtrunA17_Chr6g0481381 71.622 74 21 0 176 249 1 74 5.17e-30 116
Msa1012080 MtrunA17_Chr6g0481381 41.053 95 55 1 516 609 75 169 2.53e-12 65.9
Msa1012080 MtrunA17_Chr6g0462621 75.342 73 16 1 1 73 1 71 6.41e-30 112
Msa1012080 MtrunA17_Chr7g0223661 52.500 120 14 1 315 434 1 77 2.12e-28 108
Msa1012080 MtrunA17_Chr7g0223791 69.512 82 17 3 56 137 18 91 1.21e-27 109
Msa1012080 MtrunA17_Chr7g0223791 34.899 149 77 3 428 574 51 181 1.26e-16 78.2
Msa1012080 MtrunA17_Chr7g0223881 56.627 83 35 1 281 363 2 83 5.63e-25 99.0
Msa1012080 MtrunA17_Chr7g0221651 50.000 84 42 0 215 298 1 84 1.23e-22 92.4
Msa1012080 MtrunA17_Chr7g0223871 35.156 128 82 1 492 618 7 134 8.15e-17 77.8
Msa1012080 MtrunA17_Chr6g0462801 54.545 66 25 1 322 382 1 66 7.93e-15 69.7
Msa1012080 MtrunA17_Chr2g0299891 72.093 43 12 0 315 357 1 43 3.92e-14 67.8
Msa1012080 MtrunA17_Chr2g0284661 50.704 71 34 1 368 437 61 131 1.02e-13 68.9
Msa1012080 MtrunA17_Chr2g0284661 50.820 61 28 1 225 283 5 65 1.08e-11 63.2
Msa1012080 MtrunA17_Chr5g0442161 29.936 157 103 4 5 157 24 177 1.09e-12 67.0
Msa1012080 MtrunA17_Chr4g0064651 40.000 95 53 3 397 489 29 121 2.42e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1012080 AT3G12580.1 65.920 625 202 6 1 620 1 619 0.0 833
Msa1012080 AT5G02500.1 64.791 622 208 6 1 617 1 616 0.0 819
Msa1012080 AT3G09440.1 65.113 622 206 6 1 617 1 616 0.0 811
Msa1012080 AT3G09440.4 65.113 622 206 6 1 617 1 616 0.0 811
Msa1012080 AT3G09440.2 65.113 622 206 6 1 617 1 616 0.0 811
Msa1012080 AT3G09440.3 65.113 622 206 6 1 617 1 616 0.0 811
Msa1012080 AT5G02490.1 63.987 622 213 6 1 617 1 616 0.0 809
Msa1012080 AT1G56410.1 63.403 623 219 6 1 620 1 617 0.0 796
Msa1012080 AT1G16030.1 63.242 623 221 6 1 620 1 618 0.0 787
Msa1012080 AT5G28540.1 53.618 608 269 9 7 609 35 634 0.0 630
Msa1012080 AT5G42020.1 53.618 608 269 9 7 609 35 634 0.0 629
Msa1012080 AT5G42020.3 53.618 608 269 9 7 609 40 639 0.0 628
Msa1012080 AT5G02500.2 74.807 389 96 1 1 389 1 387 0.0 619
Msa1012080 AT5G02500.2 38.614 101 62 0 517 617 386 486 4.67e-13 72.4
Msa1012080 AT1G09080.2 52.358 615 281 8 7 617 40 646 0.0 600
Msa1012080 AT1G09080.1 52.358 615 281 8 7 617 50 656 0.0 599
Msa1012080 AT5G42020.2 48.600 607 246 10 7 609 35 579 0.0 541
Msa1012080 AT5G09590.1 46.057 558 276 11 10 560 60 599 3.00e-153 457
Msa1012080 AT4G37910.1 46.237 558 275 11 10 560 55 594 5.53e-149 446
Msa1012080 AT4G37910.2 46.237 558 275 11 10 560 55 594 5.53e-149 446
Msa1012080 AT4G24280.1 44.519 593 302 15 10 594 81 654 6.64e-147 442
Msa1012080 AT5G49910.1 43.845 593 305 15 10 593 81 654 1.80e-144 436
Msa1012080 AT1G11660.4 30.031 646 382 15 10 598 4 636 1.46e-79 267
Msa1012080 AT1G11660.3 30.031 646 382 15 10 598 4 636 1.46e-79 267
Msa1012080 AT1G11660.1 30.031 646 382 15 10 598 4 636 1.46e-79 267
Msa1012080 AT1G79930.2 34.318 440 272 5 10 436 4 439 1.93e-77 262
Msa1012080 AT1G79930.1 34.318 440 272 5 10 436 4 439 4.28e-77 262
Msa1012080 AT1G79920.1 34.389 442 269 6 10 436 4 439 1.42e-76 259
Msa1012080 AT1G79920.3 34.389 442 269 6 10 436 4 439 1.59e-76 258
Msa1012080 AT1G79920.2 34.389 442 269 6 10 436 4 439 1.59e-76 258
Msa1012080 AT1G79920.4 34.389 442 269 6 10 436 4 439 1.59e-76 258
Msa1012080 AT1G11660.2 30.542 609 355 14 47 598 2 599 3.73e-73 249
Msa1012080 AT2G32120.1 33.010 515 312 14 8 508 29 524 3.74e-70 237
Msa1012080 AT2G32120.2 33.010 515 312 14 8 508 29 524 3.74e-70 237
Msa1012080 AT4G16660.2 28.000 450 294 9 6 430 47 491 3.77e-54 199
Msa1012080 AT4G16660.1 28.000 450 294 9 6 430 23 467 4.20e-54 198

Find 145 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTACTGTGAAGTAATTT+TGG 0.095272 7_1:-17148701 Msa1012080:five_prime_UTR
CTCAACCTCCTCAAGGCTTT+TGG 0.126998 7_1:+17146034 None:intergenic
TTTGAATTGGCTTCAAAATT+TGG 0.143460 7_1:+17147377 None:intergenic
TCTACTGTTGTGGCCCTTTA+AGG 0.152881 7_1:-17146554 Msa1012080:CDS
AACCCAATCAACACTGTATT+TGG 0.172484 7_1:-17147120 Msa1012080:intron
TCCTTGTTGGTGGTTCTTCT+AGG 0.229614 7_1:-17145799 Msa1012080:CDS
TGTAGTGTATAGTAGTATTT+TGG 0.234038 7_1:+17147414 None:intergenic
TGGCCCTTTAAGGTCATTTC+CGG 0.243786 7_1:-17146544 Msa1012080:CDS
GCAGATGCAAAGAGGTTAAT+TGG 0.250254 7_1:-17146610 Msa1012080:intron
CTGTCTTGTTGATGCTAAAA+TGG 0.256497 7_1:-17145846 Msa1012080:CDS
TGTAATAGCTGCCTCACTTT+AGG 0.285625 7_1:+17145773 None:intergenic
