AlfalfaGEDB | Msa0264050

M. sativa cultivar zhongmu-4 / Msa0264050

KEGG: K15397
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896
PFAM: PF08392.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0264050	XP_003597312.1	96.795	468	13	2	1	466	13	480	0.0	936

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0264050	sp\|Q9SIB2\|KCS12_ARATH	66.300	454	148	3	7	456	19	471	0.0	636

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0264050	G7IUA7	96.795	468	13	2	1	466	13	480	0.0	936

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004350	Msa0264050	0.817940	2.540126e-52	-8.615850e-47
Msa0006700	Msa0264050	0.822665	2.097900e-53	-8.615850e-47
Msa0017120	Msa0264050	0.804677	1.925509e-49	-8.615850e-47
Msa0020630	Msa0264050	0.821382	4.160295e-53	-8.615850e-47
Msa0037820	Msa0264050	0.816352	5.780639e-52	-8.615850e-47
Msa0043940	Msa0264050	0.886835	2.420258e-72	-8.615850e-47
Msa0044710	Msa0264050	0.800730	1.256381e-48	-8.615850e-47
Msa0047470	Msa0264050	0.801563	8.487701e-49	-8.615850e-47
Msa0050720	Msa0264050	0.834167	3.505573e-56	-8.615850e-47
Msa0050770	Msa0264050	0.825357	4.900034e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0264050	MtrunA17_Chr2g0327721	96.795	468	13	2	1	466	13	480	0.0	936
Msa0264050	MtrunA17_Chr4g0030601	71.335	457	120	3	1	456	13	459	0.0	707
Msa0264050	MtrunA17_Chr4g0030581	72.570	463	122	3	1	462	13	471	0.0	703
Msa0264050	MtrunA17_Chr4g0030591	70.259	464	132	3	1	462	13	472	0.0	686
Msa0264050	MtrunA17_Chr1g0212951	54.566	449	184	5	13	447	26	468	0.0	516
Msa0264050	MtrunA17_Chr7g0276251	44.186	430	221	6	14	436	117	534	1.53e-123	370
Msa0264050	MtrunA17_Chr1g0188051	41.379	435	233	8	3	432	88	505	2.05e-109	333
Msa0264050	MtrunA17_Chr1g0209881	40.553	434	238	7	3	432	72	489	2.96e-109	332
Msa0264050	MtrunA17_Chr5g0423521	41.055	436	234	7	4	432	70	489	5.47e-109	332
Msa0264050	MtrunA17_Chr4g0035081	40.000	420	232	5	15	430	96	499	5.38e-108	329

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0264050	AT2G28630.2	66.300	454	148	3	7	456	19	471	0.0	636
Msa0264050	AT2G28630.1	66.300	454	148	3	7	456	19	471	0.0	636
Msa0264050	AT1G07720.2	65.310	467	143	4	2	456	57	516	0.0	631
Msa0264050	AT1G07720.1	65.310	467	143	4	2	456	14	473	0.0	630
Msa0264050	AT5G04530.1	53.244	447	196	5	5	447	18	455	2.37e-179	510
Msa0264050	AT1G01120.1	43.192	426	212	6	15	430	118	523	4.72e-123	369
Msa0264050	AT2G46720.1	38.940	434	248	6	3	432	44	464	1.02e-111	338
Msa0264050	AT4G34510.1	41.080	426	228	5	11	430	74	482	2.03e-110	335
Msa0264050	AT1G25450.1	41.435	432	233	7	3	430	68	483	3.36e-109	332
Msa0264050	AT4G34520.1	39.723	433	226	6	15	430	73	487	3.70e-108	330

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Find 74 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGGAAGTGAACAATG+TGG	0.743662	2_2:+63904771	Msa0264050:CDS
AAAGCAGTGATAGATGGAAT+TGG	0.380405	2_2:+63905683	Msa0264050:CDS
AAAGCTCTTGTAGCTGCTTT+TGG	0.259427	2_2:-63905464	None:intergenic
AACCATCTTGCAGCTGACTT+AGG	0.502261	2_2:-63905590	None:intergenic
AACCCATTCATGGAGAAGTA+CGG	0.611169	2_2:+63905977	Msa0264050:CDS
AACCGTACTTCTCCATGAAT+GGG	0.497250	2_2:-63905979	None:intergenic
AACGATGGAAGACGAAGTGG+AGG	0.619961	2_2:+63904926	Msa0264050:CDS
AAGCAGTGATAGATGGAATT+GGG	0.433566	2_2:+63905684	Msa0264050:CDS
AAGTAGTTTGTGGTATGTGT+TGG	0.515984	2_2:+63905781	Msa0264050:CDS
AAGTCAGCTGCAAGATGGTT+TGG	0.438277	2_2:+63905593	Msa0264050:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGAAAAAATTTGATCAGAGA+AGG	+	chr2_2:63904694-63904713	Msa0264050:CDS	30.0%
TAACCATTACAAAATGAGAG+AGG	+	chr2_2:63905082-63905101	Msa0264050:CDS	30.0%
CTTAGTACAAATTGGTATTC+AGG	+	chr2_2:63905227-63905246	Msa0264050:CDS	30.0%
ATTGGTATTCAGGAAACAAT+AGG	+	chr2_2:63905237-63905256	Msa0264050:CDS	30.0%
AGTCAAAAAGAAGATGAACA+AGG	+	chr2_2:63905410-63905429	Msa0264050:CDS	30.0%
GGAAAAAATTTGATCAGAGA+AGG	+	chr2_2:63904694-63904713	Msa0264050:CDS	30.0%
TAACCATTACAAAATGAGAG+AGG	+	chr2_2:63905082-63905101	Msa0264050:CDS	30.0%
CTTAGTACAAATTGGTATTC+AGG	+	chr2_2:63905227-63905246	Msa0264050:CDS	30.0%
ATTGGTATTCAGGAAACAAT+AGG	+	chr2_2:63905237-63905256	Msa0264050:CDS	30.0%
AGTCAAAAAGAAGATGAACA+AGG	+	chr2_2:63905410-63905429	Msa0264050:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	63904672	63906072	63904672	ID=Msa0264050;Name=Msa0264050
chr2_2	mRNA	63904672	63906072	63904672	ID=Msa0264050-mRNA-1;Parent=Msa0264050;Name=Msa0264050-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|466
chr2_2	exon	63904672	63906072	63904672	ID=Msa0264050-mRNA-1:exon:19894;Parent=Msa0264050-mRNA-1
chr2_2	CDS	63904672	63906072	63904672	ID=Msa0264050-mRNA-1:cds;Parent=Msa0264050-mRNA-1

