AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0222660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0222660 MtrunA17_Chr2g0327721 96.795 468 13 2 1 466 13 480 0.0 936
Msa0222660 MtrunA17_Chr4g0030601 71.335 457 120 3 1 456 13 459 0.0 707
Msa0222660 MtrunA17_Chr4g0030581 72.570 463 122 3 1 462 13 471 0.0 703
Msa0222660 MtrunA17_Chr4g0030591 70.259 464 132 3 1 462 13 472 0.0 686
Msa0222660 MtrunA17_Chr1g0212951 54.566 449 184 5 13 447 26 468 0.0 516
Msa0222660 MtrunA17_Chr7g0276251 44.186 430 221 6 14 436 117 534 1.53e-123 370
Msa0222660 MtrunA17_Chr1g0188051 41.379 435 233 8 3 432 88 505 2.05e-109 333
Msa0222660 MtrunA17_Chr1g0209881 40.553 434 238 7 3 432 72 489 2.96e-109 332
Msa0222660 MtrunA17_Chr5g0423521 41.055 436 234 7 4 432 70 489 5.47e-109 332
Msa0222660 MtrunA17_Chr4g0035081 40.000 420 232 5 15 430 96 499 5.38e-108 329
Msa0222660 MtrunA17_Chr3g0136561 39.813 427 234 5 15 430 486 900 1.08e-105 334
Msa0222660 MtrunA17_Chr4g0063011 38.584 438 228 5 15 448 87 487 4.78e-105 322
Msa0222660 MtrunA17_Chr1g0166191 39.007 423 237 4 15 432 105 511 1.54e-104 321
Msa0222660 MtrunA17_Chr2g0306781 41.689 379 200 4 57 430 34 396 7.18e-99 302
Msa0222660 MtrunA17_Chr2g0277841 39.808 417 237 4 15 430 45 448 3.91e-96 297
Msa0222660 MtrunA17_Chr6g0480561 38.955 421 227 10 20 430 65 465 2.48e-94 293
Msa0222660 MtrunA17_Chr2g0295781 36.967 422 251 5 11 430 40 448 1.47e-91 285
Msa0222660 MtrunA17_Chr7g0276241 44.333 300 148 4 136 432 2 285 8.07e-89 273
Msa0222660 MtrunA17_Chr2g0282281 35.784 408 243 4 17 422 110 500 5.11e-88 278
Msa0222660 MtrunA17_Chr1g0204301 37.647 425 237 8 15 430 78 483 1.47e-85 271
Msa0222660 MtrunA17_Chr7g0250661 42.667 300 152 3 136 430 2 286 7.11e-83 257
Msa0222660 MtrunA17_Chr3g0115021 37.055 421 234 8 20 430 83 482 4.42e-82 261
Msa0222660 MtrunA17_Chr3g0115041 37.055 421 234 8 20 430 83 482 5.02e-82 261
Msa0222660 MtrunA17_Chr6g0469631 37.589 423 229 8 20 430 82 481 5.96e-78 251
Msa0222660 MtrunA17_Chr6g0461631 39.474 266 141 3 170 430 3 253 2.14e-61 201
Msa0222660 MtrunA17_Chr4g0026871 41.841 239 118 4 198 430 1 224 6.74e-57 188
Msa0222660 MtrunA17_Chr4g0026791 43.523 193 91 3 198 386 1 179 5.58e-44 152
Msa0222660 MtrunA17_Chr4g0026721 37.870 169 85 3 267 430 3 156 2.35e-32 120
Msa0222660 MtrunA17_Chr4g0026861 31.056 161 110 1 11 171 54 213 3.72e-22 94.4
Msa0222660 MtrunA17_Chr6g0461621 32.222 180 114 5 6 182 55 229 9.05e-21 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0222660 AT2G28630.2 66.300 454 148 3 7 456 19 471 0.0 636
Msa0222660 AT2G28630.1 66.300 454 148 3 7 456 19 471 0.0 636
Msa0222660 AT1G07720.2 65.310 467 143 4 2 456 57 516 0.0 631
Msa0222660 AT1G07720.1 65.310 467 143 4 2 456 14 473 0.0 630
Msa0222660 AT5G04530.1 53.244 447 196 5 5 447 18 455 2.37e-179 510
Msa0222660 AT1G01120.1 43.192 426 212 6 15 430 118 523 4.72e-123 369
Msa0222660 AT2G46720.1 38.940 434 248 6 3 432 44 464 1.02e-111 338
Msa0222660 AT4G34510.1 41.080 426 228 5 11 430 74 482 2.03e-110 335
Msa0222660 AT1G25450.1 41.435 432 233 7 3 430 68 483 3.36e-109 332
Msa0222660 AT4G34520.1 39.723 433 226 6 15 430 73 487 3.70e-108 330
Msa0222660 AT2G15090.1 38.182 440 248 7 1 430 51 476 3.38e-107 327