ATTACAATAACTAATGAAAA+TGG 0.292577 7_1:-17145305 Msa1012080:CDS
CTTACTCTTGTGTTGGAGTA+TGG 0.293550 7_1:-17147269 Msa1012080:CDS
ATCTGATGGGGAAAGTGATT+TGG 0.295466 7_1:-17144964 Msa1012080:three_prime_UTR
CCTTGAAATTCTCAGCTTCC+TGG 0.297903 7_1:+17145249 None:intergenic
AGAAGATACCTTTGTGTTTG+TGG 0.330848 7_1:-17145048 Msa1012080:CDS
CCTGATGAGGCTGTTGCTTA+TGG 0.340665 7_1:-17145710 Msa1012080:CDS
AGCACCGGAAATGACCTTAA+AGG 0.349583 7_1:+17146540 None:intergenic
ATTCAAATCTTCTCTAGAAA+TGG 0.358210 7_1:-17147361 Msa1012080:five_prime_UTR
GTAATCACTGCATTCTTAAC+AGG 0.359063 7_1:+17146397 None:intergenic
CAGCATCACCAATCAGCCTT+TGG 0.360159 7_1:+17147163 None:intergenic
GATTCAATACCTTCAACCTT+AGG 0.360474 7_1:+17145515 None:intergenic
GTCGATGATGTTGTCCTTGT+TGG 0.366819 7_1:-17145812 Msa1012080:CDS
CTGCCTGTGAGAGGGCAAAA+AGG 0.378093 7_1:-17146009 Msa1012080:CDS
TTGATCTTCTCTTTGTCTAC+AGG 0.380282 7_1:+17145116 None:intergenic
AGTTGAAGCAAGAAATGCTT+TGG 0.381737 7_1:-17145201 Msa1012080:CDS
TTACCAAATACAGTGTTGAT+TGG 0.383287 7_1:+17147117 None:intergenic
TGCTTATGGTGCAGCTGTCC+AGG 0.386356 7_1:-17145696 Msa1012080:CDS
CATATTCAATTGCTCAAACT+TGG 0.389972 7_1:+17145904 None:intergenic
CCATAAGCAACAGCCTCATC+AGG 0.392319 7_1:+17145710 None:intergenic
CCCAAAATTACTTCACAGTA+AGG 0.393135 7_1:+17148700 None:intergenic
TTTCTAGAGAAGATTTGAAT+TGG 0.395670 7_1:+17147364 None:intergenic
ACATCCCGCAGTACCAAGTT+TGG 0.398325 7_1:+17145641 None:intergenic
AAGAACAAAGAGGATATTAG+TGG 0.402789 7_1:-17146061 Msa1012080:CDS
ATTCAATACCTTCAACCTTA+GGG 0.405497 7_1:+17145516 None:intergenic
TAAACTTGTGTCTTCTTGAA+TGG 0.405865 7_1:+17145545 None:intergenic
AATATCACCTGCATCTTTAG+TGG 0.406579 7_1:+17146339 None:intergenic
TACCAAATACAGTGTTGATT+GGG 0.407934 7_1:+17147118 None:intergenic
AGCATCACCAATCAGCCTTT+GGG 0.410141 7_1:+17147164 None:intergenic
CACTAAGAATGTTCCAAACT+TGG 0.411003 7_1:-17145654 Msa1012080:CDS
ACTGCGGCGGCTCTTGCATA+TGG 0.414217 7_1:-17146280 Msa1012080:CDS
ACAAATTCCCAAAGGCTGAT+TGG 0.415818 7_1:-17147171 Msa1012080:CDS
TTTGATGTCAAGGCCACTGC+TGG 0.427311 7_1:-17146154 Msa1012080:CDS
AAAGATGCAGGTGATATTGC+TGG 0.430331 7_1:-17146334 Msa1012080:CDS
GCACCGGAAATGACCTTAAA+GGG 0.431309 7_1:+17146541 None:intergenic
CTCTTGTGTTGGAGTATGGC+AGG 0.433498 7_1:-17147265 Msa1012080:CDS
ACACAAAGGTATCTTCTTGC+TGG 0.438966 7_1:+17145054 None:intergenic
AGAGATTGAGAGAATGATCC+AGG 0.439899 7_1:-17145267 Msa1012080:CDS
AGTTGAAATTGTGGTTTATG+AGG 0.448441 7_1:-17145489 Msa1012080:CDS
TGCTTCCTTGTGTATAATGT+TGG 0.455024 7_1:-17144913 Msa1012080:three_prime_UTR
TGAATCTTTAGTTGAAATTG+TGG 0.458803 7_1:-17145498 Msa1012080:CDS
ATGAAAATGGAAGATTATCA+AGG 0.459072 7_1:-17145292 Msa1012080:CDS
TTTATCTTTGACCTTGGCGG+TGG 0.462714 7_1:-17146217 Msa1012080:CDS
TATTATACCCCTAAGGTTGA+AGG 0.468708 7_1:-17145524 Msa1012080:CDS
TTGTAGTTCACAAGAATTGT+CGG 0.473999 7_1:+17146508 None:intergenic
TTATGAGTGTGGTGATTCCT+AGG 0.478815 7_1:-17145580 Msa1012080:CDS
ATCAACAAAGGTTAATCTGA+TGG 0.486795 7_1:-17144978 Msa1012080:exon
GACCTAGATGCTATATATCA+AGG 0.488303 7_1:-17145956 Msa1012080:CDS
TTACGATATTAGTTCTGTCA+TGG 0.490050 7_1:+17144776 None:intergenic
GAAATTATTCACAATGATCA+AGG 0.492859 7_1:-17147225 Msa1012080:CDS
GGCACGACTTACTCTTGTGT+TGG 0.494525 7_1:-17147276 Msa1012080:CDS
TGCTTTGCTATAGATGCTAA+TGG 0.495524 7_1:-17145377 Msa1012080:CDS
TCACTTGCTATCGATACAAA+AGG 0.501837 7_1:-17145608 Msa1012080:CDS
CCAGGAAGCTGAGAATTTCA+AGG 0.503257 7_1:-17145249 Msa1012080:CDS
TCAACAAAGGTTAATCTGAT+GGG 0.507506 7_1:-17144977 Msa1012080:exon
TGTGAATCATTAAAATAAGC+AGG 0.511579 7_1:+17146370 None:intergenic
AATGGTACAGAAGTATTCCT+AGG 0.513462 7_1:+17145563 None:intergenic
TGTTCCAAACTTGGTACTGC+GGG 0.515956 7_1:-17145645 Msa1012080:CDS
ACACACTAGAGAGGAGAGAA+GGG 0.524014 7_1:-17148596 Msa1012080:five_prime_UTR
CACACACTAGAGAGGAGAGA+AGG 0.526680 7_1:-17148597 Msa1012080:five_prime_UTR
GGAAGGCCACGGGGAGCAAG+AGG 0.526733 7_1:+17145410 None:intergenic
AAATAAGGTCTTTGATGTCA+AGG 0.528245 7_1:-17146164 Msa1012080:CDS
ATAGCAAAGCATACTGTGAA+AGG 0.530946 7_1:+17145389 None:intergenic
TGTCGGTTTGTCATCAGCAC+CGG 0.535167 7_1:+17146525 None:intergenic
GATGATGTTGTCCTTGTTGG+TGG 0.537032 7_1:-17145809 Msa1012080:CDS
GTTGAAATTGTGGTTTATGA+GGG 0.537635 7_1:-17145488 Msa1012080:CDS
