Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1067040 | XP_024626263.2 | 97.678 | 603 | 14 | 0 | 1 | 603 | 1 | 603 | 0.0 | 1225 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1067040 | sp|Q9FFT4|PDC2_ARATH | 84.236 | 609 | 88 | 3 | 1 | 603 | 1 | 607 | 0.0 | 1072 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1067040 | A0A396H177 | 97.678 | 603 | 14 | 0 | 1 | 603 | 1 | 603 | 0.0 | 1225 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0650550 | Msa1067040 | 0.811050 | 8.497615e-51 | -8.615850e-47 |
Msa0735340 | Msa1067040 | 0.814038 | 1.887976e-51 | -8.615850e-47 |
Msa0777210 | Msa1067040 | 0.803330 | 3.670987e-49 | -8.615850e-47 |
Msa0814350 | Msa1067040 | 0.811213 | 7.834064e-51 | -8.615850e-47 |
Msa0192890 | Msa1067040 | 0.838227 | 3.260266e-57 | -8.615850e-47 |
Msa0235020 | Msa1067040 | 0.807830 | 4.173891e-50 | -8.615850e-47 |
Msa1067040 | Msa1074490 | 0.818122 | 2.311343e-52 | -8.615850e-47 |
Msa1067040 | Msa1085580 | -0.814766 | 1.303281e-51 | -8.615850e-47 |
Msa1067040 | Msa1085820 | 0.801852 | 7.405132e-49 | -8.615850e-47 |
Msa1067040 | Msa1108960 | 0.849200 | 3.766283e-60 | -8.615850e-47 |
Msa1067040 | Msa1115000 | 0.805351 | 1.392169e-49 | -8.615850e-47 |
Msa1067040 | Msa1162050 | 0.809748 | 1.623419e-50 | -8.615850e-47 |
Msa1067040 | Msa1211320 | 0.837294 | 5.657379e-57 | -8.615850e-47 |
Msa1067040 | Msa1259570 | 0.804158 | 2.470823e-49 | -8.615850e-47 |
Msa1067040 | Msa1263370 | 0.815737 | 7.929744e-52 | -8.615850e-47 |
Msa1067040 | Msa1335500 | 0.808346 | 3.240355e-50 | -8.615850e-47 |
Msa1067040 | Msa1344460 | 0.801910 | 7.204137e-49 | -8.615850e-47 |
Msa1067040 | Msa1362520 | 0.822984 | 1.767958e-53 | -8.615850e-47 |
Msa1067040 | Msa1450710 | 0.855996 | 4.334638e-62 | -8.615850e-47 |
Msa0273420 | Msa1067040 | 0.815671 | 8.204052e-52 | -8.615850e-47 |
Msa0313680 | Msa1067040 | 0.826543 | 2.561485e-54 | -8.615850e-47 |
Msa0579520 | Msa1067040 | 0.814431 | 1.545792e-51 | -8.615850e-47 |
Msa0866510 | Msa1067040 | -0.803493 | 3.395293e-49 | -8.615850e-47 |
Msa0948430 | Msa1067040 | 0.801399 | 9.172169e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1067040 | MtrunA17_Chr7g0242961 | 97.678 | 603 | 14 | 0 | 1 | 603 | 1 | 603 | 0.0 | 1225 |
Msa1067040 | MtrunA17_Chr7g0242981 | 89.421 | 605 | 46 | 3 | 1 | 603 | 1 | 589 | 0.0 | 1099 |
Msa1067040 | MtrunA17_Chr4g0007071 | 85.832 | 607 | 82 | 3 | 1 | 603 | 1 | 607 | 0.0 | 1071 |
Msa1067040 | MtrunA17_Chr5g0420011 | 85.502 | 607 | 84 | 3 | 1 | 603 | 1 | 607 | 0.0 | 1068 |
Msa1067040 | MtrunA17_Chr2g0283471 | 82.155 | 566 | 101 | 0 | 38 | 603 | 17 | 582 | 0.0 | 987 |
Msa1067040 | MtrunA17_Chr2g0279461 | 59.109 | 247 | 67 | 2 | 10 | 228 | 25 | 265 | 1.79e-97 | 298 |
Msa1067040 | MtrunA17_Chr2g0279471 | 71.552 | 116 | 33 | 0 | 485 | 600 | 17 | 132 | 1.62e-53 | 179 |
Msa1067040 | MtrunA17_Chr3g0132201 | 23.723 | 548 | 359 | 20 | 19 | 531 | 47 | 570 | 9.30e-18 | 87.0 |
Msa1067040 | MtrunA17_Chr2g0281881 | 22.426 | 544 | 357 | 17 | 27 | 531 | 57 | 574 | 9.67e-16 | 80.9 |
Msa1067040 | MtrunA17_Chr2g0290681 | 22.842 | 556 | 353 | 18 | 47 | 558 | 67 | 590 | 1.74e-14 | 76.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1067040 | AT5G54960.1 | 84.236 | 609 | 88 | 3 | 1 | 603 | 1 | 607 | 0.0 | 1072 |
Msa1067040 | AT4G33070.1 | 84.893 | 609 | 84 | 2 | 1 | 603 | 1 | 607 | 0.0 | 1071 |
Msa1067040 | AT5G01320.1 | 83.444 | 604 | 98 | 2 | 1 | 603 | 1 | 603 | 0.0 | 1055 |
Msa1067040 | AT5G01330.1 | 82.550 | 596 | 100 | 1 | 8 | 603 | 1 | 592 | 0.0 | 1028 |
Msa1067040 | AT5G17380.1 | 24.351 | 501 | 309 | 18 | 47 | 509 | 18 | 486 | 1.07e-17 | 87.0 |
Msa1067040 | AT3G48560.1 | 22.612 | 513 | 343 | 15 | 47 | 531 | 103 | 589 | 1.82e-13 | 73.9 |
Find 191 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTGGTGATGGAAGCTTTC+AGG | 0.099113 | 7_2:-61243160 | Msa1067040:intron |
CCCATTTCATTGGAACTTAT+TGG | 0.122987 | 7_2:-61243794 | Msa1067040:CDS |
TAAAAGTAAAATCATCTAAA+AGG | 0.208969 | 7_2:+61242530 | None:intergenic |
CCATTTCATTGGAACTTATT+GGG | 0.218907 | 7_2:-61243793 | Msa1067040:CDS |
GGACCCAATTCTAATGATTA+TGG | 0.232316 | 7_2:-61245523 | Msa1067040:CDS |
TTTGAAGTTTACTGAGGATT+TGG | 0.247792 | 7_2:+61242610 | None:intergenic |
AGGGGTTATTATATACTAAA+AGG | 0.265507 | 7_2:+61246083 | None:intergenic |
AAACATAAGCTATCTTTCTT+TGG | 0.266263 | 7_2:+61242718 | None:intergenic |
TTTGATGGATATTTAAAGTA+TGG | 0.270139 | 7_2:+61245994 | None:intergenic |
TTAACTCTCAAAGGTTCTTT+TGG | 0.273563 | 7_2:+61243477 | None:intergenic |
CCCAATAAGTTCCAATGAAA+TGG | 0.289567 | 7_2:+61243793 | None:intergenic |
TGTATCCTCCATTGTTTATC+AGG | 0.289927 | 7_2:+61242987 | None:intergenic |
ATTCAGTCACTTGAGATAAA+TGG | 0.298734 | 7_2:-61242459 | Msa1067040:three_prime_UTR |
TTGAAGTTTACTGAGGATTT+GGG | 0.311340 | 7_2:+61242611 | None:intergenic |
GATCGGGTTGTGGTTGCTAA+TGG | 0.314935 | 7_2:-61243630 | Msa1067040:CDS |
GTGTTGTTACTTTCACTGTT+GGG | 0.331580 | 7_2:-61245615 | Msa1067040:CDS |
TTTGTGGTTTAACGTGGAAA+TGG | 0.344615 | 7_2:+61246048 | None:intergenic |
CAAATGCAATATGGTTCAAT+TGG | 0.346194 | 7_2:-61243246 | Msa1067040:CDS |
AGGATTCTTCATCATACTAT+TGG | 0.352361 | 7_2:-61245493 | Msa1067040:CDS |
AGTGTTCTTAATGCTATTGC+TGG | 0.356020 | 7_2:-61245586 | Msa1067040:CDS |
GTTGCTAATGGACCTGCATT+TGG | 0.356868 | 7_2:-61243618 | Msa1067040:CDS |
AACAAAATGTCCACAATGTT+AGG | 0.362479 | 7_2:-61245940 | Msa1067040:exon |
AGTCCCATAATCATTAGAAT+TGG | 0.362617 | 7_2:+61245519 | None:intergenic |
CAAGCAATCACTCGCTTCTC+GGG | 0.364950 | 7_2:+61243183 | None:intergenic |
TATGAGTTTCAAATGCAATA+TGG | 0.365373 | 7_2:-61243255 | Msa1067040:CDS |