Msa0222660 AT2G16280.1 40.000 425 225 6 15 430 104 507 6.75e-107 327
Msa0222660 AT1G19440.1 38.353 425 232 6 15 430 108 511 3.58e-106 325
Msa0222660 AT5G43760.1 40.749 427 226 7 15 430 107 517 2.51e-105 323
Msa0222660 AT4G34250.1 38.426 432 228 6 15 430 75 484 3.27e-105 322
Msa0222660 AT2G26640.1 40.411 438 233 8 1 430 83 500 4.17e-105 322
Msa0222660 AT3G10280.1 37.182 433 250 5 3 432 44 457 5.37e-105 320
Msa0222660 AT1G68530.1 40.573 419 231 7 15 430 85 488 1.14e-104 321
Msa0222660 AT1G04220.1 38.864 440 240 8 3 430 90 512 2.62e-103 318
Msa0222660 AT2G26250.1 35.780 436 255 5 15 430 117 547 2.33e-98 306
Msa0222660 AT5G49070.1 37.176 425 255 4 6 430 40 452 6.32e-95 295
Msa0222660 AT1G71160.1 36.740 411 247 3 20 430 48 445 6.34e-92 286
Msa0222660 AT3G52160.1 31.796 412 236 4 4 414 73 440 3.25e-75 243
Msa0222660 AT3G52160.2 34.270 356 189 4 60 414 16 327 2.83e-71 229
Msa0222660 AT1G68530.2 38.007 271 161 3 15 282 85 351 5.95e-58 196
Msa0222660 AT5G49070.2 31.183 279 189 2 3 281 37 312 1.90e-40 147

Find 75 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAATGCAACAGTTGTTAT+TGG 0.230294 2_1:-71962712 Msa0222660:CDS
CTTAGTACAAATTGGTATTC+AGG 0.248106 2_1:-71963358 Msa0222660:CDS
AAAGCTCTTGTAGCTGCTTT+TGG 0.259427 2_1:+71963121 None:intergenic
TACCAGCTAGGGAAATATTT+AGG 0.265669 2_1:-71963063 Msa0222660:CDS
ATGACATTCTTGCTGGTTCT+AGG 0.278483 2_1:+71962852 None:intergenic
CGGCCTTCGATGAAGTTTCT+TGG 0.294675 2_1:+71963694 None:intergenic
GTGGTATGTGTTGGGGTATA+TGG 0.299234 2_1:-71962795 Msa0222660:CDS
GAACAATGTGGCAAGATTAT+AGG 0.312551 2_1:-71963802 Msa0222660:CDS
TTACTATCCACCACACTCTT+TGG 0.331528 2_1:-71962633 Msa0222660:CDS
CCATCGTTGGGTTCACAGTT+CGG 0.347303 2_1:+71963674 None:intergenic
TCCACTTCGTCTTCCATCGT+TGG 0.351430 2_1:+71963661 None:intergenic
CAGAGTCTCTTAGTACAAAT+TGG 0.351617 2_1:-71963366 Msa0222660:CDS
ATAAAAGCTTATAACCTATC+TGG 0.357029 2_1:-71963478 Msa0222660:CDS
AGAATGTCATTACATAGATT+TGG 0.358478 2_1:-71962839 Msa0222660:CDS
TGCACTTGTGTTTCCTGATC+TGG 0.359947 2_1:-71963912 Msa0222660:CDS
TAAATGCAACAGTTGTTATT+GGG 0.360260 2_1:-71962711 Msa0222660:CDS
AGTTTGAGTTTGAAAGTGTT+TGG 0.363208 2_1:+71962563 None:intergenic
CTCTTTGGCCAACCCATTCA+TGG 0.371696 2_1:-71962618 Msa0222660:CDS
CTATGTAATGACATTCTTGC+TGG 0.374650 2_1:+71962845 None:intergenic
AAAGCAGTGATAGATGGAAT+TGG 0.380405 2_1:-71962902 Msa0222660:CDS
CCACTTCGTCTTCCATCGTT+GGG 0.388821 2_1:+71963662 None:intergenic
CAACCGTACTTCTCCATGAA+TGG 0.401060 2_1:+71962605 None:intergenic
GGAAGACGAAGTGGAGGAAA+TGG 0.412780 2_1:-71963653 Msa0222660:CDS
CCAAGTGATGAAAGAAAACT+TGG 0.421127 2_1:-71963829 Msa0222660:CDS
AGCTTATAACCTATCTGGTA+TGG 0.425685 2_1:-71963473 Msa0222660:CDS
GCAAAGCTTCTAAACAAATC+AGG 0.429501 2_1:-71963607 Msa0222660:CDS
ATAGGAAACAATGAGAATAT+TGG 0.429933 2_1:-71963784 Msa0222660:CDS
CTGAGTTGACAACGGCTTTG+AGG 0.431728 2_1:+71963740 None:intergenic
ATTGGTATTCAGGAAACAAT+AGG 0.432471 2_1:-71963348 Msa0222660:CDS
AAGCAGTGATAGATGGAATT+GGG 0.433566 2_1:-71962901 Msa0222660:CDS
AAGTCAGCTGCAAGATGGTT+TGG 0.438277 2_1:-71962992 Msa0222660:CDS
GGAGGAAAAGCAGTGATAGA+TGG 0.443045 2_1:-71962908 Msa0222660:CDS
AGAGTATTGATGATAAGTTT+AGG 0.443493 2_1:-71962743 Msa0222660:CDS