TACTGTGAAAGGAAGGCCAC+GGG 0.546941 7_1:+17145400 None:intergenic
ACAAGTTTATTATACCCCTA+AGG 0.550516 7_1:-17145531 Msa1012080:CDS
TCTTTGAGTGAGTAGACTTG+AGG 0.554700 7_1:-17144822 Msa1012080:three_prime_UTR
CGAAGAGCCACTAAAGATGC+AGG 0.564548 7_1:-17146346 Msa1012080:CDS
GTTGCGATCGGAATTGACCT+TGG 0.566821 7_1:-17147297 Msa1012080:CDS
TACCTTGATATATAGCATCT+AGG 0.567285 7_1:+17145954 None:intergenic
TATGCAAGAGCCGCCGCAGT+CGG 0.567463 7_1:+17146283 None:intergenic
GCAAGTGAGAACAACTTGCT+TGG 0.568418 7_1:-17145452 Msa1012080:CDS
ATGCAAAGAGGTTAATTGGA+AGG 0.571352 7_1:-17146606 Msa1012080:CDS
CAATCTCTCGCATCTGTGAG+AGG 0.572867 7_1:+17146440 None:intergenic
GGCAGTTCTCAACCTCCTCA+AGG 0.573614 7_1:+17146027 None:intergenic
AAAAGGAGATATTATGAGTG+TGG 0.581319 7_1:-17145591 Msa1012080:CDS
TAGGTGAGTGTCTCCAGCAG+TGG 0.584341 7_1:+17146141 None:intergenic
CAAAGCATACTGTGAAAGGA+AGG 0.584400 7_1:+17145393 None:intergenic
CTTCACTAAGCAAAACAGCC+TGG 0.589833 7_1:+17145678 None:intergenic
TGAAAATGGAAGATTATCAA+GGG 0.589866 7_1:-17145291 Msa1012080:CDS
TCTATTAAACGTCTCTGCAG+TGG 0.590927 7_1:-17145354 Msa1012080:CDS
TCTTGTGAACTACAAGGGTG+AGG 0.592468 7_1:-17146500 Msa1012080:CDS
TTCATTCACTTGAAGCACAA+TGG 0.592831 7_1:-17147337 Msa1012080:exon
TCAGAGAGAAGAGAAGAGCA+TGG 0.595929 7_1:-17148564 Msa1012080:five_prime_UTR
TATAGCATCTAGGTCAATTG+TGG 0.597011 7_1:+17145964 None:intergenic
GGTTGAGAACTGCCTGTGAG+AGG 0.597343 7_1:-17146018 Msa1012080:CDS
AAATATGAAGGAGTTGCGAT+CGG 0.598814 7_1:-17147309 Msa1012080:CDS
GACAATTCTTGTGAACTACA+AGG 0.599895 7_1:-17146506 Msa1012080:CDS
CTTCTAGGATTCCTAAAGTG+AGG 0.600875 7_1:-17145784 Msa1012080:CDS
TTTGTGAAAGCAACACAAGA+AGG 0.603082 7_1:+17147189 None:intergenic
GTTGAGAACTGCCTGTGAGA+GGG 0.603407 7_1:-17146017 Msa1012080:CDS
TTCAATACCTTCAACCTTAG+GGG 0.604563 7_1:+17145517 None:intergenic
TAAAGCATTGCAAATCAACA+AGG 0.610318 7_1:-17148647 Msa1012080:five_prime_UTR
TTGCTTTCACAAATTCCCAA+AGG 0.615627 7_1:-17147179 Msa1012080:CDS
CATCAAAAGTTCCACCGCCA+AGG 0.617660 7_1:+17146206 None:intergenic
ACTTTGTGAAGGAGTTCAAG+AGG 0.618825 7_1:-17146084 Msa1012080:CDS
CAGTAGATCATTCTGAACAA+TGG 0.620189 7_1:+17146570 None:intergenic
CACAAGAGTAAGTCGTGCCA+AGG 0.620788 7_1:+17147280 None:intergenic
CAACAAAGGTTAATCTGATG+GGG 0.621557 7_1:-17144976 Msa1012080:exon
ATACTGTGAAAGGAAGGCCA+CGG 0.623929 7_1:+17145399 None:intergenic
GATCAACTCAGCAATGACCA+AGG 0.625695 7_1:-17145099 Msa1012080:CDS
TTCAGAATGATCTACTGTTG+TGG 0.632222 7_1:-17146564 Msa1012080:CDS
TCGGTGAAATTGAATTCAAG+AGG 0.632435 7_1:-17148676 Msa1012080:five_prime_UTR
AGAACAAAGAGGATATTAGT+GGG 0.633089 7_1:-17146060 Msa1012080:CDS
CATAAGCAACAGCCTCATCA+GGG 0.634330 7_1:+17145711 None:intergenic
CAAGAGCATTAACCCTGATG+AGG 0.639574 7_1:-17145723 Msa1012080:CDS
GTATCGATAGCAAGTGACAA+AGG 0.642384 7_1:+17145614 None:intergenic
AAAGTTCCTCTTGCTCCCCG+TGG 0.642810 7_1:-17145416 Msa1012080:CDS
AATGGTGAATCACTTTGTGA+AGG 0.643840 7_1:-17146095 Msa1012080:CDS
GTTCAAGAGGAAGAACAAAG+AGG 0.645922 7_1:-17146071 Msa1012080:CDS
TCCTAGAAGAACCACCAACA+AGG 0.646014 7_1:+17145798 None:intergenic
ATCAACTCAGCAATGACCAA+GGG 0.650698 7_1:-17145098 Msa1012080:CDS
GATAATCAATGAACCGACTG+CGG 0.651446 7_1:-17146296 Msa1012080:CDS
TGAAGACTTTGATAACAGAA+TGG 0.652022 7_1:-17146113 Msa1012080:CDS
ACACACTACACACACTAGAG+AGG 0.653071 7_1:-17148605 Msa1012080:five_prime_UTR
AATCAATGAACCGACTGCGG+CGG 0.655884 7_1:-17146293 Msa1012080:CDS
ATGTTCCAAACTTGGTACTG+CGG 0.659079 7_1:-17145646 Msa1012080:CDS
GCAGGAGCAGAACGATCGTG+TGG 0.659349 7_1:-17147247 Msa1012080:CDS
GCTATGAAGAAGATCAACAA+AGG 0.662134 7_1:-17144990 Msa1012080:CDS
ACAATTCTTGTGAACTACAA+GGG 0.663306 7_1:-17146505 Msa1012080:CDS
TATCAAAGTCTTCACCACCT+AGG 0.666368 7_1:+17146122 None:intergenic
GTGGGAACCCAAAAGCCTTG+AGG 0.668086 7_1:-17146042 Msa1012080:CDS
GGAACCCAAAAGCCTTGAGG+AGG 0.669169 7_1:-17146039 Msa1012080:CDS
AAAGCATTGCAAATCAACAA+GGG 0.678487 7_1:-17148646 Msa1012080:five_prime_UTR
CACACTAGAGAGGAGAGAAG+GGG 0.681269 7_1:-17148595 Msa1012080:five_prime_UTR
AAACTCCAACATTATACACA+AGG 0.681959 7_1:+17144908 None:intergenic
ACTGCTGGAGACACTCACCT+AGG 0.685344 7_1:-17146139 Msa1012080:CDS
TTGCTGGTCTCAATGTAATG+CGG 0.689400 7_1:-17146318 Msa1012080:CDS
GCTGGAGACACTCACCTAGG+TGG 0.705705 7_1:-17146136 Msa1012080:CDS
GACACTTTCATACGACACTG+AGG 0.726186 7_1:-17145987 Msa1012080:CDS