ATGAAATGGGGATGGTGCTC+AGG | 0.369145 | 7_2:+61243807 | None:intergenic |
CATGAAACGACGTCGTTGTT+TGG | 0.370477 | 7_2:+61245895 | None:intergenic |
CAGCCAATGCTTATATAAAC+AGG | 0.374707 | 7_2:+61244454 | None:intergenic |
CAGTTCTTGATAACATTGTA+TGG | 0.391023 | 7_2:+61242938 | None:intergenic |
CCAATAAGTTCCAATGAAAT+GGG | 0.391316 | 7_2:+61243794 | None:intergenic |
TTGCCGCTTATTTGTATTGT+TGG | 0.393601 | 7_2:-61245547 | Msa1067040:CDS |
GACGCTTTGCAAGTGCCTTT+AGG | 0.393990 | 7_2:+61243574 | None:intergenic |
GAGCACCATCCCCATTTCAT+TGG | 0.394834 | 7_2:-61243804 | Msa1067040:CDS |
GCAAGCAATCACTCGCTTCT+CGG | 0.396937 | 7_2:+61243182 | None:intergenic |
GAAGCAATTGCCACAGCAAC+AGG | 0.397655 | 7_2:-61242742 | Msa1067040:CDS |
CTAATGATTATGGGACTAGT+AGG | 0.404499 | 7_2:-61245513 | Msa1067040:CDS |
ACCGACGTCTTCTCCGTTCC+CGG | 0.411535 | 7_2:-61245766 | Msa1067040:CDS |
TTGAAATTGCCCGAGGGATG+TGG | 0.415847 | 7_2:-61243366 | Msa1067040:CDS |
AGTTGCTTGAGTGGGGCTCC+AGG | 0.424677 | 7_2:-61242657 | Msa1067040:CDS |
TTTAATGACTACAGCTCTGT+TGG | 0.425890 | 7_2:-61243699 | Msa1067040:CDS |
GGAAATGGGAAGAGACTAAG+AGG | 0.431478 | 7_2:+61246063 | None:intergenic |
GGGGTTATTATATACTAAAA+GGG | 0.433558 | 7_2:+61246084 | None:intergenic |
CAGGAGGCGATCGCGGTGGC+TGG | 0.435574 | 7_2:+61245841 | None:intergenic |
GACCCAATTCTAATGATTAT+GGG | 0.436897 | 7_2:-61245522 | Msa1067040:CDS |
GGGTTATTATATACTAAAAG+GGG | 0.441988 | 7_2:+61246085 | None:intergenic |
TTGTGGTTTAACGTGGAAAT+GGG | 0.442454 | 7_2:+61246049 | None:intergenic |
ATTGTTTATCAGGAAGATGA+TGG | 0.443596 | 7_2:+61242997 | None:intergenic |
CCTGGTATCTTCTTCAATAC+AGG | 0.447009 | 7_2:-61246189 | Msa1067040:five_prime_UTR |
TGTGTTGTTACTTTCACTGT+TGG | 0.449760 | 7_2:-61245616 | Msa1067040:CDS |
CATACAATGTTATCAAGAAC+TGG | 0.450936 | 7_2:-61242937 | Msa1067040:CDS |
CTCAACTCCTGACTAAAATC+AGG | 0.453988 | 7_2:+61245466 | None:intergenic |
AGGCGATCGCGGTGGCTGGT+TGG | 0.460812 | 7_2:+61245845 | None:intergenic |
GTCCCATAATCATTAGAATT+GGG | 0.462038 | 7_2:+61245520 | None:intergenic |
TACTTGGGAGCGAGTGAGAA+AGG | 0.464104 | 7_2:+61244385 | None:intergenic |
ATCAAAATGCATCCAAATGC+AGG | 0.464273 | 7_2:+61243606 | None:intergenic |
CATTGAAGTGATTGTTCACA+AGG | 0.466013 | 7_2:-61242695 | Msa1067040:CDS |
TGACGCCGACTTGGACTAAT+CGG | 0.473049 | 7_2:+61245788 | None:intergenic |
CAATCATTGTGCAGCCCGAT+CGG | 0.474852 | 7_2:-61243647 | Msa1067040:CDS |
TGGTCTGTTGGTGCAACTCT+TGG | 0.476946 | 7_2:-61243222 | Msa1067040:CDS |
CCGTGATGCCATCAGCTAAA+GGG | 0.477384 | 7_2:-61243836 | Msa1067040:CDS |
CATTTCATTGGAACTTATTG+GGG | 0.478426 | 7_2:-61243792 | Msa1067040:CDS |
TTAGGACCACCTACTAGTAC+AGG | 0.482399 | 7_2:+61243924 | None:intergenic |
TGTTGTTACTTTCACTGTTG+GGG | 0.483644 | 7_2:-61245614 | Msa1067040:CDS |
TTTGATGAAGGATTTCCTAA+AGG | 0.483996 | 7_2:-61243589 | Msa1067040:CDS |
CCGCTTATTTGTATTGTTGG+TGG | 0.484728 | 7_2:-61245544 | Msa1067040:CDS |
GGTTATTATATACTAAAAGG+GGG | 0.485038 | 7_2:+61246086 | None:intergenic |
TGCAATATGGTTCAATTGGA+TGG | 0.486831 | 7_2:-61243242 | Msa1067040:CDS |
AAAAGTAAAATCATCTAAAA+GGG | 0.489463 | 7_2:+61242531 | None:intergenic |
TTAATGACTACAGCTCTGTT+GGG | 0.491232 | 7_2:-61243698 | Msa1067040:CDS |
GTTATTATATACTAAAAGGG+GGG | 0.491386 | 7_2:+61246087 | None:intergenic |
GACAGGATCACGACTGAAAG+TGG | 0.492188 | 7_2:+61244408 | None:intergenic |
CGACCATCTCGTCAATGAAC+CGG | 0.492546 | 7_2:-61245722 | Msa1067040:CDS |
AATCATTGTGCAGCCCGATC+GGG | 0.492725 | 7_2:-61243646 | Msa1067040:CDS |
GCTGACGCATACTTGTTTGC+CGG | 0.493130 | 7_2:-61243729 | Msa1067040:CDS |
GCCGTGATGCCATCAGCTAA+AGG | 0.496857 | 7_2:-61243837 | Msa1067040:CDS |
ACAGCATCTGTTGTATATGT+TGG | 0.501632 | 7_2:+61243445 | None:intergenic |
ATCGCGGTGGCTGGTTGGAT+CGG | 0.502733 | 7_2:+61245850 | None:intergenic |
GAACACTTACCCACATCCCT+CGG | 0.502879 | 7_2:+61243356 | None:intergenic |
GCAGTAAAACCTGTACTAGT+AGG | 0.506078 | 7_2:-61243933 | Msa1067040:CDS |
ATCATGAATTTCAACCTCAA+TGG | 0.506430 | 7_2:+61242964 | None:intergenic |
ACTGCTGTAATTGCTGAGAC+AGG | 0.507925 | 7_2:-61243414 | Msa1067040:CDS |
AGCATTGGCTGTAACTTGCC+TGG | 0.508186 | 7_2:-61244442 | Msa1067040:CDS |
AGACGTCGGTGACGCCGACT+TGG | 0.509266 | 7_2:+61245779 | None:intergenic |
TTGCTGAGACAGGGGACTCA+TGG | 0.509451 | 7_2:-61243404 | Msa1067040:CDS |
CATAGGATATTTGTCCCAGA+TGG | 0.511574 | 7_2:-61243519 | Msa1067040:CDS |
TGCTGTAACGAGCTGAATGC+AGG | 0.513314 | 7_2:-61245682 | Msa1067040:CDS |
TGTGCAGCCCGATCGGGTTG+TGG | 0.514001 | 7_2:-61243640 | Msa1067040:CDS |
CGAGATGGTCGAGGAGGGTG+AGG | 0.514495 | 7_2:+61245734 | None:intergenic |
GGTTCAATTGGATGGTCTGT+TGG | 0.514958 | 7_2:-61243234 | Msa1067040:CDS |
TTAGCAACCACAACCCGATC+GGG | 0.517431 | 7_2:+61243633 | None:intergenic |
AAGCCTGTTTATATAAGCAT+TGG | 0.517974 | 7_2:-61244457 | Msa1067040:CDS |
TTATTATATACTAAAAGGGG+GGG | 0.518709 | 7_2:+61246088 | None:intergenic |
GCTATTGGCAGCAGAGACCC+TGG | 0.518971 | 7_2:+61242639 | None:intergenic |
GAGGGTGAGGTTGAAGTCGC+CGG | 0.518981 | 7_2:+61245747 | None:intergenic |
ATTGAGGTTGAAATTCATGA+TGG | 0.521307 | 7_2:-61242962 | Msa1067040:CDS |
AACACTTACCCACATCCCTC+GGG | 0.524155 | 7_2:+61243357 | None:intergenic |
AACATAACATTAACTCTCAA+AGG | 0.524430 | 7_2:+61243468 | None:intergenic |
TTATTGGGGTGCTGTGAGTA+CGG | 0.525149 | 7_2:-61243778 | Msa1067040:CDS |
GTTGCTTGAGTGGGGCTCCA+GGG | 0.527600 | 7_2:-61242656 | Msa1067040:CDS |
GTTTAGTTTGTGGTTTAACG+TGG | 0.531113 | 7_2:+61246042 | None:intergenic |
GAGGTTGAAGTCGCCGGGAA+CGG | 0.536503 | 7_2:+61245753 | None:intergenic |
CAAGCAAAGAGTTGCTTGAG+TGG | 0.539180 | 7_2:-61242666 | Msa1067040:CDS |
