Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132630 | sp|Q6NPF9|TRXY1_ARATH | 61.932 | 176 | 55 | 4 | 3 | 172 | 2 | 171 | 1.60e-65 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132630 | B7FGH7 | 93.642 | 173 | 7 | 4 | 1 | 173 | 1 | 169 | 5.84e-89 | 266 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0132630 | -0.844791 | 6.072459e-59 | -8.615850e-47 |
| Msa0038290 | Msa0132630 | 0.970199 | 2.961626e-131 | -8.615850e-47 |
| Msa0081020 | Msa0132630 | -0.823179 | 1.592531e-53 | -8.615850e-47 |
| Msa0101500 | Msa0132630 | 0.808209 | 3.466215e-50 | -8.615850e-47 |
| Msa0132630 | Msa0167500 | 0.803610 | 3.210581e-49 | -8.615850e-47 |
| Msa0132630 | Msa0168310 | -0.811425 | 7.045558e-51 | -8.615850e-47 |
| Msa0132630 | Msa0168410 | 0.823570 | 1.289893e-53 | -8.615850e-47 |
| Msa0132630 | Msa0173690 | -0.806323 | 8.698297e-50 | -8.615850e-47 |
| Msa0132630 | Msa0211030 | -0.806673 | 7.338506e-50 | -8.615850e-47 |
| Msa0132630 | Msa0231200 | -0.808785 | 2.610591e-50 | -8.615850e-47 |
| Msa0132630 | Msa0244640 | -0.844322 | 8.122201e-59 | -8.615850e-47 |
| Msa0132630 | Msa0248680 | -0.809900 | 1.505776e-50 | -8.615850e-47 |
| Msa0132630 | Msa0269970 | -0.815529 | 8.825170e-52 | -8.615850e-47 |
| Msa0132630 | Msa0270340 | -0.806161 | 9.410132e-50 | -8.615850e-47 |
| Msa0132630 | Msa0283330 | -0.831762 | 1.388769e-55 | -8.615850e-47 |
| Msa0132630 | Msa0307670 | -0.802737 | 4.866818e-49 | -8.615850e-47 |
| Msa0132630 | Msa0321620 | -0.825185 | 5.379909e-54 | -8.615850e-47 |
| Msa0132630 | Msa0323270 | -0.807686 | 4.477679e-50 | -8.615850e-47 |
| Msa0132630 | Msa0330860 | -0.824760 | 6.779936e-54 | -8.615850e-47 |
| Msa0132630 | Msa0349210 | -0.834246 | 3.348166e-56 | -8.615850e-47 |
| Msa0132630 | Msa0376630 | -0.803636 | 3.170853e-49 | -8.615850e-47 |
| Msa0132630 | Msa0379790 | 0.850261 | 1.904194e-60 | -8.615850e-47 |
| Msa0132630 | Msa0405680 | -0.810803 | 9.611658e-51 | -8.615850e-47 |
| Msa0132630 | Msa0425170 | -0.807229 | 5.598066e-50 | -8.615850e-47 |
| Msa0132630 | Msa0529030 | -0.816907 | 4.341045e-52 | -8.615850e-47 |
| Msa0132630 | Msa0530560 | -0.801428 | 9.047718e-49 | -8.615850e-47 |
| Msa0132630 | Msa0574050 | -0.844222 | 8.643405e-59 | -8.615850e-47 |
| Msa0132630 | Msa0577860 | 0.876291 | 1.569169e-68 | -8.615850e-47 |
| Msa0132630 | Msa0611210 | -0.809766 | 1.608782e-50 | -8.615850e-47 |
| Msa0132630 | Msa0657440 | -0.807314 | 5.369592e-50 | -8.615850e-47 |
| Msa0132630 | Msa0741650 | -0.818447 | 1.951062e-52 | -8.615850e-47 |
| Msa0132630 | Msa0756490 | -0.806937 | 6.453998e-50 | -8.615850e-47 |
| Msa0132630 | Msa0829300 | -0.876120 | 1.797569e-68 | -8.615850e-47 |
| Msa0132630 | Msa0829330 | -0.871816 | 5.120868e-67 | -8.615850e-47 |
| Msa0132630 | Msa0894400 | -0.804326 | 2.279713e-49 | -8.615850e-47 |
| Msa0132630 | Msa0894790 | -0.803083 | 4.129438e-49 | -8.615850e-47 |
| Msa0132630 | Msa0945630 | -0.817430 | 3.310641e-52 | -8.615850e-47 |
| Msa0132630 | Msa0993190 | -0.800903 | 1.158555e-48 | -8.615850e-47 |
| Msa0132630 | Msa1012080 | -0.824938 | 6.154916e-54 | -8.615850e-47 |
| Msa0132630 | Msa1021590 | -0.808863 | 2.513031e-50 | -8.615850e-47 |
| Msa0132630 | Msa1040150 | -0.803068 | 4.159284e-49 | -8.615850e-47 |
| Msa0132630 | Msa1044680 | -0.838341 | 3.046461e-57 | -8.615850e-47 |
| Msa0132630 | Msa1105640 | -0.834573 | 2.772372e-56 | -8.615850e-47 |
| Msa0132630 | Msa1128130 | -0.801416 | 9.096224e-49 | -8.615850e-47 |
| Msa0132630 | Msa1132840 | -0.800141 | 1.656596e-48 | -8.615850e-47 |
| Msa0132630 | Msa1148960 | -0.826947 | 2.051026e-54 | -8.615850e-47 |
| Msa0132630 | Msa1216110 | -0.801409 | 9.127617e-49 | -8.615850e-47 |
| Msa0132630 | Msa1303560 | -0.804824 | 1.794909e-49 | -8.615850e-47 |
| Msa0132630 | Msa1303650 | -0.802972 | 4.353400e-49 | -8.615850e-47 |
| Msa0132630 | Msa1325410 | 0.826992 | 2.000438e-54 | -8.615850e-47 |
| Msa0132630 | Msa1345610 | 0.852417 | 4.680859e-61 | -8.615850e-47 |
| Msa0132630 | Msa1347310 | -0.823611 | 1.262183e-53 | -8.615850e-47 |
| Msa0132630 | Msa1372040 | -0.833587 | 4.895463e-56 | -8.615850e-47 |
| Msa0132630 | Msa1405460 | -0.812288 | 4.571854e-51 | -8.615850e-47 |
| Msa0132630 | Msa1414640 | -0.819685 | 1.019981e-52 | -8.615850e-47 |
| Msa0132630 | Msa1417440 | 0.854280 | 1.367734e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132630 | MtrunA17_Chr1g0201781 | 94.220 | 173 | 6 | 4 | 1 | 173 | 1 | 169 | 3.79e-91 | 263 |
| Msa0132630 | MtrunA17_Chr1g0211871 | 38.614 | 101 | 60 | 1 | 72 | 170 | 76 | 176 | 4.03e-24 | 92.8 |
| Msa0132630 | MtrunA17_Chr3g0125821 | 36.634 | 101 | 64 | 0 | 70 | 170 | 74 | 174 | 1.64e-22 | 88.6 |
| Msa0132630 | MtrunA17_Chr8g0360031 | 36.082 | 97 | 62 | 0 | 70 | 166 | 77 | 173 | 4.49e-22 | 87.4 |
| Msa0132630 | MtrunA17_Chr2g0317731 | 28.994 | 169 | 108 | 2 | 10 | 166 | 2 | 170 | 4.70e-22 | 87.4 |