ACAGATGCGAGAGATTGCAG+AGG 0.728184 7_1:-17146434 Msa1012080:CDS
TCTGCAGTGGAAGAAACCAG+TGG 0.733951 7_1:-17145341 Msa1012080:CDS
ACTGTGAAAGGAAGGCCACG+GGG 0.773300 7_1:+17145401 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTAATAGTTTTAGTAAA+GGG - chr7_1:17145400-17145419 Msa1012080:CDS 10.0%
!! TAAATTAATCTTAATTAGTT+TGG - chr7_1:17145608-17145627 Msa1012080:CDS 10.0%
!!! ACTAAAACTATTAATTTGTT+TGG + chr7_1:17145397-17145416 None:intergenic 15.0%
!!! CAAATTAATAGTTTTAGTAA+AGG - chr7_1:17145399-17145418 Msa1012080:CDS 15.0%
!! ATTACAATAACTAATGAAAA+TGG - chr7_1:17148170-17148189 Msa1012080:intron 15.0%
!! TAACAAGATTAAAAAGATTT+AGG + chr7_1:17148632-17148651 None:intergenic 15.0%
!!! TTAAATTTGTCATCTTTTGT+TGG - chr7_1:17144949-17144968 Msa1012080:three_prime_UTR 20.0%
!!! TGAATAGCTAACTATTTTTT+AGG - chr7_1:17145030-17145049 Msa1012080:CDS 20.0%
!!! GAATAGCTAACTATTTTTTA+GGG - chr7_1:17145031-17145050 Msa1012080:CDS 20.0%
!!! ATGTATTTTATCACATGATT+AGG - chr7_1:17145142-17145161 Msa1012080:CDS 20.0%
!! TGATTGAAAGACTAAAATTA+AGG + chr7_1:17145277-17145296 None:intergenic 20.0%
!!! ATCAAACAAAGTGTTAATTT+AGG - chr7_1:17145347-17145366 Msa1012080:CDS 20.0%
!! TTAATTAGAACTAGACATAA+AGG - chr7_1:17145448-17145467 Msa1012080:CDS 20.0%
!! AACAATTAACATACTAACAT+CGG + chr7_1:17145837-17145856 None:intergenic 20.0%
!!! TATTATAGATCACCATTTTA+GGG - chr7_1:17146550-17146569 Msa1012080:CDS 20.0%
!!! TTACTTTCTAAAAACATTCT+TGG - chr7_1:17146578-17146597 Msa1012080:CDS 20.0%
!!! TTCATTTTAAATTGCTAACA+TGG - chr7_1:17146603-17146622 Msa1012080:CDS 20.0%
!!! TCATTTTAAATTGCTAACAT+GGG - chr7_1:17146604-17146623 Msa1012080:CDS 20.0%
!!! ATTTTTGGAAGTTTTGAAAA+TGG + chr7_1:17146725-17146744 None:intergenic 20.0%
!! GTTGATATGAAAATGAAAAT+AGG - chr7_1:17146819-17146838 Msa1012080:intron 20.0%
!!! AATATTTTTATCTTTGACCT+TGG - chr7_1:17147252-17147271 Msa1012080:CDS 20.0%
!!! TATTACAAGAGTTTTTCAAA+GGG - chr7_1:17147718-17147737 Msa1012080:intron 20.0%
!!! CTAACTATTTTTTAGGGTTT+AGG - chr7_1:17145037-17145056 Msa1012080:CDS 25.0%
! AACTGATTATTAACATGCAA+AGG + chr7_1:17145178-17145197 None:intergenic 25.0%
!! GAAAAGCATAAAGTGTAAAA+AGG + chr7_1:17145305-17145324 None:intergenic 25.0%
!!! AATAGTTTTAGTAAAGGGAT+TGG - chr7_1:17145405-17145424 Msa1012080:CDS 25.0%
!! TACTTGTTAATTAATCCATG+TGG - chr7_1:17145631-17145650 Msa1012080:CDS 25.0%
!!! TGTATAGTAGTATTTTGGAA+AGG + chr7_1:17146059-17146078 None:intergenic 25.0%
!! TGTAGTGTATAGTAGTATTT+TGG + chr7_1:17146064-17146083 None:intergenic 25.0%
!! TTTGAATTGGCTTCAAAATT+TGG + chr7_1:17146101-17146120 None:intergenic 25.0%
!! TTTCTAGAGAAGATTTGAAT+TGG + chr7_1:17146114-17146133 None:intergenic 25.0%
!! ATTCAAATCTTCTCTAGAAA+TGG - chr7_1:17146114-17146133 Msa1012080:CDS 25.0%
! ACAATGGCAAAAAAATATGA+AGG - chr7_1:17146154-17146173 Msa1012080:CDS 25.0%
! GAAATTATTCACAATGATCA+AGG - chr7_1:17146250-17146269 Msa1012080:CDS 25.0%
! AACTAAAAATTAAACAGTGC+TGG + chr7_1:17146402-17146421 None:intergenic 25.0%
!! GTATTATAGATCACCATTTT+AGG - chr7_1:17146549-17146568 Msa1012080:CDS 25.0%
!! GGTAACATATTTGACATTTT+TGG + chr7_1:17146740-17146759 None:intergenic 25.0%
! TTTGCATCTGCAAAAATTAA+GGG + chr7_1:17146856-17146875 None:intergenic 25.0%
! TGTGAATCATTAAAATAAGC+AGG + chr7_1:17147108-17147127 None:intergenic 25.0%
!!! CTATTACAAGAGTTTTTCAA+AGG - chr7_1:17147717-17147736 Msa1012080:intron 25.0%
! TGAATCTTTAGTTGAAATTG+TGG - chr7_1:17147977-17147996 Msa1012080:intron 25.0%
!!! AATTTCATTTTTATTGCCAC+TGG + chr7_1:17148153-17148172 None:intergenic 25.0%
! ATGAAAATGGAAGATTATCA+AGG - chr7_1:17148183-17148202 Msa1012080:intron 25.0%
! TGAAAATGGAAGATTATCAA+GGG - chr7_1:17148184-17148203 Msa1012080:intron 25.0%
! ACCTTACTGTGAAGTAATTT+TGG - chr7_1:17144774-17144793 Msa1012080:three_prime_UTR 30.0%
! CCTTACTGTGAAGTAATTTT+GGG - chr7_1:17144775-17144794 Msa1012080:three_prime_UTR 30.0%
! CTTACTGTGAAGTAATTTTG+GGG - chr7_1:17144776-17144795 Msa1012080:three_prime_UTR 30.0%
!! TAAAGCATTGCAAATCAACA+AGG - chr7_1:17144828-17144847 Msa1012080:three_prime_UTR 30.0%
!! AAAGCATTGCAAATCAACAA+GGG - chr7_1:17144829-17144848 Msa1012080:three_prime_UTR 30.0%
!!! ACTATTTTTTAGGGTTTAGG+TGG - chr7_1:17145040-17145059 Msa1012080:CDS 30.0%
AACAAGTAGTAGAATAGCTT+CGG + chr7_1:17145577-17145596 None:intergenic 30.0%
