Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301980 | XP_003597312.1 | 97.009 | 468 | 12 | 2 | 1 | 466 | 13 | 480 | 0.0 | 939 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301980 | sp|Q9SIB2|KCS12_ARATH | 66.079 | 454 | 149 | 3 | 7 | 456 | 19 | 471 | 0.0 | 634 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301980 | G7IUA7 | 97.009 | 468 | 12 | 2 | 1 | 466 | 13 | 480 | 0.0 | 939 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020630 | Msa0301980 | 0.815692 | 8.116141e-52 | -8.615850e-47 |
| Msa0022640 | Msa0301980 | 0.810517 | 1.108147e-50 | -8.615850e-47 |
| Msa0037820 | Msa0301980 | 0.805121 | 1.555301e-49 | -8.615850e-47 |
| Msa0043940 | Msa0301980 | 0.869064 | 4.094657e-66 | -8.615850e-47 |
| Msa0044710 | Msa0301980 | 0.826323 | 2.889216e-54 | -8.615850e-47 |
| Msa0050720 | Msa0301980 | 0.844149 | 9.038194e-59 | -8.615850e-47 |
| Msa0050770 | Msa0301980 | 0.833977 | 3.912010e-56 | -8.615850e-47 |
| Msa0055280 | Msa0301980 | 0.802914 | 4.473759e-49 | -8.615850e-47 |
| Msa0074080 | Msa0301980 | 0.808768 | 2.632708e-50 | -8.615850e-47 |
| Msa0079770 | Msa0301980 | 0.830084 | 3.583883e-55 | -8.615850e-47 |
| Msa0084680 | Msa0301980 | 0.808920 | 2.443021e-50 | -8.615850e-47 |
| Msa0092710 | Msa0301980 | 0.870731 | 1.169407e-66 | -8.615850e-47 |
| Msa0094100 | Msa0301980 | 0.812369 | 4.388656e-51 | -8.615850e-47 |
| Msa0101060 | Msa0301980 | 0.810335 | 1.213157e-50 | -8.615850e-47 |
| Msa0103000 | Msa0301980 | 0.801921 | 7.168691e-49 | -8.615850e-47 |
| Msa0104290 | Msa0301980 | 0.822774 | 1.978476e-53 | -8.615850e-47 |
| Msa0105340 | Msa0301980 | 0.803044 | 4.205996e-49 | -8.615850e-47 |
| Msa0127440 | Msa0301980 | 0.830984 | 2.157983e-55 | -8.615850e-47 |
| Msa0147560 | Msa0301980 | 0.813194 | 2.895152e-51 | -8.615850e-47 |
| Msa0153430 | Msa0301980 | 0.801574 | 8.442356e-49 | -8.615850e-47 |
| Msa0155110 | Msa0301980 | 0.813505 | 2.474229e-51 | -8.615850e-47 |
| Msa0155610 | Msa0301980 | 0.818163 | 2.261857e-52 | -8.615850e-47 |
| Msa0159750 | Msa0301980 | 0.814670 | 1.368921e-51 | -8.615850e-47 |
| Msa0161680 | Msa0301980 | 0.808449 | 3.081123e-50 | -8.615850e-47 |
| Msa0168100 | Msa0301980 | 0.802356 | 5.832991e-49 | -8.615850e-47 |
| Msa0173740 | Msa0301980 | 0.801504 | 8.729494e-49 | -8.615850e-47 |
| Msa0182640 | Msa0301980 | 0.856468 | 3.153061e-62 | -8.615850e-47 |
| Msa0182930 | Msa0301980 | 0.819365 | 1.206832e-52 | -8.615850e-47 |
| Msa0193760 | Msa0301980 | 0.830899 | 2.263859e-55 | -8.615850e-47 |
| Msa0208630 | Msa0301980 | 0.809253 | 2.072733e-50 | -8.615850e-47 |
| Msa0213080 | Msa0301980 | 0.811157 | 8.056739e-51 | -8.615850e-47 |
| Msa0222660 | Msa0301980 | 0.945038 | 6.437803e-104 | -8.615850e-47 |
| Msa0235550 | Msa0301980 | 0.845584 | 3.706757e-59 | -8.615850e-47 |
| Msa0264050 | Msa0301980 | 0.923350 | 2.981791e-89 | -8.615850e-47 |
| Msa0265820 | Msa0301980 | 0.814919 | 1.205380e-51 | -8.615850e-47 |
| Msa0274520 | Msa0301980 | 0.828384 | 9.266032e-55 | -8.615850e-47 |
| Msa0280490 | Msa0301980 | 0.831650 | 1.480019e-55 | -8.615850e-47 |
| Msa0282170 | Msa0301980 | 0.813028 | 3.148522e-51 | -8.615850e-47 |
| Msa0292180 | Msa0301980 | 0.804219 | 2.399796e-49 | -8.615850e-47 |
| Msa0301980 | Msa0339310 | 0.930296 | 2.013106e-93 | -8.615850e-47 |
| Msa0301980 | Msa0354390 | 0.802027 | 6.817106e-49 | -8.615850e-47 |
| Msa0301980 | Msa0358170 | 0.821757 | 3.406520e-53 | -8.615850e-47 |
| Msa0301980 | Msa0361250 | 0.825881 | 3.680058e-54 | -8.615850e-47 |
| Msa0301980 | Msa0371540 | 0.812442 | 4.231211e-51 | -8.615850e-47 |
| Msa0301980 | Msa0371570 | 0.820448 | 6.821864e-53 | -8.615850e-47 |
| Msa0301980 | Msa0378080 | 0.807683 | 4.484667e-50 | -8.615850e-47 |
| Msa0301980 | Msa0408630 | 0.832143 | 1.118225e-55 | -8.615850e-47 |
| Msa0301980 | Msa0414780 | 0.825496 | 4.540944e-54 | -8.615850e-47 |
| Msa0301980 | Msa0418430 | 0.808583 | 2.883998e-50 | -8.615850e-47 |
| Msa0301980 | Msa0419970 | 0.837370 | 5.409526e-57 | -8.615850e-47 |
| Msa0301980 | Msa0419990 | 0.827129 | 1.855180e-54 | -8.615850e-47 |
| Msa0301980 | Msa0431520 | 0.818732 | 1.680961e-52 | -8.615850e-47 |
| Msa0301980 | Msa0431830 | 0.834641 | 2.664655e-56 | -8.615850e-47 |
| Msa0301980 | Msa0436500 | 0.803790 | 2.947157e-49 | -8.615850e-47 |
| Msa0301980 | Msa0462590 | 0.802859 | 4.593746e-49 | -8.615850e-47 |
| Msa0301980 | Msa0465930 | 0.809762 | 1.611726e-50 | -8.615850e-47 |
| Msa0301980 | Msa0466060 | 0.800533 | 1.378601e-48 | -8.615850e-47 |
| Msa0301980 | Msa0468160 | 0.816560 | 5.192373e-52 | -8.615850e-47 |
| Msa0301980 | Msa0470180 | 0.805469 | 1.315159e-49 | -8.615850e-47 |
| Msa0301980 | Msa0484690 | 0.806578 | 7.684584e-50 | -8.615850e-47 |
| Msa0301980 | Msa0490300 | 0.800753 | 1.243366e-48 | -8.615850e-47 |
| Msa0301980 | Msa0517330 | 0.814157 | 1.777700e-51 | -8.615850e-47 |
| Msa0301980 | Msa0517340 | 0.809763 | 1.611122e-50 | -8.615850e-47 |
| Msa0301980 | Msa0518040 | 0.808288 | 3.333004e-50 | -8.615850e-47 |
| Msa0301980 | Msa0520220 | 0.814760 | 1.307194e-51 | -8.615850e-47 |
| Msa0301980 | Msa0530950 | 0.807852 | 4.127324e-50 | -8.615850e-47 |