| Msa0132630 | MtrunA17_Chr1g0155721 | 40.789 | 76 | 44 | 1 | 80 | 155 | 26 | 100 | 1.74e-19 | 79.3 |
| Msa0132630 | MtrunA17_Chr7g0216481 | 35.955 | 89 | 55 | 2 | 78 | 166 | 44 | 130 | 7.23e-19 | 78.2 |
| Msa0132630 | MtrunA17_Chr3g0142051 | 38.158 | 76 | 46 | 1 | 80 | 155 | 26 | 100 | 1.68e-18 | 76.6 |
| Msa0132630 | MtrunA17_Chr5g0404831 | 35.644 | 101 | 60 | 3 | 69 | 166 | 14 | 112 | 1.97e-17 | 73.9 |
| Msa0132630 | MtrunA17_Chr4g0044731 | 28.099 | 121 | 80 | 1 | 57 | 170 | 49 | 169 | 1.22e-16 | 73.2 |
| Msa0132630 | MtrunA17_Chr5g0415771 | 38.095 | 63 | 38 | 1 | 81 | 143 | 40 | 101 | 1.02e-15 | 69.7 |
| Msa0132630 | MtrunA17_Chr2g0280411 | 35.227 | 88 | 55 | 2 | 79 | 166 | 28 | 113 | 3.92e-14 | 65.5 |
| Msa0132630 | MtrunA17_Chr1g0194961 | 31.915 | 94 | 61 | 2 | 72 | 162 | 155 | 248 | 7.43e-14 | 68.2 |
| Msa0132630 | MtrunA17_Chr1g0194961 | 34.343 | 99 | 58 | 4 | 80 | 172 | 44 | 141 | 6.12e-11 | 59.7 |
| Msa0132630 | MtrunA17_Chr5g0438731 | 31.915 | 94 | 62 | 1 | 62 | 155 | 60 | 151 | 9.94e-14 | 68.2 |
| Msa0132630 | MtrunA17_Chr5g0438731 | 29.808 | 104 | 66 | 3 | 72 | 169 | 198 | 300 | 8.56e-12 | 62.4 |
| Msa0132630 | MtrunA17_Chr1g0200731 | 36.735 | 98 | 57 | 3 | 72 | 166 | 101 | 196 | 1.07e-13 | 68.2 |
| Msa0132630 | MtrunA17_Chr4g0042051 | 34.066 | 91 | 58 | 2 | 80 | 170 | 30 | 118 | 7.81e-13 | 62.0 |
| Msa0132630 | MtrunA17_Chr5g0415761 | 30.556 | 72 | 49 | 1 | 71 | 142 | 31 | 101 | 1.02e-12 | 62.0 |
| Msa0132630 | MtrunA17_Chr2g0287471 | 31.325 | 83 | 57 | 0 | 73 | 155 | 37 | 119 | 3.33e-12 | 63.5 |
| Msa0132630 | MtrunA17_Chr2g0317701 | 29.167 | 120 | 80 | 2 | 55 | 169 | 31 | 150 | 9.11e-12 | 60.1 |
| Msa0132630 | MtrunA17_Chr5g0415741 | 32.258 | 62 | 41 | 1 | 81 | 142 | 39 | 99 | 1.33e-11 | 58.9 |
| Msa0132630 | MtrunA17_Chr2g0317721 | 29.897 | 97 | 68 | 0 | 73 | 169 | 48 | 144 | 4.62e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0132630 | AT1G76760.1 | 61.932 | 176 | 55 | 4 | 3 | 172 | 2 | 171 | 1.63e-66 | 201 |
| Msa0132630 | AT1G43560.1 | 64.286 | 154 | 50 | 2 | 25 | 173 | 14 | 167 | 2.57e-63 | 192 |
| Msa0132630 | AT1G50320.1 | 44.554 | 101 | 54 | 1 | 72 | 170 | 77 | 177 | 6.47e-26 | 98.2 |
| Msa0132630 | AT1G03680.1 | 35.714 | 98 | 63 | 0 | 72 | 169 | 82 | 179 | 1.85e-22 | 89.0 |
| Msa0132630 | AT3G15360.1 | 32.653 | 147 | 90 | 2 | 21 | 164 | 49 | 189 | 1.47e-20 | 84.3 |
| Msa0132630 | AT5G39950.1 | 35.227 | 88 | 55 | 2 | 78 | 165 | 43 | 128 | 1.72e-17 | 74.7 |
| Msa0132630 | AT4G03520.1 | 30.526 | 95 | 66 | 0 | 72 | 166 | 88 | 182 | 3.81e-17 | 75.5 |
| Msa0132630 | AT3G51030.1 | 41.026 | 78 | 44 | 2 | 79 | 155 | 24 | 100 | 6.89e-17 | 72.8 |
| Msa0132630 | AT1G59730.1 | 32.039 | 103 | 67 | 3 | 64 | 166 | 26 | 125 | 2.99e-16 | 71.6 |
| Msa0132630 | AT2G15570.1 | 28.302 | 106 | 76 | 0 | 65 | 170 | 67 | 172 | 5.59e-16 | 72.0 |
| Msa0132630 | AT2G15570.2 | 28.571 | 105 | 75 | 0 | 66 | 170 | 69 | 173 | 8.24e-16 | 71.6 |
| Msa0132630 | AT1G45145.1 | 35.294 | 85 | 53 | 2 | 81 | 165 | 26 | 108 | 2.36e-15 | 68.9 |
| Msa0132630 | AT1G19730.1 | 30.952 | 84 | 58 | 0 | 76 | 159 | 22 | 105 | 2.52e-14 | 66.2 |
| Msa0132630 | AT3G56420.1 | 36.250 | 80 | 50 | 1 | 80 | 159 | 60 | 138 | 7.93e-14 | 65.9 |
| Msa0132630 | AT3G56420.2 | 36.250 | 80 | 50 | 1 | 80 | 159 | 60 | 138 | 7.93e-14 | 65.9 |
| Msa0132630 | AT3G56420.3 | 36.250 | 80 | 50 | 1 | 80 | 159 | 60 | 138 | 7.93e-14 | 65.9 |
| Msa0132630 | AT1G04980.1 | 34.831 | 89 | 58 | 0 | 70 | 158 | 38 | 126 | 1.71e-13 | 67.8 |
| Msa0132630 | AT1G35620.1 | 37.500 | 96 | 55 | 3 | 70 | 162 | 38 | 131 | 3.33e-13 | 67.0 |
| Msa0132630 | AT5G42980.1 | 34.211 | 76 | 49 | 1 | 80 | 155 | 25 | 99 | 9.00e-13 | 62.0 |
| Msa0132630 | AT2G47470.1 | 29.032 | 93 | 63 | 2 | 73 | 162 | 150 | 242 | 1.11e-12 | 65.1 |
| Msa0132630 | AT2G47470.3 | 29.032 | 93 | 63 | 2 | 73 | 162 | 150 | 242 | 1.27e-12 | 65.1 |
| Msa0132630 | AT2G47470.4 | 29.167 | 96 | 65 | 2 | 70 | 162 | 147 | 242 | 1.46e-12 | 64.7 |
| Msa0132630 | AT2G47470.2 | 29.293 | 99 | 67 | 2 | 70 | 165 | 147 | 245 | 2.07e-12 | 63.9 |
| Msa0132630 | AT1G69880.1 | 32.258 | 93 | 57 | 2 | 78 | 170 | 55 | 141 | 2.07e-12 | 62.0 |
| Msa0132630 | AT2G32920.1 | 36.735 | 98 | 57 | 3 | 62 | 158 | 31 | 124 | 3.06e-12 | 64.3 |
| Msa0132630 | AT2G32920.1 | 30.337 | 89 | 59 | 2 | 72 | 158 | 170 | 257 | 7.92e-11 | 60.1 |
| Msa0132630 | AT3G17880.2 | 37.313 | 67 | 41 | 1 | 89 | 155 | 292 | 357 | 3.51e-12 | 63.9 |
| Msa0132630 | AT3G54960.2 | 32.258 | 93 | 62 | 1 | 70 | 162 | 105 | 196 | 4.05e-12 | 63.9 |
| Msa0132630 | AT3G17880.1 | 37.313 | 67 | 41 | 1 | 89 | 155 | 299 | 364 | 4.36e-12 | 63.5 |
| Msa0132630 | AT3G06730.1 | 30.814 | 172 | 101 | 5 | 11 | 169 | 17 | 183 | 6.41e-12 | 61.2 |
| Msa0132630 | AT3G08710.2 | 33.708 | 89 | 55 | 2 | 70 | 155 | 30 | 117 | 7.01e-12 | 60.5 |
| Msa0132630 | AT3G08710.3 | 33.708 | 89 | 55 | 2 | 70 | 155 | 30 | 117 | 7.01e-12 | 60.5 |
| Msa0132630 | AT3G08710.1 | 33.708 | 89 | 55 | 2 | 70 | 155 | 30 | 117 | 7.01e-12 | 60.5 |