ATGATTCTTGAAGTTAAAGA+AGG 0.444901 2_1:+71963526 None:intergenic
TACCTAAATATTTCCCTAGC+TGG 0.449686 2_1:+71963061 None:intergenic
AGTAGTTTGTGGTATGTGTT+GGG 0.450299 2_1:-71962803 Msa0222660:CDS
CAAATCAGGCATTTCACCTT+CGG 0.453132 2_1:-71963593 Msa0222660:CDS
AGAGATGTTGTTGGTGATGA+TGG 0.459031 2_1:-71962680 Msa0222660:CDS
TCACCAGTGAATTTCAAAAC+AGG 0.477090 2_1:-71962956 Msa0222660:CDS
CTCAAAGCCGTTGTCAACTC+AGG 0.488420 2_1:-71963739 Msa0222660:CDS
AACCGTACTTCTCCATGAAT+GGG 0.497250 2_1:+71962606 None:intergenic
GAAGATGAACAAGGTAAACT+TGG 0.499726 2_1:-71963166 Msa0222660:CDS
AACCATCTTGCAGCTGACTT+AGG 0.502261 2_1:+71962995 None:intergenic
AGTTTAATATGTAACACTCT+TGG 0.508115 2_1:+71963866 None:intergenic
CTCCTAAGTCAGCTGCAAGA+TGG 0.509644 2_1:-71962997 Msa0222660:CDS
TTGATGATAAGTTTAGGTGC+TGG 0.511949 2_1:-71962737 Msa0222660:CDS
AAGTAGTTTGTGGTATGTGT+TGG 0.515984 2_1:-71962804 Msa0222660:CDS
GCCGTTGTCAACTCAGGCAT+TGG 0.520687 2_1:-71963733 Msa0222660:CDS
GAAGTAATGAGAGATGTTGT+TGG 0.523138 2_1:-71962689 Msa0222660:CDS
CACTACAACCCATACCAGAT+AGG 0.541455 2_1:+71963464 None:intergenic
GCTTATAACCTATCTGGTAT+GGG 0.546638 2_1:-71963472 Msa0222660:CDS
ATACATCAGCAAGTAGTTTG+TGG 0.556511 2_1:-71962814 Msa0222660:CDS
GAATTGCACAACCGCCGGTA+CGG 0.562704 2_1:+71963299 None:intergenic
TTCGGAGATCGATATTCTTG+TGG 0.562977 2_1:-71963575 Msa0222660:CDS
CATTCATGGAGAAGTACGGT+TGG 0.595870 2_1:-71962604 Msa0222660:CDS
TGTCTAGTTAGAACTCATCA+TGG 0.608151 2_1:-71963226 Msa0222660:CDS
AACCCATTCATGGAGAAGTA+CGG 0.611169 2_1:-71962608 Msa0222660:CDS
GTACTTCTCCATGAATGGGT+TGG 0.611489 2_1:+71962610 None:intergenic
AACGATGGAAGACGAAGTGG+AGG 0.619961 2_1:-71963659 Msa0222660:CDS
GGTATATGGAAGCTAAGAAG+AGG 0.621077 2_1:-71962781 Msa0222660:CDS
TACGGAAAAGACAATTTGCA+AGG 0.623230 2_1:+71963317 None:intergenic
CCCAACGATGGAAGACGAAG+TGG 0.624451 2_1:-71963662 Msa0222660:CDS
TGGTGATGATGGAAATGTGT+GGG 0.626310 2_1:-71962669 Msa0222660:CDS
GCTCCAAGAAACTTCATCGA+AGG 0.628524 2_1:-71963697 Msa0222660:CDS
GAGAAGAATTGCACAACCGC+CGG 0.629617 2_1:+71963294 None:intergenic
GTAGTTTGTGGTATGTGTTG+GGG 0.633510 2_1:-71962802 Msa0222660:CDS
TAACCATTACAAAATGAGAG+AGG 0.653134 2_1:-71963503 Msa0222660:CDS
TGTCAACTCAGGCATTGGTG+AGG 0.663337 2_1:-71963728 Msa0222660:CDS
CCGAACTGTGAACCCAACGA+TGG 0.667415 2_1:-71963674 Msa0222660:CDS
ACAAGAATATCGATCTCCGA+AGG 0.671733 2_1:+71963577 None:intergenic
ACCAATGCCTGAGTTGACAA+CGG 0.693257 2_1:+71963732 None:intergenic
AATGGGTTGGCCAAAGAGTG+TGG 0.696430 2_1:+71962623 None:intergenic
TTGGTGATGATGGAAATGTG+TGG 0.702877 2_1:-71962670 Msa0222660:CDS
GGGTTGGCCAAAGAGTGTGG+TGG 0.735704 2_1:+71962626 None:intergenic
AAACTTGGAAGTGAACAATG+TGG 0.743662 2_1:-71963814 Msa0222660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGCTTTTACTGATAATTTAA+GGG - chr2_1:71963344-71963363 Msa0222660:CDS 20.0%
!!! AGCTTTTACTGATAATTTAA+GGG - chr2_1:71963344-71963363 Msa0222660:CDS 20.0%
! GAAAAAATTTGATCAGAGAA+GGG - chr2_1:71962558-71962577 Msa0222660:CDS 25.0%
! AGTTTAATATGTAACACTCT+TGG + chr2_1:71962585-71962604 None:intergenic 25.0%
! ATAGGAAACAATGAGAATAT+TGG - chr2_1:71962664-71962683 Msa0222660:CDS 25.0%
! ATGATTCTTGAAGTTAAAGA+AGG + chr2_1:71962925-71962944 None:intergenic 25.0%
! ATAAAAGCTTATAACCTATC+TGG - chr2_1:71962970-71962989 Msa0222660:CDS 25.0%