TTTCTTTGGTCCTGTTGCTG+TGG | 0.540855 | 7_2:+61242732 | None:intergenic |
CATCTGGGACAAATATCCTA+TGG | 0.541696 | 7_2:+61243520 | None:intergenic |
AAGCAAAGAGTTGCTTGAGT+GGG | 0.543213 | 7_2:-61242665 | Msa1067040:CDS |
GGAGCGAGTGAGAAAGGGAC+AGG | 0.543798 | 7_2:+61244391 | None:intergenic |
ATAGTGATGGAATGGAAAGT+TGG | 0.544516 | 7_2:+61246129 | None:intergenic |
TATGCTCGGTCACGTGGTGT+CGG | 0.546337 | 7_2:-61245643 | Msa1067040:CDS |
TTGATGAAAAGTTTAGTTTG+TGG | 0.548420 | 7_2:+61246032 | None:intergenic |
GTAAGACAGTGGGAGGTACA+TGG | 0.550366 | 7_2:+61246157 | None:intergenic |
GTGATTGCTTGCATTGGTGA+TGG | 0.552907 | 7_2:-61243171 | Msa1067040:CDS |
GCGGCCGAGTGTAGCGTCGC+AGG | 0.553256 | 7_2:+61245822 | None:intergenic |
ACTTGGGAGCGAGTGAGAAA+GGG | 0.553381 | 7_2:+61244386 | None:intergenic |
ATAGGCTGTGGTGAATAACT+TGG | 0.556113 | 7_2:-61244533 | Msa1067040:intron |
AGTTGGTAAGAGTAAGACAG+TGG | 0.558764 | 7_2:+61246146 | None:intergenic |
GGACTAATCGGCGTGCGAGA+TGG | 0.559516 | 7_2:+61245800 | None:intergenic |
GCCTCCTGCGACGCTACACT+CGG | 0.559561 | 7_2:-61245826 | Msa1067040:CDS |
ACTTCTTCTCAAGAAAGAGA+AGG | 0.560019 | 7_2:-61243670 | Msa1067040:CDS |
CCTGTATTGAAGAAGATACC+AGG | 0.560026 | 7_2:+61246189 | None:intergenic |
AGGGTGAGGTTGAAGTCGCC+GGG | 0.560296 | 7_2:+61245748 | None:intergenic |
TGAAGTTTACTGAGGATTTG+GGG | 0.562893 | 7_2:+61242612 | None:intergenic |
TGCTTTACAGGTAACTGCAC+AGG | 0.563537 | 7_2:-61243053 | Msa1067040:intron |
TGAAATTGCCCGAGGGATGT+GGG | 0.564901 | 7_2:-61243365 | Msa1067040:intron |
GAAATGAGATAGTGATGGAA+TGG | 0.565338 | 7_2:+61246121 | None:intergenic |
TGCTGTAATTGCTGAGACAG+GGG | 0.567658 | 7_2:-61243412 | Msa1067040:CDS |
TGAAATGGGGATGGTGCTCA+GGG | 0.568384 | 7_2:+61243808 | None:intergenic |
ATTAGCAACCACAACCCGAT+CGG | 0.569214 | 7_2:+61243632 | None:intergenic |
GGGACCATCCCTTTAGCTGA+TGG | 0.572399 | 7_2:+61243828 | None:intergenic |
ATTGAGTAACCACATGGGGT+TGG | 0.573467 | 7_2:-61243994 | Msa1067040:CDS |
ATCATCTTCCTGATAAACAA+TGG | 0.575164 | 7_2:-61242995 | Msa1067040:CDS |
CCCTTTAGCTGATGGCATCA+CGG | 0.575591 | 7_2:+61243836 | None:intergenic |
CTGCCTATGAAAATTACCAT+AGG | 0.576792 | 7_2:-61243536 | Msa1067040:CDS |
GTTGGTAAGAGTAAGACAGT+GGG | 0.577661 | 7_2:+61246147 | None:intergenic |
GCTCCGGTTCATTGACGAGA+TGG | 0.581139 | 7_2:+61245719 | None:intergenic |
GATGCAATTCACAATGGTGA+AGG | 0.582372 | 7_2:-61242896 | Msa1067040:CDS |
CTGCTGTAATTGCTGAGACA+GGG | 0.583448 | 7_2:-61243413 | Msa1067040:CDS |
GACGGTTATGCTCGGTCACG+TGG | 0.584252 | 7_2:-61245649 | Msa1067040:CDS |
GTCGAACTAGCTGATGCAAG+TGG | 0.587023 | 7_2:-61243870 | Msa1067040:CDS |
AAGCGAGTGATTGCTTGCAT+TGG | 0.587132 | 7_2:-61243177 | Msa1067040:CDS |
TCACGACTGAAAGTGGGATG+AGG | 0.587384 | 7_2:+61244415 | None:intergenic |
ATCAAGAACTGGAATTACAC+TGG | 0.587582 | 7_2:-61242926 | Msa1067040:CDS |
ATCTAAAGATCCTAACATTG+TGG | 0.588263 | 7_2:+61245930 | None:intergenic |
ATGCGGCTGACGGTTATGCT+CGG | 0.592533 | 7_2:-61245657 | Msa1067040:CDS |
AAAGTGGGATGAGGAATACC+AGG | 0.593405 | 7_2:+61244424 | None:intergenic |
CAACCGATGAGGTTCAGCTC+CGG | 0.593930 | 7_2:+61245703 | None:intergenic |
CGAGCTGAATGCAGGTTATG+CGG | 0.594358 | 7_2:-61245674 | Msa1067040:CDS |
GAACCGGAGCTGAACCTCAT+CGG | 0.594651 | 7_2:-61245706 | Msa1067040:CDS |
TTGTAGATTGAGTAACCACA+TGG | 0.603932 | 7_2:-61244000 | Msa1067040:intron |
ACAATGGTGAAGGAAAATGT+TGG | 0.606866 | 7_2:-61242886 | Msa1067040:CDS |
GTTCATTGACGAGATGGTCG+AGG | 0.607447 | 7_2:+61245725 | None:intergenic |
AAGTTCCAATGAAATGGGGA+TGG | 0.619469 | 7_2:+61243799 | None:intergenic |
AGCGTCGCAGGAGGCGATCG+CGG | 0.619577 | 7_2:+61245834 | None:intergenic |
AGGAAAATGTTGGACAACCA+AGG | 0.622216 | 7_2:-61242876 | Msa1067040:intron |
GTTGTTACTTTCACTGTTGG+GGG | 0.623451 | 7_2:-61245613 | Msa1067040:CDS |
AGCAAAGAGTTGCTTGAGTG+GGG | 0.625045 | 7_2:-61242664 | Msa1067040:CDS |
GACACTGTTACTTAGTCCCT+AGG | 0.626843 | 7_2:-61242328 | Msa1067040:three_prime_UTR |
AATGCAGGTTATGCGGCTGA+CGG | 0.628000 | 7_2:-61245667 | Msa1067040:CDS |
AGTAGGTGGTCCTAAACTGA+GGG | 0.628023 | 7_2:-61243916 | Msa1067040:CDS |
GAAGTTTACTGAGGATTTGG+GGG | 0.630194 | 7_2:+61242613 | None:intergenic |
TTGTTACTTTCACTGTTGGG+GGG | 0.638206 | 7_2:-61245612 | Msa1067040:CDS |
ATTGACGAGATGGTCGAGGA+GGG | 0.639532 | 7_2:+61245729 | None:intergenic |
GCACGCCGATTAGTCCAAGT+CGG | 0.645813 | 7_2:-61245793 | Msa1067040:CDS |
CTGCTGCTTCCAACCCCATG+TGG | 0.646622 | 7_2:+61243985 | None:intergenic |
CATTGACGAGATGGTCGAGG+AGG | 0.646882 | 7_2:+61245728 | None:intergenic |
ACTGACTTTGAAGTTTACTG+AGG | 0.647423 | 7_2:+61242604 | None:intergenic |
TGCATCAGCTAGTTCGACAA+AGG | 0.650364 | 7_2:+61243875 | None:intergenic |
TAGTAGGTGGTCCTAAACTG+AGG | 0.652385 | 7_2:-61243917 | Msa1067040:CDS |
ACAGGATCACGACTGAAAGT+GGG | 0.654306 | 7_2:+61244409 | None:intergenic |
GGTAAGAGTAAGACAGTGGG+AGG | 0.655254 | 7_2:+61246150 | None:intergenic |
AAGCAATCACTCGCTTCTCG+GGG | 0.655548 | 7_2:+61243184 | None:intergenic |
AGGTGGTCCTAAACTGAGGG+TGG | 0.656562 | 7_2:-61243913 | Msa1067040:CDS |
CCACCAACAATACAAATAAG+CGG | 0.658046 | 7_2:+61245544 | None:intergenic |
GATGCCATCAGCTAAAGGGA+TGG | 0.659243 | 7_2:-61243832 | Msa1067040:CDS |
CAATAAGTTCCAATGAAATG+GGG | 0.661557 | 7_2:+61243795 | None:intergenic |
GGGGTTGGAAGCAGCAGTTG+AGG | 0.663030 | 7_2:-61243979 | Msa1067040:CDS |
GTAGATTGAGTAACCACATG+GGG | 0.665962 | 7_2:-61243998 | Msa1067040:intron |
CTGTATTGAAGAAGATACCA+GGG | 0.668995 | 7_2:+61246190 | None:intergenic |
GTCGCAGGAGGCGATCGCGG+TGG | 0.669288 | 7_2:+61245837 | None:intergenic |
ATCTTCCTGATAAACAATGG+AGG | 0.670205 | 7_2:-61242992 | Msa1067040:CDS |