| Msa0132630 | AT5G16400.1 | 37.079 | 89 | 53 | 3 | 79 | 166 | 94 | 180 | 2.91e-11 | 59.7 |
| Msa0132630 | AT3G54960.1 | 32.258 | 93 | 62 | 1 | 70 | 162 | 105 | 196 | 2.98e-11 | 61.2 |
| Msa0132630 | AT1G11530.1 | 29.885 | 87 | 59 | 2 | 80 | 166 | 22 | 106 | 6.04e-11 | 57.4 |
Find 64 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAACTTTCATCATCTTTA+AGG | 0.037363 | 1_3:-63854628 | Msa0132630:CDS |
| ATATCTATTATTTATTTCTT+TGG | 0.190546 | 1_3:+63856530 | None:intergenic |
| GTGTGGTCCTTGTCAGTTCA+TGG | 0.318473 | 1_3:-63854760 | Msa0132630:CDS |
| TATCTATTATTTATTTCTTT+GGG | 0.318796 | 1_3:+63856531 | None:intergenic |
| CTGTGGTCAGGTTCAATTTG+TGG | 0.343285 | 1_3:+63853048 | None:intergenic |
| AGAGGAAGACGCTGCTGATA+TGG | 0.343937 | 1_3:+63856447 | None:intergenic |
| AACTGTACGAAAGTTGGATT+TGG | 0.379518 | 1_3:-63853086 | Msa0132630:three_prime_UTR |
| TGCCTCAATGTTGTATTTGT+TGG | 0.387952 | 1_3:+63854653 | None:intergenic |
| GAAACGAGGGCGGGAGGAAG+AGG | 0.407611 | 1_3:+63856303 | None:intergenic |
| CTCTTCTTCGTCCACACGTC+TGG | 0.425949 | 1_3:-63856404 | Msa0132630:CDS |
| AGAAAACCAACTGCTCTGTC+TGG | 0.431411 | 1_3:+63856584 | None:intergenic |
| CAAATCATCAAAAGAGGAAA+AGG | 0.443022 | 1_3:+63854994 | None:intergenic |
| TTTATTTCTTTGGGAATTGA+CGG | 0.450323 | 1_3:+63856540 | None:intergenic |
| ACTGCTCGCCTTCTTCCAAT+TGG | 0.456582 | 1_3:-63856340 | Msa0132630:CDS |
| AACAATGTGCAAGTCATGTT+AGG | 0.457029 | 1_3:-63853009 | Msa0132630:three_prime_UTR |
| AGTTGCAACTGTACGAAAGT+TGG | 0.458586 | 1_3:-63853092 | Msa0132630:three_prime_UTR |
| GCATAGAAGTCAACAAATAC+AGG | 0.470351 | 1_3:+63854953 | None:intergenic |
| AGACATAAGCACCTGTGGTC+AGG | 0.473819 | 1_3:+63853036 | None:intergenic |
| AGTTTGTCAATCGGAATGTT+GGG | 0.474535 | 1_3:-63853368 | Msa0132630:three_prime_UTR |
| CAAAATGAGAACGAACAGAT+TGG | 0.476905 | 1_3:+63856486 | None:intergenic |
| AGGAAGTAGGAAACGAGGGC+GGG | 0.481188 | 1_3:+63856294 | None:intergenic |
| GAGTTTGTCAATCGGAATGT+TGG | 0.483482 | 1_3:-63853369 | Msa0132630:three_prime_UTR |
| TGCTGATATGGAAGCGGCCA+TGG | 0.484305 | 1_3:+63856459 | None:intergenic |
| GAAAGACGGCGAGTACCAAT+TGG | 0.490211 | 1_3:+63856325 | None:intergenic |
| CAACTTACAAAGCGATCAAA+GGG | 0.495557 | 1_3:+63854597 | None:intergenic |
| CACATACATGGTTGGATAGG+AGG | 0.496043 | 1_3:-63853343 | Msa0132630:three_prime_UTR |
| GTCAACAAATACAGGCTTGT+CGG | 0.497227 | 1_3:+63854961 | None:intergenic |
| TCCTTAAAGATGATGAAAGT+TGG | 0.497295 | 1_3:+63854627 | None:intergenic |
| ACTTTCATCATCTTTAAGGA+TGG | 0.499489 | 1_3:-63854624 | Msa0132630:CDS |
| TGCAAGCAAATCATCAAAAG+AGG | 0.504002 | 1_3:+63854988 | None:intergenic |
| GACCACAGGTGCTTATGTCT+TGG | 0.514527 | 1_3:-63853033 | Msa0132630:three_prime_UTR |
| CCAACTTACAAAGCGATCAA+AGG | 0.517391 | 1_3:+63854596 | None:intergenic |
| GGCGAGCAGTTCGAAATTGA+AGG | 0.521846 | 1_3:+63856353 | None:intergenic |
| AAGTAGGAAACGAGGGCGGG+AGG | 0.525596 | 1_3:+63856297 | None:intergenic |
| GGCGGGAGGAAGAGGAAAGA+CGG | 0.525873 | 1_3:+63856311 | None:intergenic |
| AAAAGTCCAGACAGAGCAGT+TGG | 0.528989 | 1_3:-63856590 | Msa0132630:five_prime_UTR |
| AGGAGTGAAAGGGAGAGGAA+AGG | 0.535066 | 1_3:-63856619 | None:intergenic |
| GTTCATGGTTCCTGTACTTG+AGG | 0.555079 | 1_3:-63854745 | Msa0132630:CDS |
| GCGCTCACTTCCTCAAGTAC+AGG | 0.556326 | 1_3:+63854735 | None:intergenic |
| GTTGGGATCACATACATGGT+TGG | 0.565508 | 1_3:-63853351 | Msa0132630:three_prime_UTR |
| TGTTACTTACGAGAGGAAGT+AGG | 0.572136 | 1_3:+63856281 | None:intergenic |
| ACGAAGAAGAGTTCAAAGAA+TGG | 0.574201 | 1_3:+63856416 | None:intergenic |
| GATCACATACATGGTTGGAT+AGG | 0.582401 | 1_3:-63853346 | Msa0132630:three_prime_UTR |
| TTTCAGTTAAATGAAGACAC+AGG | 0.583049 | 1_3:-63853391 | Msa0132630:intron |
| CACAAATTGAACCTGACCAC+AGG | 0.583927 | 1_3:-63853047 | Msa0132630:three_prime_UTR |
| GAGGAAGTAGGAAACGAGGG+CGG | 0.585576 | 1_3:+63856293 | None:intergenic |
| GGCGAGTACCAATTGGAAGA+AGG | 0.589024 | 1_3:+63856332 | None:intergenic |
| TTGTATTTGTTGGCAATGCT+AGG | 0.592667 | 1_3:+63854663 | None:intergenic |
| AGACGCTGCTGATATGGAAG+CGG | 0.596794 | 1_3:+63856453 | None:intergenic |
| AGACACAGGAGTTTGTCAAT+CGG | 0.598830 | 1_3:-63853377 | Msa0132630:three_prime_UTR |
| TTGTTGACTTCTATGCAACC+TGG | 0.598842 | 1_3:-63854946 | Msa0132630:intron |
| GAATGTTGGGATCACATACA+TGG | 0.601877 | 1_3:-63853355 | Msa0132630:three_prime_UTR |
| TTATTGCTTAACGTTGAGAG+TGG | 0.611598 | 1_3:+63853545 | None:intergenic |
| TACTTGAGGAAGTGAGCGCT+CGG | 0.618555 | 1_3:-63854731 | Msa0132630:CDS |
| TCAACGTTAAGCAATAACTC+TGG | 0.625204 | 1_3:-63853539 | Msa0132630:intron |
| AAGAAGAGTTCAAAGAATGG+AGG | 0.632769 | 1_3:+63856419 | None:intergenic |
| TGCCAAGACATAAGCACCTG+TGG | 0.649363 | 1_3:+63853031 | None:intergenic |
| CGAGAGGAAGTAGGAAACGA+GGG | 0.659041 | 1_3:+63856290 | None:intergenic |
| TGCCAACAAATACAACATTG+AGG | 0.660640 | 1_3:-63854655 | Msa0132630:CDS |