!! GAGCTTTTACTGATAATTTA+AGG - chr2_1:71963343-71963362 Msa0222660:CDS 25.0%
! AGAATGTCATTACATAGATT+TGG - chr2_1:71963609-71963628 Msa0222660:CDS 25.0%
!!! AGAGTATTGATGATAAGTTT+AGG - chr2_1:71963705-71963724 Msa0222660:CDS 25.0%
! TTAAATGCAACAGTTGTTAT+TGG - chr2_1:71963736-71963755 Msa0222660:CDS 25.0%
!! TAAATGCAACAGTTGTTATT+GGG - chr2_1:71963737-71963756 Msa0222660:CDS 25.0%
! GAAAAAATTTGATCAGAGAA+GGG - chr2_1:71962558-71962577 Msa0222660:CDS 25.0%
! AGTTTAATATGTAACACTCT+TGG + chr2_1:71962585-71962604 None:intergenic 25.0%
! ATAGGAAACAATGAGAATAT+TGG - chr2_1:71962664-71962683 Msa0222660:CDS 25.0%
! ATGATTCTTGAAGTTAAAGA+AGG + chr2_1:71962925-71962944 None:intergenic 25.0%
! ATAAAAGCTTATAACCTATC+TGG - chr2_1:71962970-71962989 Msa0222660:CDS 25.0%
!! GAGCTTTTACTGATAATTTA+AGG - chr2_1:71963343-71963362 Msa0222660:CDS 25.0%
! AGAATGTCATTACATAGATT+TGG - chr2_1:71963609-71963628 Msa0222660:CDS 25.0%
!!! AGAGTATTGATGATAAGTTT+AGG - chr2_1:71963705-71963724 Msa0222660:CDS 25.0%
! TTAAATGCAACAGTTGTTAT+TGG - chr2_1:71963736-71963755 Msa0222660:CDS 25.0%
!! TAAATGCAACAGTTGTTATT+GGG - chr2_1:71963737-71963756 Msa0222660:CDS 25.0%
!!! GATCAAATTTTTTCCAGATC+AGG + chr2_1:71962552-71962571 None:intergenic 30.0%
GGAAAAAATTTGATCAGAGA+AGG - chr2_1:71962557-71962576 Msa0222660:CDS 30.0%
TAACCATTACAAAATGAGAG+AGG - chr2_1:71962945-71962964 Msa0222660:CDS 30.0%
! TATCCTCTCTCATTTTGTAA+TGG + chr2_1:71962951-71962970 None:intergenic 30.0%
CTTAGTACAAATTGGTATTC+AGG - chr2_1:71963090-71963109 Msa0222660:CDS 30.0%
ATTGGTATTCAGGAAACAAT+AGG - chr2_1:71963100-71963119 Msa0222660:CDS 30.0%
!!! CAGTATAGCTTTGTGTTTTA+AGG + chr2_1:71963193-71963212 None:intergenic 30.0%
AGTCAAAAAGAAGATGAACA+AGG - chr2_1:71963273-71963292 Msa0222660:CDS 30.0%
! ACCTAAAATTTTACCAGCTA+GGG - chr2_1:71963374-71963393 Msa0222660:CDS 30.0%
!! AGTTTGAGTTTGAAAGTGTT+TGG + chr2_1:71963888-71963907 None:intergenic 30.0%
!!! GATCAAATTTTTTCCAGATC+AGG + chr2_1:71962552-71962571 None:intergenic 30.0%
GGAAAAAATTTGATCAGAGA+AGG - chr2_1:71962557-71962576 Msa0222660:CDS 30.0%
TAACCATTACAAAATGAGAG+AGG - chr2_1:71962945-71962964 Msa0222660:CDS 30.0%
! TATCCTCTCTCATTTTGTAA+TGG + chr2_1:71962951-71962970 None:intergenic 30.0%
CTTAGTACAAATTGGTATTC+AGG - chr2_1:71963090-71963109 Msa0222660:CDS 30.0%
ATTGGTATTCAGGAAACAAT+AGG - chr2_1:71963100-71963119 Msa0222660:CDS 30.0%
!!! CAGTATAGCTTTGTGTTTTA+AGG + chr2_1:71963193-71963212 None:intergenic 30.0%
AGTCAAAAAGAAGATGAACA+AGG - chr2_1:71963273-71963292 Msa0222660:CDS 30.0%
! ACCTAAAATTTTACCAGCTA+GGG - chr2_1:71963374-71963393 Msa0222660:CDS 30.0%
!! AGTTTGAGTTTGAAAGTGTT+TGG + chr2_1:71963888-71963907 None:intergenic 30.0%
! CCAAGTTTTCTTTCATCACT+TGG + chr2_1:71962622-71962641 None:intergenic 35.0%
CCAAGTGATGAAAGAAAACT+TGG - chr2_1:71962619-71962638 Msa0222660:CDS 35.0%
AAACTTGGAAGTGAACAATG+TGG - chr2_1:71962634-71962653 Msa0222660:CDS 35.0%
GAACAATGTGGCAAGATTAT+AGG - chr2_1:71962646-71962665 Msa0222660:CDS 35.0%
GCAAAGCTTCTAAACAAATC+AGG - chr2_1:71962841-71962860 Msa0222660:CDS 35.0%
AGCTTATAACCTATCTGGTA+TGG - chr2_1:71962975-71962994 Msa0222660:CDS 35.0%
GCTTATAACCTATCTGGTAT+GGG - chr2_1:71962976-71962995 Msa0222660:CDS 35.0%