AAAAGATTATCGTATCCACA+TGG + chr7_1:17145649-17145668 None:intergenic 30.0%
!! GAGTACAAGAAGTATTTGTT+GGG + chr7_1:17145718-17145737 None:intergenic 30.0%
!! TGAGTACAAGAAGTATTTGT+TGG + chr7_1:17145719-17145738 None:intergenic 30.0%
AAATACTTCTTGTACTCACT+CGG - chr7_1:17145721-17145740 Msa1012080:CDS 30.0%
AATACTAGTCACATTGAAGA+AGG - chr7_1:17145875-17145894 Msa1012080:CDS 30.0%
!! TACCAAATACAGTGTTGATT+GGG + chr7_1:17146360-17146379 None:intergenic 30.0%
!! TTACCAAATACAGTGTTGAT+TGG + chr7_1:17146361-17146380 None:intergenic 30.0%
AAAGTAAACAAGCCCTAAAA+TGG + chr7_1:17146565-17146584 None:intergenic 30.0%
CTCATAGTTAATAATTGTGC+TGG - chr7_1:17146636-17146655 Msa1012080:intron 30.0%
! GTCATTCTCTTCTACAATTT+TGG + chr7_1:17146761-17146780 None:intergenic 30.0%
CTTTGCATCTGCAAAAATTA+AGG + chr7_1:17146857-17146876 None:intergenic 30.0%
! TAATTTTTGCAGATGCAAAG+AGG - chr7_1:17146857-17146876 Msa1012080:intron 30.0%
TTGTAGTTCACAAGAATTGT+CGG + chr7_1:17146970-17146989 None:intergenic 30.0%
ACAATTCTTGTGAACTACAA+GGG - chr7_1:17146970-17146989 Msa1012080:intron 30.0%
! ATTTTTATCTTTGACCTTGG+CGG - chr7_1:17147255-17147274 Msa1012080:CDS 30.0%
AAATAAGGTCTTTGATGTCA+AGG - chr7_1:17147311-17147330 Msa1012080:CDS 30.0%
! TGAAGACTTTGATAACAGAA+TGG - chr7_1:17147362-17147381 Msa1012080:five_prime_UTR 30.0%
AAGAACAAAGAGGATATTAG+TGG - chr7_1:17147414-17147433 Msa1012080:five_prime_UTR 30.0%
AGAACAAAGAGGATATTAGT+GGG - chr7_1:17147415-17147434 Msa1012080:five_prime_UTR 30.0%
TACCTTGATATATAGCATCT+AGG + chr7_1:17147524-17147543 None:intergenic 30.0%
! ACTTTTGTTCATCAATCACT+CGG - chr7_1:17147547-17147566 Msa1012080:intron 30.0%
CATATTCAATTGCTCAAACT+TGG + chr7_1:17147574-17147593 None:intergenic 30.0%
! TGTACATACACTTTTCAAAG+AGG + chr7_1:17147599-17147618 None:intergenic 30.0%
AAAAGGAGATATTATGAGTG+TGG - chr7_1:17147884-17147903 Msa1012080:intron 30.0%
TAAACTTGTGTCTTCTTGAA+TGG + chr7_1:17147933-17147952 None:intergenic 30.0%
ACAAGTTTATTATACCCCTA+AGG - chr7_1:17147944-17147963 Msa1012080:intron 30.0%
ATTCAATACCTTCAACCTTA+GGG + chr7_1:17147962-17147981 None:intergenic 30.0%
AGTTGAAATTGTGGTTTATG+AGG - chr7_1:17147986-17148005 Msa1012080:intron 30.0%
GTTGAAATTGTGGTTTATGA+GGG - chr7_1:17147987-17148006 Msa1012080:intron 30.0%
ATCAACAAAGGTTAATCTGA+TGG - chr7_1:17148497-17148516 Msa1012080:intron 30.0%
TCAACAAAGGTTAATCTGAT+GGG - chr7_1:17148498-17148517 Msa1012080:intron 30.0%
AAACTCCAACATTATACACA+AGG + chr7_1:17148570-17148589 None:intergenic 30.0%
!! TTACGATATTAGTTCTGTCA+TGG + chr7_1:17148702-17148721 None:intergenic 30.0%
CCCAAAATTACTTCACAGTA+AGG + chr7_1:17144778-17144797 None:intergenic 35.0%
TCGGTGAAATTGAATTCAAG+AGG - chr7_1:17144799-17144818 Msa1012080:three_prime_UTR 35.0%
TCTAGTCTCAATTGTCCTAT+AGG + chr7_1:17145237-17145256 None:intergenic 35.0%
GTAAATCAACAAAGAGAGAG+AGG + chr7_1:17145508-17145527 None:intergenic 35.0%
! TACTAACATCGGTTGTTTGA+AGG + chr7_1:17145826-17145845 None:intergenic 35.0%
TTCATTCACTTGAAGCACAA+TGG - chr7_1:17146138-17146157 Msa1012080:CDS 35.0%
AAATATGAAGGAGTTGCGAT+CGG - chr7_1:17146166-17146185 Msa1012080:CDS 35.0%
TTTGTGAAAGCAACACAAGA+AGG + chr7_1:17146289-17146308 None:intergenic 35.0%
TTGCTTTCACAAATTCCCAA+AGG - chr7_1:17146296-17146315 Msa1012080:CDS 35.0%
! GTTAGAAGAAGCCTGATTTT+TGG + chr7_1:17146338-17146357 None:intergenic 35.0%
AACCCAATCAACACTGTATT+TGG - chr7_1:17146355-17146374 Msa1012080:CDS 35.0%
TGTGCTGGATAAAAGATAGA+CGG - chr7_1:17146651-17146670 Msa1012080:intron 35.0%
ATGCAAAGAGGTTAATTGGA+AGG - chr7_1:17146869-17146888 Msa1012080:intron 35.0%
CAGTAGATCATTCTGAACAA+TGG + chr7_1:17146908-17146927 None:intergenic 35.0%
TTCAGAATGATCTACTGTTG+TGG - chr7_1:17146911-17146930 Msa1012080:intron 35.0%
GACAATTCTTGTGAACTACA+AGG - chr7_1:17146969-17146988 Msa1012080:intron 35.0%
GTAATCACTGCATTCTTAAC+AGG + chr7_1:17147081-17147100 None:intergenic 35.0%
AATATCACCTGCATCTTTAG+TGG + chr7_1:17147139-17147158 None:intergenic 35.0%
!! CACAATTAGCTCTCTTTTGA+AGG + chr7_1:17147221-17147240 None:intergenic 35.0%
AATGGTGAATCACTTTGTGA+AGG - chr7_1:17147380-17147399 Msa1012080:five_prime_UTR 35.0%
TATAGCATCTAGGTCAATTG+TGG + chr7_1:17147514-17147533 None:intergenic 35.0%
GACCTAGATGCTATATATCA+AGG - chr7_1:17147519-17147538 Msa1012080:intron 35.0%
! CTTTTGTTCATCAATCACTC+GGG - chr7_1:17147548-17147567 Msa1012080:intron 35.0%