| Msa0301980 | Msa0532840 | 0.813040 | 3.129626e-51 | -8.615850e-47 |
| Msa0301980 | Msa0533010 | 0.819328 | 1.230627e-52 | -8.615850e-47 |
| Msa0301980 | Msa0555950 | 0.827532 | 1.485556e-54 | -8.615850e-47 |
| Msa0301980 | Msa0561510 | 0.801434 | 9.020132e-49 | -8.615850e-47 |
| Msa0301980 | Msa0564930 | 0.804517 | 2.079453e-49 | -8.615850e-47 |
| Msa0301980 | Msa0579390 | 0.800267 | 1.561323e-48 | -8.615850e-47 |
| Msa0301980 | Msa0583790 | 0.806295 | 8.815007e-50 | -8.615850e-47 |
| Msa0301980 | Msa0590660 | 0.816283 | 5.990492e-52 | -8.615850e-47 |
| Msa0301980 | Msa0607200 | 0.811428 | 7.037637e-51 | -8.615850e-47 |
| Msa0301980 | Msa0610370 | 0.821300 | 4.344209e-53 | -8.615850e-47 |
| Msa0301980 | Msa0618010 | 0.807027 | 6.176395e-50 | -8.615850e-47 |
| Msa0301980 | Msa0620640 | 0.807773 | 4.290897e-50 | -8.615850e-47 |
| Msa0301980 | Msa0628100 | 0.808003 | 3.834628e-50 | -8.615850e-47 |
| Msa0301980 | Msa0638280 | 0.800629 | 1.317377e-48 | -8.615850e-47 |
| Msa0301980 | Msa0642180 | 0.816801 | 4.585250e-52 | -8.615850e-47 |
| Msa0301980 | Msa0649970 | 0.809946 | 1.471281e-50 | -8.615850e-47 |
| Msa0301980 | Msa0650900 | 0.808678 | 2.752855e-50 | -8.615850e-47 |
| Msa0301980 | Msa0662650 | 0.800719 | 1.263317e-48 | -8.615850e-47 |
| Msa0301980 | Msa0677820 | 0.806738 | 7.108149e-50 | -8.615850e-47 |
| Msa0301980 | Msa0704220 | 0.829649 | 4.573729e-55 | -8.615850e-47 |
| Msa0301980 | Msa0714600 | 0.807873 | 4.085692e-50 | -8.615850e-47 |
| Msa0301980 | Msa0717150 | 0.818840 | 1.588795e-52 | -8.615850e-47 |
| Msa0301980 | Msa0720270 | 0.820320 | 7.301511e-53 | -8.615850e-47 |
| Msa0301980 | Msa0731710 | 0.800620 | 1.323097e-48 | -8.615850e-47 |
| Msa0301980 | Msa0734660 | 0.868322 | 7.115655e-66 | -8.615850e-47 |
| Msa0301980 | Msa0750380 | 0.802967 | 4.363482e-49 | -8.615850e-47 |
| Msa0301980 | Msa0752580 | 0.802734 | 4.873760e-49 | -8.615850e-47 |
| Msa0301980 | Msa0756310 | 0.804976 | 1.668053e-49 | -8.615850e-47 |
| Msa0301980 | Msa0758220 | 0.819896 | 9.126344e-53 | -8.615850e-47 |
| Msa0301980 | Msa0760840 | 0.813850 | 2.077302e-51 | -8.615850e-47 |
| Msa0301980 | Msa0760890 | 0.853746 | 1.948810e-61 | -8.615850e-47 |
| Msa0301980 | Msa0769830 | 0.820226 | 7.670455e-53 | -8.615850e-47 |
| Msa0301980 | Msa0773610 | 0.806288 | 8.849105e-50 | -8.615850e-47 |
| Msa0301980 | Msa0775260 | 0.807167 | 5.768322e-50 | -8.615850e-47 |
| Msa0301980 | Msa0776220 | 0.852952 | 3.292672e-61 | -8.615850e-47 |
| Msa0301980 | Msa0784640 | 0.812750 | 3.623840e-51 | -8.615850e-47 |
| Msa0301980 | Msa0799570 | 0.829041 | 6.426976e-55 | -8.615850e-47 |
| Msa0301980 | Msa0813670 | 0.845436 | 4.067074e-59 | -8.615850e-47 |
| Msa0301980 | Msa0813720 | 0.804742 | 1.866720e-49 | -8.615850e-47 |
| Msa0301980 | Msa0833040 | 0.809929 | 1.483977e-50 | -8.615850e-47 |
| Msa0301980 | Msa0835730 | 0.808400 | 3.155606e-50 | -8.615850e-47 |
| Msa0301980 | Msa0837790 | 0.819021 | 1.445464e-52 | -8.615850e-47 |
| Msa0301980 | Msa0848360 | 0.817800 | 2.732599e-52 | -8.615850e-47 |
| Msa0301980 | Msa0848380 | 0.801872 | 7.333525e-49 | -8.615850e-47 |
| Msa0301980 | Msa0848760 | 0.817751 | 2.803385e-52 | -8.615850e-47 |
| Msa0301980 | Msa0853170 | 0.810408 | 1.170244e-50 | -8.615850e-47 |
| Msa0301980 | Msa0854120 | 0.809422 | 1.907162e-50 | -8.615850e-47 |
| Msa0301980 | Msa0859560 | 0.804856 | 1.767446e-49 | -8.615850e-47 |
| Msa0301980 | Msa0870620 | 0.823048 | 1.707891e-53 | -8.615850e-47 |
| Msa0301980 | Msa0872420 | 0.800366 | 1.490772e-48 | -8.615850e-47 |
| Msa0301980 | Msa0903730 | 0.813111 | 3.019183e-51 | -8.615850e-47 |
| Msa0301980 | Msa0905260 | 0.829611 | 4.671316e-55 | -8.615850e-47 |
| Msa0301980 | Msa0909710 | 0.827145 | 1.839101e-54 | -8.615850e-47 |
| Msa0301980 | Msa0937240 | 0.845877 | 3.087285e-59 | -8.615850e-47 |
| Msa0301980 | Msa0937940 | 0.804791 | 1.822957e-49 | -8.615850e-47 |
| Msa0301980 | Msa0946320 | 0.807955 | 3.924750e-50 | -8.615850e-47 |
| Msa0301980 | Msa0974530 | 0.830690 | 2.548120e-55 | -8.615850e-47 |
| Msa0301980 | Msa1004210 | 0.829779 | 4.253532e-55 | -8.615850e-47 |
| Msa0301980 | Msa1026760 | 0.822406 | 2.409772e-53 | -8.615850e-47 |
| Msa0301980 | Msa1026790 | 0.819205 | 1.312194e-52 | -8.615850e-47 |
| Msa0301980 | Msa1046610 | 0.837644 | 4.602402e-57 | -8.615850e-47 |
| Msa0301980 | Msa1048330 | 0.811732 | 6.041890e-51 | -8.615850e-47 |
| Msa0301980 | Msa1053260 | 0.804465 | 2.132564e-49 | -8.615850e-47 |
| Msa0301980 | Msa1059420 | 0.820134 | 8.052590e-53 | -8.615850e-47 |
| Msa0301980 | Msa1070420 | 0.815349 | 9.673312e-52 | -8.615850e-47 |
| Msa0301980 | Msa1078570 | 0.813457 | 2.535098e-51 | -8.615850e-47 |
| Msa0301980 | Msa1078740 | 0.814440 | 1.539226e-51 | -8.615850e-47 |
| Msa0301980 | Msa1095480 | 0.825540 | 4.434450e-54 | -8.615850e-47 |
| Msa0301980 | Msa1100260 | 0.802932 | 4.436623e-49 | -8.615850e-47 |
| Msa0301980 | Msa1100490 | 0.824796 | 6.648745e-54 | -8.615850e-47 |
| Msa0301980 | Msa1111630 | 0.813286 | 2.764360e-51 | -8.615850e-47 |
| Msa0301980 | Msa1134850 | 0.803755 | 2.996593e-49 | -8.615850e-47 |