| ATTGGATAATCAGAAAACAA+TGG | 0.661635 | 1_3:+63856504 | None:intergenic |
| CAAAGAATGGAGGATTACAG+AGG | 0.663758 | 1_3:+63856429 | None:intergenic |
| ACAGGAACCATGAACTGACA+AGG | 0.685218 | 1_3:+63854753 | None:intergenic |
| ACGAGAGGAAGTAGGAAACG+AGG | 0.685474 | 1_3:+63856289 | None:intergenic |
| TGATGAAGGTACCAGACGTG+TGG | 0.715833 | 1_3:+63856393 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCTATTATTTATTTCTTT+GGG | + | chr1_3:63853086-63853105 | None:intergenic | 10.0% |
| !!! | ATATCTATTATTTATTTCTT+TGG | + | chr1_3:63853087-63853106 | None:intergenic | 10.0% |
| !! | TAATAATGGTTATTATAAAA+CGG | + | chr1_3:63853392-63853411 | None:intergenic | 10.0% |
| !! | AATTCAATAAGTATATATAT+GGG | + | chr1_3:63853881-63853900 | None:intergenic | 10.0% |
| !! | AAATTCAATAAGTATATATA+TGG | + | chr1_3:63853882-63853901 | None:intergenic | 10.0% |
| !!! | TAAACAATCAAATTTTTTAT+TGG | + | chr1_3:63856367-63856386 | None:intergenic | 10.0% |
| !!! | TATATAATTTAGTTTTGATT+TGG | - | chr1_3:63856485-63856504 | Msa0132630:five_prime_UTR | 10.0% |
| !!! | ATATAATTTAGTTTTGATTT+GGG | - | chr1_3:63856486-63856505 | Msa0132630:five_prime_UTR | 10.0% |
| !! | TGAAGAAAGAATAATAATAA+TGG | + | chr1_3:63853406-63853425 | None:intergenic | 15.0% |
| !!! | ATTTTATTTATACTTGTTGT+TGG | - | chr1_3:63853428-63853447 | Msa0132630:intron | 15.0% |
| !! | TAATAAATTAGTGAATAACT+TGG | + | chr1_3:63853459-63853478 | None:intergenic | 15.0% |
| !!! | TAATTTTTTTGGAATACAAA+AGG | - | chr1_3:63854173-63854192 | Msa0132630:intron | 15.0% |
| !! | TTAATGATTTAAATTGAATG+CGG | + | chr1_3:63855093-63855112 | None:intergenic | 15.0% |
| !! | CAAGTATCATTTAAATAAAA+TGG | + | chr1_3:63856133-63856152 | None:intergenic | 15.0% |
| !!! | TATAATTTAGTTTTGATTTG+GGG | - | chr1_3:63856487-63856506 | Msa0132630:five_prime_UTR | 15.0% |
| !! | AAGGAGAAAAATAAAATAGT+TGG | + | chr1_3:63853363-63853382 | None:intergenic | 20.0% |
| !! | AATAAGTATATATATGGGTT+TGG | + | chr1_3:63853876-63853895 | None:intergenic | 20.0% |
| !!! | ATCCAATTTTTTCCTATATT+TGG | - | chr1_3:63854118-63854137 | Msa0132630:intron | 20.0% |
| !! | ATCCAAATATAGGAAAAAAT+TGG | + | chr1_3:63854123-63854142 | None:intergenic | 20.0% |
| !! | AAAAAAATTAGCGTAAATTC+TGG | + | chr1_3:63854163-63854182 | None:intergenic | 20.0% |
| !!! | AGAATTTACGCTAATTTTTT+TGG | - | chr1_3:63854162-63854181 | Msa0132630:intron | 20.0% |
| !! | TCAGTAAGTTAAAAGAATAT+CGG | + | chr1_3:63855182-63855201 | None:intergenic | 20.0% |
| !!! | TTATAGATAGTTAGTTTCAA+TGG | - | chr1_3:63855241-63855260 | Msa0132630:intron | 20.0% |
| !!! | CATGCATATAATTAATTTGT+AGG | - | chr1_3:63855806-63855825 | Msa0132630:intron | 20.0% |
| !! | AATATACAAAACATCAATGT+AGG | + | chr1_3:63855915-63855934 | None:intergenic | 20.0% |
| !!! | ACCAAAATTTTATCTAACTT+GGG | + | chr1_3:63855991-63856010 | None:intergenic | 20.0% |
| !!! | ATGTACAAGAATTTTGATAT+TGG | + | chr1_3:63856463-63856482 | None:intergenic | 20.0% |
| !!! | ATAATTTAGTTTTGATTTGG+GGG | - | chr1_3:63856488-63856507 | Msa0132630:five_prime_UTR | 20.0% |
| !! | TTTATTTCTTTGGGAATTGA+CGG | + | chr1_3:63853077-63853096 | None:intergenic | 25.0% |
| ! | ATTGGATAATCAGAAAACAA+TGG | + | chr1_3:63853113-63853132 | None:intergenic | 25.0% |
| ! | TATTATAAAACGGAAAGGAA+AGG | + | chr1_3:63853382-63853401 | None:intergenic | 25.0% |
| ! | ATGGTTATTATAAAACGGAA+AGG | + | chr1_3:63853387-63853406 | None:intergenic | 25.0% |
| !! | TGAAATATATAGTGTTGGAA+GGG | + | chr1_3:63853640-63853659 | None:intergenic | 25.0% |
| ! | TTCCAACACTATATATTTCA+CGG | - | chr1_3:63853640-63853659 | Msa0132630:intron | 25.0% |
| ! | AATCAAAAGGTCTAAGTTTA+GGG | + | chr1_3:63853720-63853739 | None:intergenic | 25.0% |
| ! | AATTTAAGCACTTATAAGCA+GGG | - | chr1_3:63853897-63853916 | Msa0132630:intron | 25.0% |
| ! | AACTACAAATTTACTAAACG+CGG | - | chr1_3:63854199-63854218 | Msa0132630:intron | 25.0% |
| ! | ACTGTTAAACTGTTAAACTA+TGG | - | chr1_3:63854457-63854476 | Msa0132630:intron | 25.0% |
| ! | AAAACAATATCCAAAAATGC+TGG | + | chr1_3:63854575-63854594 | None:intergenic | 25.0% |
| !! | TTTTGGATATTGTTTTCTGT+AGG | - | chr1_3:63854579-63854598 | Msa0132630:intron | 25.0% |
| ! | AGTAAGTTAAAAGAATATCG+GGG | + | chr1_3:63855180-63855199 | None:intergenic | 25.0% |
| ! | CAGTAAGTTAAAAGAATATC+GGG | + | chr1_3:63855181-63855200 | None:intergenic | 25.0% |
| ! | AATCAAATGCAGTATCATTA+TGG | + | chr1_3:63855311-63855330 | None:intergenic | 25.0% |
| ! | CTTAACCAAAATTAGGAATT+AGG | + | chr1_3:63855449-63855468 | None:intergenic | 25.0% |
| ! | ATCATGTCTTAACCAAAATT+AGG | + | chr1_3:63855456-63855475 | None:intergenic | 25.0% |
| !!! | TTTTGGTTAAGACATGATAT+TGG | - | chr1_3:63855458-63855477 | Msa0132630:intron | 25.0% |
| ! | ACTTCAACATAATGAAATTG+AGG | - | chr1_3:63855517-63855536 | Msa0132630:intron | 25.0% |
| ! | TTAGAATGTAAAGAACCTAA+AGG | - | chr1_3:63855549-63855568 | Msa0132630:intron | 25.0% |
