AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1053570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1053570 MtrunA17_Chr7g0223711 89.109 303 33 0 1 303 1 303 0.0 573
Msa1053570 MtrunA17_Chr8g0350731 88.779 303 34 0 1 303 29 331 0.0 564
Msa1053570 MtrunA17_Chr7g0223701 87.459 303 38 0 1 303 1 303 0.0 559
Msa1053570 MtrunA17_Chr7g0223621 85.479 303 44 0 1 303 1 303 0.0 551
Msa1053570 MtrunA17_Chr7g0223631 87.129 303 25 2 1 303 1 289 0.0 535
Msa1053570 MtrunA17_Chr7g0223751 81.848 303 55 0 1 303 1 303 0.0 528
Msa1053570 MtrunA17_Chr7g0223741 79.868 303 61 0 1 303 1 303 0.0 523
Msa1053570 MtrunA17_Chr7g0223031 80.066 301 60 0 1 301 1 301 0.0 518
Msa1053570 MtrunA17_Chr7g0223731 78.738 301 64 0 1 301 1 301 1.86e-178 506
Msa1053570 MtrunA17_Chr7g0248131 79.672 305 60 2 1 303 1 305 1.43e-175 499
Msa1053570 MtrunA17_Chr7g0223781 76.568 303 71 0 1 303 1 303 4.09e-174 495
Msa1053570 MtrunA17_Chr2g0293561 73.927 303 79 0 1 303 1 303 1.12e-173 486
Msa1053570 MtrunA17_Chr2g0293601 75.083 301 75 0 1 301 1 301 2.34e-173 488
Msa1053570 MtrunA17_Chr7g0223851 75.908 303 73 0 1 303 10 312 3.45e-172 491
Msa1053570 MtrunA17_Chr2g0293581 75.658 304 73 1 1 303 1 304 1.01e-171 489
Msa1053570 MtrunA17_Chr2g0298851 74.587 303 77 0 1 303 1 303 2.15e-171 488
Msa1053570 MtrunA17_Chr7g0248151 79.868 303 61 0 1 303 1 303 1.62e-170 486
Msa1053570 MtrunA17_Chr7g0223801 74.917 303 75 1 1 303 1 302 1.35e-169 484
Msa1053570 MtrunA17_Chr7g0221661 73.927 303 79 0 1 303 1 303 4.43e-169 483
Msa1053570 MtrunA17_Chr5g0427901 72.611 314 75 1 1 303 1 314 9.31e-169 482
Msa1053570 MtrunA17_Chr7g0225671 75.083 301 73 1 3 303 12 310 2.95e-168 481
Msa1053570 MtrunA17_Chr7g0262821 75.908 303 71 1 1 303 1 301 3.63e-168 481
Msa1053570 MtrunA17_Chr7g0228281 73.597 303 80 0 1 303 62 364 6.75e-168 480
Msa1053570 MtrunA17_Chr2g0296391 73.597 303 80 0 1 303 1 303 1.31e-166 473
Msa1053570 MtrunA17_Chr7g0223181 75.415 301 72 1 1 301 1 299 1.77e-166 477
Msa1053570 MtrunA17_Chr7g0223821 74.257 303 78 0 1 303 1 303 2.17e-165 476
Msa1053570 MtrunA17_Chr4g0031321 74.419 301 75 1 1 301 1 299 3.42e-164 471
Msa1053570 MtrunA17_Chr7g0223291 74.419 301 75 1 1 301 1 299 9.51e-164 470
Msa1053570 MtrunA17_Chr7g0233311 71.947 303 85 0 1 303 1 303 1.02e-163 469
Msa1053570 MtrunA17_Chr4g0031301 73.754 301 77 1 1 301 1 299 1.36e-163 469
Msa1053570 MtrunA17_Chr4g0073741 74.751 301 73 2 1 301 1 298 1.94e-163 469
Msa1053570 MtrunA17_Chr7g0223721 71.947 303 85 0 1 303 1 303 3.73e-163 468
Msa1053570 MtrunA17_Chr7g0233301 71.947 303 85 0 1 303 1 303 5.77e-162 463
Msa1053570 MtrunA17_Chr4g0040931 71.287 303 87 0 1 303 1 303 2.75e-161 462
Msa1053570 MtrunA17_Chr2g0298861 69.745 314 84 1 1 303 1 314 6.61e-161 462
Msa1053570 MtrunA17_Chr2g0287631 73.597 303 80 0 1 303 1 303 6.41e-159 457
Msa1053570 MtrunA17_Chr1g0151991 72.165 291 81 0 1 291 1 291 8.91e-157 439
Msa1053570 MtrunA17_Chr7g0245521 73.993 273 71 0 1 273 1 273 2.36e-155 435
Msa1053570 MtrunA17_Chr7g0215261 69.307 303 75 1 1 303 1 285 5.75e-154 443
Msa1053570 MtrunA17_Chr6g0462601 70.627 303 87 1 1 303 1 301 1.04e-151 439
Msa1053570 MtrunA17_Chr6g0462681 69.967 303 89 1 1 303 1 301 6.04e-148 431
Msa1053570 MtrunA17_Chr7g0223831 67.657 303 70 1 1 303 1 275 3.70e-147 426
Msa1053570 MtrunA17_Chr7g0217971 66.997 303 76 1 1 303 1 279 6.97e-147 425
Msa1053570 MtrunA17_Chr4g0012541 67.987 303 88 1 1 303 1 294 1.01e-146 426
Msa1053570 MtrunA17_Chr6g0462771 69.932 296 87 1 8 303 8 301 9.00e-145 422
Msa1053570 MtrunA17_Chr2g0299921 71.667 300 81 2 2 301 1022 1317 5.24e-143 442
Msa1053570 MtrunA17_Chr2g0299921 68.771 301 89 3 2 301 1406 1702 4.17e-135 420
Msa1053570 MtrunA17_Chr6g0462711 68.919 296 91 1 8 303 9 303 2.73e-142 416
Msa1053570 MtrunA17_Chr6g0462641 66.997 303 98 1 1 303 1 301 4.03e-139 408
Msa1053570 MtrunA17_Chr2g0299821 63.607 305 107 2 1 303 1 303 5.81e-139 401
Msa1053570 MtrunA17_Chr2g0331381 65.424 295 76 2 9 303 6 274 6.01e-139 401
Msa1053570 MtrunA17_Chr2g0299791 67.657 303 94 2 1 303 1034 1332 1.48e-137 422
Msa1053570 MtrunA17_Chr2g0299851 66.007 303 99 2 1 303 1030 1328 3.32e-136 418
Msa1053570 MtrunA17_Chr7g0223541 80.870 230 44 0 74 303 31 260 5.68e-136 397
Msa1053570 MtrunA17_Chr8g0390821 58.475 354 79 7 1 301 1 339 7.27e-133 391