| Msa0301980 | Msa1142500 | 0.838865 | 2.230307e-57 | -8.615850e-47 |
| Msa0301980 | Msa1150230 | 0.817064 | 4.002822e-52 | -8.615850e-47 |
| Msa0301980 | Msa1154160 | 0.821553 | 3.797922e-53 | -8.615850e-47 |
| Msa0301980 | Msa1157730 | 0.808662 | 2.774435e-50 | -8.615850e-47 |
| Msa0301980 | Msa1167170 | 0.802719 | 4.909269e-49 | -8.615850e-47 |
| Msa0301980 | Msa1169970 | 0.805117 | 1.558148e-49 | -8.615850e-47 |
| Msa0301980 | Msa1176160 | 0.805744 | 1.151440e-49 | -8.615850e-47 |
| Msa0301980 | Msa1178160 | 0.818262 | 2.148052e-52 | -8.615850e-47 |
| Msa0301980 | Msa1206020 | 0.837558 | 4.841883e-57 | -8.615850e-47 |
| Msa0301980 | Msa1217810 | 0.808966 | 2.388759e-50 | -8.615850e-47 |
| Msa0301980 | Msa1228210 | 0.800603 | 1.333928e-48 | -8.615850e-47 |
| Msa0301980 | Msa1272480 | 0.816722 | 4.776521e-52 | -8.615850e-47 |
| Msa0301980 | Msa1282920 | 0.805069 | 1.594540e-49 | -8.615850e-47 |
| Msa0301980 | Msa1292730 | 0.823258 | 1.525803e-53 | -8.615850e-47 |
| Msa0301980 | Msa1305750 | 0.833299 | 5.775868e-56 | -8.615850e-47 |
| Msa0301980 | Msa1328850 | 0.831404 | 1.701402e-55 | -8.615850e-47 |
| Msa0301980 | Msa1336480 | 0.818134 | 2.296224e-52 | -8.615850e-47 |
| Msa0301980 | Msa1348950 | 0.814499 | 1.493189e-51 | -8.615850e-47 |
| Msa0301980 | Msa1374440 | 0.805629 | 1.217155e-49 | -8.615850e-47 |
| Msa0301980 | Msa1378460 | 0.806340 | 8.628455e-50 | -8.615850e-47 |
| Msa0301980 | Msa1378470 | 0.808263 | 3.374889e-50 | -8.615850e-47 |
| Msa0301980 | Msa1385620 | 0.831233 | 1.874292e-55 | -8.615850e-47 |
| Msa0301980 | Msa1397970 | 0.803142 | 4.014010e-49 | -8.615850e-47 |
| Msa0301980 | Msa1421870 | 0.803780 | 2.960473e-49 | -8.615850e-47 |
| Msa0301980 | Msa1422270 | 0.801462 | 8.904211e-49 | -8.615850e-47 |
| Msa0301980 | Msa1427830 | 0.835408 | 1.707767e-56 | -8.615850e-47 |
| Msa0301980 | Msa1439120 | 0.875781 | 2.349911e-68 | -8.615850e-47 |
| Msa0301980 | Msa1440220 | 0.867439 | 1.367362e-65 | -8.615850e-47 |
| Msa0301980 | Msa1440610 | 0.846788 | 1.743157e-59 | -8.615850e-47 |
| Msa0301980 | Msa1442290 | 0.829837 | 4.117245e-55 | -8.615850e-47 |
| Msa0301980 | Msa1447440 | 0.814642 | 1.388839e-51 | -8.615850e-47 |
| Msa0301980 | Msa1450020 | 0.807536 | 4.819013e-50 | -8.615850e-47 |
| Msa0301980 | Msa1453620 | 0.802542 | 5.338932e-49 | -8.615850e-47 |
| Msa0301980 | Msa1453710 | 0.806265 | 8.945359e-50 | -8.615850e-47 |
| Msa0301980 | Msa1454110 | 0.831793 | 1.364428e-55 | -8.615850e-47 |
| Msa0301980 | Msa1455660 | 0.872460 | 3.126430e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301980 | MtrunA17_Chr2g0327721 | 97.009 | 468 | 12 | 2 | 1 | 466 | 13 | 480 | 0.0 | 939 |
| Msa0301980 | MtrunA17_Chr4g0030601 | 71.335 | 457 | 120 | 3 | 1 | 456 | 13 | 459 | 0.0 | 707 |
| Msa0301980 | MtrunA17_Chr4g0030581 | 72.570 | 463 | 122 | 3 | 1 | 462 | 13 | 471 | 0.0 | 702 |
| Msa0301980 | MtrunA17_Chr4g0030591 | 70.259 | 464 | 132 | 3 | 1 | 462 | 13 | 472 | 0.0 | 685 |
| Msa0301980 | MtrunA17_Chr1g0212951 | 54.566 | 449 | 184 | 5 | 13 | 447 | 26 | 468 | 0.0 | 516 |
| Msa0301980 | MtrunA17_Chr7g0276251 | 44.186 | 430 | 221 | 6 | 14 | 436 | 117 | 534 | 4.67e-123 | 369 |
| Msa0301980 | MtrunA17_Chr1g0188051 | 41.379 | 435 | 233 | 8 | 3 | 432 | 88 | 505 | 4.83e-110 | 335 |
| Msa0301980 | MtrunA17_Chr1g0209881 | 40.553 | 434 | 238 | 7 | 3 | 432 | 72 | 489 | 3.67e-109 | 332 |
| Msa0301980 | MtrunA17_Chr5g0423521 | 41.055 | 436 | 234 | 7 | 4 | 432 | 70 | 489 | 7.16e-109 | 331 |
| Msa0301980 | MtrunA17_Chr4g0035081 | 40.000 | 420 | 232 | 5 | 15 | 430 | 96 | 499 | 3.81e-108 | 330 |
| Msa0301980 | MtrunA17_Chr3g0136561 | 40.047 | 427 | 233 | 5 | 15 | 430 | 486 | 900 | 1.10e-106 | 337 |
| Msa0301980 | MtrunA17_Chr4g0063011 | 39.430 | 421 | 234 | 5 | 15 | 430 | 87 | 491 | 1.39e-105 | 323 |
| Msa0301980 | MtrunA17_Chr1g0166191 | 39.007 | 423 | 237 | 4 | 15 | 432 | 105 | 511 | 4.37e-105 | 322 |
| Msa0301980 | MtrunA17_Chr2g0306781 | 41.689 | 379 | 200 | 4 | 57 | 430 | 34 | 396 | 1.97e-99 | 304 |
| Msa0301980 | MtrunA17_Chr2g0277841 | 40.048 | 417 | 236 | 4 | 15 | 430 | 45 | 448 | 1.96e-97 | 300 |
| Msa0301980 | MtrunA17_Chr6g0480561 | 38.955 | 421 | 227 | 10 | 20 | 430 | 65 | 465 | 1.27e-94 | 293 |
| Msa0301980 | MtrunA17_Chr2g0295781 | 36.967 | 422 | 251 | 5 | 11 | 430 | 40 | 448 | 1.41e-91 | 285 |
| Msa0301980 | MtrunA17_Chr2g0282281 | 35.784 | 408 | 243 | 4 | 17 | 422 | 110 | 500 | 2.87e-88 | 278 |
| Msa0301980 | MtrunA17_Chr7g0276241 | 44.000 | 300 | 149 | 4 | 136 | 432 | 2 | 285 | 1.17e-87 | 270 |
| Msa0301980 | MtrunA17_Chr1g0204301 | 37.647 | 425 | 237 | 8 | 15 | 430 | 78 | 483 | 3.98e-86 | 272 |
| Msa0301980 | MtrunA17_Chr7g0250661 | 42.667 | 300 | 152 | 3 | 136 | 430 | 2 | 286 | 1.83e-83 | 259 |
| Msa0301980 | MtrunA17_Chr3g0115021 | 37.055 | 421 | 234 | 8 | 20 | 430 | 83 | 482 | 1.32e-82 | 263 |
| Msa0301980 | MtrunA17_Chr3g0115041 | 37.055 | 421 | 234 | 8 | 20 | 430 | 83 | 482 | 1.41e-82 | 263 |
| Msa0301980 | MtrunA17_Chr6g0469631 | 37.589 | 423 | 229 | 8 | 20 | 430 | 82 | 481 | 1.97e-78 | 252 |