GTAAAACCTGTACTAGTAGG+TGG | 0.676238 | 7_2:-61243930 | Msa1067040:CDS |
TTGATTGATGCAATTCACAA+TGG | 0.677426 | 7_2:-61242902 | Msa1067040:CDS |
AAATGGGAAGAGACTAAGAG+GGG | 0.678158 | 7_2:+61246065 | None:intergenic |
CAATGGAGGATACACCATTG+AGG | 0.679792 | 7_2:-61242978 | Msa1067040:CDS |
TGTAGATTGAGTAACCACAT+GGG | 0.679957 | 7_2:-61243999 | Msa1067040:intron |
GAAATGGGAAGAGACTAAGA+GGG | 0.684252 | 7_2:+61246064 | None:intergenic |
GCTCGTTACAGCAACCGATG+AGG | 0.687230 | 7_2:+61245692 | None:intergenic |
GTTGTGAAATGAGATAGTGA+TGG | 0.693358 | 7_2:+61246116 | None:intergenic |
GTGTCGACAATGCTGCGATG+TGG | 0.703073 | 7_2:-61243028 | Msa1067040:CDS |
GGTGGCTGGTTGGATCGGAG+AGG | 0.716934 | 7_2:+61245855 | None:intergenic |
GCCGGGAACGGAGAAGACGT+CGG | 0.741181 | 7_2:+61245765 | None:intergenic |
TGTATTGAAGAAGATACCAG+GGG | 0.756921 | 7_2:+61246191 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAGTAAAATCATCTAAAA+GGG | + | chr7_2:61245971-61245990 | None:intergenic | 15.0% |
!! | TAAAAGTAAAATCATCTAAA+AGG | + | chr7_2:61245972-61245991 | None:intergenic | 15.0% |
!!! | TTTGATGGATATTTAAAGTA+TGG | + | chr7_2:61242508-61242527 | None:intergenic | 20.0% |
!!! | TTTTTGAAGTATAGTTTTGA+TGG | + | chr7_2:61242523-61242542 | None:intergenic | 20.0% |
!!! | TTGCTAAATTTGTAGTTTTT+TGG | - | chr7_2:61243093-61243112 | Msa1067040:intron | 20.0% |
!!! | GCTAAAATTACTACAATTTT+AGG | + | chr7_2:61243510-61243529 | None:intergenic | 20.0% |
!!! | AAAATTGTAGTAATTTTAGC+TGG | - | chr7_2:61243510-61243529 | Msa1067040:CDS | 20.0% |
!! | TAAAATCATGGTAATTTAAG+CGG | - | chr7_2:61243839-61243858 | Msa1067040:CDS | 20.0% |
!!! | TCTCAATTTTTAGAATCAAA+TGG | + | chr7_2:61245947-61245966 | None:intergenic | 20.0% |
!!! | GATGATTTTACTTTTATTGA+TGG | - | chr7_2:61245976-61245995 | Msa1067040:five_prime_UTR | 20.0% |
! | TTATTATATACTAAAAGGGG+GGG | + | chr7_2:61242414-61242433 | None:intergenic | 25.0% |
! | GTTATTATATACTAAAAGGG+GGG | + | chr7_2:61242415-61242434 | None:intergenic | 25.0% |
! | GGTTATTATATACTAAAAGG+GGG | + | chr7_2:61242416-61242435 | None:intergenic | 25.0% |
! | GGGTTATTATATACTAAAAG+GGG | + | chr7_2:61242417-61242436 | None:intergenic | 25.0% |
! | GGGGTTATTATATACTAAAA+GGG | + | chr7_2:61242418-61242437 | None:intergenic | 25.0% |
! | AGGGGTTATTATATACTAAA+AGG | + | chr7_2:61242419-61242438 | None:intergenic | 25.0% |
!!! | TTGATGAAAAGTTTAGTTTG+TGG | + | chr7_2:61242470-61242489 | None:intergenic | 25.0% |
!!! | TTTTTGCTTTTGCAAAATCA+TGG | - | chr7_2:61243353-61243372 | Msa1067040:intron | 25.0% |
! | TCAAACATGTAATGTATGTT+TGG | + | chr7_2:61243760-61243779 | None:intergenic | 25.0% |
! | TACATTACATGTTTGAATTG+AGG | - | chr7_2:61243764-61243783 | Msa1067040:CDS | 25.0% |
!! | GCTTAAATTACCATGATTTT+AGG | + | chr7_2:61243840-61243859 | None:intergenic | 25.0% |
! | AAAATCATGGTAATTTAAGC+GGG | - | chr7_2:61243840-61243859 | Msa1067040:CDS | 25.0% |
! | AAATAGAGAAAGACTTACTT+GGG | + | chr7_2:61244132-61244151 | None:intergenic | 25.0% |
! | TTCAAATCATACAAAGAATC+TGG | - | chr7_2:61244199-61244218 | Msa1067040:intron | 25.0% |
!!! | AGGCTAGTTTTTGTTAAAAT+CGG | - | chr7_2:61244350-61244369 | Msa1067040:intron | 25.0% |
! | TCATCAACATTTCCAATAAT+CGG | + | chr7_2:61244452-61244471 | None:intergenic | 25.0% |
!! | TATCCTATGGTAATTTTCAT+AGG | + | chr7_2:61244969-61244988 | None:intergenic | 25.0% |
! | AACATAACATTAACTCTCAA+AGG | + | chr7_2:61245034-61245053 | None:intergenic | 25.0% |
! | TATGAGTTTCAAATGCAATA+TGG | - | chr7_2:61245244-61245263 | Msa1067040:intron | 25.0% |
! | AAACATAAGCTATCTTTCTT+TGG | + | chr7_2:61245784-61245803 | None:intergenic | 25.0% |
!! | TTGGGTTTTTAATATACCTA+GGG | + | chr7_2:61246190-61246209 | None:intergenic | 25.0% |
!!! | TTTGGGTTTTTAATATACCT+AGG | + | chr7_2:61246191-61246210 | None:intergenic | 25.0% |
AACAAAATGTCCACAATGTT+AGG | - | chr7_2:61242559-61242578 | Msa1067040:three_prime_UTR | 30.0% | |
ATCTAAAGATCCTAACATTG+TGG | + | chr7_2:61242572-61242591 | None:intergenic | 30.0% | |
GACCCAATTCTAATGATTAT+GGG | - | chr7_2:61242977-61242996 | Msa1067040:CDS | 30.0% | |
GTCCCATAATCATTAGAATT+GGG | + | chr7_2:61242982-61243001 | None:intergenic | 30.0% | |
AGTCCCATAATCATTAGAAT+TGG | + | chr7_2:61242983-61243002 | None:intergenic | 30.0% | |
AGGATTCTTCATCATACTAT+TGG | - | chr7_2:61243006-61243025 | Msa1067040:CDS | 30.0% | |
GTTTATTGTGTTTGTGAAGT+TGG | - | chr7_2:61243149-61243168 | Msa1067040:intron | 30.0% | |
TCAAACATGTAGTGTATGTT+TGG | + | chr7_2:61243417-61243436 | None:intergenic | 30.0% | |
CATACACTACATGTTTGAAT+TGG | - | chr7_2:61243419-61243438 | Msa1067040:CDS | 30.0% | |
TACACTATCAAACTAACTAG+TGG | - | chr7_2:61243533-61243552 | Msa1067040:CDS | 30.0% | |
! | ATGATTTTGCAAAATCACAG+TGG | + | chr7_2:61243701-61243720 | None:intergenic | 30.0% |
! | ACTGTGATTTTGCAAAATCA+TGG | - | chr7_2:61243700-61243719 | Msa1067040:CDS | 30.0% |
TGTACATTGTCCTAAAATCA+TGG | - | chr7_2:61243827-61243846 | Msa1067040:CDS | 30.0% | |
TGCACTTAGTTGTTGTAAAA+TGG | - | chr7_2:61243906-61243925 | Msa1067040:CDS | 30.0% | |
GCACTTAGTTGTTGTAAAAT+GGG | - | chr7_2:61243907-61243926 | Msa1067040:CDS | 30.0% | |
!! | AGTTGTTGTAAAATGGGTTA+TGG | - | chr7_2:61243913-61243932 | Msa1067040:CDS | 30.0% |
!! | CTGTGGTTTGATTTGATTAT+AGG | - | chr7_2:61243948-61243967 | Msa1067040:CDS | 30.0% |
!! | TTTGATTTGATTATAGGCTG+TGG | - | chr7_2:61243954-61243973 | Msa1067040:CDS | 30.0% |
AAGCCTGTTTATATAAGCAT+TGG | - | chr7_2:61244042-61244061 | Msa1067040:intron | 30.0% | |
CAAATAGAGAAAGACTTACT+TGG | + | chr7_2:61244133-61244152 | None:intergenic | 30.0% | |
!!! | GGCTAGTTTTTGTTAAAATC+GGG | - | chr7_2:61244351-61244370 | Msa1067040:intron | 30.0% |