Msa1053570 MtrunA17_Chr2g0284681 63.729 295 103 2 9 301 8 300 4.22e-131 385
Msa1053570 MtrunA17_Chr7g0223681 88.263 213 25 0 91 303 2 214 2.64e-130 381
Msa1053570 MtrunA17_Chr2g0299881 65.789 304 96 4 2 301 1031 1330 2.37e-129 401
Msa1053570 MtrunA17_Chr2g0299881 59.701 67 27 0 184 250 1409 1475 3.31e-19 88.2
Msa1053570 MtrunA17_Chr2g0293271 64.664 283 74 1 21 303 43 299 3.04e-129 374
Msa1053570 MtrunA17_Chr7g0223671 85.405 185 27 0 74 258 8 192 1.93e-117 336
Msa1053570 MtrunA17_Chr8g0388761 57.912 297 118 4 7 302 36 326 1.46e-114 345
Msa1053570 MtrunA17_Chr8g0388671 58.249 297 117 4 7 302 36 326 5.23e-114 343
Msa1053570 MtrunA17_Chr1g0188601 75.393 191 47 0 92 282 1 191 1.59e-106 308
Msa1053570 MtrunA17_Chr6g0462611 67.391 230 75 0 74 303 22 251 5.26e-105 319
Msa1053570 MtrunA17_Chr1g0166551 54.576 295 62 2 9 303 5 227 1.23e-102 309
Msa1053570 MtrunA17_Chr6g0462861 52.560 293 126 4 6 298 6 285 1.33e-95 295
Msa1053570 MtrunA17_Chr2g0279901 51.916 287 125 5 10 295 57 331 1.91e-87 275
Msa1053570 MtrunA17_Chr4g0049501 49.826 287 132 4 10 295 54 329 2.08e-87 275
Msa1053570 MtrunA17_Chr7g0223771 73.856 153 40 0 93 245 1 153 6.22e-81 242
Msa1053570 MtrunA17_Chr6g0462791 67.416 178 57 1 109 286 2 178 1.13e-80 242
Msa1053570 MtrunA17_Chr2g0277021 48.630 292 139 5 10 300 72 353 1.20e-75 244
Msa1053570 MtrunA17_Chr4g0046881 75.172 145 33 1 131 275 10 151 7.03e-74 223
Msa1053570 MtrunA17_Chr6g0462631 52.778 216 72 3 91 303 13 201 1.04e-66 210
Msa1053570 MtrunA17_Chr7g0223861 74.046 131 34 0 78 208 4 134 2.44e-65 201
Msa1053570 MtrunA17_Chr6g0462701 55.556 180 56 1 91 270 13 168 7.23e-59 186
Msa1053570 MtrunA17_Chr4g0004331 37.282 287 177 2 10 295 4 288 3.37e-57 197
Msa1053570 MtrunA17_Chr2g0331901 36.237 287 180 2 10 295 4 288 9.07e-57 196
Msa1053570 MtrunA17_Chr5g0444001 34.146 287 186 2 10 295 4 288 2.04e-50 174
Msa1053570 MtrunA17_Chr6g0462751 43.103 232 73 3 74 303 19 193 6.08e-50 167
Msa1053570 MtrunA17_Chr3g0098761 33.449 287 188 2 10 295 4 288 1.79e-49 175
Msa1053570 MtrunA17_Chr6g0481391 63.934 122 41 1 38 159 13 131 2.92e-48 157
Msa1053570 MtrunA17_Chr7g0223691 90.411 73 7 0 1 73 1 73 1.48e-44 146
Msa1053570 MtrunA17_Chr5g0394231 36.564 227 93 4 74 299 5 181 1.61e-43 147
Msa1053570 MtrunA17_Chr5g0394391 32.558 301 178 9 8 293 28 318 9.43e-36 135
Msa1053570 MtrunA17_Chr1g0188591 78.082 73 16 0 1 73 1 73 2.23e-34 120
Msa1053570 MtrunA17_Chr3g0120101 27.010 311 207 6 10 303 27 334 1.34e-32 127
Msa1053570 MtrunA17_Chr6g0481381 71.622 74 21 0 176 249 1 74 3.81e-32 117
Msa1053570 MtrunA17_Chr6g0462621 75.342 73 16 1 1 73 1 71 2.88e-31 112
Msa1053570 MtrunA17_Chr7g0223791 68.293 82 18 3 56 137 18 91 1.62e-27 105
Msa1053570 MtrunA17_Chr4g0064621 31.034 319 187 12 8 302 139 448 2.83e-25 105
Msa1053570 MtrunA17_Chr7g0221651 52.381 84 40 0 215 298 1 84 3.95e-24 93.6
Msa1053570 MtrunA17_Chr4g0060241 26.774 310 186 12 8 295 19 309 6.02e-18 84.0
Msa1053570 MtrunA17_Chr7g0223761 57.143 63 27 0 241 303 3 65 1.38e-17 82.0
Msa1053570 MtrunA17_Chr5g0442161 30.573 157 102 4 5 157 24 177 2.60e-13 67.0
Msa1053570 MtrunA17_Chr2g0284661 51.667 60 27 1 225 282 5 64 3.82e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1053570 AT3G12580.1 76.080 301 70 1 1 301 1 299 2.88e-167 479
Msa1053570 AT5G02500.2 74.257 303 76 1 1 303 1 301 4.58e-167 474
Msa1053570 AT5G02500.1 74.257 303 76 1 1 303 1 301 2.60e-165 474
Msa1053570 AT5G02490.1 74.587 303 75 1 1 303 1 301 5.81e-165 474
Msa1053570 AT1G56410.1 74.257 303 76 1 1 303 1 301 8.42e-165 472
Msa1053570 AT3G09440.1 75.083 301 73 1 1 301 1 299 9.85e-165 473
Msa1053570 AT3G09440.4 75.083 301 73 1 1 301 1 299 9.85e-165 473
Msa1053570 AT3G09440.2 75.083 301 73 1 1 301 1 299 9.85e-165 473
Msa1053570 AT3G09440.3 75.083 301 73 1 1 301 1 299 9.85e-165 473
Msa1053570 AT1G16030.1 71.761 301 82 2 1 301 1 298 1.81e-155 449
Msa1053570 AT1G09080.2 59.797 296 113 3 7 302 40 329 4.10e-120 359
Msa1053570 AT1G09080.1 59.797 296 113 3 7 302 50 339 6.30e-120 359
Msa1053570 AT5G28540.1 59.259 297 114 4 7 302 35 325 4.73e-117 352
Msa1053570 AT5G42020.2 58.923 297 115 4 7 302 35 325 1.06e-116 349
Msa1053570 AT5G42020.1 58.923 297 115 4 7 302 35 325 1.99e-116 350
Msa1053570 AT5G42020.3 58.923 297 115 4 7 302 40 330 3.94e-116 349
Msa1053570 AT4G37910.1 50.174 287 131 4 10 295 55 330 3.39e-86 272