CAGAGTCTCTTAGTACAAAT+TGG - chr2_1:71963082-71963101 Msa0222660:CDS 35.0%
TACGGAAAAGACAATTTGCA+AGG + chr2_1:71963134-71963153 None:intergenic 35.0%
TGTCTAGTTAGAACTCATCA+TGG - chr2_1:71963222-71963241 Msa0222660:CDS 35.0%
GAAGATGAACAAGGTAAACT+TGG - chr2_1:71963282-71963301 Msa0222660:CDS 35.0%
!! CTTTTGGAAGATCTTTAGCT+AGG + chr2_1:71963314-71963333 None:intergenic 35.0%
! CACCTAAAATTTTACCAGCT+AGG - chr2_1:71963373-71963392 Msa0222660:CDS 35.0%
! TCCCTAGCTGGTAAAATTTT+AGG + chr2_1:71963378-71963397 None:intergenic 35.0%
TACCAGCTAGGGAAATATTT+AGG - chr2_1:71963385-71963404 Msa0222660:CDS 35.0%
TACCTAAATATTTCCCTAGC+TGG + chr2_1:71963390-71963409 None:intergenic 35.0%
TCACCAGTGAATTTCAAAAC+AGG - chr2_1:71963492-71963511 Msa0222660:CDS 35.0%
!!! ACACCTGTTTTGAAATTCAC+TGG + chr2_1:71963498-71963517 None:intergenic 35.0%
! GATCATTTTGTTCTTCACAC+TGG - chr2_1:71963519-71963538 Msa0222660:CDS 35.0%
AAAGCAGTGATAGATGGAAT+TGG - chr2_1:71963546-71963565 Msa0222660:CDS 35.0%
AAGCAGTGATAGATGGAATT+GGG - chr2_1:71963547-71963566 Msa0222660:CDS 35.0%
CTATGTAATGACATTCTTGC+TGG + chr2_1:71963606-71963625 None:intergenic 35.0%
ATACATCAGCAAGTAGTTTG+TGG - chr2_1:71963634-71963653 Msa0222660:CDS 35.0%
! AAGTAGTTTGTGGTATGTGT+TGG - chr2_1:71963644-71963663 Msa0222660:CDS 35.0%
! AGTAGTTTGTGGTATGTGTT+GGG - chr2_1:71963645-71963664 Msa0222660:CDS 35.0%
GCTAAGAAGAGGTTGAAAAA+AGG - chr2_1:71963678-71963697 Msa0222660:CDS 35.0%
! TTGATGATAAGTTTAGGTGC+TGG - chr2_1:71963711-71963730 Msa0222660:CDS 35.0%
GAAGTAATGAGAGATGTTGT+TGG - chr2_1:71963759-71963778 Msa0222660:CDS 35.0%
! CCAAGTTTTCTTTCATCACT+TGG + chr2_1:71962622-71962641 None:intergenic 35.0%
CCAAGTGATGAAAGAAAACT+TGG - chr2_1:71962619-71962638 Msa0222660:CDS 35.0%
AAACTTGGAAGTGAACAATG+TGG - chr2_1:71962634-71962653 Msa0222660:CDS 35.0%
GAACAATGTGGCAAGATTAT+AGG - chr2_1:71962646-71962665 Msa0222660:CDS 35.0%
GCAAAGCTTCTAAACAAATC+AGG - chr2_1:71962841-71962860 Msa0222660:CDS 35.0%
AGCTTATAACCTATCTGGTA+TGG - chr2_1:71962975-71962994 Msa0222660:CDS 35.0%
GCTTATAACCTATCTGGTAT+GGG - chr2_1:71962976-71962995 Msa0222660:CDS 35.0%
CAGAGTCTCTTAGTACAAAT+TGG - chr2_1:71963082-71963101 Msa0222660:CDS 35.0%
TACGGAAAAGACAATTTGCA+AGG + chr2_1:71963134-71963153 None:intergenic 35.0%
TGTCTAGTTAGAACTCATCA+TGG - chr2_1:71963222-71963241 Msa0222660:CDS 35.0%
GAAGATGAACAAGGTAAACT+TGG - chr2_1:71963282-71963301 Msa0222660:CDS 35.0%
!! CTTTTGGAAGATCTTTAGCT+AGG + chr2_1:71963314-71963333 None:intergenic 35.0%
! CACCTAAAATTTTACCAGCT+AGG - chr2_1:71963373-71963392 Msa0222660:CDS 35.0%
! TCCCTAGCTGGTAAAATTTT+AGG + chr2_1:71963378-71963397 None:intergenic 35.0%
TACCAGCTAGGGAAATATTT+AGG - chr2_1:71963385-71963404 Msa0222660:CDS 35.0%
TACCTAAATATTTCCCTAGC+TGG + chr2_1:71963390-71963409 None:intergenic 35.0%
TCACCAGTGAATTTCAAAAC+AGG - chr2_1:71963492-71963511 Msa0222660:CDS 35.0%
!!! ACACCTGTTTTGAAATTCAC+TGG + chr2_1:71963498-71963517 None:intergenic 35.0%
! GATCATTTTGTTCTTCACAC+TGG - chr2_1:71963519-71963538 Msa0222660:CDS 35.0%
AAAGCAGTGATAGATGGAAT+TGG - chr2_1:71963546-71963565 Msa0222660:CDS 35.0%
AAGCAGTGATAGATGGAATT+GGG - chr2_1:71963547-71963566 Msa0222660:CDS 35.0%
CTATGTAATGACATTCTTGC+TGG + chr2_1:71963606-71963625 None:intergenic 35.0%