| ! | TCTACTTAAAAACAACCTTT+AGG | + | chr1_3:63855567-63855586 | None:intergenic | 25.0% |
| ! | GCAATTTACAACAATAAGAA+AGG | + | chr1_3:63855729-63855748 | None:intergenic | 25.0% |
| !! | CCAAAATTTTATCTAACTTG+GGG | + | chr1_3:63855990-63856009 | None:intergenic | 25.0% |
| !! | GACCAAAATTTTATCTAACT+TGG | + | chr1_3:63855992-63856011 | None:intergenic | 25.0% |
| !! | ATAAAATGGTACTGAATTGA+TGG | + | chr1_3:63856119-63856138 | None:intergenic | 25.0% |
| ! | ATTTAAATGATACTTGCTTC+AGG | - | chr1_3:63856137-63856156 | Msa0132630:intron | 25.0% |
| ! | TTTAACTGAAAAAAGTAGCA+AGG | + | chr1_3:63856214-63856233 | None:intergenic | 25.0% |
| !!! | CAATCAAATTTTTTATTGGC+TGG | + | chr1_3:63856363-63856382 | None:intergenic | 25.0% |
| GGTAATATGATTCAGAAATG+AGG | + | chr1_3:63853619-63853638 | None:intergenic | 30.0% | |
| ! | GTGAAATATATAGTGTTGGA+AGG | + | chr1_3:63853641-63853660 | None:intergenic | 30.0% |
| CAATCAAAAGGTCTAAGTTT+AGG | + | chr1_3:63853721-63853740 | None:intergenic | 30.0% | |
| ! | GAAAAACCATTTTCCTTTCA+CGG | + | chr1_3:63853842-63853861 | None:intergenic | 30.0% |
| GAATTTAAGCACTTATAAGC+AGG | - | chr1_3:63853896-63853915 | Msa0132630:intron | 30.0% | |
| ATTATGTCGTGTCAAAATTG+CGG | - | chr1_3:63854018-63854037 | Msa0132630:intron | 30.0% | |
| !! | TGTAAGCAGGGTTTTAATAA+AGG | + | chr1_3:63854051-63854070 | None:intergenic | 30.0% |
| CAAATCATCAAAAGAGGAAA+AGG | + | chr1_3:63854623-63854642 | None:intergenic | 30.0% | |
| ATAAAGAGAGGAGAAGAAAA+TGG | + | chr1_3:63854716-63854735 | None:intergenic | 30.0% | |
| CATGAAATATAACCAGCTAA+AGG | + | chr1_3:63854760-63854779 | None:intergenic | 30.0% | |
| TCCTTAAAGATGATGAAAGT+TGG | + | chr1_3:63854990-63855009 | None:intergenic | 30.0% | |
| ! | ACTTTCATCATCTTTAAGGA+TGG | - | chr1_3:63854990-63855009 | Msa0132630:CDS | 30.0% |
| CATGAAAAATTGTGATGTCA+AGG | - | chr1_3:63855278-63855297 | Msa0132630:intron | 30.0% | |
| ! | TTCTGTGTATTTTCTATGAC+TGG | + | chr1_3:63855339-63855358 | None:intergenic | 30.0% |
| ! | AATCGCCTAATTCCTAATTT+TGG | - | chr1_3:63855441-63855460 | Msa0132630:intron | 30.0% |
| ! | TAAGTAGAAACTTTTGTCTG+TGG | - | chr1_3:63855579-63855598 | Msa0132630:intron | 30.0% |
| CGTCATATTTGAAAAAGTGA+AGG | - | chr1_3:63855649-63855668 | Msa0132630:intron | 30.0% | |
| TTGAAAAAGTGAAGGAATGA+AGG | - | chr1_3:63855657-63855676 | Msa0132630:intron | 30.0% | |
| ! | GTGATGAGATTTAAGATGAA+TGG | + | chr1_3:63855751-63855770 | None:intergenic | 30.0% |
| TAAATCTCATCACAGTCATT+TGG | - | chr1_3:63855758-63855777 | Msa0132630:intron | 30.0% | |
| TGACAAGACAAAAGAAAACT+AGG | - | chr1_3:63855935-63855954 | Msa0132630:intron | 30.0% | |
| ACAAAAGAAAACTAGGATGT+TGG | - | chr1_3:63855942-63855961 | Msa0132630:intron | 30.0% | |
| ! | AATTTTATCTAACTTGGGGA+AGG | + | chr1_3:63855986-63856005 | None:intergenic | 30.0% |
| ! | CCCCAAGTTAGATAAAATTT+TGG | - | chr1_3:63855987-63856006 | Msa0132630:intron | 30.0% |
| !! | TTTTGGTCTTCATGATTTTC+AGG | - | chr1_3:63856004-63856023 | Msa0132630:intron | 30.0% |
| ! | AAAGTAGCAAGGTATTTAGA+GGG | + | chr1_3:63856203-63856222 | None:intergenic | 30.0% |
| ! | AAAAGTAGCAAGGTATTTAG+AGG | + | chr1_3:63856204-63856223 | None:intergenic | 30.0% |
| TTTCAGTTAAATGAAGACAC+AGG | - | chr1_3:63856223-63856242 | Msa0132630:intron | 30.0% | |
| TGGATCTTGGCAAAAATAAT+GGG | + | chr1_3:63856343-63856362 | None:intergenic | 30.0% | |
| !!! | ATTTTTTATTGGCTGGATCT+TGG | + | chr1_3:63856356-63856375 | None:intergenic | 30.0% |
| CAAAATGAGAACGAACAGAT+TGG | + | chr1_3:63853131-63853150 | None:intergenic | 35.0% | |
| AAGAAGAGTTCAAAGAATGG+AGG | + | chr1_3:63853198-63853217 | None:intergenic | 35.0% | |
| ACGAAGAAGAGTTCAAAGAA+TGG | + | chr1_3:63853201-63853220 | None:intergenic | 35.0% | |
| ! | GAAGATGATGATGATGATGA+AGG | + | chr1_3:63853238-63853257 | None:intergenic | 35.0% |
| TAGTGCACTTTCTAGATGTT+TGG | - | chr1_3:63853524-63853543 | Msa0132630:intron | 35.0% | |
| AGTGCACTTTCTAGATGTTT+GGG | - | chr1_3:63853525-63853544 | Msa0132630:intron | 35.0% | |
| GTCCGTGAAATATATAGTGT+TGG | + | chr1_3:63853645-63853664 | None:intergenic | 35.0% | |
| CACTATATATTTCACGGACT+AGG | - | chr1_3:63853646-63853665 | Msa0132630:intron | 35.0% | |
| !!! | TAGGCTTTTGTTTTGGTGTT+TGG | - | chr1_3:63853665-63853684 | Msa0132630:intron | 35.0% |
| CCATCCACCAAAAATCTTTA+GGG | - | chr1_3:63853741-63853760 | Msa0132630:intron | 35.0% | |
| ! | AACCAGACCCTAAAGATTTT+TGG | + | chr1_3:63853751-63853770 | None:intergenic | 35.0% |
| !! | AAAAATCTTTAGGGTCTGGT+TGG | - | chr1_3:63853750-63853769 | Msa0132630:intron | 35.0% |
| CTGCAATTGCAATCATGTTA+TGG | - | chr1_3:63853974-63853993 | Msa0132630:intron | 35.0% | |
| GAATTTATGACGTGTAAGCA+GGG | + | chr1_3:63854063-63854082 | None:intergenic | 35.0% | |
| AGAATTTATGACGTGTAAGC+AGG | + | chr1_3:63854064-63854083 | None:intergenic | 35.0% | |
| ! | AATTATCGCCTGATTTGATC+AGG | - | chr1_3:63854250-63854269 | Msa0132630:intron | 35.0% |