Msa1053570 AT4G37910.2 50.174 287 131 4 10 295 55 330 3.39e-86 272
Msa1053570 AT5G09590.1 50.523 287 130 4 10 295 60 335 5.70e-85 269
Msa1053570 AT4G24280.1 47.945 292 141 5 10 300 81 362 6.28e-75 243
Msa1053570 AT5G49910.1 47.603 292 142 5 10 300 81 362 1.42e-74 242
Msa1053570 AT1G79930.2 37.979 287 175 2 10 295 4 288 3.48e-60 205
Msa1053570 AT1G79930.1 37.979 287 175 2 10 295 4 288 9.22e-60 204
Msa1053570 AT1G79920.3 37.716 289 173 3 10 295 4 288 8.14e-59 201
Msa1053570 AT1G79920.2 37.716 289 173 3 10 295 4 288 8.14e-59 201
Msa1053570 AT1G79920.4 37.716 289 173 3 10 295 4 288 8.14e-59 201
Msa1053570 AT1G79920.1 37.716 289 173 3 10 295 4 288 8.74e-59 200
Msa1053570 AT1G11660.4 37.075 294 179 3 10 300 4 294 6.52e-57 196
Msa1053570 AT1G11660.3 37.075 294 179 3 10 300 4 294 6.52e-57 196
Msa1053570 AT1G11660.1 37.075 294 179 3 10 300 4 294 6.52e-57 196
Msa1053570 AT1G11660.2 39.300 257 152 2 47 300 2 257 1.39e-50 178
Msa1053570 AT4G16660.2 27.532 316 206 8 6 303 47 357 4.32e-33 129
Msa1053570 AT4G16660.1 27.532 316 206 8 6 303 23 333 5.16e-33 129
Msa1053570 AT2G32120.1 31.081 296 178 9 8 293 29 308 9.68e-29 115
Msa1053570 AT2G32120.2 31.081 296 178 9 8 293 29 308 9.68e-29 115

Find 132 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAACCTCCTCAAGGCTTT+TGG 0.126998 7_2:+23909478 None:intergenic
TCTACTGTTGTGGCCCTTTA+AGG 0.152881 7_2:-23909998 Msa1053570:CDS
AACCCAATCAACACTGTATT+TGG 0.172484 7_2:-23910483 Msa1053570:intron
TTTAAATTGGCATCAAAATT+TGG 0.189282 7_2:+23910740 None:intergenic
TCCTTGTTGGTGGTTCTTCT+AGG 0.229614 7_2:-23909243 Msa1053570:three_prime_UTR
TGTAGTGTATAGTAGTATTT+TGG 0.234038 7_2:+23910777 None:intergenic
CCAATCTTCAGTCCTAATTA+AGG 0.240179 7_2:-23908948 Msa1053570:three_prime_UTR
TGGCCCTTTAAGGTCATTTC+CGG 0.243786 7_2:-23909988 Msa1053570:CDS
GCAGATGCAAAGAGGTTAAT+TGG 0.250254 7_2:-23910054 Msa1053570:intron
CTGTCTTGTTGATGCTAAAA+TGG 0.256497 7_2:-23909290 Msa1053570:three_prime_UTR
ATTACAATAACTAATGAAAA+TGG 0.292577 7_2:-23908755 Msa1053570:three_prime_UTR
ATCTGATGGGGAAAGTGATT+TGG 0.295466 7_2:-23908414 Msa1053570:three_prime_UTR
CACCACACTCATAATATTTC+CGG 0.297987 7_2:+23909033 None:intergenic
CCTTGAAATTGTGAGCTTCC+TGG 0.306398 7_2:+23908699 None:intergenic
AGAAGATACCTTTGTGTTTG+TGG 0.330848 7_2:-23908498 Msa1053570:three_prime_UTR
TTTGTAGAGAAGATTTAAAT+TGG 0.338244 7_2:+23910727 None:intergenic
CCTGATGAGGCTGTTGCTTA+TGG 0.340665 7_2:-23909154 Msa1053570:three_prime_UTR
CACCCTCATAAACCTTAATT+AGG 0.348815 7_2:+23908936 None:intergenic
CAAGTTTGAGCAATTGAATA+TGG 0.349032 7_2:-23909347 Msa1053570:three_prime_UTR
AGCACCGGAAATGACCTTAA+AGG 0.349583 7_2:+23909984 None:intergenic
CTTACTCGTGTGTTGGAGTA+TGG 0.355368 7_2:-23910632 Msa1053570:CDS
CAGCATCACCAATCAGCCTT+TGG 0.360159 7_2:+23910526 None:intergenic
GTCGATGATGTTGTCCTTGT+TGG 0.366819 7_2:-23909256 Msa1053570:three_prime_UTR
ACATCTCTCAGCACCATGTT+TGG 0.373927 7_2:+23909085 None:intergenic
TTGATCTTCTCTTTGTCTAC+AGG 0.380282 7_2:+23908566 None:intergenic
GTAATCACTACATTCTTAAC+AGG 0.380808 7_2:+23909841 None:intergenic
AGTTGAAGCAAGAAATGCTT+TGG 0.381737 7_2:-23908651 Msa1053570:three_prime_UTR
TTACCAAATACAGTGTTGAT+TGG 0.383287 7_2:+23910480 None:intergenic
TGCTTATGGTGCAGCTGTCC+AGG 0.386356 7_2:-23909140 Msa1053570:three_prime_UTR
CCATAAGCAACAGCCTCATC+AGG 0.392319 7_2:+23909154 None:intergenic
AGTCCTAATTAAGGTTTATG+AGG 0.401558 7_2:-23908939 Msa1053570:three_prime_UTR
AAGAACAAAGAGGATATTAG+TGG 0.402789 7_2:-23909505 Msa1053570:CDS
AATATCACCTGCATCTTTAG+TGG 0.406579 7_2:+23909783 None:intergenic
TACCAAATACAGTGTTGATT+GGG 0.407934 7_2:+23910481 None:intergenic
AGCATCACCAATCAGCCTTT+GGG 0.410141 7_2:+23910527 None:intergenic
ACTGCGGCGGCTCTTGCATA+TGG 0.414217 7_2:-23909724 Msa1053570:CDS
ACTAATTCCCAAAGGCTGAT+TGG 0.414254 7_2:-23910534 Msa1053570:CDS
CTGCCTGTGAAAGAGCAAAA+AGG 0.419527 7_2:-23909453 Msa1053570:CDS
TAACCTTGTGTCTTCTTGAA+TGG 0.421543 7_2:+23908989 None:intergenic
CATATTCAATTGCTCAAACT+TGG 0.426433 7_2:+23909348 None:intergenic
AAAGATGCAGGTGATATTGC+TGG 0.430331 7_2:-23909778 Msa1053570:CDS
AGCATCTATAGCAAAGTATA+CGG 0.430897 7_2:+23908832 None:intergenic
GCACCGGAAATGACCTTAAA+GGG 0.431309 7_2:+23909985 None:intergenic
TTTGAAGTCAAGGCCACTGC+TGG 0.434747 7_2:-23909598 Msa1053570:CDS