ATACATCAGCAAGTAGTTTG+TGG - chr2_1:71963634-71963653 Msa0222660:CDS 35.0%
! AAGTAGTTTGTGGTATGTGT+TGG - chr2_1:71963644-71963663 Msa0222660:CDS 35.0%
! AGTAGTTTGTGGTATGTGTT+GGG - chr2_1:71963645-71963664 Msa0222660:CDS 35.0%
GCTAAGAAGAGGTTGAAAAA+AGG - chr2_1:71963678-71963697 Msa0222660:CDS 35.0%
! TTGATGATAAGTTTAGGTGC+TGG - chr2_1:71963711-71963730 Msa0222660:CDS 35.0%
GAAGTAATGAGAGATGTTGT+TGG - chr2_1:71963759-71963778 Msa0222660:CDS 35.0%
CAAATCAGGCATTTCACCTT+CGG - chr2_1:71962855-71962874 Msa0222660:CDS 40.0%
ACAAGAATATCGATCTCCGA+AGG + chr2_1:71962874-71962893 None:intergenic 40.0%
TTCGGAGATCGATATTCTTG+TGG - chr2_1:71962873-71962892 Msa0222660:CDS 40.0%
! GCAAATTGTCTTTTCCGTAC+CGG - chr2_1:71963135-71963154 Msa0222660:CDS 40.0%
!! AAAGCTCTTGTAGCTGCTTT+TGG + chr2_1:71963330-71963349 None:intergenic 40.0%
! CATTTTGTTCTTCACACTGG+AGG - chr2_1:71963522-71963541 Msa0222660:CDS 40.0%
!! ATGACATTCTTGCTGGTTCT+AGG + chr2_1:71963599-71963618 None:intergenic 40.0%
! GTAGTTTGTGGTATGTGTTG+GGG - chr2_1:71963646-71963665 Msa0222660:CDS 40.0%
GGTATATGGAAGCTAAGAAG+AGG - chr2_1:71963667-71963686 Msa0222660:CDS 40.0%
!! AGAGATGTTGTTGGTGATGA+TGG - chr2_1:71963768-71963787 Msa0222660:CDS 40.0%
!! TTGGTGATGATGGAAATGTG+TGG - chr2_1:71963778-71963797 Msa0222660:CDS 40.0%
!! TGGTGATGATGGAAATGTGT+GGG - chr2_1:71963779-71963798 Msa0222660:CDS 40.0%
TTACTATCCACCACACTCTT+TGG - chr2_1:71963815-71963834 Msa0222660:CDS 40.0%
AACCCATTCATGGAGAAGTA+CGG - chr2_1:71963840-71963859 Msa0222660:CDS 40.0%
AACCGTACTTCTCCATGAAT+GGG + chr2_1:71963845-71963864 None:intergenic 40.0%
CAAATCAGGCATTTCACCTT+CGG - chr2_1:71962855-71962874 Msa0222660:CDS 40.0%
ACAAGAATATCGATCTCCGA+AGG + chr2_1:71962874-71962893 None:intergenic 40.0%
TTCGGAGATCGATATTCTTG+TGG - chr2_1:71962873-71962892 Msa0222660:CDS 40.0%
! GCAAATTGTCTTTTCCGTAC+CGG - chr2_1:71963135-71963154 Msa0222660:CDS 40.0%
!! AAAGCTCTTGTAGCTGCTTT+TGG + chr2_1:71963330-71963349 None:intergenic 40.0%
! CATTTTGTTCTTCACACTGG+AGG - chr2_1:71963522-71963541 Msa0222660:CDS 40.0%
!! ATGACATTCTTGCTGGTTCT+AGG + chr2_1:71963599-71963618 None:intergenic 40.0%
! GTAGTTTGTGGTATGTGTTG+GGG - chr2_1:71963646-71963665 Msa0222660:CDS 40.0%
GGTATATGGAAGCTAAGAAG+AGG - chr2_1:71963667-71963686 Msa0222660:CDS 40.0%
!! AGAGATGTTGTTGGTGATGA+TGG - chr2_1:71963768-71963787 Msa0222660:CDS 40.0%
!! TTGGTGATGATGGAAATGTG+TGG - chr2_1:71963778-71963797 Msa0222660:CDS 40.0%
!! TGGTGATGATGGAAATGTGT+GGG - chr2_1:71963779-71963798 Msa0222660:CDS 40.0%
TTACTATCCACCACACTCTT+TGG - chr2_1:71963815-71963834 Msa0222660:CDS 40.0%
AACCCATTCATGGAGAAGTA+CGG - chr2_1:71963840-71963859 Msa0222660:CDS 40.0%
AACCGTACTTCTCCATGAAT+GGG + chr2_1:71963845-71963864 None:intergenic 40.0%
TGCACTTGTGTTTCCTGATC+TGG - chr2_1:71962536-71962555 Msa0222660:CDS 45.0%
! ACCAATGCCTGAGTTGACAA+CGG + chr2_1:71962719-71962738 None:intergenic 45.0%
GCTCCAAGAAACTTCATCGA+AGG - chr2_1:71962751-71962770 Msa0222660:CDS 45.0%
CACTACAACCCATACCAGAT+AGG + chr2_1:71962987-71963006 None:intergenic 45.0%
! AATTGTCTTTTCCGTACCGG+CGG - chr2_1:71963138-71963157 Msa0222660:CDS 45.0%
! AACCATCTTGCAGCTGACTT+AGG + chr2_1:71963456-71963475 None:intergenic 45.0%