!!! | GCTAGTTTTTGTTAAAATCG+GGG | - | chr7_2:61244352-61244371 | Msa1067040:intron | 30.0% |
AAGTTTGGTAGAATCACATT+GGG | + | chr7_2:61244381-61244400 | None:intergenic | 30.0% | |
TAAGTTTGGTAGAATCACAT+TGG | + | chr7_2:61244382-61244401 | None:intergenic | 30.0% | |
CAATAAGTTCCAATGAAATG+GGG | + | chr7_2:61244707-61244726 | None:intergenic | 30.0% | |
CCAATAAGTTCCAATGAAAT+GGG | + | chr7_2:61244708-61244727 | None:intergenic | 30.0% | |
CCATTTCATTGGAACTTATT+GGG | - | chr7_2:61244706-61244725 | Msa1067040:intron | 30.0% | |
CATTTCATTGGAACTTATTG+GGG | - | chr7_2:61244707-61244726 | Msa1067040:intron | 30.0% | |
AGCTGTAGTCATTAAAAATG+GGG | + | chr7_2:61244796-61244815 | None:intergenic | 30.0% | |
GAGCTGTAGTCATTAAAAAT+GGG | + | chr7_2:61244797-61244816 | None:intergenic | 30.0% | |
AGAGCTGTAGTCATTAAAAA+TGG | + | chr7_2:61244798-61244817 | None:intergenic | 30.0% | |
!! | ATTTGGATGCATTTTGATGA+AGG | - | chr7_2:61244898-61244917 | Msa1067040:intron | 30.0% |
TTTGATGAAGGATTTCCTAA+AGG | - | chr7_2:61244910-61244929 | Msa1067040:intron | 30.0% | |
! | TTAACTCTCAAAGGTTCTTT+TGG | + | chr7_2:61245025-61245044 | None:intergenic | 30.0% |
!! | TAGTGCTGATAAAATCTTGT+TGG | - | chr7_2:61245217-61245236 | Msa1067040:intron | 30.0% |
CAAATGCAATATGGTTCAAT+TGG | - | chr7_2:61245253-61245272 | Msa1067040:intron | 30.0% | |
AGGTTAAACAAACAATGTTC+AGG | + | chr7_2:61245416-61245435 | None:intergenic | 30.0% | |
! | CTGTAAAGCATTCAATAGAA+AGG | + | chr7_2:61245436-61245455 | None:intergenic | 30.0% |
CTTTCTATTGAATGCTTTAC+AGG | - | chr7_2:61245434-61245453 | Msa1067040:intron | 30.0% | |
ATTGTTTATCAGGAAGATGA+TGG | + | chr7_2:61245505-61245524 | None:intergenic | 30.0% | |
ATCATCTTCCTGATAAACAA+TGG | - | chr7_2:61245504-61245523 | Msa1067040:CDS | 30.0% | |
ATCATGAATTTCAACCTCAA+TGG | + | chr7_2:61245538-61245557 | None:intergenic | 30.0% | |
ATTGAGGTTGAAATTCATGA+TGG | - | chr7_2:61245537-61245556 | Msa1067040:CDS | 30.0% | |
! | CAGTTCTTGATAACATTGTA+TGG | + | chr7_2:61245564-61245583 | None:intergenic | 30.0% |
CATACAATGTTATCAAGAAC+TGG | - | chr7_2:61245562-61245581 | Msa1067040:CDS | 30.0% | |
TTGATTGATGCAATTCACAA+TGG | - | chr7_2:61245597-61245616 | Msa1067040:CDS | 30.0% | |
! | CTTGTTATAGAAGAAGTTTG+AGG | + | chr7_2:61245677-61245696 | None:intergenic | 30.0% |
TTGAAGTTTACTGAGGATTT+GGG | + | chr7_2:61245891-61245910 | None:intergenic | 30.0% | |
! | TTTGAAGTTTACTGAGGATT+TGG | + | chr7_2:61245892-61245911 | None:intergenic | 30.0% |
ATTCAGTCACTTGAGATAAA+TGG | - | chr7_2:61246040-61246059 | Msa1067040:five_prime_UTR | 30.0% | |
! | ATAGTGATGGAATGGAAAGT+TGG | + | chr7_2:61242373-61242392 | None:intergenic | 35.0% |
! | GAAATGAGATAGTGATGGAA+TGG | + | chr7_2:61242381-61242400 | None:intergenic | 35.0% |
GTTGTGAAATGAGATAGTGA+TGG | + | chr7_2:61242386-61242405 | None:intergenic | 35.0% | |
TTGTGGTTTAACGTGGAAAT+GGG | + | chr7_2:61242453-61242472 | None:intergenic | 35.0% | |
TTTGTGGTTTAACGTGGAAA+TGG | + | chr7_2:61242454-61242473 | None:intergenic | 35.0% | |
!! | GTTTAGTTTGTGGTTTAACG+TGG | + | chr7_2:61242460-61242479 | None:intergenic | 35.0% |
!! | TGTGTTGTTACTTTCACTGT+TGG | - | chr7_2:61242883-61242902 | Msa1067040:CDS | 35.0% |
!! | GTGTTGTTACTTTCACTGTT+GGG | - | chr7_2:61242884-61242903 | Msa1067040:CDS | 35.0% |
!! | TGTTGTTACTTTCACTGTTG+GGG | - | chr7_2:61242885-61242904 | Msa1067040:CDS | 35.0% |
AGTGTTCTTAATGCTATTGC+TGG | - | chr7_2:61242913-61242932 | Msa1067040:CDS | 35.0% | |
! | TTGCCGCTTATTTGTATTGT+TGG | - | chr7_2:61242952-61242971 | Msa1067040:CDS | 35.0% |
CCACCAACAATACAAATAAG+CGG | + | chr7_2:61242958-61242977 | None:intergenic | 35.0% | |
GGACCCAATTCTAATGATTA+TGG | - | chr7_2:61242976-61242995 | Msa1067040:CDS | 35.0% | |
! | CTAATGATTATGGGACTAGT+AGG | - | chr7_2:61242986-61243005 | Msa1067040:CDS | 35.0% |
!! | TCAGACTGTTACTTGTTTTC+AGG | - | chr7_2:61243062-61243081 | Msa1067040:intron | 35.0% |
!!! | TTACTTGTTTTCAGGTTCGT+TGG | - | chr7_2:61243070-61243089 | Msa1067040:intron | 35.0% |
! | TAGCTTTTACCAAATCACAG+CGG | + | chr7_2:61243320-61243339 | None:intergenic | 35.0% |
CAGTGAGTTTGACAAAATCA+TGG | + | chr7_2:61243389-61243408 | None:intergenic | 35.0% | |
ACTACATGTTTGAATTGGAG+TGG | - | chr7_2:61243424-61243443 | Msa1067040:CDS | 35.0% | |
CTACATGTTTGAATTGGAGT+GGG | - | chr7_2:61243425-61243444 | Msa1067040:CDS | 35.0% | |
TACACTTGGCTGTTGTAAAA+TGG | - | chr7_2:61243568-61243587 | Msa1067040:CDS | 35.0% | |
ACACTTGGCTGTTGTAAAAT+GGG | - | chr7_2:61243569-61243588 | Msa1067040:CDS | 35.0% | |
TGTCAGATACATAGTGACTT+TGG | - | chr7_2:61243618-61243637 | Msa1067040:CDS | 35.0% | |
AGGGTTTGTCAGAATTATAG+TGG | - | chr7_2:61243649-61243668 | Msa1067040:CDS | 35.0% | |
CAAAATCATGGTAAGCACTA+TGG | - | chr7_2:61243712-61243731 | Msa1067040:CDS | 35.0% | |
!!! | TATGGTGATTGTTTTGACTG+TGG | - | chr7_2:61243931-61243950 | Msa1067040:CDS | 35.0% |
CAGCCAATGCTTATATAAAC+AGG | + | chr7_2:61244048-61244067 | None:intergenic | 35.0% | |
AATTACTGAAAAGTGGGATG+AGG | + | chr7_2:61244158-61244177 | None:intergenic | 35.0% | |
CACGCTAATTACTGAAAAGT+GGG | + | chr7_2:61244164-61244183 | None:intergenic | 35.0% | |
ACACGCTAATTACTGAAAAG+TGG | + | chr7_2:61244165-61244184 | None:intergenic | 35.0% | |
!!! | AAAGAATCTGGCTTTTGTGT+TGG | - | chr7_2:61244211-61244230 | Msa1067040:intron | 35.0% |
! | CATCGTGTTTAAAGCAAGTT+TGG | + | chr7_2:61244252-61244271 | None:intergenic | 35.0% |
GTTTGAATTAGCTGCAAGTT+TGG | - | chr7_2:61244288-61244307 | Msa1067040:intron | 35.0% | |
TGAGATTGTTGAAGCTTCAA+AGG | - | chr7_2:61244330-61244349 | Msa1067040:intron | 35.0% | |