| Msa0301980 | MtrunA17_Chr6g0461631 | 39.474 | 266 | 141 | 3 | 170 | 430 | 3 | 253 | 6.93e-62 | 202 |
| Msa0301980 | MtrunA17_Chr4g0026871 | 41.841 | 239 | 118 | 4 | 198 | 430 | 1 | 224 | 5.28e-57 | 188 |
| Msa0301980 | MtrunA17_Chr4g0026791 | 43.523 | 193 | 91 | 3 | 198 | 386 | 1 | 179 | 5.70e-44 | 152 |
| Msa0301980 | MtrunA17_Chr4g0026721 | 37.870 | 169 | 85 | 3 | 267 | 430 | 3 | 156 | 1.73e-32 | 121 |
| Msa0301980 | MtrunA17_Chr4g0026861 | 31.056 | 161 | 110 | 1 | 11 | 171 | 54 | 213 | 3.80e-22 | 94.4 |
| Msa0301980 | MtrunA17_Chr6g0461621 | 32.222 | 180 | 114 | 5 | 6 | 182 | 55 | 229 | 9.88e-21 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0301980 | AT2G28630.2 | 66.079 | 454 | 149 | 3 | 7 | 456 | 19 | 471 | 0.0 | 634 |
| Msa0301980 | AT2G28630.1 | 66.079 | 454 | 149 | 3 | 7 | 456 | 19 | 471 | 0.0 | 634 |
| Msa0301980 | AT1G07720.2 | 65.096 | 467 | 144 | 4 | 2 | 456 | 57 | 516 | 0.0 | 628 |
| Msa0301980 | AT1G07720.1 | 65.096 | 467 | 144 | 4 | 2 | 456 | 14 | 473 | 0.0 | 627 |
| Msa0301980 | AT5G04530.1 | 53.244 | 447 | 196 | 5 | 5 | 447 | 18 | 455 | 7.87e-180 | 511 |
| Msa0301980 | AT1G01120.1 | 42.958 | 426 | 213 | 6 | 15 | 430 | 118 | 523 | 7.36e-122 | 366 |
| Msa0301980 | AT2G46720.1 | 38.710 | 434 | 249 | 6 | 3 | 432 | 44 | 464 | 1.23e-110 | 335 |
| Msa0301980 | AT4G34510.1 | 41.080 | 426 | 228 | 5 | 11 | 430 | 74 | 482 | 2.52e-110 | 335 |
| Msa0301980 | AT1G25450.1 | 41.435 | 432 | 233 | 7 | 3 | 430 | 68 | 483 | 5.01e-109 | 332 |
| Msa0301980 | AT4G34520.1 | 39.723 | 433 | 226 | 6 | 15 | 430 | 73 | 487 | 4.65e-108 | 330 |
| Msa0301980 | AT2G15090.1 | 38.182 | 440 | 248 | 7 | 1 | 430 | 51 | 476 | 3.85e-107 | 327 |
| Msa0301980 | AT2G16280.1 | 40.000 | 425 | 225 | 6 | 15 | 430 | 104 | 507 | 7.20e-107 | 327 |
| Msa0301980 | AT1G19440.1 | 38.353 | 425 | 232 | 6 | 15 | 430 | 108 | 511 | 4.39e-106 | 325 |
| Msa0301980 | AT2G26640.1 | 40.411 | 438 | 233 | 8 | 1 | 430 | 83 | 500 | 1.16e-105 | 323 |
| Msa0301980 | AT5G43760.1 | 40.749 | 427 | 226 | 7 | 15 | 430 | 107 | 517 | 2.43e-105 | 323 |
| Msa0301980 | AT4G34250.1 | 38.426 | 432 | 228 | 6 | 15 | 430 | 75 | 484 | 4.24e-105 | 322 |
| Msa0301980 | AT1G68530.1 | 40.573 | 419 | 231 | 7 | 15 | 430 | 85 | 488 | 1.49e-104 | 320 |
| Msa0301980 | AT3G10280.1 | 36.952 | 433 | 251 | 5 | 3 | 432 | 44 | 457 | 7.07e-104 | 317 |
| Msa0301980 | AT1G04220.1 | 38.864 | 440 | 240 | 8 | 3 | 430 | 90 | 512 | 1.69e-103 | 319 |
| Msa0301980 | AT2G26250.1 | 36.009 | 436 | 254 | 5 | 15 | 430 | 117 | 547 | 3.04e-99 | 308 |
| Msa0301980 | AT5G49070.1 | 37.176 | 425 | 255 | 4 | 6 | 430 | 40 | 452 | 4.72e-95 | 295 |
| Msa0301980 | AT1G71160.1 | 36.983 | 411 | 246 | 3 | 20 | 430 | 48 | 445 | 3.72e-93 | 290 |
| Msa0301980 | AT3G52160.1 | 31.796 | 412 | 236 | 4 | 4 | 414 | 73 | 440 | 3.32e-75 | 243 |
| Msa0301980 | AT3G52160.2 | 34.270 | 356 | 189 | 4 | 60 | 414 | 16 | 327 | 2.96e-71 | 229 |
| Msa0301980 | AT1G68530.2 | 38.007 | 271 | 161 | 3 | 15 | 282 | 85 | 351 | 5.89e-58 | 196 |
| Msa0301980 | AT5G49070.2 | 31.183 | 279 | 189 | 2 | 3 | 281 | 37 | 312 | 2.02e-40 | 147 |
Find 72 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAATGCAACAGTTGTTAT+TGG | 0.230294 | 2_3:-58501912 | Msa0301980:CDS |
| CTTAGTACAAATTGGTATTC+AGG | 0.248106 | 2_3:-58502558 | Msa0301980:CDS |
| AAAGCTCTTGTAGCTGCTTT+TGG | 0.259427 | 2_3:+58502321 | None:intergenic |
| TACCAGCTAGGGAAATATTT+AGG | 0.265669 | 2_3:-58502263 | Msa0301980:CDS |
| ATGACATTCTTGCTGGTTCT+AGG | 0.278483 | 2_3:+58502052 | None:intergenic |
| CGGCCTTCGATGAAGTTTCT+TGG | 0.294675 | 2_3:+58502894 | None:intergenic |
| GTGGTATGTGTTGGGGTATA+TGG | 0.299234 | 2_3:-58501995 | Msa0301980:CDS |
| GAACAATGTGGCAAGATTAT+AGG | 0.312551 | 2_3:-58503002 | Msa0301980:CDS |
| TTACTATCCACCACACTCTT+TGG | 0.331528 | 2_3:-58501833 | Msa0301980:CDS |
| CCATCGTTGGGTTCACAGTT+CGG | 0.347303 | 2_3:+58502874 | None:intergenic |
| TCCACTTCGTCTTCCATCGT+TGG | 0.351430 | 2_3:+58502861 | None:intergenic |
| CAGAGTCTCTTAGTACAAAT+TGG | 0.351617 | 2_3:-58502566 | Msa0301980:CDS |
| ATAAAAGCTTATAACCTATC+TGG | 0.357029 | 2_3:-58502678 | Msa0301980:CDS |
| AGAATGTCATTACATAGATT+TGG | 0.358478 | 2_3:-58502039 | Msa0301980:CDS |
| TGCACTTGTGTTTCCTGATC+TGG | 0.359947 | 2_3:-58503112 | Msa0301980:CDS |
| TAAATGCAACAGTTGTTATT+GGG | 0.360260 | 2_3:-58501911 | Msa0301980:CDS |
| CTCTTTGGCCAACCCATTCA+TGG | 0.371696 | 2_3:-58501818 | Msa0301980:CDS |
| CTATGTAATGACATTCTTGC+TGG | 0.374650 | 2_3:+58502045 | None:intergenic |
| AGTTTGAGTTTGAAAGTGTT+TGG | 0.376688 | 2_3:+58501763 | None:intergenic |
| AAGCAGTGATAGATGGTATT+GGG | 0.387136 | 2_3:-58502101 | Msa0301980:CDS |
| CCACTTCGTCTTCCATCGTT+GGG | 0.388821 | 2_3:+58502862 | None:intergenic |
| CAACCGTACTTCTCCATGAA+TGG | 0.401060 | 2_3:+58501805 | None:intergenic |
| GGAAGACGAAGTGGAGGAAA+TGG | 0.412780 | 2_3:-58502853 | Msa0301980:CDS |
| CCAAGTGATGAAAGAAAACT+TGG | 0.421127 | 2_3:-58503029 | Msa0301980:CDS |
| AGCTTATAACCTATCTGGTA+TGG | 0.425685 | 2_3:-58502673 | Msa0301980:CDS |
| GCAAAGCTTCTAAACAAATC+AGG | 0.429501 | 2_3:-58502807 | Msa0301980:CDS |
| ATAGGAAACAATGAGAATAT+TGG | 0.429933 | 2_3:-58502984 | Msa0301980:CDS |