AAGTCAGCTGCAAGATGGTT+TGG - chr2_1:71963456-71963475 Msa0222660:CDS 45.0%
GGAGGAAAAGCAGTGATAGA+TGG - chr2_1:71963540-71963559 Msa0222660:CDS 45.0%
GTGGTATGTGTTGGGGTATA+TGG - chr2_1:71963653-71963672 Msa0222660:CDS 45.0%
GTACTTCTCCATGAATGGGT+TGG + chr2_1:71963841-71963860 None:intergenic 45.0%
CAACCGTACTTCTCCATGAA+TGG + chr2_1:71963846-71963865 None:intergenic 45.0%
! CATTCATGGAGAAGTACGGT+TGG - chr2_1:71963844-71963863 Msa0222660:CDS 45.0%
TGCACTTGTGTTTCCTGATC+TGG - chr2_1:71962536-71962555 Msa0222660:CDS 45.0%
! ACCAATGCCTGAGTTGACAA+CGG + chr2_1:71962719-71962738 None:intergenic 45.0%
GCTCCAAGAAACTTCATCGA+AGG - chr2_1:71962751-71962770 Msa0222660:CDS 45.0%
CACTACAACCCATACCAGAT+AGG + chr2_1:71962987-71963006 None:intergenic 45.0%
! AATTGTCTTTTCCGTACCGG+CGG - chr2_1:71963138-71963157 Msa0222660:CDS 45.0%
! AACCATCTTGCAGCTGACTT+AGG + chr2_1:71963456-71963475 None:intergenic 45.0%
AAGTCAGCTGCAAGATGGTT+TGG - chr2_1:71963456-71963475 Msa0222660:CDS 45.0%
GGAGGAAAAGCAGTGATAGA+TGG - chr2_1:71963540-71963559 Msa0222660:CDS 45.0%
GTGGTATGTGTTGGGGTATA+TGG - chr2_1:71963653-71963672 Msa0222660:CDS 45.0%
GTACTTCTCCATGAATGGGT+TGG + chr2_1:71963841-71963860 None:intergenic 45.0%
CAACCGTACTTCTCCATGAA+TGG + chr2_1:71963846-71963865 None:intergenic 45.0%
! CATTCATGGAGAAGTACGGT+TGG - chr2_1:71963844-71963863 Msa0222660:CDS 45.0%
! CTGAGTTGACAACGGCTTTG+AGG + chr2_1:71962711-71962730 None:intergenic 50.0%
CTCAAAGCCGTTGTCAACTC+AGG - chr2_1:71962709-71962728 Msa0222660:CDS 50.0%
!! TGTCAACTCAGGCATTGGTG+AGG - chr2_1:71962720-71962739 Msa0222660:CDS 50.0%
CGGCCTTCGATGAAGTTTCT+TGG + chr2_1:71962757-71962776 None:intergenic 50.0%
CCATCGTTGGGTTCACAGTT+CGG + chr2_1:71962777-71962796 None:intergenic 50.0%
CCACTTCGTCTTCCATCGTT+GGG + chr2_1:71962789-71962808 None:intergenic 50.0%
TCCACTTCGTCTTCCATCGT+TGG + chr2_1:71962790-71962809 None:intergenic 50.0%
AACGATGGAAGACGAAGTGG+AGG - chr2_1:71962789-71962808 Msa0222660:CDS 50.0%
GGAAGACGAAGTGGAGGAAA+TGG - chr2_1:71962795-71962814 Msa0222660:CDS 50.0%
GAGAAGAATTGCACAACCGC+CGG + chr2_1:71963157-71963176 None:intergenic 50.0%
CTCCTAAGTCAGCTGCAAGA+TGG - chr2_1:71963451-71963470 Msa0222660:CDS 50.0%
!! AATGGGTTGGCCAAAGAGTG+TGG + chr2_1:71963828-71963847 None:intergenic 50.0%
CTCTTTGGCCAACCCATTCA+TGG - chr2_1:71963830-71963849 Msa0222660:CDS 50.0%
! CTGAGTTGACAACGGCTTTG+AGG + chr2_1:71962711-71962730 None:intergenic 50.0%
CTCAAAGCCGTTGTCAACTC+AGG - chr2_1:71962709-71962728 Msa0222660:CDS 50.0%
!! TGTCAACTCAGGCATTGGTG+AGG - chr2_1:71962720-71962739 Msa0222660:CDS 50.0%
CGGCCTTCGATGAAGTTTCT+TGG + chr2_1:71962757-71962776 None:intergenic 50.0%
CCATCGTTGGGTTCACAGTT+CGG + chr2_1:71962777-71962796 None:intergenic 50.0%
CCACTTCGTCTTCCATCGTT+GGG + chr2_1:71962789-71962808 None:intergenic 50.0%
TCCACTTCGTCTTCCATCGT+TGG + chr2_1:71962790-71962809 None:intergenic 50.0%
AACGATGGAAGACGAAGTGG+AGG - chr2_1:71962789-71962808 Msa0222660:CDS 50.0%
GGAAGACGAAGTGGAGGAAA+TGG - chr2_1:71962795-71962814 Msa0222660:CDS 50.0%
GAGAAGAATTGCACAACCGC+CGG + chr2_1:71963157-71963176 None:intergenic 50.0%
CTCCTAAGTCAGCTGCAAGA+TGG - chr2_1:71963451-71963470 Msa0222660:CDS 50.0%
!! AATGGGTTGGCCAAAGAGTG+TGG + chr2_1:71963828-71963847 None:intergenic 50.0%