Gene Sequence

>Msa0264050

ATGCACTTGTGTTTCCTGATCTGGAAAAAATTTGATCAGAGAAGGGACCAAGAGTGTTACATATTAAACTATCAATGTTACAAGCCAAGTGATGAAAGAAAACTTGGAAGTGAACAATGTGGCAAGATTATAGGAAACAATGAGAATATTGGTCTTGATGAGTGCAAGTTCTTCCTCAAAGCCGTTGTCAACTCAGGCATTGGTGAGGAAACTTATGCTCCAAGAAACTTCATCGAAGGCCGAACTGTGAACCCAACGATGGAAGACGAAGTGGAGGAAATGGAAGAGTTTTGTAATGATAGCATTGCAAAGCTTCTAAACAAATCAGGCATTTCACCTTCGGAGATCGATATTCTTGTGGTAAATGTATCTTTATTCTCTTCTGTTCCTTCTTTAACTTCAAGAATCATTAACCATTACAAAATGAGAGAGGACATAAAAGCTTATAACCTATCTGGTATGGGTTGTAGTGCTAGTCTAATCTCATTAGACGTTATTCAAAACATTTTCAAGTCACAAAAGAACAAGTATGCTCTTTTGTTAACATCAGAGTCTCTTAGTACAAATTGGTATTCAGGAAACAATAGGTCAATGATTCTTGCAAATTGTCTTTTCCGTACCGGCGGTTGTGCAATTCTTCTCACAAATAAAAGATCCTTAAAACACAAAGCTATATTGAAGTTGAAGTGTCTAGTTAGAACTCATCATGGTGCTAGAGATGATGCTCATAACTGTTGTAGTCAAAAAGAAGATGAACAAGGTAAACTTGGTTTTTACCTAGCTAAAGATCTTCCAAAAGCAGCTACAAGAGCTTTTACTGATAATTTAAGGGTGTTATCACCTAAAATTTTACCAGCTAGGGAAATATTTAGGTATATGCTTATGTCACTCATAAAAAAAGTGATAAAATATTTTGCTCCTAAGTCAGCTGCAAGATGGTTTGGAACAAGTAACAAATCACCAGTGAATTTCAAAACAGGTGTTGATCATTTTGTTCTTCACACTGGAGGAAAAGCAGTGATAGATGGAATTGGGATGAGTTTAGATCTGAATGATTATGACCTAGAACCAGCAAGAATGTCATTACATAGATTTGGTAATACATCAGCAAGTAGTTTGTGGTATGTGTTGGGGTATATGGAAGCTAAGAAGAGGTTGAAAAAAGGTGAGAGAGTATTGATGATAAGTTTAGGTGCTGGCTTTAAATGCAACAGTTGTTATTGGGAAGTAATGAGAGATGTTGTTGGTGACGATGGAAATGTGTGGGACGATTGCATTGATTACTATCCACCACACTCTTTGGCCAACCCATTCATGGAGAAGTACGGTTGGATCAACAATATTCAAGATCCAAACACTTTCAAACTCAAACTTGCTGAGTTTCTTCTCAGTCTTAAGTGA

Protein sequence

>Msa0264050

MHLCFLIWKKFDQRRDQECYILNYQCYKPSDERKLGSEQCGKIIGNNENIGLDECKFFLKAVVNSGIGEETYAPRNFIEGRTVNPTMEDEVEEMEEFCNDSIAKLLNKSGISPSEIDILVVNVSLFSSVPSLTSRIINHYKMREDIKAYNLSGMGCSASLISLDVIQNIFKSQKNKYALLLTSESLSTNWYSGNNRSMILANCLFRTGGCAILLTNKRSLKHKAILKLKCLVRTHHGARDDAHNCCSQKEDEQGKLGFYLAKDLPKAATRAFTDNLRVLSPKILPAREIFRYMLMSLIKKVIKYFAPKSAARWFGTSNKSPVNFKTGVDHFVLHTGGKAVIDGIGMSLDLNDYDLEPARMSLHRFGNTSASSLWYVLGYMEAKKRLKKGERVLMISLGAGFKCNSCYWEVMRDVVGDDGNVWDDCIDYYPPHSLANPFMEKYGWINNIQDPNTFKLKLAEFLLSLK*