ACACAAAGGTATCTTCTTGC+TGG 0.438966 7_2:+23908504 None:intergenic
AGAGATTGAGAGAATGATCC+AGG 0.439899 7_2:-23908717 Msa1053570:three_prime_UTR
ATGAAAATGGAAGATTATCA+AGG 0.459072 7_2:-23908742 Msa1053570:three_prime_UTR
TTTATCTTTGACCTTGGCGG+TGG 0.462009 7_2:-23909661 Msa1053570:CDS
TGTAATAGCTGCCTCACCTT+AGG 0.468472 7_2:+23909217 None:intergenic
ATGTAGTTCACAAGAATTGT+CGG 0.473999 7_2:+23909952 None:intergenic
TACTTTGCTATAGATGCTAA+TGG 0.474104 7_2:-23908827 Msa1053570:three_prime_UTR
GATTTGCTTGTGTATAATGT+TGG 0.475612 7_2:-23908367 Msa1053570:three_prime_UTR
CTTGTGTATAATGTTGGAGT+TGG 0.475733 7_2:-23908361 Msa1053570:three_prime_UTR
TTATGAGTGTGGTGATTCCT+AGG 0.478815 7_2:-23909024 Msa1053570:three_prime_UTR
TGGTTCTTCTAGGATTCCTA+AGG 0.481895 7_2:-23909233 Msa1053570:three_prime_UTR
CCTTAATTAGGACTGAAGAT+TGG 0.484550 7_2:+23908948 None:intergenic
ATCAACAAAGGTTAATCTGA+TGG 0.486795 7_2:-23908428 Msa1053570:three_prime_UTR
GACCTAGATGCTATATATCA+AGG 0.488303 7_2:-23909400 Msa1053570:CDS
CCAGGAAGCTCACAATTTCA+AGG 0.488367 7_2:-23908699 Msa1053570:three_prime_UTR
GATGTTACCCCTTTGTCACT+TGG 0.489905 7_2:-23909067 Msa1053570:three_prime_UTR
GAAATTATTCACAATGATCA+AGG 0.492859 7_2:-23910588 Msa1053570:CDS
ATTCAATACCAAGTGACAAA+GGG 0.495188 7_2:+23909059 None:intergenic
TGTGAATCATTGAAATAAGC+AGG 0.496737 7_2:+23909814 None:intergenic
TCAACAAAGGTTAATCTGAT+GGG 0.507506 7_2:-23908427 Msa1053570:three_prime_UTR
CTCGTGTGTTGGAGTATGGC+AGG 0.508579 7_2:-23910628 Msa1053570:CDS
AATGGTACAGAAGTATTCCT+AGG 0.513462 7_2:+23909007 None:intergenic
GGCACGACTTACTCGTGTGT+TGG 0.523542 7_2:-23910639 Msa1053570:CDS
TCACTTGGTATTGAATTGAC+CGG 0.524664 7_2:-23909052 Msa1053570:three_prime_UTR
GTCCTAATTAAGGTTTATGA+GGG 0.533350 7_2:-23908938 Msa1053570:three_prime_UTR
GATGATGTTGTCCTTGTTGG+TGG 0.537032 7_2:-23909253 Msa1053570:three_prime_UTR
AAATCAGGTCTTTGAAGTCA+AGG 0.541133 7_2:-23909608 Msa1053570:CDS
TGTCGGTTTGTCATTAGCAC+CGG 0.546119 7_2:+23909969 None:intergenic
GACAATTCTTGTGAACTACA+TGG 0.554410 7_2:-23909950 Msa1053570:CDS
CAATCTCTCGCATCTGTGAG+AGG 0.564409 7_2:+23909884 None:intergenic
CGAAGAGCCACTAAAGATGC+AGG 0.564548 7_2:-23909790 Msa1053570:CDS
CACTAAGAATGTTCCAAACA+TGG 0.566528 7_2:-23909098 Msa1053570:three_prime_UTR
TACCTTGATATATAGCATCT+AGG 0.567285 7_2:+23909398 None:intergenic
TATGCAAGAGCCGCCGCAGT+CGG 0.567463 7_2:+23909727 None:intergenic
AAAGTTCCTCTTGCTTCCCG+TGG 0.569272 7_2:-23908866 Msa1053570:three_prime_UTR
AATTCAATACCAAGTGACAA+AGG 0.571009 7_2:+23909058 None:intergenic
ATGCAAAGAGGTTAATTGGA+AGG 0.571352 7_2:-23910050 Msa1053570:CDS
GTTGCGATCGGAATTGACCT+TGG 0.571381 7_2:-23910660 Msa1053570:CDS
GGCAGTTCTCAACCTCCTCA+AGG 0.573614 7_2:+23909471 None:intergenic
CAAAGTATACGGTGAGAGGA+AGG 0.575604 7_2:+23908843 None:intergenic
AAATATGAGGGAGTTGCGAT+CGG 0.580136 7_2:-23910672 Msa1053570:CDS
GGAAGGCCACGGGAAGCAAG+AGG 0.582055 7_2:+23908860 None:intergenic
TACGGTGAGAGGAAGGCCAC+GGG 0.583906 7_2:+23908850 None:intergenic
CTTCACTAAGCAAAACAGCC+TGG 0.589833 7_2:+23909122 None:intergenic
TGAAAATGGAAGATTATCAA+GGG 0.589866 7_2:-23908741 Msa1053570:three_prime_UTR
TCTTGTGAACTACATGGGTG+AGG 0.591771 7_2:-23909944 Msa1053570:CDS
TTGCTTTCACTAATTCCCAA+AGG 0.594534 7_2:-23910542 Msa1053570:CDS
TATAGCATCTAGGTCAATTG+TGG 0.597011 7_2:+23909408 None:intergenic
TAGGTGAGTGTCTCCAGCAG+TGG 0.598292 7_2:+23909585 None:intergenic
TTCATTCACTTGAAGCACAA+TGG 0.598922 7_2:-23910700 Msa1053570:exon
CTTCTAGGATTCCTAAGGTG+AGG 0.599274 7_2:-23909228 Msa1053570:three_prime_UTR
GATAATCAACGAACCGACTG+CGG 0.599523 7_2:-23909740 Msa1053570:CDS
TGTTTGAGTGAGTAGACTTG+AGG 0.607134 7_2:-23908275 Msa1053570:three_prime_UTR
TATCGAAGTCTTCACCGCCT+AGG 0.607358 7_2:+23909566 None:intergenic
TATATTAAACGTCTCTGCAG+TGG 0.608686 7_2:-23908804 Msa1053570:three_prime_UTR
ATACGGTGAGAGGAAGGCCA+CGG 0.613748 7_2:+23908849 None:intergenic
ATAGCAAAGTATACGGTGAG+AGG 0.614926 7_2:+23908839 None:intergenic
CATCAAAAGTTCCACCGCCA+AGG 0.617660 7_2:+23909650 None:intergenic
ACTTTGTGAAGGAGTTCAAG+AGG 0.618825 7_2:-23909528 Msa1053570:CDS
CAGTAGATCATTCTGAACAA+TGG 0.620189 7_2:+23910014 None:intergenic
CAACAAAGGTTAATCTGATG+GGG 0.621557 7_2:-23908426 Msa1053570:three_prime_UTR
TGAAGACTTCGATAACAGAA+TGG 0.624619 7_2:-23909557 Msa1053570:CDS
GATCAACTCAGCAATGACCA+AGG 0.625695 7_2:-23908549 Msa1053570:three_prime_UTR