| CTGAGTTGACAACGGCTTTG+AGG | 0.431728 | 2_3:+58502940 | None:intergenic |
| TCACCAGTGAATTTCAAAAC+TGG | 0.431886 | 2_3:-58502156 | Msa0301980:CDS |
| ATTGGTATTCAGGAAACAAT+AGG | 0.432471 | 2_3:-58502548 | Msa0301980:CDS |
| AAGTCAGCTGCAAGATGGTT+TGG | 0.438277 | 2_3:-58502192 | Msa0301980:CDS |
| AGAGTATTGATGATAAGTTT+AGG | 0.443493 | 2_3:-58501943 | Msa0301980:CDS |
| ATGATTCTTGAAGTTAAAGA+AGG | 0.444901 | 2_3:+58502726 | None:intergenic |
| AAAGCAGTGATAGATGGTAT+TGG | 0.447144 | 2_3:-58502102 | Msa0301980:CDS |
| TACCTAAATATTTCCCTAGC+TGG | 0.449686 | 2_3:+58502261 | None:intergenic |
| AGTAGTTTGTGGTATGTGTT+GGG | 0.450299 | 2_3:-58502003 | Msa0301980:CDS |
| CAAATCAGGCATTTCACCTT+CGG | 0.453132 | 2_3:-58502793 | Msa0301980:CDS |
| CTCAAAGCCGTTGTCAACTC+AGG | 0.488420 | 2_3:-58502939 | Msa0301980:CDS |
| GGAGGAAAAGCAGTGATAGA+TGG | 0.488609 | 2_3:-58502108 | Msa0301980:CDS |
| AACCGTACTTCTCCATGAAT+GGG | 0.497250 | 2_3:+58501806 | None:intergenic |
| GAAGATGAACAAGGTAAACT+TGG | 0.499726 | 2_3:-58502366 | Msa0301980:CDS |
| AACCATCTTGCAGCTGACTT+AGG | 0.502261 | 2_3:+58502195 | None:intergenic |
| AGTTTAATATGTAACACTCT+TGG | 0.508115 | 2_3:+58503066 | None:intergenic |
| CTCCTAAGTCAGCTGCAAGA+TGG | 0.509644 | 2_3:-58502197 | Msa0301980:CDS |
| TTGATGATAAGTTTAGGTGC+TGG | 0.511949 | 2_3:-58501937 | Msa0301980:CDS |
| AAGTAGTTTGTGGTATGTGT+TGG | 0.515984 | 2_3:-58502004 | Msa0301980:CDS |
| GCCGTTGTCAACTCAGGCAT+TGG | 0.520687 | 2_3:-58502933 | Msa0301980:CDS |
| GAAGTAATGAGAGATGTTGT+TGG | 0.523138 | 2_3:-58501889 | Msa0301980:CDS |
| CACTACAACCCATACCAGAT+AGG | 0.541455 | 2_3:+58502664 | None:intergenic |
| GCTTATAACCTATCTGGTAT+GGG | 0.546638 | 2_3:-58502672 | Msa0301980:CDS |
| ACACATCAGCAAGTAGTTTG+TGG | 0.547190 | 2_3:-58502014 | Msa0301980:CDS |
| TTCGGAGATCGATATTCTTG+TGG | 0.562977 | 2_3:-58502775 | Msa0301980:CDS |
| CATTCATGGAGAAGTACGGT+TGG | 0.595870 | 2_3:-58501804 | Msa0301980:CDS |
| TGTCTAGTTAGAACTCATCA+TGG | 0.608151 | 2_3:-58502426 | Msa0301980:CDS |
| AACCCATTCATGGAGAAGTA+CGG | 0.611169 | 2_3:-58501808 | Msa0301980:CDS |
| GTACTTCTCCATGAATGGGT+TGG | 0.611489 | 2_3:+58501810 | None:intergenic |
| AACGATGGAAGACGAAGTGG+AGG | 0.619961 | 2_3:-58502859 | Msa0301980:CDS |
| GGTATATGGAAGCTAAGAAG+AGG | 0.621077 | 2_3:-58501981 | Msa0301980:CDS |
| CCCAACGATGGAAGACGAAG+TGG | 0.624451 | 2_3:-58502862 | Msa0301980:CDS |
| GCTCCAAGAAACTTCATCGA+AGG | 0.628524 | 2_3:-58502897 | Msa0301980:CDS |
| GAGAAGAATTGCACAACCGC+CGG | 0.629617 | 2_3:+58502494 | None:intergenic |
| GTAGTTTGTGGTATGTGTTG+GGG | 0.633510 | 2_3:-58502002 | Msa0301980:CDS |
| TAACCATTACAAAATGAGAG+AGG | 0.653134 | 2_3:-58502703 | Msa0301980:CDS |
| TGTCAACTCAGGCATTGGTG+AGG | 0.663337 | 2_3:-58502928 | Msa0301980:CDS |
| CCGAACTGTGAACCCAACGA+TGG | 0.667415 | 2_3:-58502874 | Msa0301980:CDS |
| ACAAGAATATCGATCTCCGA+AGG | 0.671733 | 2_3:+58502777 | None:intergenic |
| TGGTGATGATAGAAATGTGT+GGG | 0.672881 | 2_3:-58501869 | Msa0301980:CDS |
| ACCAATGCCTGAGTTGACAA+CGG | 0.693257 | 2_3:+58502932 | None:intergenic |
| AATGGGTTGGCCAAAGAGTG+TGG | 0.696430 | 2_3:+58501823 | None:intergenic |
| TTGGTGATGATAGAAATGTG+TGG | 0.701014 | 2_3:-58501870 | Msa0301980:CDS |
| GGGTTGGCCAAAGAGTGTGG+TGG | 0.735704 | 2_3:+58501826 | None:intergenic |
| AAACTTGGAAGTGAACAATG+TGG | 0.743662 | 2_3:-58503014 | Msa0301980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGCTTTTACTGATAATTTAA+GGG | - | chr2_3:58502544-58502563 | Msa0301980:CDS | 20.0% |
| !!! | AGCTTTTACTGATAATTTAA+GGG | - | chr2_3:58502544-58502563 | Msa0301980:CDS | 20.0% |
| ! | GAAAAAATTTGATCAGAGAA+GGG | - | chr2_3:58501758-58501777 | Msa0301980:CDS | 25.0% |
| ! | AGTTTAATATGTAACACTCT+TGG | + | chr2_3:58501785-58501804 | None:intergenic | 25.0% |
| ! | ATAGGAAACAATGAGAATAT+TGG | - | chr2_3:58501864-58501883 | Msa0301980:CDS | 25.0% |
| ! | ATGATTCTTGAAGTTAAAGA+AGG | + | chr2_3:58502125-58502144 | None:intergenic | 25.0% |
| ! | ATAAAAGCTTATAACCTATC+TGG | - | chr2_3:58502170-58502189 | Msa0301980:CDS | 25.0% |
| !! | GAGCTTTTACTGATAATTTA+AGG | - | chr2_3:58502543-58502562 | Msa0301980:CDS | 25.0% |
| ! | AGAATGTCATTACATAGATT+TGG | - | chr2_3:58502809-58502828 | Msa0301980:CDS | 25.0% |
| !!! | AGAGTATTGATGATAAGTTT+AGG | - | chr2_3:58502905-58502924 | Msa0301980:CDS | 25.0% |
| ! | TTAAATGCAACAGTTGTTAT+TGG | - | chr2_3:58502936-58502955 | Msa0301980:CDS | 25.0% |
| !! | TAAATGCAACAGTTGTTATT+GGG | - | chr2_3:58502937-58502956 | Msa0301980:CDS | 25.0% |
| ! | GAAAAAATTTGATCAGAGAA+GGG | - | chr2_3:58501758-58501777 | Msa0301980:CDS | 25.0% |
| ! | AGTTTAATATGTAACACTCT+TGG | + | chr2_3:58501785-58501804 | None:intergenic | 25.0% |
| ! | ATAGGAAACAATGAGAATAT+TGG | - | chr2_3:58501864-58501883 | Msa0301980:CDS | 25.0% |
| ! | ATGATTCTTGAAGTTAAAGA+AGG | + | chr2_3:58502125-58502144 | None:intergenic | 25.0% |
| ! | ATAAAAGCTTATAACCTATC+TGG | - | chr2_3:58502170-58502189 | Msa0301980:CDS | 25.0% |
| !! | GAGCTTTTACTGATAATTTA+AGG | - | chr2_3:58502543-58502562 | Msa0301980:CDS | 25.0% |
| ! | AGAATGTCATTACATAGATT+TGG | - | chr2_3:58502809-58502828 | Msa0301980:CDS | 25.0% |