! | AGTTTTTGTTAAAATCGGGG+TGG | - | chr7_2:61244355-61244374 | Msa1067040:intron | 35.0% |
TGTGATTCTACCAAACTTAC+TGG | - | chr7_2:61244383-61244402 | Msa1067040:intron | 35.0% | |
TTTCTGGATTCCAGTAAGTT+TGG | + | chr7_2:61244396-61244415 | None:intergenic | 35.0% | |
TACGTTAACAAGTGCATTTC+TGG | + | chr7_2:61244412-61244431 | None:intergenic | 35.0% | |
TTAACGTATGTGTGAAGAAG+AGG | - | chr7_2:61244424-61244443 | Msa1067040:CDS | 35.0% | |
TTGTAGATTGAGTAACCACA+TGG | - | chr7_2:61244499-61244518 | Msa1067040:CDS | 35.0% | |
TGTAGATTGAGTAACCACAT+GGG | - | chr7_2:61244500-61244519 | Msa1067040:CDS | 35.0% | |
CCCATTTCATTGGAACTTAT+TGG | - | chr7_2:61244705-61244724 | Msa1067040:intron | 35.0% | |
CCCAATAAGTTCCAATGAAA+TGG | + | chr7_2:61244709-61244728 | None:intergenic | 35.0% | |
TTTAATGACTACAGCTCTGT+TGG | - | chr7_2:61244800-61244819 | Msa1067040:intron | 35.0% | |
TTAATGACTACAGCTCTGTT+GGG | - | chr7_2:61244801-61244820 | Msa1067040:intron | 35.0% | |
ACTTCTTCTCAAGAAAGAGA+AGG | - | chr7_2:61244829-61244848 | Msa1067040:intron | 35.0% | |
ATCAAAATGCATCCAAATGC+AGG | + | chr7_2:61244896-61244915 | None:intergenic | 35.0% | |
CTGCCTATGAAAATTACCAT+AGG | - | chr7_2:61244963-61244982 | Msa1067040:intron | 35.0% | |
! | ACTTCAAAGGTTTTCCATCT+GGG | + | chr7_2:61244997-61245016 | None:intergenic | 35.0% |
ACAGCATCTGTTGTATATGT+TGG | + | chr7_2:61245057-61245076 | None:intergenic | 35.0% | |
TCAAAAATTGAAATTGCCCG+AGG | - | chr7_2:61245126-61245145 | Msa1067040:intron | 35.0% | |
CAAAAATTGAAATTGCCCGA+GGG | - | chr7_2:61245127-61245146 | Msa1067040:intron | 35.0% | |
TGCAATATGGTTCAATTGGA+TGG | - | chr7_2:61245257-61245276 | Msa1067040:intron | 35.0% | |
ATCTTCCTGATAAACAATGG+AGG | - | chr7_2:61245507-61245526 | Msa1067040:CDS | 35.0% | |
TGTATCCTCCATTGTTTATC+AGG | + | chr7_2:61245515-61245534 | None:intergenic | 35.0% | |
ATCAAGAACTGGAATTACAC+TGG | - | chr7_2:61245573-61245592 | Msa1067040:CDS | 35.0% | |
ACAATGGTGAAGGAAAATGT+TGG | - | chr7_2:61245613-61245632 | Msa1067040:CDS | 35.0% | |
TCTTCACAGAATACCTGAAA+AGG | + | chr7_2:61245727-61245746 | None:intergenic | 35.0% | |
!!! | TTTTCAGGTATTCTGTGAAG+AGG | - | chr7_2:61245726-61245745 | Msa1067040:CDS | 35.0% |
CATTGAAGTGATTGTTCACA+AGG | - | chr7_2:61245804-61245823 | Msa1067040:CDS | 35.0% | |
TGAAGTTTACTGAGGATTTG+GGG | + | chr7_2:61245890-61245909 | None:intergenic | 35.0% | |
!! | ACTGACTTTGAAGTTTACTG+AGG | + | chr7_2:61245898-61245917 | None:intergenic | 35.0% |
! | GTTGGTAAGAGTAAGACAGT+GGG | + | chr7_2:61242355-61242374 | None:intergenic | 40.0% |
!! | AGTTGGTAAGAGTAAGACAG+TGG | + | chr7_2:61242356-61242375 | None:intergenic | 40.0% |
AAATGGGAAGAGACTAAGAG+GGG | + | chr7_2:61242437-61242456 | None:intergenic | 40.0% | |
GAAATGGGAAGAGACTAAGA+GGG | + | chr7_2:61242438-61242457 | None:intergenic | 40.0% | |
!! | GTTGTTACTTTCACTGTTGG+GGG | - | chr7_2:61242886-61242905 | Msa1067040:CDS | 40.0% |
!! | TTGTTACTTTCACTGTTGGG+GGG | - | chr7_2:61242887-61242906 | Msa1067040:CDS | 40.0% |
CCGCTTATTTGTATTGTTGG+TGG | - | chr7_2:61242955-61242974 | Msa1067040:CDS | 40.0% | |
!! | TGGTGTTCCTGATTTTAGTC+AGG | - | chr7_2:61243026-61243045 | Msa1067040:CDS | 40.0% |
CTCAACTCCTGACTAAAATC+AGG | + | chr7_2:61243036-61243055 | None:intergenic | 40.0% | |
!! | CTGATTTTAGTCAGGAGTTG+AGG | - | chr7_2:61243034-61243053 | Msa1067040:CDS | 40.0% |
CAGTGAGTTTGTCAGAATCA+CGG | - | chr7_2:61243198-61243217 | Msa1067040:CDS | 40.0% | |
CACTTGGCTGTTGTAAAATG+GGG | - | chr7_2:61243570-61243589 | Msa1067040:CDS | 40.0% | |
TAGTGACTTTGGTATCACAG+AGG | - | chr7_2:61243629-61243648 | Msa1067040:CDS | 40.0% | |
AGTGACTTTGGTATCACAGA+GGG | - | chr7_2:61243630-61243649 | Msa1067040:CDS | 40.0% | |
TAATTTAAGCGGGCACATTG+TGG | - | chr7_2:61243850-61243869 | Msa1067040:CDS | 40.0% | |
CAACTAAGTGCATGCATGTT+TGG | + | chr7_2:61243898-61243917 | None:intergenic | 40.0% | |
ATAGGCTGTGGTGAATAACT+TGG | - | chr7_2:61243966-61243985 | Msa1067040:CDS | 40.0% | |
TGAATTAGCTGCAAGTTTGG+TGG | - | chr7_2:61244291-61244310 | Msa1067040:intron | 40.0% | |
GAAGAAGAGGAACCGATTAT+TGG | - | chr7_2:61244437-61244456 | Msa1067040:CDS | 40.0% | |
GTAGATTGAGTAACCACATG+GGG | - | chr7_2:61244501-61244520 | Msa1067040:CDS | 40.0% | |
GCAGTAAAACCTGTACTAGT+AGG | - | chr7_2:61244566-61244585 | Msa1067040:intron | 40.0% | |
GTAAAACCTGTACTAGTAGG+TGG | - | chr7_2:61244569-61244588 | Msa1067040:intron | 40.0% | |
AAGTTCCAATGAAATGGGGA+TGG | + | chr7_2:61244703-61244722 | None:intergenic | 40.0% | |
GTAGTCATTAAAAATGGGGC+CGG | + | chr7_2:61244792-61244811 | None:intergenic | 40.0% | |
! | CATCTGGGACAAATATCCTA+TGG | + | chr7_2:61244982-61245001 | None:intergenic | 40.0% |
CATAGGATATTTGTCCCAGA+TGG | - | chr7_2:61244980-61244999 | Msa1067040:intron | 40.0% | |
! | GACTTCAAAGGTTTTCCATC+TGG | + | chr7_2:61244998-61245017 | None:intergenic | 40.0% |
!! | TCTTTTGGTGCAGACTTCAA+AGG | + | chr7_2:61245010-61245029 | None:intergenic | 40.0% |
GCTGATAAAATCTTGTTGGC+AGG | - | chr7_2:61245221-61245240 | Msa1067040:intron | 40.0% | |
GATGCAATTCACAATGGTGA+AGG | - | chr7_2:61245603-61245622 | Msa1067040:CDS | 40.0% | |
AGGAAAATGTTGGACAACCA+AGG | - | chr7_2:61245623-61245642 | Msa1067040:CDS | 40.0% | |
! | TTCATGCATGCTTCCTTTTC+AGG | - | chr7_2:61245711-61245730 | Msa1067040:CDS | 40.0% |
AAGCAAAGAGTTGCTTGAGT+GGG | - | chr7_2:61245834-61245853 | Msa1067040:CDS | 40.0% | |
GAAGTTTACTGAGGATTTGG+GGG | + | chr7_2:61245889-61245908 | None:intergenic | 40.0% | |
GGAAATGGGAAGAGACTAAG+AGG | + | chr7_2:61242439-61242458 | None:intergenic | 45.0% | |
CATGAAACGACGTCGTTGTT+TGG | + | chr7_2:61242607-61242626 | None:intergenic | 45.0% | |