TTAGTGAAAGCAACACAAGA+AGG 0.625764 7_2:+23910552 None:intergenic
ACAATTCTTGTGAACTACAT+GGG 0.629634 7_2:-23909949 Msa1053570:CDS
TTCAGAATGATCTACTGTTG+TGG 0.632222 7_2:-23910008 Msa1053570:CDS
AGAACAAAGAGGATATTAGT+GGG 0.633089 7_2:-23909504 Msa1053570:CDS
CATAAGCAACAGCCTCATCA+GGG 0.634330 7_2:+23909155 None:intergenic
CAAGAGCATTAACCCTGATG+AGG 0.639574 7_2:-23909167 Msa1053570:three_prime_UTR
ACTGCTGGAGACACTCACCT+AGG 0.643459 7_2:-23909583 Msa1053570:CDS
AATGGTGAATCACTTTGTGA+AGG 0.643840 7_2:-23909539 Msa1053570:CDS
TTCAATACCAAGTGACAAAG+GGG 0.643889 7_2:+23909060 None:intergenic
GTTCAAGAGGAAGAACAAAG+AGG 0.645922 7_2:-23909515 Msa1053570:CDS
TCCTAGAAGAACCACCAACA+AGG 0.646014 7_2:+23909242 None:intergenic
ATCAACTCAGCAATGACCAA+GGG 0.650698 7_2:-23908548 Msa1053570:three_prime_UTR
CACACGAGTAAGTCGTGCCA+AGG 0.653849 7_2:+23910643 None:intergenic
GCAGGAGCAGAACGATCGTG+TGG 0.659349 7_2:-23910610 Msa1053570:CDS
GCTATGAAGAAGATCAACAA+AGG 0.662134 7_2:-23908440 Msa1053570:three_prime_UTR
AATCAACGAACCGACTGCGG+CGG 0.664314 7_2:-23909737 Msa1053570:CDS
GTGGGAACCCAAAAGCCTTG+AGG 0.668086 7_2:-23909486 Msa1053570:CDS
GGAACCCAAAAGCCTTGAGG+AGG 0.669169 7_2:-23909483 Msa1053570:CDS
GTACCATTCAAGAAGACACA+AGG 0.677708 7_2:-23908992 Msa1053570:three_prime_UTR
GACCGGAAATATTATGAGTG+TGG 0.688964 7_2:-23909035 Msa1053570:three_prime_UTR
TTGCTGGTCTCAATGTAATG+CGG 0.689400 7_2:-23909762 Msa1053570:CDS
ACAGATGCGAGAGATTGCAG+AGG 0.728184 7_2:-23909878 Msa1053570:CDS
TCTGCAGTGGAAGAAACCAG+TGG 0.733951 7_2:-23908791 Msa1053570:three_prime_UTR
GCTGGAGACACTCACCTAGG+CGG 0.737514 7_2:-23909580 Msa1053570:CDS
GACACTTTCATATGACACTG+AGG 0.737805 7_2:-23909431 Msa1053570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACTTTCTAAAAACATTTT+TGG - chr7_2:23908690-23908709 Msa1053570:three_prime_UTR 15.0%
!! TATTCTTACAATAAAAAATC+AGG - chr7_2:23909399-23909418 Msa1053570:CDS 15.0%
!! ATTACAATAACTAATGAAAA+TGG - chr7_2:23910267-23910286 Msa1053570:intron 15.0%
!! TTTAAATTGGCATCAAAATT+TGG + chr7_2:23908285-23908304 None:intergenic 20.0%
!! TTTGTAGAGAAGATTTAAAT+TGG + chr7_2:23908298-23908317 None:intergenic 20.0%
!!! TTCATTTTAAATTGCTAACA+TGG - chr7_2:23908715-23908734 Msa1053570:three_prime_UTR 20.0%
!!! TCATTTTAAATTGCTAACAT+GGG - chr7_2:23908716-23908735 Msa1053570:three_prime_UTR 20.0%
!!! ATTTTTGGAAGTTTTGAAAA+TGG + chr7_2:23908836-23908855 None:intergenic 20.0%
!! GTTGATATGAAAATGAAAAT+AGG - chr7_2:23908921-23908940 Msa1053570:three_prime_UTR 20.0%
!!! TATTACAAGAGTTTTTCAAA+GGG - chr7_2:23909821-23909840 Msa1053570:CDS 20.0%
!!! TGTATAGTAGTATTTTGGAA+AGG + chr7_2:23908243-23908262 None:intergenic 25.0%
!! TGTAGTGTATAGTAGTATTT+TGG + chr7_2:23908248-23908267 None:intergenic 25.0%
! ACAATGGCAAAAAAATATGA+GGG - chr7_2:23908338-23908357 Msa1053570:three_prime_UTR 25.0%
! GAAATTATTCACAATGATCA+AGG - chr7_2:23908434-23908453 Msa1053570:three_prime_UTR 25.0%
! AACTAAAAATTAAACAGTGC+TGG + chr7_2:23908586-23908605 None:intergenic 25.0%
!! TATCATAGATCACCATTTTA+GGG - chr7_2:23908662-23908681 Msa1053570:three_prime_UTR 25.0%
! TGTGCTAGATAAAATATAGA+AGG - chr7_2:23908763-23908782 Msa1053570:three_prime_UTR 25.0%
!! TGCAACATATTTGACATTTT+TGG + chr7_2:23908851-23908870 None:intergenic 25.0%
! TTGCATCTGCAAAAAATTAA+GGG + chr7_2:23908958-23908977 None:intergenic 25.0%
! TTTGCATCTGCAAAAAATTA+AGG + chr7_2:23908959-23908978 None:intergenic 25.0%
!! AACATTTTTATCTTTGACCT+TGG - chr7_2:23909355-23909374 Msa1053570:three_prime_UTR 25.0%
!!! CTATTACAAGAGTTTTTCAA+AGG - chr7_2:23909820-23909839 Msa1053570:CDS 25.0%
!!! AATTTCATTTTTATTGCCAC+TGG + chr7_2:23910250-23910269 None:intergenic 25.0%
! ATGAAAATGGAAGATTATCA+AGG - chr7_2:23910280-23910299 Msa1053570:intron 25.0%
! TGAAAATGGAAGATTATCAA+GGG - chr7_2:23910281-23910300 Msa1053570:intron 25.0%
CACAATGGCAAAAAAATATG+AGG - chr7_2:23908337-23908356 Msa1053570:three_prime_UTR 30.0%
!! TACCAAATACAGTGTTGATT+GGG + chr7_2:23908544-23908563 None:intergenic 30.0%
!! TTACCAAATACAGTGTTGAT+TGG + chr7_2:23908545-23908564 None:intergenic 30.0%
! GTATCATAGATCACCATTTT+AGG - chr7_2:23908661-23908680 Msa1053570:three_prime_UTR 30.0%
!!! AATTTTTTGCAGATGCAAAG+AGG - chr7_2:23908960-23908979 Msa1053570:three_prime_UTR 30.0%
ATGTAGTTCACAAGAATTGT+CGG + chr7_2:23909073-23909092 None:intergenic 30.0%