! CTGTCTTGTTGATGCTAAAA+TGG - chr7_1:17147629-17147648 Msa1012080:intron 35.0%
!! ACAAGAGTTTTTCAAAGGGA+AGG - chr7_1:17147722-17147741 Msa1012080:intron 35.0%
CACTAAGAATGTTCCAAACT+TGG - chr7_1:17147821-17147840 Msa1012080:intron 35.0%
!! TCACTTGCTATCGATACAAA+AGG - chr7_1:17147867-17147886 Msa1012080:intron 35.0%
!! AATGGTACAGAAGTATTCCT+AGG + chr7_1:17147915-17147934 None:intergenic 35.0%
TATTATACCCCTAAGGTTGA+AGG - chr7_1:17147951-17147970 Msa1012080:intron 35.0%
TTCAATACCTTCAACCTTAG+GGG + chr7_1:17147961-17147980 None:intergenic 35.0%
GATTCAATACCTTCAACCTT+AGG + chr7_1:17147963-17147982 None:intergenic 35.0%
ATAGCAAAGCATACTGTGAA+AGG + chr7_1:17148089-17148108 None:intergenic 35.0%
! TGCTTTGCTATAGATGCTAA+TGG - chr7_1:17148098-17148117 Msa1012080:intron 35.0%
AGTTGAAGCAAGAAATGCTT+TGG - chr7_1:17148274-17148293 Msa1012080:intron 35.0%
TTGATCTTCTCTTTGTCTAC+AGG + chr7_1:17148362-17148381 None:intergenic 35.0%
ACCAAGGGAAAAAGTTTGAT+TGG - chr7_1:17148392-17148411 Msa1012080:intron 35.0%
!! ACCAATCAAACTTTTTCCCT+TGG + chr7_1:17148396-17148415 None:intergenic 35.0%
AGAAGATACCTTTGTGTTTG+TGG - chr7_1:17148427-17148446 Msa1012080:intron 35.0%
CAAAAAGTCCACAAACACAA+AGG + chr7_1:17148438-17148457 None:intergenic 35.0%
! TGTGTTTGTGGACTTTTTGA+AGG - chr7_1:17148439-17148458 Msa1012080:intron 35.0%
GCTATGAAGAAGATCAACAA+AGG - chr7_1:17148485-17148504 Msa1012080:intron 35.0%
CAACAAAGGTTAATCTGATG+GGG - chr7_1:17148499-17148518 Msa1012080:intron 35.0%
TGCTTCCTTGTGTATAATGT+TGG - chr7_1:17148562-17148581 Msa1012080:five_prime_UTR 35.0%
!!! CTGTGAAGTAATTTTGGGGT+CGG - chr7_1:17144780-17144799 Msa1012080:three_prime_UTR 40.0%
AACAAAGAGAGAGAGGTCTA+GGG + chr7_1:17145501-17145520 None:intergenic 40.0%
GTAAAAAGTAACGACGAGGT+AGG + chr7_1:17145547-17145566 None:intergenic 40.0%
CCAAGTAAAAAGTAACGACG+AGG + chr7_1:17145551-17145570 None:intergenic 40.0%
!!! CCTCGTCGTTACTTTTTACT+TGG - chr7_1:17145548-17145567 Msa1012080:CDS 40.0%
CTTCAATGTGATAGCTAGTG+TGG + chr7_1:17145923-17145942 None:intergenic 40.0%
ACTAGCTATCACATTGAAGC+AGG - chr7_1:17145924-17145943 Msa1012080:CDS 40.0%
CATTGAAGCAGGAAAAGTCA+TGG - chr7_1:17145935-17145954 Msa1012080:CDS 40.0%
CTTACTCTTGTGTTGGAGTA+TGG - chr7_1:17146206-17146225 Msa1012080:CDS 40.0%
ACAAATTCCCAAAGGCTGAT+TGG - chr7_1:17146304-17146323 Msa1012080:CDS 40.0%
GCAGATGCAAAGAGGTTAAT+TGG - chr7_1:17146865-17146884 Msa1012080:intron 40.0%
!!! AGAGATTGCAGAGGCATTTT+TGG - chr7_1:17147050-17147069 Msa1012080:intron 40.0%
AAAGATGCAGGTGATATTGC+TGG - chr7_1:17147141-17147160 Msa1012080:CDS 40.0%
! TTGCTGGTCTCAATGTAATG+CGG - chr7_1:17147157-17147176 Msa1012080:CDS 40.0%
GATAATCAATGAACCGACTG+CGG - chr7_1:17147179-17147198 Msa1012080:CDS 40.0%
TATCAAAGTCTTCACCACCT+AGG + chr7_1:17147356-17147375 None:intergenic 40.0%
ACTTTGTGAAGGAGTTCAAG+AGG - chr7_1:17147391-17147410 Msa1012080:five_prime_UTR 40.0%
GTTCAAGAGGAAGAACAAAG+AGG - chr7_1:17147404-17147423 Msa1012080:five_prime_UTR 40.0%
!! CTTCTAGGATTCCTAAAGTG+AGG - chr7_1:17147691-17147710 Msa1012080:intron 40.0%
TGTAATAGCTGCCTCACTTT+AGG + chr7_1:17147705-17147724 None:intergenic 40.0%
ATGTTCCAAACTTGGTACTG+CGG - chr7_1:17147829-17147848 Msa1012080:intron 40.0%
! GTATCGATAGCAAGTGACAA+AGG + chr7_1:17147864-17147883 None:intergenic 40.0%
TTATGAGTGTGGTGATTCCT+AGG - chr7_1:17147895-17147914 Msa1012080:intron 40.0%
CAAAGCATACTGTGAAAGGA+AGG + chr7_1:17148085-17148104 None:intergenic 40.0%
TCTATTAAACGTCTCTGCAG+TGG - chr7_1:17148121-17148140 Msa1012080:intron 40.0%
AGAGATTGAGAGAATGATCC+AGG - chr7_1:17148208-17148227 Msa1012080:intron 40.0%
ATCAACTCAGCAATGACCAA+GGG - chr7_1:17148377-17148396 Msa1012080:intron 40.0%
!! ACACAAAGGTATCTTCTTGC+TGG + chr7_1:17148424-17148443 None:intergenic 40.0%
ATCTGATGGGGAAAGTGATT+TGG - chr7_1:17148511-17148530 Msa1012080:intron 40.0%
TCTTTGAGTGAGTAGACTTG+AGG - chr7_1:17148653-17148672 Msa1012080:five_prime_UTR 40.0%
ACACACTACACACACTAGAG+AGG - chr7_1:17144870-17144889 Msa1012080:three_prime_UTR 45.0%
ACACACTAGAGAGGAGAGAA+GGG - chr7_1:17144879-17144898 Msa1012080:three_prime_UTR 45.0%
TCAGAGAGAAGAGAAGAGCA+TGG - chr7_1:17144911-17144930 Msa1012080:three_prime_UTR 45.0%
ATCGTACTGCAGTTAACTGG+TGG - chr7_1:17145210-17145229 Msa1012080:CDS 45.0%
! CAGTTAACTGGTGGACCTAT+AGG - chr7_1:17145219-17145238 Msa1012080:CDS 45.0%