| !!! | AGAGTATTGATGATAAGTTT+AGG | - | chr2_3:58502905-58502924 | Msa0301980:CDS | 25.0% |
| ! | TTAAATGCAACAGTTGTTAT+TGG | - | chr2_3:58502936-58502955 | Msa0301980:CDS | 25.0% |
| !! | TAAATGCAACAGTTGTTATT+GGG | - | chr2_3:58502937-58502956 | Msa0301980:CDS | 25.0% |
| !!! | GATCAAATTTTTTCCAGATC+AGG | + | chr2_3:58501752-58501771 | None:intergenic | 30.0% |
| GGAAAAAATTTGATCAGAGA+AGG | - | chr2_3:58501757-58501776 | Msa0301980:CDS | 30.0% | |
| TAACCATTACAAAATGAGAG+AGG | - | chr2_3:58502145-58502164 | Msa0301980:CDS | 30.0% | |
| ! | TATCCTCTCTCATTTTGTAA+TGG | + | chr2_3:58502151-58502170 | None:intergenic | 30.0% |
| CTTAGTACAAATTGGTATTC+AGG | - | chr2_3:58502290-58502309 | Msa0301980:CDS | 30.0% | |
| ATTGGTATTCAGGAAACAAT+AGG | - | chr2_3:58502300-58502319 | Msa0301980:CDS | 30.0% | |
| !!! | CAGTATAGCTTTGTGTTTTA+AGG | + | chr2_3:58502393-58502412 | None:intergenic | 30.0% |
| AGTCAAAAAGAAGATGAACA+AGG | - | chr2_3:58502473-58502492 | Msa0301980:CDS | 30.0% | |
| ! | ACCTAAAATTTTACCAGCTA+GGG | - | chr2_3:58502574-58502593 | Msa0301980:CDS | 30.0% |
| !! | AGTTTGAGTTTGAAAGTGTT+TGG | + | chr2_3:58503088-58503107 | None:intergenic | 30.0% |
| !!! | GATCAAATTTTTTCCAGATC+AGG | + | chr2_3:58501752-58501771 | None:intergenic | 30.0% |
| GGAAAAAATTTGATCAGAGA+AGG | - | chr2_3:58501757-58501776 | Msa0301980:CDS | 30.0% | |
| TAACCATTACAAAATGAGAG+AGG | - | chr2_3:58502145-58502164 | Msa0301980:CDS | 30.0% | |
| ! | TATCCTCTCTCATTTTGTAA+TGG | + | chr2_3:58502151-58502170 | None:intergenic | 30.0% |
| CTTAGTACAAATTGGTATTC+AGG | - | chr2_3:58502290-58502309 | Msa0301980:CDS | 30.0% | |
| ATTGGTATTCAGGAAACAAT+AGG | - | chr2_3:58502300-58502319 | Msa0301980:CDS | 30.0% | |
| !!! | CAGTATAGCTTTGTGTTTTA+AGG | + | chr2_3:58502393-58502412 | None:intergenic | 30.0% |
| AGTCAAAAAGAAGATGAACA+AGG | - | chr2_3:58502473-58502492 | Msa0301980:CDS | 30.0% | |
| ! | ACCTAAAATTTTACCAGCTA+GGG | - | chr2_3:58502574-58502593 | Msa0301980:CDS | 30.0% |
| !! | AGTTTGAGTTTGAAAGTGTT+TGG | + | chr2_3:58503088-58503107 | None:intergenic | 30.0% |
| ! | CCAAGTTTTCTTTCATCACT+TGG | + | chr2_3:58501822-58501841 | None:intergenic | 35.0% |
| CCAAGTGATGAAAGAAAACT+TGG | - | chr2_3:58501819-58501838 | Msa0301980:CDS | 35.0% | |
| AAACTTGGAAGTGAACAATG+TGG | - | chr2_3:58501834-58501853 | Msa0301980:CDS | 35.0% | |
| GAACAATGTGGCAAGATTAT+AGG | - | chr2_3:58501846-58501865 | Msa0301980:CDS | 35.0% | |
| GCAAAGCTTCTAAACAAATC+AGG | - | chr2_3:58502041-58502060 | Msa0301980:CDS | 35.0% | |
| AGCTTATAACCTATCTGGTA+TGG | - | chr2_3:58502175-58502194 | Msa0301980:CDS | 35.0% | |
| GCTTATAACCTATCTGGTAT+GGG | - | chr2_3:58502176-58502195 | Msa0301980:CDS | 35.0% | |
| CAGAGTCTCTTAGTACAAAT+TGG | - | chr2_3:58502282-58502301 | Msa0301980:CDS | 35.0% | |
| !! | GCAAATTGTCTTTTTCGTAC+CGG | - | chr2_3:58502335-58502354 | Msa0301980:CDS | 35.0% |
| TGTCTAGTTAGAACTCATCA+TGG | - | chr2_3:58502422-58502441 | Msa0301980:CDS | 35.0% | |
| GAAGATGAACAAGGTAAACT+TGG | - | chr2_3:58502482-58502501 | Msa0301980:CDS | 35.0% | |
| !! | CTTTTGGAAGATCTTTTGCT+AGG | + | chr2_3:58502514-58502533 | None:intergenic | 35.0% |
| ! | CACCTAAAATTTTACCAGCT+AGG | - | chr2_3:58502573-58502592 | Msa0301980:CDS | 35.0% |
| ! | TCCCTAGCTGGTAAAATTTT+AGG | + | chr2_3:58502578-58502597 | None:intergenic | 35.0% |
| TACCAGCTAGGGAAATATTT+AGG | - | chr2_3:58502585-58502604 | Msa0301980:CDS | 35.0% | |
| TACCTAAATATTTCCCTAGC+TGG | + | chr2_3:58502590-58502609 | None:intergenic | 35.0% | |
| TCACCAGTGAATTTCAAAAC+TGG | - | chr2_3:58502692-58502711 | Msa0301980:CDS | 35.0% | |
| !!! | ACACCAGTTTTGAAATTCAC+TGG | + | chr2_3:58502698-58502717 | None:intergenic | 35.0% |
| AAAGCAGTGATAGATGGTAT+TGG | - | chr2_3:58502746-58502765 | Msa0301980:CDS | 35.0% | |
| AAGCAGTGATAGATGGTATT+GGG | - | chr2_3:58502747-58502766 | Msa0301980:CDS | 35.0% | |
| CTATGTAATGACATTCTTGC+TGG | + | chr2_3:58502806-58502825 | None:intergenic | 35.0% | |
| ! | AAGTAGTTTGTGGTATGTGT+TGG | - | chr2_3:58502844-58502863 | Msa0301980:CDS | 35.0% |
| ! | AGTAGTTTGTGGTATGTGTT+GGG | - | chr2_3:58502845-58502864 | Msa0301980:CDS | 35.0% |
| GCTAAGAAGAGGTTGAAAAA+AGG | - | chr2_3:58502878-58502897 | Msa0301980:CDS | 35.0% | |
| ! | TTGATGATAAGTTTAGGTGC+TGG | - | chr2_3:58502911-58502930 | Msa0301980:CDS | 35.0% |
| GAAGTAATGAGAGATGTTGT+TGG | - | chr2_3:58502959-58502978 | Msa0301980:CDS | 35.0% | |
| !! | TTGGTGATGATAGAAATGTG+TGG | - | chr2_3:58502978-58502997 | Msa0301980:CDS | 35.0% |
| ! | TGGTGATGATAGAAATGTGT+GGG | - | chr2_3:58502979-58502998 | Msa0301980:CDS | 35.0% |
| ! | CCAAGTTTTCTTTCATCACT+TGG | + | chr2_3:58501822-58501841 | None:intergenic | 35.0% |
| CCAAGTGATGAAAGAAAACT+TGG | - | chr2_3:58501819-58501838 | Msa0301980:CDS | 35.0% | |
| AAACTTGGAAGTGAACAATG+TGG | - | chr2_3:58501834-58501853 | Msa0301980:CDS | 35.0% | |
| GAACAATGTGGCAAGATTAT+AGG | - | chr2_3:58501846-58501865 | Msa0301980:CDS | 35.0% | |
| GCAAAGCTTCTAAACAAATC+AGG | - | chr2_3:58502041-58502060 | Msa0301980:CDS | 35.0% | |
| AGCTTATAACCTATCTGGTA+TGG | - | chr2_3:58502175-58502194 | Msa0301980:CDS | 35.0% | |