ACAATTCTTGTGAACTACAT+GGG - chr7_2:23909073-23909092 Msa1053570:three_prime_UTR 30.0%
GTAATCACTACATTCTTAAC+AGG + chr7_2:23909184-23909203 None:intergenic 30.0%
TGTGAATCATTGAAATAAGC+AGG + chr7_2:23909211-23909230 None:intergenic 30.0%
! ATTTTTATCTTTGACCTTGG+CGG - chr7_2:23909358-23909377 Msa1053570:three_prime_UTR 30.0%
AAGAACAAAGAGGATATTAG+TGG - chr7_2:23909517-23909536 Msa1053570:CDS 30.0%
AGAACAAAGAGGATATTAGT+GGG - chr7_2:23909518-23909537 Msa1053570:CDS 30.0%
TACCTTGATATATAGCATCT+AGG + chr7_2:23909627-23909646 None:intergenic 30.0%
! ACTTTTGTTCATGAATCACT+CGG - chr7_2:23909650-23909669 Msa1053570:CDS 30.0%
CATATTCAATTGCTCAAACT+TGG + chr7_2:23909677-23909696 None:intergenic 30.0%
CAAGTTTGAGCAATTGAATA+TGG - chr7_2:23909675-23909694 Msa1053570:CDS 30.0%
! TGTACATACACTTTTCAAAG+AGG + chr7_2:23909702-23909721 None:intergenic 30.0%
ATTCAATACCAAGTGACAAA+GGG + chr7_2:23909966-23909985 None:intergenic 30.0%
AATTCAATACCAAGTGACAA+AGG + chr7_2:23909967-23909986 None:intergenic 30.0%
AGTCCTAATTAAGGTTTATG+AGG - chr7_2:23910083-23910102 Msa1053570:intron 30.0%
GTCCTAATTAAGGTTTATGA+GGG - chr7_2:23910084-23910103 Msa1053570:intron 30.0%
AGCATCTATAGCAAAGTATA+CGG + chr7_2:23910193-23910212 None:intergenic 30.0%
! TACTTTGCTATAGATGCTAA+TGG - chr7_2:23910195-23910214 Msa1053570:intron 30.0%
ATCAACAAAGGTTAATCTGA+TGG - chr7_2:23910594-23910613 Msa1053570:CDS 30.0%
TCAACAAAGGTTAATCTGAT+GGG - chr7_2:23910595-23910614 Msa1053570:CDS 30.0%
! GATTTGCTTGTGTATAATGT+TGG - chr7_2:23910655-23910674 Msa1053570:CDS 30.0%
TTCATTCACTTGAAGCACAA+TGG - chr7_2:23908322-23908341 Msa1053570:three_prime_UTR 35.0%
TTAGTGAAAGCAACACAAGA+AGG + chr7_2:23908473-23908492 None:intergenic 35.0%
TTGCTTTCACTAATTCCCAA+AGG - chr7_2:23908480-23908499 Msa1053570:three_prime_UTR 35.0%
! GTTAGAAGAAGCCTGATTTT+TGG + chr7_2:23908522-23908541 None:intergenic 35.0%
AACCCAATCAACACTGTATT+TGG - chr7_2:23908539-23908558 Msa1053570:three_prime_UTR 35.0%
AAAGTAAACACGCCCTAAAA+TGG + chr7_2:23908677-23908696 None:intergenic 35.0%
ATGCAAAGAGGTTAATTGGA+AGG - chr7_2:23908972-23908991 Msa1053570:three_prime_UTR 35.0%
CAGTAGATCATTCTGAACAA+TGG + chr7_2:23909011-23909030 None:intergenic 35.0%
TTCAGAATGATCTACTGTTG+TGG - chr7_2:23909014-23909033 Msa1053570:three_prime_UTR 35.0%
GACAATTCTTGTGAACTACA+TGG - chr7_2:23909072-23909091 Msa1053570:three_prime_UTR 35.0%
AATATCACCTGCATCTTTAG+TGG + chr7_2:23909242-23909261 None:intergenic 35.0%
!! AAATCAGGTCTTTGAAGTCA+AGG - chr7_2:23909414-23909433 Msa1053570:CDS 35.0%
TGAAGACTTCGATAACAGAA+TGG - chr7_2:23909465-23909484 Msa1053570:CDS 35.0%
AATGGTGAATCACTTTGTGA+AGG - chr7_2:23909483-23909502 Msa1053570:CDS 35.0%
TATAGCATCTAGGTCAATTG+TGG + chr7_2:23909617-23909636 None:intergenic 35.0%
GACCTAGATGCTATATATCA+AGG - chr7_2:23909622-23909641 Msa1053570:CDS 35.0%
! CTTTTGTTCATGAATCACTC+GGG - chr7_2:23909651-23909670 Msa1053570:CDS 35.0%
! CTGTCTTGTTGATGCTAAAA+TGG - chr7_2:23909732-23909751 Msa1053570:CDS 35.0%
!! ACAAGAGTTTTTCAAAGGGA+AGG - chr7_2:23909825-23909844 Msa1053570:CDS 35.0%
CACTAAGAATGTTCCAAACA+TGG - chr7_2:23909924-23909943 Msa1053570:CDS 35.0%
TTCAATACCAAGTGACAAAG+GGG + chr7_2:23909965-23909984 None:intergenic 35.0%
! TCACTTGGTATTGAATTGAC+CGG - chr7_2:23909970-23909989 Msa1053570:CDS 35.0%
CACCACACTCATAATATTTC+CGG + chr7_2:23909992-23910011 None:intergenic 35.0%
!! AATGGTACAGAAGTATTCCT+AGG + chr7_2:23910018-23910037 None:intergenic 35.0%
TAACCTTGTGTCTTCTTGAA+TGG + chr7_2:23910036-23910055 None:intergenic 35.0%
CCTTAATTAGGACTGAAGAT+TGG + chr7_2:23910077-23910096 None:intergenic 35.0%
CCAATCTTCAGTCCTAATTA+AGG - chr7_2:23910074-23910093 Msa1053570:intron 35.0%
CACCCTCATAAACCTTAATT+AGG + chr7_2:23910089-23910108 None:intergenic 35.0%
TATATTAAACGTCTCTGCAG+TGG - chr7_2:23910218-23910237 Msa1053570:intron 35.0%
AGTTGAAGCAAGAAATGCTT+TGG - chr7_2:23910371-23910390 Msa1053570:intron 35.0%
TTGATCTTCTCTTTGTCTAC+AGG + chr7_2:23910459-23910478 None:intergenic 35.0%
ACCAAGGGAAAAAGTTTGAT+TGG - chr7_2:23910489-23910508 Msa1053570:CDS 35.0%
!! ACCAATCAAACTTTTTCCCT+TGG + chr7_2:23910493-23910512 None:intergenic 35.0%
AGAAGATACCTTTGTGTTTG+TGG - chr7_2:23910524-23910543 Msa1053570:CDS 35.0%
CAAAAAGTCCACAAACACAA+AGG + chr7_2:23910535-23910554 None:intergenic 35.0%
! TGTGTTTGTGGACTTTTTGA+AGG - chr7_2:23910536-23910555 Msa1053570:CDS 35.0%