GGTCCAAACATGCATACACT+TGG | - | chr7_2:61243554-61243573 | Msa1067040:CDS | 45.0% | |
CAGCCAAGTGTATGCATGTT+TGG | + | chr7_2:61243560-61243579 | None:intergenic | 45.0% | |
AAAGTGGGATGAGGAATACC+AGG | + | chr7_2:61244078-61244097 | None:intergenic | 45.0% | |
ACAGGATCACGACTGAAAGT+GGG | + | chr7_2:61244093-61244112 | None:intergenic | 45.0% | |
! | CTGCAAGTTTGGTGGAATCA+TGG | - | chr7_2:61244299-61244318 | Msa1067040:intron | 45.0% |
! | CAAGTTTGGTGGAATCATGG+TGG | - | chr7_2:61244302-61244321 | Msa1067040:intron | 45.0% |
ATTGAGTAACCACATGGGGT+TGG | - | chr7_2:61244505-61244524 | Msa1067040:CDS | 45.0% | |
TTAGGACCACCTACTAGTAC+AGG | + | chr7_2:61244578-61244597 | None:intergenic | 45.0% | |
TAGTAGGTGGTCCTAAACTG+AGG | - | chr7_2:61244582-61244601 | Msa1067040:intron | 45.0% | |
AGTAGGTGGTCCTAAACTGA+GGG | - | chr7_2:61244583-61244602 | Msa1067040:intron | 45.0% | |
TGCATCAGCTAGTTCGACAA+AGG | + | chr7_2:61244627-61244646 | None:intergenic | 45.0% | |
!! | TTATTGGGGTGCTGTGAGTA+CGG | - | chr7_2:61244721-61244740 | Msa1067040:intron | 45.0% |
ATTAGCAACCACAACCCGAT+CGG | + | chr7_2:61244870-61244889 | None:intergenic | 45.0% | |
! | GTTGCTAATGGACCTGCATT+TGG | - | chr7_2:61244881-61244900 | Msa1067040:intron | 45.0% |
ACTGCTGTAATTGCTGAGAC+AGG | - | chr7_2:61245085-61245104 | Msa1067040:intron | 45.0% | |
CTGCTGTAATTGCTGAGACA+GGG | - | chr7_2:61245086-61245105 | Msa1067040:intron | 45.0% | |
TGCTGTAATTGCTGAGACAG+GGG | - | chr7_2:61245087-61245106 | Msa1067040:intron | 45.0% | |
GGTTCAATTGGATGGTCTGT+TGG | - | chr7_2:61245265-61245284 | Msa1067040:intron | 45.0% | |
AAGCGAGTGATTGCTTGCAT+TGG | - | chr7_2:61245322-61245341 | Msa1067040:intron | 45.0% | |
! | GTGATTGCTTGCATTGGTGA+TGG | - | chr7_2:61245328-61245347 | Msa1067040:intron | 45.0% |
!! | CATTGGTGATGGAAGCTTTC+AGG | - | chr7_2:61245339-61245358 | Msa1067040:intron | 45.0% |
TGCTTTACAGGTAACTGCAC+AGG | - | chr7_2:61245446-61245465 | Msa1067040:CDS | 45.0% | |
CAATGGAGGATACACCATTG+AGG | - | chr7_2:61245521-61245540 | Msa1067040:CDS | 45.0% | |
CAATGTCAAGTGACTCACCT+TGG | + | chr7_2:61245643-61245662 | None:intergenic | 45.0% | |
TTTCTTTGGTCCTGTTGCTG+TGG | + | chr7_2:61245770-61245789 | None:intergenic | 45.0% | |
CAAGCAAAGAGTTGCTTGAG+TGG | - | chr7_2:61245833-61245852 | Msa1067040:CDS | 45.0% | |
AGCAAAGAGTTGCTTGAGTG+GGG | - | chr7_2:61245835-61245854 | Msa1067040:CDS | 45.0% | |
TTTACTGAGGATTTGGGGGA+CGG | + | chr7_2:61245885-61245904 | None:intergenic | 45.0% | |
! | GACACTGTTACTTAGTCCCT+AGG | - | chr7_2:61246171-61246190 | Msa1067040:five_prime_UTR | 45.0% |
! | GTAAGACAGTGGGAGGTACA+TGG | + | chr7_2:61242345-61242364 | None:intergenic | 50.0% |
GGTAAGAGTAAGACAGTGGG+AGG | + | chr7_2:61242352-61242371 | None:intergenic | 50.0% | |
!! | TGACGCCGACTTGGACTAAT+CGG | + | chr7_2:61242714-61242733 | None:intergenic | 50.0% |
ATTGACGAGATGGTCGAGGA+GGG | + | chr7_2:61242773-61242792 | None:intergenic | 50.0% | |
GTTCATTGACGAGATGGTCG+AGG | + | chr7_2:61242777-61242796 | None:intergenic | 50.0% | |
CGACCATCTCGTCAATGAAC+CGG | - | chr7_2:61242777-61242796 | Msa1067040:intron | 50.0% | |
TGCTGTAACGAGCTGAATGC+AGG | - | chr7_2:61242817-61242836 | Msa1067040:intron | 50.0% | |
CGAGCTGAATGCAGGTTATG+CGG | - | chr7_2:61242825-61242844 | Msa1067040:intron | 50.0% | |
AATGCAGGTTATGCGGCTGA+CGG | - | chr7_2:61242832-61242851 | Msa1067040:intron | 50.0% | |
GTGACTTTGCCGCTGTGATT+TGG | - | chr7_2:61243308-61243327 | Msa1067040:intron | 50.0% | |
!! | AGCATTGGCTGTAACTTGCC+TGG | - | chr7_2:61244057-61244076 | Msa1067040:intron | 50.0% |
TCACGACTGAAAGTGGGATG+AGG | + | chr7_2:61244087-61244106 | None:intergenic | 50.0% | |
GACAGGATCACGACTGAAAG+TGG | + | chr7_2:61244094-61244113 | None:intergenic | 50.0% | |
ACTTGGGAGCGAGTGAGAAA+GGG | + | chr7_2:61244116-61244135 | None:intergenic | 50.0% | |
TACTTGGGAGCGAGTGAGAA+AGG | + | chr7_2:61244117-61244136 | None:intergenic | 50.0% | |
! | GCTTTTGCCACCCTCAGTTT+AGG | + | chr7_2:61244596-61244615 | None:intergenic | 50.0% |
GTCGAACTAGCTGATGCAAG+TGG | - | chr7_2:61244629-61244648 | Msa1067040:intron | 50.0% | |
CCCTTTAGCTGATGGCATCA+CGG | + | chr7_2:61244666-61244685 | None:intergenic | 50.0% | |
CCGTGATGCCATCAGCTAAA+GGG | - | chr7_2:61244663-61244682 | Msa1067040:intron | 50.0% | |
GATGCCATCAGCTAAAGGGA+TGG | - | chr7_2:61244667-61244686 | Msa1067040:intron | 50.0% | |
TGAAATGGGGATGGTGCTCA+GGG | + | chr7_2:61244694-61244713 | None:intergenic | 50.0% | |
ATGAAATGGGGATGGTGCTC+AGG | + | chr7_2:61244695-61244714 | None:intergenic | 50.0% | |
GAGCACCATCCCCATTTCAT+TGG | - | chr7_2:61244695-61244714 | Msa1067040:intron | 50.0% | |
GCTGACGCATACTTGTTTGC+CGG | - | chr7_2:61244770-61244789 | Msa1067040:intron | 50.0% | |
CAATCATTGTGCAGCCCGAT+CGG | - | chr7_2:61244852-61244871 | Msa1067040:intron | 50.0% | |
AATCATTGTGCAGCCCGATC+GGG | - | chr7_2:61244853-61244872 | Msa1067040:intron | 50.0% | |
TTAGCAACCACAACCCGATC+GGG | + | chr7_2:61244869-61244888 | None:intergenic | 50.0% | |
! | GATCGGGTTGTGGTTGCTAA+TGG | - | chr7_2:61244869-61244888 | Msa1067040:intron | 50.0% |
GACGCTTTGCAAGTGCCTTT+AGG | + | chr7_2:61244928-61244947 | None:intergenic | 50.0% | |
TTGAAATTGCCCGAGGGATG+TGG | - | chr7_2:61245133-61245152 | Msa1067040:intron | 50.0% | |
TGAAATTGCCCGAGGGATGT+GGG | - | chr7_2:61245134-61245153 | Msa1067040:intron | 50.0% | |
AACACTTACCCACATCCCTC+GGG | + | chr7_2:61245145-61245164 | None:intergenic | 50.0% | |
GAACACTTACCCACATCCCT+CGG | + | chr7_2:61245146-61245165 | None:intergenic | 50.0% | |
TGGTCTGTTGGTGCAACTCT+TGG | - | chr7_2:61245277-61245296 | Msa1067040:intron | 50.0% | |
AAGCAATCACTCGCTTCTCG+GGG | + | chr7_2:61245318-61245337 | None:intergenic | 50.0% | |