| GCTTATAACCTATCTGGTAT+GGG | - | chr2_3:58502176-58502195 | Msa0301980:CDS | 35.0% | |
| CAGAGTCTCTTAGTACAAAT+TGG | - | chr2_3:58502282-58502301 | Msa0301980:CDS | 35.0% | |
| !! | GCAAATTGTCTTTTTCGTAC+CGG | - | chr2_3:58502335-58502354 | Msa0301980:CDS | 35.0% |
| TGTCTAGTTAGAACTCATCA+TGG | - | chr2_3:58502422-58502441 | Msa0301980:CDS | 35.0% | |
| GAAGATGAACAAGGTAAACT+TGG | - | chr2_3:58502482-58502501 | Msa0301980:CDS | 35.0% | |
| !! | CTTTTGGAAGATCTTTTGCT+AGG | + | chr2_3:58502514-58502533 | None:intergenic | 35.0% |
| ! | CACCTAAAATTTTACCAGCT+AGG | - | chr2_3:58502573-58502592 | Msa0301980:CDS | 35.0% |
| ! | TCCCTAGCTGGTAAAATTTT+AGG | + | chr2_3:58502578-58502597 | None:intergenic | 35.0% |
| TACCAGCTAGGGAAATATTT+AGG | - | chr2_3:58502585-58502604 | Msa0301980:CDS | 35.0% | |
| TACCTAAATATTTCCCTAGC+TGG | + | chr2_3:58502590-58502609 | None:intergenic | 35.0% | |
| TCACCAGTGAATTTCAAAAC+TGG | - | chr2_3:58502692-58502711 | Msa0301980:CDS | 35.0% | |
| !!! | ACACCAGTTTTGAAATTCAC+TGG | + | chr2_3:58502698-58502717 | None:intergenic | 35.0% |
| AAAGCAGTGATAGATGGTAT+TGG | - | chr2_3:58502746-58502765 | Msa0301980:CDS | 35.0% | |
| AAGCAGTGATAGATGGTATT+GGG | - | chr2_3:58502747-58502766 | Msa0301980:CDS | 35.0% | |
| CTATGTAATGACATTCTTGC+TGG | + | chr2_3:58502806-58502825 | None:intergenic | 35.0% | |
| ! | AAGTAGTTTGTGGTATGTGT+TGG | - | chr2_3:58502844-58502863 | Msa0301980:CDS | 35.0% |
| ! | AGTAGTTTGTGGTATGTGTT+GGG | - | chr2_3:58502845-58502864 | Msa0301980:CDS | 35.0% |
| GCTAAGAAGAGGTTGAAAAA+AGG | - | chr2_3:58502878-58502897 | Msa0301980:CDS | 35.0% | |
| ! | TTGATGATAAGTTTAGGTGC+TGG | - | chr2_3:58502911-58502930 | Msa0301980:CDS | 35.0% |
| GAAGTAATGAGAGATGTTGT+TGG | - | chr2_3:58502959-58502978 | Msa0301980:CDS | 35.0% | |
| !! | TTGGTGATGATAGAAATGTG+TGG | - | chr2_3:58502978-58502997 | Msa0301980:CDS | 35.0% |
| ! | TGGTGATGATAGAAATGTGT+GGG | - | chr2_3:58502979-58502998 | Msa0301980:CDS | 35.0% |
| CAAATCAGGCATTTCACCTT+CGG | - | chr2_3:58502055-58502074 | Msa0301980:CDS | 40.0% | |
| ACAAGAATATCGATCTCCGA+AGG | + | chr2_3:58502074-58502093 | None:intergenic | 40.0% | |
| TTCGGAGATCGATATTCTTG+TGG | - | chr2_3:58502073-58502092 | Msa0301980:CDS | 40.0% | |
| !! | AATTGTCTTTTTCGTACCGG+CGG | - | chr2_3:58502338-58502357 | Msa0301980:CDS | 40.0% |
| !! | AAAGCTCTTGTAGCTGCTTT+TGG | + | chr2_3:58502530-58502549 | None:intergenic | 40.0% |
| ! | GATCATTTTGTTCTCCACAC+TGG | - | chr2_3:58502719-58502738 | Msa0301980:CDS | 40.0% |
| !! | ATGACATTCTTGCTGGTTCT+AGG | + | chr2_3:58502799-58502818 | None:intergenic | 40.0% |
| ACACATCAGCAAGTAGTTTG+TGG | - | chr2_3:58502834-58502853 | Msa0301980:CDS | 40.0% | |
| ! | GTAGTTTGTGGTATGTGTTG+GGG | - | chr2_3:58502846-58502865 | Msa0301980:CDS | 40.0% |
| GGTATATGGAAGCTAAGAAG+AGG | - | chr2_3:58502867-58502886 | Msa0301980:CDS | 40.0% | |
| TTACTATCCACCACACTCTT+TGG | - | chr2_3:58503015-58503034 | Msa0301980:CDS | 40.0% | |
| AACCCATTCATGGAGAAGTA+CGG | - | chr2_3:58503040-58503059 | Msa0301980:CDS | 40.0% | |
| AACCGTACTTCTCCATGAAT+GGG | + | chr2_3:58503045-58503064 | None:intergenic | 40.0% | |
| CAAATCAGGCATTTCACCTT+CGG | - | chr2_3:58502055-58502074 | Msa0301980:CDS | 40.0% | |
| ACAAGAATATCGATCTCCGA+AGG | + | chr2_3:58502074-58502093 | None:intergenic | 40.0% | |
| TTCGGAGATCGATATTCTTG+TGG | - | chr2_3:58502073-58502092 | Msa0301980:CDS | 40.0% | |
| !! | AATTGTCTTTTTCGTACCGG+CGG | - | chr2_3:58502338-58502357 | Msa0301980:CDS | 40.0% |
| !! | AAAGCTCTTGTAGCTGCTTT+TGG | + | chr2_3:58502530-58502549 | None:intergenic | 40.0% |
| ! | GATCATTTTGTTCTCCACAC+TGG | - | chr2_3:58502719-58502738 | Msa0301980:CDS | 40.0% |
| !! | ATGACATTCTTGCTGGTTCT+AGG | + | chr2_3:58502799-58502818 | None:intergenic | 40.0% |
| ACACATCAGCAAGTAGTTTG+TGG | - | chr2_3:58502834-58502853 | Msa0301980:CDS | 40.0% | |
| ! | GTAGTTTGTGGTATGTGTTG+GGG | - | chr2_3:58502846-58502865 | Msa0301980:CDS | 40.0% |
| GGTATATGGAAGCTAAGAAG+AGG | - | chr2_3:58502867-58502886 | Msa0301980:CDS | 40.0% | |
| TTACTATCCACCACACTCTT+TGG | - | chr2_3:58503015-58503034 | Msa0301980:CDS | 40.0% | |
| AACCCATTCATGGAGAAGTA+CGG | - | chr2_3:58503040-58503059 | Msa0301980:CDS | 40.0% | |
| AACCGTACTTCTCCATGAAT+GGG | + | chr2_3:58503045-58503064 | None:intergenic | 40.0% | |
| TGCACTTGTGTTTCCTGATC+TGG | - | chr2_3:58501736-58501755 | Msa0301980:CDS | 45.0% | |
| ! | ACCAATGCCTGAGTTGACAA+CGG | + | chr2_3:58501919-58501938 | None:intergenic | 45.0% |
| GCTCCAAGAAACTTCATCGA+AGG | - | chr2_3:58501951-58501970 | Msa0301980:CDS | 45.0% | |
| CACTACAACCCATACCAGAT+AGG | + | chr2_3:58502187-58502206 | None:intergenic | 45.0% | |
| ! | AACCATCTTGCAGCTGACTT+AGG | + | chr2_3:58502656-58502675 | None:intergenic | 45.0% |
| AAGTCAGCTGCAAGATGGTT+TGG | - | chr2_3:58502656-58502675 | Msa0301980:CDS | 45.0% | |
| ! | CATTTTGTTCTCCACACTGG+AGG | - | chr2_3:58502722-58502741 | Msa0301980:CDS | 45.0% |
| GGAGGAAAAGCAGTGATAGA+TGG | - | chr2_3:58502740-58502759 | Msa0301980:CDS | 45.0% | |
| GTGGTATGTGTTGGGGTATA+TGG | - | chr2_3:58502853-58502872 | Msa0301980:CDS | 45.0% | |