GCTATGAAGAAGATCAACAA+AGG - chr7_2:23910582-23910601 Msa1053570:CDS 35.0%
CAACAAAGGTTAATCTGATG+GGG - chr7_2:23910596-23910615 Msa1053570:CDS 35.0%
CTTGTGTATAATGTTGGAGT+TGG - chr7_2:23910661-23910680 Msa1053570:CDS 35.0%
AAATATGAGGGAGTTGCGAT+CGG - chr7_2:23908350-23908369 Msa1053570:three_prime_UTR 40.0%
ACTAATTCCCAAAGGCTGAT+TGG - chr7_2:23908488-23908507 Msa1053570:three_prime_UTR 40.0%
GCAGATGCAAAGAGGTTAAT+TGG - chr7_2:23908968-23908987 Msa1053570:three_prime_UTR 40.0%
!!! AGAGATTGCAGAGGCATTTT+TGG - chr7_2:23909153-23909172 Msa1053570:three_prime_UTR 40.0%
AAAGATGCAGGTGATATTGC+TGG - chr7_2:23909244-23909263 Msa1053570:three_prime_UTR 40.0%
! TTGCTGGTCTCAATGTAATG+CGG - chr7_2:23909260-23909279 Msa1053570:three_prime_UTR 40.0%
!! CACAGTTAGCTCTCTTTTGA+AGG + chr7_2:23909324-23909343 None:intergenic 40.0%
ACTTTGTGAAGGAGTTCAAG+AGG - chr7_2:23909494-23909513 Msa1053570:CDS 40.0%
GTTCAAGAGGAAGAACAAAG+AGG - chr7_2:23909507-23909526 Msa1053570:CDS 40.0%
! TGTCCTTTTTGCTCTTTCAC+AGG + chr7_2:23909575-23909594 None:intergenic 40.0%
GACACTTTCATATGACACTG+AGG - chr7_2:23909591-23909610 Msa1053570:CDS 40.0%
!! TGGTTCTTCTAGGATTCCTA+AGG - chr7_2:23909789-23909808 Msa1053570:CDS 40.0%
GACCGGAAATATTATGAGTG+TGG - chr7_2:23909987-23910006 Msa1053570:CDS 40.0%
TTATGAGTGTGGTGATTCCT+AGG - chr7_2:23909998-23910017 Msa1053570:CDS 40.0%
GTACCATTCAAGAAGACACA+AGG - chr7_2:23910030-23910049 Msa1053570:CDS 40.0%
ATAGCAAAGTATACGGTGAG+AGG + chr7_2:23910186-23910205 None:intergenic 40.0%
AGAGATTGAGAGAATGATCC+AGG - chr7_2:23910305-23910324 Msa1053570:intron 40.0%
ATCAACTCAGCAATGACCAA+GGG - chr7_2:23910474-23910493 Msa1053570:intron 40.0%
!! ACACAAAGGTATCTTCTTGC+TGG + chr7_2:23910521-23910540 None:intergenic 40.0%
ATCTGATGGGGAAAGTGATT+TGG - chr7_2:23910608-23910627 Msa1053570:CDS 40.0%
TGTTTGAGTGAGTAGACTTG+AGG - chr7_2:23910747-23910766 Msa1053570:five_prime_UTR 40.0%
CTTACTCGTGTGTTGGAGTA+TGG - chr7_2:23908390-23908409 Msa1053570:three_prime_UTR 45.0%
AGCATCACCAATCAGCCTTT+GGG + chr7_2:23908498-23908517 None:intergenic 45.0%
! TGGTGATGCTGCCAAAAATC+AGG - chr7_2:23908508-23908527 Msa1053570:three_prime_UTR 45.0%
TCTACTGTTGTGGCCCTTTA+AGG - chr7_2:23909024-23909043 Msa1053570:three_prime_UTR 45.0%
!! TGGCCCTTTAAGGTCATTTC+CGG - chr7_2:23909034-23909053 Msa1053570:three_prime_UTR 45.0%
GCACCGGAAATGACCTTAAA+GGG + chr7_2:23909040-23909059 None:intergenic 45.0%
! AGCACCGGAAATGACCTTAA+AGG + chr7_2:23909041-23909060 None:intergenic 45.0%
!! TGTCGGTTTGTCATTAGCAC+CGG + chr7_2:23909056-23909075 None:intergenic 45.0%
TCTTGTGAACTACATGGGTG+AGG - chr7_2:23909078-23909097 Msa1053570:three_prime_UTR 45.0%
GATAATCAACGAACCGACTG+CGG - chr7_2:23909282-23909301 Msa1053570:three_prime_UTR 45.0%
TTTATCTTTGACCTTGGCGG+TGG - chr7_2:23909361-23909380 Msa1053570:three_prime_UTR 45.0%
! TCAACCTCCTCAAGGCTTTT+GGG + chr7_2:23909546-23909565 None:intergenic 45.0%
CTGCCTGTGAAAGAGCAAAA+AGG - chr7_2:23909569-23909588 Msa1053570:CDS 45.0%
GTCGATGATGTTGTCCTTGT+TGG - chr7_2:23909766-23909785 Msa1053570:CDS 45.0%
GATGATGTTGTCCTTGTTGG+TGG - chr7_2:23909769-23909788 Msa1053570:CDS 45.0%
!! TCCTTGTTGGTGGTTCTTCT+AGG - chr7_2:23909779-23909798 Msa1053570:CDS 45.0%
TCCTAGAAGAACCACCAACA+AGG + chr7_2:23909783-23909802 None:intergenic 45.0%
!! CTTCTAGGATTCCTAAGGTG+AGG - chr7_2:23909794-23909813 Msa1053570:CDS 45.0%
TGTAATAGCTGCCTCACCTT+AGG + chr7_2:23909808-23909827 None:intergenic 45.0%
!! CAAGAGCATTAACCCTGATG+AGG - chr7_2:23909855-23909874 Msa1053570:CDS 45.0%
CATAAGCAACAGCCTCATCA+GGG + chr7_2:23909870-23909889 None:intergenic 45.0%
CTTCACTAAGCAAAACAGCC+TGG + chr7_2:23909903-23909922 None:intergenic 45.0%
ACATCTCTCAGCACCATGTT+TGG + chr7_2:23909940-23909959 None:intergenic 45.0%
GATGTTACCCCTTTGTCACT+TGG - chr7_2:23909955-23909974 Msa1053570:CDS 45.0%
CAAAGTATACGGTGAGAGGA+AGG + chr7_2:23910182-23910201 None:intergenic 45.0%
CCTTGAAATTGTGAGCTTCC+TGG + chr7_2:23910326-23910345 None:intergenic 45.0%
CCAGGAAGCTCACAATTTCA+AGG - chr7_2:23910323-23910342 Msa1053570:intron 45.0%
GATCAACTCAGCAATGACCA+AGG - chr7_2:23910473-23910492 Msa1053570:intron 45.0%
GTTGCGATCGGAATTGACCT+TGG - chr7_2:23908362-23908381 Msa1053570:three_prime_UTR 50.0%
CAGCATCACCAATCAGCCTT+TGG + chr7_2:23908499-23908518 None:intergenic 50.0%