CAAGCAATCACTCGCTTCTC+GGG | + | chr7_2:61245319-61245338 | None:intergenic | 50.0% | |
GCAAGCAATCACTCGCTTCT+CGG | + | chr7_2:61245320-61245339 | None:intergenic | 50.0% | |
GAAGCAATTGCCACAGCAAC+AGG | - | chr7_2:61245757-61245776 | Msa1067040:CDS | 50.0% | |
! | GCACGCCGATTAGTCCAAGT+CGG | - | chr7_2:61242706-61242725 | Msa1067040:CDS | 55.0% |
CATTGACGAGATGGTCGAGG+AGG | + | chr7_2:61242774-61242793 | None:intergenic | 55.0% | |
GCTCCGGTTCATTGACGAGA+TGG | + | chr7_2:61242783-61242802 | None:intergenic | 55.0% | |
GAACCGGAGCTGAACCTCAT+CGG | - | chr7_2:61242793-61242812 | Msa1067040:intron | 55.0% | |
CAACCGATGAGGTTCAGCTC+CGG | + | chr7_2:61242799-61242818 | None:intergenic | 55.0% | |
GCTCGTTACAGCAACCGATG+AGG | + | chr7_2:61242810-61242829 | None:intergenic | 55.0% | |
ATGCGGCTGACGGTTATGCT+CGG | - | chr7_2:61242842-61242861 | Msa1067040:intron | 55.0% | |
TATGCTCGGTCACGTGGTGT+CGG | - | chr7_2:61242856-61242875 | Msa1067040:intron | 55.0% | |
AGGTGGTCCTAAACTGAGGG+TGG | - | chr7_2:61244586-61244605 | Msa1067040:intron | 55.0% | |
GCCGTGATGCCATCAGCTAA+AGG | - | chr7_2:61244662-61244681 | Msa1067040:intron | 55.0% | |
GGGACCATCCCTTTAGCTGA+TGG | + | chr7_2:61244674-61244693 | None:intergenic | 55.0% | |
TTGCTGAGACAGGGGACTCA+TGG | - | chr7_2:61245095-61245114 | Msa1067040:intron | 55.0% | |
! | GTGTCGACAATGCTGCGATG+TGG | - | chr7_2:61245471-61245490 | Msa1067040:CDS | 55.0% |
AGGATTTGGGGGACGGCTAT+TGG | + | chr7_2:61245878-61245897 | None:intergenic | 55.0% | |
! | ATCGCGGTGGCTGGTTGGAT+CGG | + | chr7_2:61242652-61242671 | None:intergenic | 60.0% |
CTAATCGGCGTGCGAGATGG+CGG | + | chr7_2:61242699-61242718 | None:intergenic | 60.0% | |
GGACTAATCGGCGTGCGAGA+TGG | + | chr7_2:61242702-61242721 | None:intergenic | 60.0% | |
ACCGACGTCTTCTCCGTTCC+CGG | - | chr7_2:61242733-61242752 | Msa1067040:CDS | 60.0% | |
GAGGTTGAAGTCGCCGGGAA+CGG | + | chr7_2:61242749-61242768 | None:intergenic | 60.0% | |
AGGGTGAGGTTGAAGTCGCC+GGG | + | chr7_2:61242754-61242773 | None:intergenic | 60.0% | |
GAGGGTGAGGTTGAAGTCGC+CGG | + | chr7_2:61242755-61242774 | None:intergenic | 60.0% | |
GACGGTTATGCTCGGTCACG+TGG | - | chr7_2:61242850-61242869 | Msa1067040:intron | 60.0% | |
GGAGCGAGTGAGAAAGGGAC+AGG | + | chr7_2:61244111-61244130 | None:intergenic | 60.0% | |
! | CTGCTGCTTCCAACCCCATG+TGG | + | chr7_2:61244517-61244536 | None:intergenic | 60.0% |
GGGGTTGGAAGCAGCAGTTG+AGG | - | chr7_2:61244520-61244539 | Msa1067040:CDS | 60.0% | |
AGTTGCTTGAGTGGGGCTCC+AGG | - | chr7_2:61245842-61245861 | Msa1067040:CDS | 60.0% | |
GTTGCTTGAGTGGGGCTCCA+GGG | - | chr7_2:61245843-61245862 | Msa1067040:CDS | 60.0% | |
GCTATTGGCAGCAGAGACCC+TGG | + | chr7_2:61245863-61245882 | None:intergenic | 60.0% | |
! | GGTGGCTGGTTGGATCGGAG+AGG | + | chr7_2:61242647-61242666 | None:intergenic | 65.0% |
GCCTCCTGCGACGCTACACT+CGG | - | chr7_2:61242673-61242692 | Msa1067040:CDS | 65.0% | |
! | AGACGTCGGTGACGCCGACT+TGG | + | chr7_2:61242723-61242742 | None:intergenic | 65.0% |
GCCGGGAACGGAGAAGACGT+CGG | + | chr7_2:61242737-61242756 | None:intergenic | 65.0% | |
CGAGATGGTCGAGGAGGGTG+AGG | + | chr7_2:61242768-61242787 | None:intergenic | 65.0% | |
! | TGTGCAGCCCGATCGGGTTG+TGG | - | chr7_2:61244859-61244878 | Msa1067040:intron | 65.0% |
AGGCGATCGCGGTGGCTGGT+TGG | + | chr7_2:61242657-61242676 | None:intergenic | 70.0% | |
AGCGTCGCAGGAGGCGATCG+CGG | + | chr7_2:61242668-61242687 | None:intergenic | 70.0% | |
GCCGAGTGTAGCGTCGCAGG+AGG | + | chr7_2:61242677-61242696 | None:intergenic | 70.0% | |
CAGGAGGCGATCGCGGTGGC+TGG | + | chr7_2:61242661-61242680 | None:intergenic | 75.0% | |
GTCGCAGGAGGCGATCGCGG+TGG | + | chr7_2:61242665-61242684 | None:intergenic | 75.0% | |
GCGGCCGAGTGTAGCGTCGC+AGG | + | chr7_2:61242680-61242699 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_2 | gene | 61242311 | 61246210 | 61242311 | ID=Msa1067040;Name=Msa1067040 |
chr7_2 | mRNA | 61242311 | 61246210 | 61242311 | ID=Msa1067040-mRNA-1;Parent=Msa1067040;Name=Msa1067040-mRNA-1;_AED=0.02;_eAED=0.02;_QI=254|1|1|1|1|1|6|307|603 |
chr7_2 | exon | 61242311 | 61242788 | 61242311 | ID=Msa1067040-mRNA-1:exon:12327;Parent=Msa1067040-mRNA-1 |
chr7_2 | exon | 61242877 | 61243065 | 61242877 | ID=Msa1067040-mRNA-1:exon:12326;Parent=Msa1067040-mRNA-1 |
chr7_2 | exon | 61243161 | 61243278 | 61243161 | ID=Msa1067040-mRNA-1:exon:12325;Parent=Msa1067040-mRNA-1 |
chr7_2 | exon | 61243366 | 61244016 | 61243366 | ID=Msa1067040-mRNA-1:exon:12324;Parent=Msa1067040-mRNA-1 |
chr7_2 | exon | 61244388 | 61244551 | 61244388 | ID=Msa1067040-mRNA-1:exon:12323;Parent=Msa1067040-mRNA-1 |
chr7_2 | exon | 61245438 | 61246210 | 61245438 | ID=Msa1067040-mRNA-1:exon:12322;Parent=Msa1067040-mRNA-1 |
chr7_2 | five_prime_UTR | 61245957 | 61246210 | 61245957 | ID=Msa1067040-mRNA-1:five_prime_utr;Parent=Msa1067040-mRNA-1 |
chr7_2 | CDS | 61245438 | 61245956 | 61245438 | ID=Msa1067040-mRNA-1:cds;Parent=Msa1067040-mRNA-1 |
chr7_2 | CDS | 61244388 | 61244551 | 61244388 | ID=Msa1067040-mRNA-1:cds;Parent=Msa1067040-mRNA-1 |
chr7_2 | CDS | 61243366 | 61244016 | 61243366 | ID=Msa1067040-mRNA-1:cds;Parent=Msa1067040-mRNA-1 |
chr7_2 | CDS | 61243161 | 61243278 | 61243161 | ID=Msa1067040-mRNA-1:cds;Parent=Msa1067040-mRNA-1 |
chr7_2 | CDS | 61242877 | 61243065 | 61242877 | ID=Msa1067040-mRNA-1:cds;Parent=Msa1067040-mRNA-1 |
chr7_2 | CDS | 61242618 | 61242788 | 61242618 | ID=Msa1067040-mRNA-1:cds;Parent=Msa1067040-mRNA-1 |
chr7_2 | three_prime_UTR | 61242311 | 61242617 | 61242311 | ID=Msa1067040-mRNA-1:three_prime_utr;Parent=Msa1067040-mRNA-1 |
Gene Sequence |
Protein sequence |