| ! | ATTATCGCCTGATTTGATCA+GGG | - | chr1_3:63854251-63854270 | Msa0132630:intron | 35.0% |
| ATCAGGGCAATCATCATAAA+TGG | - | chr1_3:63854267-63854286 | Msa0132630:intron | 35.0% | |
| ACTGTTAAACTATGGCTTCA+AGG | - | chr1_3:63854465-63854484 | Msa0132630:intron | 35.0% | |
| TGCAAGCAAATCATCAAAAG+AGG | + | chr1_3:63854629-63854648 | None:intergenic | 35.0% | |
| GCATAGAAGTCAACAAATAC+AGG | + | chr1_3:63854664-63854683 | None:intergenic | 35.0% | |
| AGAAGAAAATGGAAAACGCA+CGG | + | chr1_3:63854705-63854724 | None:intergenic | 35.0% | |
| TTCTTCTCCTCTCTTTATGT+TGG | - | chr1_3:63854718-63854737 | Msa0132630:CDS | 35.0% | |
| TCTTCTCCTCTCTTTATGTT+GGG | - | chr1_3:63854719-63854738 | Msa0132630:CDS | 35.0% | |
| TTCAAACCCAACATAAAGAG+AGG | + | chr1_3:63854728-63854747 | None:intergenic | 35.0% | |
| !!! | GAAGCATTTTTTCCTTTAGC+TGG | - | chr1_3:63854745-63854764 | Msa0132630:CDS | 35.0% |
| ! | TTGTATTTGTTGGCAATGCT+AGG | + | chr1_3:63854954-63854973 | None:intergenic | 35.0% |
| TGCCAACAAATACAACATTG+AGG | - | chr1_3:63854959-63854978 | Msa0132630:CDS | 35.0% | |
| TGCCTCAATGTTGTATTTGT+TGG | + | chr1_3:63854964-63854983 | None:intergenic | 35.0% | |
| GCCAACTTTCATCATCTTTA+AGG | - | chr1_3:63854986-63855005 | Msa0132630:CDS | 35.0% | |
| CAACTTACAAAGCGATCAAA+GGG | + | chr1_3:63855020-63855039 | None:intergenic | 35.0% | |
| ! | AAATCTTTTCAGCTTCTTGC+TGG | - | chr1_3:63855357-63855376 | Msa0132630:intron | 35.0% |
| ! | AATCTTTTCAGCTTCTTGCT+GGG | - | chr1_3:63855358-63855377 | Msa0132630:intron | 35.0% |
| TGTAGAAGACTTGTATGTAG+AGG | - | chr1_3:63855418-63855437 | Msa0132630:intron | 35.0% | |
| TGTCTGTGGTCTATAACATA+TGG | - | chr1_3:63855593-63855612 | Msa0132630:intron | 35.0% | |
| TTATTGCTTAACGTTGAGAG+TGG | + | chr1_3:63856072-63856091 | None:intergenic | 35.0% | |
| TCAACGTTAAGCAATAACTC+TGG | - | chr1_3:63856075-63856094 | Msa0132630:intron | 35.0% | |
| AGTTTGTCAATCGGAATGTT+GGG | - | chr1_3:63856246-63856265 | Msa0132630:intron | 35.0% | |
| CTGGATCTTGGCAAAAATAA+TGG | + | chr1_3:63856344-63856363 | None:intergenic | 35.0% | |
| AACTGTACGAAAGTTGGATT+TGG | - | chr1_3:63856528-63856547 | Msa0132630:five_prime_UTR | 35.0% | |
| !!! | ACAGAGCAGTTGGTTTTCTT+GGG | - | chr1_3:63853034-63853053 | Msa0132630:three_prime_UTR | 40.0% |
| !!! | CGTTCTCATTTTGACTACCA+TGG | - | chr1_3:63853138-63853157 | Msa0132630:three_prime_UTR | 40.0% |
| CAAAGAATGGAGGATTACAG+AGG | + | chr1_3:63853188-63853207 | None:intergenic | 40.0% | |
| ! | TGTTACTTACGAGAGGAAGT+AGG | + | chr1_3:63853336-63853355 | None:intergenic | 40.0% |
| !! | TGGTTAGTGTTACTTACGAG+AGG | + | chr1_3:63853343-63853362 | None:intergenic | 40.0% |
| GTGCACTTTCTAGATGTTTG+GGG | - | chr1_3:63853526-63853545 | Msa0132630:intron | 40.0% | |
| ! | TTTGGTGGATGGCAATCAAA+AGG | + | chr1_3:63853733-63853752 | None:intergenic | 40.0% |
| GCCATCCACCAAAAATCTTT+AGG | - | chr1_3:63853740-63853759 | Msa0132630:intron | 40.0% | |
| !!! | CCCTAAAGATTTTTGGTGGA+TGG | + | chr1_3:63853744-63853763 | None:intergenic | 40.0% |
| !! | CAGACCCTAAAGATTTTTGG+TGG | + | chr1_3:63853748-63853767 | None:intergenic | 40.0% |
| !! | CACCAAAAATCTTTAGGGTC+TGG | - | chr1_3:63853746-63853765 | Msa0132630:intron | 40.0% |
| ! | GTTGGTTCAAGTTCAACAGA+GGG | - | chr1_3:63853772-63853791 | Msa0132630:intron | 40.0% |
| ! | TTGGTTCAAGTTCAACAGAG+GGG | - | chr1_3:63853773-63853792 | Msa0132630:intron | 40.0% |
| ! | CCATTTTCCTTTCACGGTTT+GGG | + | chr1_3:63853836-63853855 | None:intergenic | 40.0% |
| ! | ACCATTTTCCTTTCACGGTT+TGG | + | chr1_3:63853837-63853856 | None:intergenic | 40.0% |
| TGGGGCAACAATCCAAATAT+AGG | + | chr1_3:63854133-63854152 | None:intergenic | 40.0% | |
| GTAAATTCTGGCGATCAATG+GGG | + | chr1_3:63854151-63854170 | None:intergenic | 40.0% | |
| CGTAAATTCTGGCGATCAAT+GGG | + | chr1_3:63854152-63854171 | None:intergenic | 40.0% | |
| ATGATTGCCCTGATCAAATC+AGG | + | chr1_3:63854261-63854280 | None:intergenic | 40.0% | |
| AACGATTTAGCAGCTAGACT+GGG | + | chr1_3:63854380-63854399 | None:intergenic | 40.0% | |
| AAACGATTTAGCAGCTAGAC+TGG | + | chr1_3:63854381-63854400 | None:intergenic | 40.0% | |
| AACATCCCATAACAGTACCT+CGG | - | chr1_3:63854410-63854429 | Msa0132630:intron | 40.0% | |
| ATCTCGAGTATCAGAAGTAG+AGG | + | chr1_3:63854436-63854455 | None:intergenic | 40.0% | |
| GTGCAAGCATGAATGAACAT+GGG | + | chr1_3:63854498-63854517 | None:intergenic | 40.0% | |
| AGTGCAAGCATGAATGAACA+TGG | + | chr1_3:63854499-63854518 | None:intergenic | 40.0% | |
| ! | TGAGAACTGACCAGCATTTT+TGG | - | chr1_3:63854562-63854581 | Msa0132630:intron | 40.0% |
| GTCAACAAATACAGGCTTGT+CGG | + | chr1_3:63854656-63854675 | None:intergenic | 40.0% | |
| !! | TTGTTGACTTCTATGCAACC+TGG | - | chr1_3:63854668-63854687 | Msa0132630:CDS | 40.0% |
| AAGAAAATGGAAAACGCACG+GGG | + | chr1_3:63854703-63854722 | None:intergenic | 40.0% | |
| GAAGAAAATGGAAAACGCAC+GGG | + | chr1_3:63854704-63854723 | None:intergenic | 40.0% | |