CAATCTCTCGCATCTGTGAG+AGG + chr7_2:23909141-23909160 None:intergenic 50.0%
ACAGATGCGAGAGATTGCAG+AGG - chr7_2:23909144-23909163 Msa1053570:three_prime_UTR 50.0%
CGAAGAGCCACTAAAGATGC+AGG - chr7_2:23909232-23909251 Msa1053570:three_prime_UTR 50.0%
CATCAAAAGTTCCACCGCCA+AGG + chr7_2:23909375-23909394 None:intergenic 50.0%
! TTTGAAGTCAAGGCCACTGC+TGG - chr7_2:23909424-23909443 Msa1053570:CDS 50.0%
TATCGAAGTCTTCACCGCCT+AGG + chr7_2:23909459-23909478 None:intergenic 50.0%
! CTCAACCTCCTCAAGGCTTT+TGG + chr7_2:23909547-23909566 None:intergenic 50.0%
CCATAAGCAACAGCCTCATC+AGG + chr7_2:23909871-23909890 None:intergenic 50.0%
! CCTGATGAGGCTGTTGCTTA+TGG - chr7_2:23909868-23909887 Msa1053570:CDS 50.0%
AAAGTTCCTCTTGCTTCCCG+TGG - chr7_2:23910156-23910175 Msa1053570:intron 50.0%
TCTGCAGTGGAAGAAACCAG+TGG - chr7_2:23910231-23910250 Msa1053570:intron 50.0%
CACACGAGTAAGTCGTGCCA+AGG + chr7_2:23908382-23908401 None:intergenic 55.0%
GGCACGACTTACTCGTGTGT+TGG - chr7_2:23908383-23908402 Msa1053570:three_prime_UTR 55.0%
CTCGTGTGTTGGAGTATGGC+AGG - chr7_2:23908394-23908413 Msa1053570:three_prime_UTR 55.0%
AATCAACGAACCGACTGCGG+CGG - chr7_2:23909285-23909304 Msa1053570:three_prime_UTR 55.0%
TAGGTGAGTGTCTCCAGCAG+TGG + chr7_2:23909440-23909459 None:intergenic 55.0%
ACTGCTGGAGACACTCACCT+AGG - chr7_2:23909439-23909458 Msa1053570:CDS 55.0%
GTGGGAACCCAAAAGCCTTG+AGG - chr7_2:23909536-23909555 Msa1053570:CDS 55.0%
GGAACCCAAAAGCCTTGAGG+AGG - chr7_2:23909539-23909558 Msa1053570:CDS 55.0%
GGCAGTTCTCAACCTCCTCA+AGG + chr7_2:23909554-23909573 None:intergenic 55.0%
TGCTTATGGTGCAGCTGTCC+AGG - chr7_2:23909882-23909901 Msa1053570:CDS 55.0%
ATACGGTGAGAGGAAGGCCA+CGG + chr7_2:23910176-23910195 None:intergenic 55.0%
GCAGGAGCAGAACGATCGTG+TGG - chr7_2:23908412-23908431 Msa1053570:three_prime_UTR 60.0%
TATGCAAGAGCCGCCGCAGT+CGG + chr7_2:23909298-23909317 None:intergenic 60.0%
ACTGCGGCGGCTCTTGCATA+TGG - chr7_2:23909298-23909317 Msa1053570:three_prime_UTR 60.0%
GCTGGAGACACTCACCTAGG+CGG - chr7_2:23909442-23909461 Msa1053570:CDS 60.0%
TACGGTGAGAGGAAGGCCAC+GGG + chr7_2:23910175-23910194 None:intergenic 60.0%
GGAAGGCCACGGGAAGCAAG+AGG + chr7_2:23910165-23910184 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 23908204 23910840 23908204 ID=Msa1053570;Name=Msa1053570
chr7_2 mRNA 23908204 23910840 23908204 ID=Msa1053570-mRNA-1;Parent=Msa1053570;Name=Msa1053570-mRNA-1;_AED=0.01;_eAED=0.01;_QI=137|1|1|1|1|1|2|1177|303
chr7_2 exon 23908204 23910072 23908204 ID=Msa1053570-mRNA-1:exon:5249;Parent=Msa1053570-mRNA-1
chr7_2 exon 23910484 23910840 23910484 ID=Msa1053570-mRNA-1:exon:5248;Parent=Msa1053570-mRNA-1
chr7_2 five_prime_UTR 23910704 23910840 23910704 ID=Msa1053570-mRNA-1:five_prime_utr;Parent=Msa1053570-mRNA-1
chr7_2 CDS 23910484 23910703 23910484 ID=Msa1053570-mRNA-1:cds;Parent=Msa1053570-mRNA-1
chr7_2 CDS 23909381 23910072 23909381 ID=Msa1053570-mRNA-1:cds;Parent=Msa1053570-mRNA-1
chr7_2 three_prime_UTR 23908204 23909380 23908204 ID=Msa1053570-mRNA-1:three_prime_utr;Parent=Msa1053570-mRNA-1
Gene Sequence

>Msa1053570

ATGGCAAAAAAATATGAGGGAGTTGCGATCGGAATTGACCTTGGCACGACTTACTCGTGTGTTGGAGTATGGCAGGAGCAGAACGATCGTGTGGAAATTATTCACAATGATCAAGGAAACAAAACAACACCTTCTTGTGTTGCTTTCACTAATTCCCAAAGGCTGATTGGTGATGCTGCCAAAAATCAGGCTTCTTCTAACCCAATCAACACTGTATTTGATGCAAAGAGGTTAATTGGAAGGAAATATAGTGATTCCATTGTTCAGAATGATCTACTGTTGTGGCCCTTTAAGGTCATTTCCGGTGCTAATGACAAACCGACAATTCTTGTGAACTACATGGGTGAGGAAAAGCACTTTGTTGCTGAAGAAATATCATCTGTGAACCTCTCACAGATGCGAGAGATTGCAGAGGCATTTTTGGAGTCACCTGTTAAGAATGTAGTGATTACTGTACCTGCTTATTTCAATGATTCACAACGAAGAGCCACTAAAGATGCAGGTGATATTGCTGGTCTCAATGTAATGCGGATAATCAACGAACCGACTGCGGCGGCTCTTGCATATGGCCTTCAAAAGAGAGCTAACTGTGTCGATAAGAGAAACATTTTTATCTTTGACCTTGGCGGTGGAACTTTTGATGTGTCTATTCTTACAATAAAAAATCAGGTCTTTGAAGTCAAGGCCACTGCTGGAGACACTCACCTAGGCGGTGAAGACTTCGATAACAGAATGGTGAATCACTTTGTGAAGGAGTTCAAGAGGAAGAACAAAGAGGATATTAGTGGGAACCCAAAAGCCTTGAGGAGGTTGAGAACTGCCTGTGAAAGAGCAAAAAGGACACTTTCATATGACACTGAGGCCACAATTGACCTAGATGCTATATATCAAGGTATTGACTTTTGTTCATGA
Protein sequence

>Msa1053570

MAKKYEGVAIGIDLGTTYSCVGVWQEQNDRVEIIHNDQGNKTTPSCVAFTNSQRLIGDAAKNQASSNPINTVFDAKRLIGRKYSDSIVQNDLLLWPFKVISGANDKPTILVNYMGEEKHFVAEEISSVNLSQMREIAEAFLESPVKNVVITVPAYFNDSQRRATKDAGDIAGLNVMRIINEPTAAALAYGLQKRANCVDKRNIFIFDLGGGTFDVSILTIKNQVFEVKATAGDTHLGGEDFDNRMVNHFVKEFKRKNKEDISGNPKALRRLRTACERAKRTLSYDTEATIDLDAIYQGIDFCS*