CAACAAAGAGAGAGAGGTCT+AGG + chr7_1:17145502-17145521 None:intergenic 45.0%
AGCATCACCAATCAGCCTTT+GGG + chr7_1:17146314-17146333 None:intergenic 45.0%
! TGGTGATGCTGCCAAAAATC+AGG - chr7_1:17146324-17146343 Msa1012080:CDS 45.0%
TCTACTGTTGTGGCCCTTTA+AGG - chr7_1:17146921-17146940 Msa1012080:intron 45.0%
!! TGGCCCTTTAAGGTCATTTC+CGG - chr7_1:17146931-17146950 Msa1012080:intron 45.0%
GCACCGGAAATGACCTTAAA+GGG + chr7_1:17146937-17146956 None:intergenic 45.0%
! AGCACCGGAAATGACCTTAA+AGG + chr7_1:17146938-17146957 None:intergenic 45.0%
TCTTGTGAACTACAAGGGTG+AGG - chr7_1:17146975-17146994 Msa1012080:intron 45.0%
TTTATCTTTGACCTTGGCGG+TGG - chr7_1:17147258-17147277 Msa1012080:CDS 45.0%
! TCAACCTCCTCAAGGCTTTT+GGG + chr7_1:17147443-17147462 None:intergenic 45.0%
GACACTTTCATACGACACTG+AGG - chr7_1:17147488-17147507 Msa1012080:intron 45.0%
GTCGATGATGTTGTCCTTGT+TGG - chr7_1:17147663-17147682 Msa1012080:intron 45.0%
GATGATGTTGTCCTTGTTGG+TGG - chr7_1:17147666-17147685 Msa1012080:intron 45.0%
!! TCCTTGTTGGTGGTTCTTCT+AGG - chr7_1:17147676-17147695 Msa1012080:intron 45.0%
TCCTAGAAGAACCACCAACA+AGG + chr7_1:17147680-17147699 None:intergenic 45.0%
!! CAAGAGCATTAACCCTGATG+AGG - chr7_1:17147752-17147771 Msa1012080:intron 45.0%
CATAAGCAACAGCCTCATCA+GGG + chr7_1:17147767-17147786 None:intergenic 45.0%
CTTCACTAAGCAAAACAGCC+TGG + chr7_1:17147800-17147819 None:intergenic 45.0%
TGTTCCAAACTTGGTACTGC+GGG - chr7_1:17147830-17147849 Msa1012080:intron 45.0%
! GCAAGTGAGAACAACTTGCT+TGG - chr7_1:17148023-17148042 Msa1012080:intron 45.0%
ATACTGTGAAAGGAAGGCCA+CGG + chr7_1:17148079-17148098 None:intergenic 45.0%
CCTTGAAATTCTCAGCTTCC+TGG + chr7_1:17148229-17148248 None:intergenic 45.0%
CCAGGAAGCTGAGAATTTCA+AGG - chr7_1:17148226-17148245 Msa1012080:intron 45.0%
GATCAACTCAGCAATGACCA+AGG - chr7_1:17148376-17148395 Msa1012080:intron 45.0%
!! TATTCTTAAAATTAAAAATA+AGG - chr7_1:17147296-17147315 Msa1012080:CDS 5.0%
CACACACTAGAGAGGAGAGA+AGG - chr7_1:17144878-17144897 Msa1012080:three_prime_UTR 50.0%
CACACTAGAGAGGAGAGAAG+GGG - chr7_1:17144880-17144899 Msa1012080:three_prime_UTR 50.0%
GCGATCGTACTGCAGTTAAC+TGG - chr7_1:17145207-17145226 Msa1012080:CDS 50.0%
GTTGCGATCGGAATTGACCT+TGG - chr7_1:17146178-17146197 Msa1012080:CDS 50.0%
CACAAGAGTAAGTCGTGCCA+AGG + chr7_1:17146198-17146217 None:intergenic 50.0%
GGCACGACTTACTCTTGTGT+TGG - chr7_1:17146199-17146218 Msa1012080:CDS 50.0%
CTCTTGTGTTGGAGTATGGC+AGG - chr7_1:17146210-17146229 Msa1012080:CDS 50.0%
CAGCATCACCAATCAGCCTT+TGG + chr7_1:17146315-17146334 None:intergenic 50.0%
!! TGTCGGTTTGTCATCAGCAC+CGG + chr7_1:17146953-17146972 None:intergenic 50.0%
CAATCTCTCGCATCTGTGAG+AGG + chr7_1:17147038-17147057 None:intergenic 50.0%
ACAGATGCGAGAGATTGCAG+AGG - chr7_1:17147041-17147060 Msa1012080:intron 50.0%
CGAAGAGCCACTAAAGATGC+AGG - chr7_1:17147129-17147148 Msa1012080:CDS 50.0%
AATCAATGAACCGACTGCGG+CGG - chr7_1:17147182-17147201 Msa1012080:CDS 50.0%
CATCAAAAGTTCCACCGCCA+AGG + chr7_1:17147272-17147291 None:intergenic 50.0%
TTTGATGTCAAGGCCACTGC+TGG - chr7_1:17147321-17147340 Msa1012080:CDS 50.0%
! CTCAACCTCCTCAAGGCTTT+TGG + chr7_1:17147444-17147463 None:intergenic 50.0%
GTTGAGAACTGCCTGTGAGA+GGG - chr7_1:17147458-17147477 Msa1012080:intron 50.0%
! TGTCCTTTTTGCCCTCTCAC+AGG + chr7_1:17147472-17147491 None:intergenic 50.0%
CCATAAGCAACAGCCTCATC+AGG + chr7_1:17147768-17147787 None:intergenic 50.0%
! CCTGATGAGGCTGTTGCTTA+TGG - chr7_1:17147765-17147784 Msa1012080:intron 50.0%
ACATCCCGCAGTACCAAGTT+TGG + chr7_1:17147837-17147856 None:intergenic 50.0%
TACTGTGAAAGGAAGGCCAC+GGG + chr7_1:17148078-17148097 None:intergenic 50.0%
TCTGCAGTGGAAGAAACCAG+TGG - chr7_1:17148134-17148153 Msa1012080:intron 50.0%
TAGGTGAGTGTCTCCAGCAG+TGG + chr7_1:17147337-17147356 None:intergenic 55.0%
ACTGCTGGAGACACTCACCT+AGG - chr7_1:17147336-17147355 Msa1012080:exon 55.0%
GTGGGAACCCAAAAGCCTTG+AGG - chr7_1:17147433-17147452 Msa1012080:intron 55.0%
GGAACCCAAAAGCCTTGAGG+AGG - chr7_1:17147436-17147455 Msa1012080:intron 55.0%
GGCAGTTCTCAACCTCCTCA+AGG + chr7_1:17147451-17147470 None:intergenic 55.0%
GGTTGAGAACTGCCTGTGAG+AGG - chr7_1:17147457-17147476 Msa1012080:intron 55.0%
CTGCCTGTGAGAGGGCAAAA+AGG - chr7_1:17147466-17147485 Msa1012080:intron 55.0%
TGCTTATGGTGCAGCTGTCC+AGG - chr7_1:17147779-17147798 Msa1012080:intron 55.0%