CTCTTTGGCCAACCCATTCA+TGG - chr2_1:71963830-71963849 Msa0222660:CDS 50.0%
GCCGTTGTCAACTCAGGCAT+TGG - chr2_1:71962715-71962734 Msa0222660:CDS 55.0%
CCGAACTGTGAACCCAACGA+TGG - chr2_1:71962774-71962793 Msa0222660:CDS 55.0%
CCCAACGATGGAAGACGAAG+TGG - chr2_1:71962786-71962805 Msa0222660:CDS 55.0%
GAATTGCACAACCGCCGGTA+CGG + chr2_1:71963152-71963171 None:intergenic 55.0%
GCCGTTGTCAACTCAGGCAT+TGG - chr2_1:71962715-71962734 Msa0222660:CDS 55.0%
CCGAACTGTGAACCCAACGA+TGG - chr2_1:71962774-71962793 Msa0222660:CDS 55.0%
CCCAACGATGGAAGACGAAG+TGG - chr2_1:71962786-71962805 Msa0222660:CDS 55.0%
GAATTGCACAACCGCCGGTA+CGG + chr2_1:71963152-71963171 None:intergenic 55.0%
!! GGGTTGGCCAAAGAGTGTGG+TGG + chr2_1:71963825-71963844 None:intergenic 60.0%
!! GGGTTGGCCAAAGAGTGTGG+TGG + chr2_1:71963825-71963844 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 71962535 71963935 71962535 ID=Msa0222660;Name=Msa0222660
chr2_1 mRNA 71962535 71963935 71962535 ID=Msa0222660-mRNA-1;Parent=Msa0222660;Name=Msa0222660-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|-1|0|1|-1|1|1|0|466
chr2_1 exon 71962535 71963935 71962535 ID=Msa0222660-mRNA-1:exon:20758;Parent=Msa0222660-mRNA-1
chr2_1 CDS 71962535 71963935 71962535 ID=Msa0222660-mRNA-1:cds;Parent=Msa0222660-mRNA-1
Gene Sequence

>Msa0222660

ATGCACTTGTGTTTCCTGATCTGGAAAAAATTTGATCAGAGAAGGGACCAAGAGTGTTACATATTAAACTATCAATGTTACAAGCCAAGTGATGAAAGAAAACTTGGAAGTGAACAATGTGGCAAGATTATAGGAAACAATGAGAATATTGGTCTTGATGAGTGCAAGTTCTTCCTCAAAGCCGTTGTCAACTCAGGCATTGGTGAGGAAACTTATGCTCCAAGAAACTTCATCGAAGGCCGAACTGTGAACCCAACGATGGAAGACGAAGTGGAGGAAATGGAAGAGTTTTGTAATGATAGCATTGCAAAGCTTCTAAACAAATCAGGCATTTCACCTTCGGAGATCGATATTCTTGTGGTAAATGTATCTTTATTCTCTTCTGTGCCTTCTTTAACTTCAAGAATCATTAACCATTACAAAATGAGAGAGGATATAAAAGCTTATAACCTATCTGGTATGGGTTGTAGTGCTAGTCTAATCTCATTAGACGTTATTCAAAACATTTTCAAGTCACAAAAGAACAAGTATGCTCTTTTGTTAACATCAGAGTCTCTTAGTACAAATTGGTATTCAGGAAACAATAGGTCAATGATCCTTGCAAATTGTCTTTTCCGTACCGGCGGTTGTGCAATTCTTCTCACAAATAAAAGATCCTTAAAACACAAAGCTATACTGAAGTTGAAGTGTCTAGTTAGAACTCATCATGGTGCTAGAGATGATGCTCATAACTGTTGTAGTCAAAAAGAAGATGAACAAGGTAAACTTGGTTTTTACCTAGCTAAAGATCTTCCAAAAGCAGCTACAAGAGCTTTTACTGATAATTTAAGGGTGTTATCACCTAAAATTTTACCAGCTAGGGAAATATTTAGGTATATGCTTATGTCACTCATAAAAAAAGTGATAAAATATTTTGCTCCTAAGTCAGCTGCAAGATGGTTTGGAACAAGTAACAAATCACCAGTGAATTTCAAAACAGGTGTTGATCATTTTGTTCTTCACACTGGAGGAAAAGCAGTGATAGATGGAATTGGGATGAGTTTAGATCTGAATGATTATGACCTAGAACCAGCAAGAATGTCATTACATAGATTTGGTAATACATCAGCAAGTAGTTTGTGGTATGTGTTGGGGTATATGGAAGCTAAGAAGAGGTTGAAAAAAGGTGAGAGAGTATTGATGATAAGTTTAGGTGCTGGCTTTAAATGCAACAGTTGTTATTGGGAAGTAATGAGAGATGTTGTTGGTGATGATGGAAATGTGTGGGACGATTGCATTGATTACTATCCACCACACTCTTTGGCCAACCCATTCATGGAGAAGTACGGTTGGATTAACAACATTCAAGATCCAAACACTTTCAAACTCAAACTTGCTGAGTTTCTTCTCAGTCTTAAGTGA

Protein sequence

>Msa0222660

MHLCFLIWKKFDQRRDQECYILNYQCYKPSDERKLGSEQCGKIIGNNENIGLDECKFFLKAVVNSGIGEETYAPRNFIEGRTVNPTMEDEVEEMEEFCNDSIAKLLNKSGISPSEIDILVVNVSLFSSVPSLTSRIINHYKMREDIKAYNLSGMGCSASLISLDVIQNIFKSQKNKYALLLTSESLSTNWYSGNNRSMILANCLFRTGGCAILLTNKRSLKHKAILKLKCLVRTHHGARDDAHNCCSQKEDEQGKLGFYLAKDLPKAATRAFTDNLRVLSPKILPAREIFRYMLMSLIKKVIKYFAPKSAARWFGTSNKSPVNFKTGVDHFVLHTGGKAVIDGIGMSLDLNDYDLEPARMSLHRFGNTSASSLWYVLGYMEAKKRLKKGERVLMISLGAGFKCNSCYWEVMRDVVGDDGNVWDDCIDYYPPHSLANPFMEKYGWINNIQDPNTFKLKLAEFLLSLK*