| GTACTTCTCCATGAATGGGT+TGG | + | chr2_3:58503041-58503060 | None:intergenic | 45.0% | |
| CAACCGTACTTCTCCATGAA+TGG | + | chr2_3:58503046-58503065 | None:intergenic | 45.0% | |
| ! | CATTCATGGAGAAGTACGGT+TGG | - | chr2_3:58503044-58503063 | Msa0301980:CDS | 45.0% |
| TGCACTTGTGTTTCCTGATC+TGG | - | chr2_3:58501736-58501755 | Msa0301980:CDS | 45.0% | |
| ! | ACCAATGCCTGAGTTGACAA+CGG | + | chr2_3:58501919-58501938 | None:intergenic | 45.0% |
| GCTCCAAGAAACTTCATCGA+AGG | - | chr2_3:58501951-58501970 | Msa0301980:CDS | 45.0% | |
| CACTACAACCCATACCAGAT+AGG | + | chr2_3:58502187-58502206 | None:intergenic | 45.0% | |
| ! | AACCATCTTGCAGCTGACTT+AGG | + | chr2_3:58502656-58502675 | None:intergenic | 45.0% |
| AAGTCAGCTGCAAGATGGTT+TGG | - | chr2_3:58502656-58502675 | Msa0301980:CDS | 45.0% | |
| ! | CATTTTGTTCTCCACACTGG+AGG | - | chr2_3:58502722-58502741 | Msa0301980:CDS | 45.0% |
| GGAGGAAAAGCAGTGATAGA+TGG | - | chr2_3:58502740-58502759 | Msa0301980:CDS | 45.0% | |
| GTGGTATGTGTTGGGGTATA+TGG | - | chr2_3:58502853-58502872 | Msa0301980:CDS | 45.0% | |
| GTACTTCTCCATGAATGGGT+TGG | + | chr2_3:58503041-58503060 | None:intergenic | 45.0% | |
| CAACCGTACTTCTCCATGAA+TGG | + | chr2_3:58503046-58503065 | None:intergenic | 45.0% | |
| ! | CATTCATGGAGAAGTACGGT+TGG | - | chr2_3:58503044-58503063 | Msa0301980:CDS | 45.0% |
| ! | CTGAGTTGACAACGGCTTTG+AGG | + | chr2_3:58501911-58501930 | None:intergenic | 50.0% |
| CTCAAAGCCGTTGTCAACTC+AGG | - | chr2_3:58501909-58501928 | Msa0301980:CDS | 50.0% | |
| !! | TGTCAACTCAGGCATTGGTG+AGG | - | chr2_3:58501920-58501939 | Msa0301980:CDS | 50.0% |
| CGGCCTTCGATGAAGTTTCT+TGG | + | chr2_3:58501957-58501976 | None:intergenic | 50.0% | |
| CCATCGTTGGGTTCACAGTT+CGG | + | chr2_3:58501977-58501996 | None:intergenic | 50.0% | |
| CCACTTCGTCTTCCATCGTT+GGG | + | chr2_3:58501989-58502008 | None:intergenic | 50.0% | |
| TCCACTTCGTCTTCCATCGT+TGG | + | chr2_3:58501990-58502009 | None:intergenic | 50.0% | |
| AACGATGGAAGACGAAGTGG+AGG | - | chr2_3:58501989-58502008 | Msa0301980:CDS | 50.0% | |
| GGAAGACGAAGTGGAGGAAA+TGG | - | chr2_3:58501995-58502014 | Msa0301980:CDS | 50.0% | |
| GAGAAGAATTGCACAACCGC+CGG | + | chr2_3:58502357-58502376 | None:intergenic | 50.0% | |
| CTCCTAAGTCAGCTGCAAGA+TGG | - | chr2_3:58502651-58502670 | Msa0301980:CDS | 50.0% | |
| !! | TCACTGCTTTTCCTCCAGTG+TGG | + | chr2_3:58502736-58502755 | None:intergenic | 50.0% |
| !! | AATGGGTTGGCCAAAGAGTG+TGG | + | chr2_3:58503028-58503047 | None:intergenic | 50.0% |
| CTCTTTGGCCAACCCATTCA+TGG | - | chr2_3:58503030-58503049 | Msa0301980:CDS | 50.0% | |
| ! | CTGAGTTGACAACGGCTTTG+AGG | + | chr2_3:58501911-58501930 | None:intergenic | 50.0% |
| CTCAAAGCCGTTGTCAACTC+AGG | - | chr2_3:58501909-58501928 | Msa0301980:CDS | 50.0% | |
| !! | TGTCAACTCAGGCATTGGTG+AGG | - | chr2_3:58501920-58501939 | Msa0301980:CDS | 50.0% |
| CGGCCTTCGATGAAGTTTCT+TGG | + | chr2_3:58501957-58501976 | None:intergenic | 50.0% | |
| CCATCGTTGGGTTCACAGTT+CGG | + | chr2_3:58501977-58501996 | None:intergenic | 50.0% | |
| CCACTTCGTCTTCCATCGTT+GGG | + | chr2_3:58501989-58502008 | None:intergenic | 50.0% | |
| TCCACTTCGTCTTCCATCGT+TGG | + | chr2_3:58501990-58502009 | None:intergenic | 50.0% | |
| AACGATGGAAGACGAAGTGG+AGG | - | chr2_3:58501989-58502008 | Msa0301980:CDS | 50.0% | |
| GGAAGACGAAGTGGAGGAAA+TGG | - | chr2_3:58501995-58502014 | Msa0301980:CDS | 50.0% | |
| GAGAAGAATTGCACAACCGC+CGG | + | chr2_3:58502357-58502376 | None:intergenic | 50.0% | |
| CTCCTAAGTCAGCTGCAAGA+TGG | - | chr2_3:58502651-58502670 | Msa0301980:CDS | 50.0% | |
| !! | TCACTGCTTTTCCTCCAGTG+TGG | + | chr2_3:58502736-58502755 | None:intergenic | 50.0% |
| !! | AATGGGTTGGCCAAAGAGTG+TGG | + | chr2_3:58503028-58503047 | None:intergenic | 50.0% |
| CTCTTTGGCCAACCCATTCA+TGG | - | chr2_3:58503030-58503049 | Msa0301980:CDS | 50.0% | |
| GCCGTTGTCAACTCAGGCAT+TGG | - | chr2_3:58501915-58501934 | Msa0301980:CDS | 55.0% | |
| CCGAACTGTGAACCCAACGA+TGG | - | chr2_3:58501974-58501993 | Msa0301980:CDS | 55.0% | |
| CCCAACGATGGAAGACGAAG+TGG | - | chr2_3:58501986-58502005 | Msa0301980:CDS | 55.0% | |
| GCCGTTGTCAACTCAGGCAT+TGG | - | chr2_3:58501915-58501934 | Msa0301980:CDS | 55.0% | |
| CCGAACTGTGAACCCAACGA+TGG | - | chr2_3:58501974-58501993 | Msa0301980:CDS | 55.0% | |
| CCCAACGATGGAAGACGAAG+TGG | - | chr2_3:58501986-58502005 | Msa0301980:CDS | 55.0% | |
| !! | GGGTTGGCCAAAGAGTGTGG+TGG | + | chr2_3:58503025-58503044 | None:intergenic | 60.0% |
| !! | GGGTTGGCCAAAGAGTGTGG+TGG | + | chr2_3:58503025-58503044 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 58501735 | 58503135 | 58501735 | ID=Msa0301980;Name=Msa0301980 |
| chr2_3 | mRNA | 58501735 | 58503135 | 58501735 | ID=Msa0301980-mRNA-1;Parent=Msa0301980;Name=Msa0301980-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|-1|0|1|-1|1|1|0|466 |
| chr2_3 | exon | 58501735 | 58503135 | 58501735 | ID=Msa0301980-mRNA-1:exon:18941;Parent=Msa0301980-mRNA-1 |
| chr2_3 | CDS | 58501735 | 58503135 | 58501735 | ID=Msa0301980-mRNA-1:cds;Parent=Msa0301980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