| TCTAATCAGTAACCCAATGC+TGG | - | chr1_3:63854824-63854843 | Msa0132630:intron | 40.0% | |
| !! | GTAACCCAATGCTGGTTTAT+AGG | - | chr1_3:63854832-63854851 | Msa0132630:intron | 40.0% |
| CACACCTATAAACCAGCATT+GGG | + | chr1_3:63854839-63854858 | None:intergenic | 40.0% | |
| CCAACTTACAAAGCGATCAA+AGG | + | chr1_3:63855021-63855040 | None:intergenic | 40.0% | |
| CCTTTGATCGCTTTGTAAGT+TGG | - | chr1_3:63855018-63855037 | Msa0132630:intron | 40.0% | |
| CACCTTTACAGACACTACTA+AGG | - | chr1_3:63855487-63855506 | Msa0132630:intron | 40.0% | |
| AGCCTTAGTAGTGTCTGTAA+AGG | + | chr1_3:63855492-63855511 | None:intergenic | 40.0% | |
| GAAGATAGCTTGACATAGTC+TGG | - | chr1_3:63855679-63855698 | Msa0132630:intron | 40.0% | |
| !! | TGGTCTTCATGATTTTCAGG+AGG | - | chr1_3:63856007-63856026 | Msa0132630:intron | 40.0% |
| !! | GGTCTTCATGATTTTCAGGA+GGG | - | chr1_3:63856008-63856027 | Msa0132630:intron | 40.0% |
| ! | ATTTAGAGGGCAGGGATTTT+TGG | + | chr1_3:63856190-63856209 | None:intergenic | 40.0% |
| AGACACAGGAGTTTGTCAAT+CGG | - | chr1_3:63856237-63856256 | Msa0132630:intron | 40.0% | |
| GAGTTTGTCAATCGGAATGT+TGG | - | chr1_3:63856245-63856264 | Msa0132630:intron | 40.0% | |
| GAATGTTGGGATCACATACA+TGG | - | chr1_3:63856259-63856278 | Msa0132630:intron | 40.0% | |
| GATCACATACATGGTTGGAT+AGG | - | chr1_3:63856268-63856287 | Msa0132630:intron | 40.0% | |
| AGTTGCAACTGTACGAAAGT+TGG | - | chr1_3:63856522-63856541 | Msa0132630:five_prime_UTR | 40.0% | |
| AAAAGTCCAGACAGAGCAGT+TGG | - | chr1_3:63853024-63853043 | Msa0132630:three_prime_UTR | 45.0% | |
| AGAAAACCAACTGCTCTGTC+TGG | + | chr1_3:63853033-63853052 | None:intergenic | 45.0% | |
| !!! | GACAGAGCAGTTGGTTTTCT+TGG | - | chr1_3:63853033-63853052 | Msa0132630:three_prime_UTR | 45.0% |
| !!! | CACGGACTAGGCTTTTGTTT+TGG | - | chr1_3:63853658-63853677 | Msa0132630:intron | 45.0% |
| !! | ATCTTTAGGGTCTGGTTGGT+TGG | - | chr1_3:63853754-63853773 | Msa0132630:intron | 45.0% |
| ! | GGTTGGTTCAAGTTCAACAG+AGG | - | chr1_3:63853771-63853790 | Msa0132630:intron | 45.0% |
| CCCAAACCGTGAAAGGAAAA+TGG | - | chr1_3:63853833-63853852 | Msa0132630:intron | 45.0% | |
| AATCACGATCCTTGATGCTG+TGG | - | chr1_3:63853931-63853950 | Msa0132630:intron | 45.0% | |
| CATGATTCTCCACAGCATCA+AGG | + | chr1_3:63853943-63853962 | None:intergenic | 45.0% | |
| CTTGATGCTGTGGAGAATCA+TGG | - | chr1_3:63853941-63853960 | Msa0132630:intron | 45.0% | |
| TGGAGAATCATGGTCAAACG+CGG | - | chr1_3:63853951-63853970 | Msa0132630:intron | 45.0% | |
| GCGTAAATTCTGGCGATCAA+TGG | + | chr1_3:63854153-63854172 | None:intergenic | 45.0% | |
| TAATTCGATGTTGACGCTGC+TGG | + | chr1_3:63854235-63854254 | None:intergenic | 45.0% | |
| !! | ATCGTGAAGCGGATTTTGTG+CGG | + | chr1_3:63854336-63854355 | None:intergenic | 45.0% |
| GCGTCATGTTTATCGTGAAG+CGG | + | chr1_3:63854347-63854366 | None:intergenic | 45.0% | |
| !! | GAGGTACTGTTATGGGATGT+TGG | + | chr1_3:63854411-63854430 | None:intergenic | 45.0% |
| CCACACCTATAAACCAGCAT+TGG | + | chr1_3:63854840-63854859 | None:intergenic | 45.0% | |
| !! | CCAATGCTGGTTTATAGGTG+TGG | - | chr1_3:63854837-63854856 | Msa0132630:intron | 45.0% |
| ACAGGAACCATGAACTGACA+AGG | + | chr1_3:63854864-63854883 | None:intergenic | 45.0% | |
| GTTCATGGTTCCTGTACTTG+AGG | - | chr1_3:63854869-63854888 | Msa0132630:intron | 45.0% | |
| ATAGTCTGGACTCTGGTGTT+TGG | - | chr1_3:63855693-63855712 | Msa0132630:intron | 45.0% | |
| CAATGTAGGCTCACAATGCT+TGG | + | chr1_3:63855901-63855920 | None:intergenic | 45.0% | |
| ! | AGCAAGGTATTTAGAGGGCA+GGG | + | chr1_3:63856198-63856217 | None:intergenic | 45.0% |
| ! | TAGCAAGGTATTTAGAGGGC+AGG | + | chr1_3:63856199-63856218 | None:intergenic | 45.0% |
| GTTGGGATCACATACATGGT+TGG | - | chr1_3:63856263-63856282 | Msa0132630:intron | 45.0% | |
| CACATACATGGTTGGATAGG+AGG | - | chr1_3:63856271-63856290 | Msa0132630:intron | 45.0% | |
| CTGTGGTCAGGTTCAATTTG+TGG | + | chr1_3:63856569-63856588 | None:intergenic | 45.0% | |
| CACAAATTGAACCTGACCAC+AGG | - | chr1_3:63856567-63856586 | Msa0132630:five_prime_UTR | 45.0% | |
| AGACGCTGCTGATATGGAAG+CGG | + | chr1_3:63853164-63853183 | None:intergenic | 50.0% | |
| AGAGGAAGACGCTGCTGATA+TGG | + | chr1_3:63853170-63853189 | None:intergenic | 50.0% | |
| !! | TGATGAAGGTACCAGACGTG+TGG | + | chr1_3:63853224-63853243 | None:intergenic | 50.0% |
| GGCGAGCAGTTCGAAATTGA+AGG | + | chr1_3:63853264-63853283 | None:intergenic | 50.0% | |
| ACTGCTCGCCTTCTTCCAAT+TGG | - | chr1_3:63853274-63853293 | Msa0132630:three_prime_UTR | 50.0% | |
| GGCGAGTACCAATTGGAAGA+AGG | + | chr1_3:63853285-63853304 | None:intergenic | 50.0% | |
| GAAAGACGGCGAGTACCAAT+TGG | + | chr1_3:63853292-63853311 | None:intergenic | 50.0% | |
| CGAGAGGAAGTAGGAAACGA+GGG | + | chr1_3:63853327-63853346 | None:intergenic | 50.0% | |
| ACGAGAGGAAGTAGGAAACG+AGG | + | chr1_3:63853328-63853347 | None:intergenic | 50.0% | |