AAAGTTCCTCTTGCTCCCCG+TGG - chr7_1:17148059-17148078 Msa1012080:intron 55.0%
ACTGTGAAAGGAAGGCCACG+GGG + chr7_1:17148077-17148096 None:intergenic 55.0%
! GAGAGAGAGGTCTAGGGTCG+CGG + chr7_1:17145495-17145514 None:intergenic 60.0%
GCAGGAGCAGAACGATCGTG+TGG - chr7_1:17146228-17146247 Msa1012080:CDS 60.0%
TATGCAAGAGCCGCCGCAGT+CGG + chr7_1:17147195-17147214 None:intergenic 60.0%
ACTGCGGCGGCTCTTGCATA+TGG - chr7_1:17147195-17147214 Msa1012080:CDS 60.0%
GCTGGAGACACTCACCTAGG+TGG - chr7_1:17147339-17147358 Msa1012080:exon 60.0%
GGAAGGCCACGGGGAGCAAG+AGG + chr7_1:17148068-17148087 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 17144752 17148745 17144752 ID=Msa1012080;Name=Msa1012080
chr7_1 mRNA 17144752 17148745 17144752 ID=Msa1012080-mRNA-1;Parent=Msa1012080;Name=Msa1012080-mRNA-1;_AED=0.31;_eAED=0.31;_QI=328|1|1|1|0.5|0.33|3|234|620
chr7_1 exon 17144752 17146628 17144752 ID=Msa1012080-mRNA-1:exon:4302;Parent=Msa1012080-mRNA-1
chr7_1 exon 17147121 17147449 17147121 ID=Msa1012080-mRNA-1:exon:4301;Parent=Msa1012080-mRNA-1
chr7_1 exon 17148527 17148745 17148527 ID=Msa1012080-mRNA-1:exon:4300;Parent=Msa1012080-mRNA-1
chr7_1 five_prime_UTR 17148527 17148745 17148527 ID=Msa1012080-mRNA-1:five_prime_utr;Parent=Msa1012080-mRNA-1
chr7_1 five_prime_UTR 17147341 17147449 17147341 ID=Msa1012080-mRNA-1:five_prime_utr;Parent=Msa1012080-mRNA-1
chr7_1 CDS 17147121 17147340 17147121 ID=Msa1012080-mRNA-1:cds;Parent=Msa1012080-mRNA-1
chr7_1 CDS 17144986 17146628 17144986 ID=Msa1012080-mRNA-1:cds;Parent=Msa1012080-mRNA-1
chr7_1 three_prime_UTR 17144752 17144985 17144752 ID=Msa1012080-mRNA-1:three_prime_utr;Parent=Msa1012080-mRNA-1
Gene Sequence

>Msa1012080

ATGGCAAAAAAATATGAAGGAGTTGCGATCGGAATTGACCTTGGCACGACTTACTCTTGTGTTGGAGTATGGCAGGAGCAGAACGATCGTGTGGAAATTATTCACAATGATCAAGGAAACAAAACAACACCTTCTTGTGTTGCTTTCACAAATTCCCAAAGGCTGATTGGTGATGCTGCCAAAAATCAGGCTTCTTCTAACCCAATCAACACTGTATTTGATGCAAAGAGGTTAATTGGAAGGAAATATAGTGATTCCATTGTTCAGAATGATCTACTGTTGTGGCCCTTTAAGGTCATTTCCGGTGCTGATGACAAACCGACAATTCTTGTGAACTACAAGGGTGAGGAAAAGCACTTTGTTGCTGAAGAAATATCATCTGTGATCCTCTCACAGATGCGAGAGATTGCAGAGGCATTTTTGGAGTCACCTGTTAAGAATGCAGTGATTACTGTACCTGCTTATTTTAATGATTCACAACGAAGAGCCACTAAAGATGCAGGTGATATTGCTGGTCTCAATGTAATGCGGATAATCAATGAACCGACTGCGGCGGCTCTTGCATATGGCCTTCAAAAGAGAGCTAATTGTGTTGATAAGAGAAATATTTTTATCTTTGACCTTGGCGGTGGAACTTTTGATGTGTCTATTCTTAAAATTAAAAATAAGGTCTTTGATGTCAAGGCCACTGCTGGAGACACTCACCTAGGTGGTGAAGACTTTGATAACAGAATGGTGAATCACTTTGTGAAGGAGTTCAAGAGGAAGAACAAAGAGGATATTAGTGGGAACCCAAAAGCCTTGAGGAGGTTGAGAACTGCCTGTGAGAGGGCAAAAAGGACACTTTCATACGACACTGAGGCCACAATTGACCTAGATGCTATATATCAAGGTATTGACTTTTGTTCATCAATCACTCGGGCCAAGTTTGAGCAATTGAATATGAACCTCTTTGAAAAGTGTATGTACACTGTTAATAGCTGTCTTGTTGATGCTAAAATGGACAAGAATAGTGTCGATGATGTTGTCCTTGTTGGTGGTTCTTCTAGGATTCCTAAAGTGAGGCAGCTATTACAAGAGTTTTTCAAAGGGAAGGAATTATGCAAGAGCATTAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTCCAGGCTGTTTTGCTTAGTGAAGACACTAAGAATGTTCCAAACTTGGTACTGCGGGATGTTACTCCTTTGTCACTTGCTATCGATACAAAAGGAGATATTATGAGTGTGGTGATTCCTAGGAATACTTCTGTACCATTCAAGAAGACACAAGTTTATTATACCCCTAAGGTTGAAGGTATTGAATCTTTAGTTGAAATTGTGGTTTATGAGGGTGAGAGAATTGTTGCAAGTGAGAACAACTTGCTTGGTTTGTTTGATCTCAAAGTTCCTCTTGCTCCCCGTGGCCTTCCTTTCACAGTATGCTTTGCTATAGATGCTAATGGTCTATTAAACGTCTCTGCAGTGGAAGAAACCAGTGGCAATAAAAATGAAATTACAATAACTAATGAAAATGGAAGATTATCAAGGGAAGAGATTGAGAGAATGATCCAGGAAGCTGAGAATTTCAAGGCTCAAGACATGAAGTTCAAAAAGAAAGTTGAAGCAAGAAATGCTTTGGATGATTATCTGTACAAAGTAAGAAAAGTAATGAAGAATGATAGTACTAGCTCAAAGCTCACTCCTGTAGACAAAGAGAAGATCAACTCAGCAATGACCAAGGGAAAAAGTTTGATTGGTGATAGCCAGCAAGAAGATACCTTTGTGTTTGTGGACTTTTTGAAGGAGCTTGAGAGCATCTTTGAATCTGCTATGAAGAAGATCAACAAAGGTTAA
Protein sequence

>Msa1012080

MAKKYEGVAIGIDLGTTYSCVGVWQEQNDRVEIIHNDQGNKTTPSCVAFTNSQRLIGDAAKNQASSNPINTVFDAKRLIGRKYSDSIVQNDLLLWPFKVISGADDKPTILVNYKGEEKHFVAEEISSVILSQMREIAEAFLESPVKNAVITVPAYFNDSQRRATKDAGDIAGLNVMRIINEPTAAALAYGLQKRANCVDKRNIFIFDLGGGTFDVSILKIKNKVFDVKATAGDTHLGGEDFDNRMVNHFVKEFKRKNKEDISGNPKALRRLRTACERAKRTLSYDTEATIDLDAIYQGIDFCSSITRAKFEQLNMNLFEKCMYTVNSCLVDAKMDKNSVDDVVLVGGSSRIPKVRQLLQEFFKGKELCKSINPDEAVAYGAAVQAVLLSEDTKNVPNLVLRDVTPLSLAIDTKGDIMSVVIPRNTSVPFKKTQVYYTPKVEGIESLVEIVVYEGERIVASENNLLGLFDLKVPLAPRGLPFTVCFAIDANGLLNVSAVEETSGNKNEITITNENGRLSREEIERMIQEAENFKAQDMKFKKKVEARNALDDYLYKVRKVMKNDSTSSKLTPVDKEKINSAMTKGKSLIGDSQQEDTFVFVDFLKELESIFESAMKKINKG*