| TCAACAGAGGGGAGCGAAAA+TGG | - | chr1_3:63853784-63853803 | Msa0132630:intron | 50.0% | |
| CAACAGAGGGGAGCGAAAAT+GGG | - | chr1_3:63853785-63853804 | Msa0132630:intron | 50.0% | |
| ! | AGGGGAGCGAAAATGGGTTT+AGG | - | chr1_3:63853791-63853810 | Msa0132630:intron | 50.0% |
| ! | GGGGAGCGAAAATGGGTTTA+GGG | - | chr1_3:63853792-63853811 | Msa0132630:intron | 50.0% |
| ! | GGGAGCGAAAATGGGTTTAG+GGG | - | chr1_3:63853793-63853812 | Msa0132630:intron | 50.0% |
| ! | GGAGCGAAAATGGGTTTAGG+GGG | - | chr1_3:63853794-63853813 | Msa0132630:intron | 50.0% |
| ! | TTTCACGGTTTGGGTAGAGG+GGG | + | chr1_3:63853827-63853846 | None:intergenic | 50.0% |
| ! | CTTTCACGGTTTGGGTAGAG+GGG | + | chr1_3:63853828-63853847 | None:intergenic | 50.0% |
| ! | CCTTTCACGGTTTGGGTAGA+GGG | + | chr1_3:63853829-63853848 | None:intergenic | 50.0% |
| ! | TCCTTTCACGGTTTGGGTAG+AGG | + | chr1_3:63853830-63853849 | None:intergenic | 50.0% |
| TTCTGCACCAATCCCCATCA+TGG | - | chr1_3:63854300-63854319 | Msa0132630:intron | 50.0% | |
| ! | GTCTTTGCCATGATGGGGAT+TGG | + | chr1_3:63854310-63854329 | None:intergenic | 50.0% |
| GGATGGTCTTTGCCATGATG+GGG | + | chr1_3:63854315-63854334 | None:intergenic | 50.0% | |
| CGGATGGTCTTTGCCATGAT+GGG | + | chr1_3:63854316-63854335 | None:intergenic | 50.0% | |
| !! | TGAAGCGGATTTTGTGCGGA+TGG | + | chr1_3:63854332-63854351 | None:intergenic | 50.0% |
| !! | AGAGGCCGAGGTACTGTTAT+GGG | + | chr1_3:63854418-63854437 | None:intergenic | 50.0% |
| !! | TAGAGGCCGAGGTACTGTTA+TGG | + | chr1_3:63854419-63854438 | None:intergenic | 50.0% |
| AGTATCAGAAGTAGAGGCCG+AGG | + | chr1_3:63854430-63854449 | None:intergenic | 50.0% | |
| GTGTGGTCCTTGTCAGTTCA+TGG | - | chr1_3:63854854-63854873 | Msa0132630:intron | 50.0% | |
| TACTTGAGGAAGTGAGCGCT+CGG | - | chr1_3:63854883-63854902 | Msa0132630:intron | 50.0% | |
| GCTTGACATAGTCTGGACTC+TGG | - | chr1_3:63855686-63855705 | Msa0132630:intron | 50.0% | |
| !! | GGCAGGGATTTTTGGAGAGA+TGG | + | chr1_3:63856182-63856201 | None:intergenic | 50.0% |
| AGACATAAGCACCTGTGGTC+AGG | + | chr1_3:63856581-63856600 | None:intergenic | 50.0% | |
| GACCACAGGTGCTTATGTCT+TGG | - | chr1_3:63856581-63856600 | Msa0132630:five_prime_UTR | 50.0% | |
| TGCCAAGACATAAGCACCTG+TGG | + | chr1_3:63856586-63856605 | None:intergenic | 50.0% | |
| TGCTGATATGGAAGCGGCCA+TGG | + | chr1_3:63853158-63853177 | None:intergenic | 55.0% | |
| CTCTTCTTCGTCCACACGTC+TGG | - | chr1_3:63853210-63853229 | Msa0132630:three_prime_UTR | 55.0% | |
| AGGAAGTAGGAAACGAGGGC+GGG | + | chr1_3:63853323-63853342 | None:intergenic | 55.0% | |
| GAGGAAGTAGGAAACGAGGG+CGG | + | chr1_3:63853324-63853343 | None:intergenic | 55.0% | |
| CCCTCTACCCAAACCGTGAA+AGG | - | chr1_3:63853826-63853845 | Msa0132630:intron | 55.0% | |
| GCGGATGGTCTTTGCCATGA+TGG | + | chr1_3:63854317-63854336 | None:intergenic | 55.0% | |
| GCGCTCACTTCCTCAAGTAC+AGG | + | chr1_3:63854882-63854901 | None:intergenic | 55.0% | |
| GGCGGGAGGAAGAGGAAAGA+CGG | + | chr1_3:63853306-63853325 | None:intergenic | 60.0% | |
| AAGTAGGAAACGAGGGCGGG+AGG | + | chr1_3:63853320-63853339 | None:intergenic | 60.0% | |
| CGCACGGGGAGAAAGTTACC+AGG | + | chr1_3:63854689-63854708 | None:intergenic | 60.0% | |
| GAAACGAGGGCGGGAGGAAG+AGG | + | chr1_3:63853314-63853333 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 63853009 | 63856627 | 63853009 | ID=Msa0132630;Name=Msa0132630 |
| chr1_3 | mRNA | 63853009 | 63856627 | 63853009 | ID=Msa0132630-mRNA-1;Parent=Msa0132630;Name=Msa0132630-mRNA-1;_AED=0.00;_eAED=0.00;_QI=148|1|1|1|0.75|0.6|5|404|173 |
| chr1_3 | exon | 63853009 | 63853407 | 63853009 | ID=Msa0132630-mRNA-1:exon:21354;Parent=Msa0132630-mRNA-1 |
| chr1_3 | exon | 63853540 | 63853610 | 63853540 | ID=Msa0132630-mRNA-1:exon:21353;Parent=Msa0132630-mRNA-1 |
| chr1_3 | exon | 63854605 | 63854782 | 63854605 | ID=Msa0132630-mRNA-1:exon:21352;Parent=Msa0132630-mRNA-1 |
| chr1_3 | exon | 63854947 | 63855035 | 63854947 | ID=Msa0132630-mRNA-1:exon:21351;Parent=Msa0132630-mRNA-1 |
| chr1_3 | exon | 63856291 | 63856627 | 63856291 | ID=Msa0132630-mRNA-1:exon:21350;Parent=Msa0132630-mRNA-1 |
| chr1_3 | five_prime_UTR | 63856480 | 63856627 | 63856480 | ID=Msa0132630-mRNA-1:five_prime_utr;Parent=Msa0132630-mRNA-1 |
| chr1_3 | CDS | 63856291 | 63856479 | 63856291 | ID=Msa0132630-mRNA-1:cds;Parent=Msa0132630-mRNA-1 |
| chr1_3 | CDS | 63854947 | 63855035 | 63854947 | ID=Msa0132630-mRNA-1:cds;Parent=Msa0132630-mRNA-1 |
| chr1_3 | CDS | 63854605 | 63854782 | 63854605 | ID=Msa0132630-mRNA-1:cds;Parent=Msa0132630-mRNA-1 |
| chr1_3 | CDS | 63853545 | 63853610 | 63853545 | ID=Msa0132630-mRNA-1:cds;Parent=Msa0132630-mRNA-1 |
| chr1_3 | three_prime_UTR | 63853540 | 63853544 | 63853540 | ID=Msa0132630-mRNA-1:three_prime_utr;Parent=Msa0132630-mRNA-1 |
| chr1_3 | three_prime_UTR | 63853009 | 63853407 | 63853009 | ID=Msa0132630-mRNA-1:three_prime_utr;Parent=Msa0132630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
