AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1067040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1067040 MtrunA17_Chr7g0242961 97.678 603 14 0 1 603 1 603 0.0 1225
Msa1067040 MtrunA17_Chr7g0242981 89.421 605 46 3 1 603 1 589 0.0 1099
Msa1067040 MtrunA17_Chr4g0007071 85.832 607 82 3 1 603 1 607 0.0 1071
Msa1067040 MtrunA17_Chr5g0420011 85.502 607 84 3 1 603 1 607 0.0 1068
Msa1067040 MtrunA17_Chr2g0283471 82.155 566 101 0 38 603 17 582 0.0 987
Msa1067040 MtrunA17_Chr2g0279461 59.109 247 67 2 10 228 25 265 1.79e-97 298
Msa1067040 MtrunA17_Chr2g0279471 71.552 116 33 0 485 600 17 132 1.62e-53 179
Msa1067040 MtrunA17_Chr3g0132201 23.723 548 359 20 19 531 47 570 9.30e-18 87.0
Msa1067040 MtrunA17_Chr2g0281881 22.426 544 357 17 27 531 57 574 9.67e-16 80.9
Msa1067040 MtrunA17_Chr2g0290681 22.842 556 353 18 47 558 67 590 1.74e-14 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1067040 AT5G54960.1 84.236 609 88 3 1 603 1 607 0.0 1072
Msa1067040 AT4G33070.1 84.893 609 84 2 1 603 1 607 0.0 1071
Msa1067040 AT5G01320.1 83.444 604 98 2 1 603 1 603 0.0 1055
Msa1067040 AT5G01330.1 82.550 596 100 1 8 603 1 592 0.0 1028
Msa1067040 AT5G17380.1 24.351 501 309 18 47 509 18 486 1.07e-17 87.0
Msa1067040 AT3G48560.1 22.612 513 343 15 47 531 103 589 1.82e-13 73.9

Find 191 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGGTGATGGAAGCTTTC+AGG 0.099113 7_2:-61243160 Msa1067040:intron
CCCATTTCATTGGAACTTAT+TGG 0.122987 7_2:-61243794 Msa1067040:CDS
TAAAAGTAAAATCATCTAAA+AGG 0.208969 7_2:+61242530 None:intergenic
CCATTTCATTGGAACTTATT+GGG 0.218907 7_2:-61243793 Msa1067040:CDS
GGACCCAATTCTAATGATTA+TGG 0.232316 7_2:-61245523 Msa1067040:CDS
TTTGAAGTTTACTGAGGATT+TGG 0.247792 7_2:+61242610 None:intergenic
AGGGGTTATTATATACTAAA+AGG 0.265507 7_2:+61246083 None:intergenic
AAACATAAGCTATCTTTCTT+TGG 0.266263 7_2:+61242718 None:intergenic
TTTGATGGATATTTAAAGTA+TGG 0.270139 7_2:+61245994 None:intergenic
TTAACTCTCAAAGGTTCTTT+TGG 0.273563 7_2:+61243477 None:intergenic
CCCAATAAGTTCCAATGAAA+TGG 0.289567 7_2:+61243793 None:intergenic
TGTATCCTCCATTGTTTATC+AGG 0.289927 7_2:+61242987 None:intergenic
ATTCAGTCACTTGAGATAAA+TGG 0.298734 7_2:-61242459 Msa1067040:three_prime_UTR
TTGAAGTTTACTGAGGATTT+GGG 0.311340 7_2:+61242611 None:intergenic
GATCGGGTTGTGGTTGCTAA+TGG 0.314935 7_2:-61243630 Msa1067040:CDS
GTGTTGTTACTTTCACTGTT+GGG 0.331580 7_2:-61245615 Msa1067040:CDS
TTTGTGGTTTAACGTGGAAA+TGG 0.344615 7_2:+61246048 None:intergenic
CAAATGCAATATGGTTCAAT+TGG 0.346194 7_2:-61243246 Msa1067040:CDS
AGGATTCTTCATCATACTAT+TGG 0.352361 7_2:-61245493 Msa1067040:CDS
AGTGTTCTTAATGCTATTGC+TGG 0.356020 7_2:-61245586 Msa1067040:CDS
GTTGCTAATGGACCTGCATT+TGG 0.356868 7_2:-61243618 Msa1067040:CDS
AACAAAATGTCCACAATGTT+AGG 0.362479 7_2:-61245940 Msa1067040:exon
AGTCCCATAATCATTAGAAT+TGG 0.362617 7_2:+61245519 None:intergenic
CAAGCAATCACTCGCTTCTC+GGG 0.364950 7_2:+61243183 None:intergenic
TATGAGTTTCAAATGCAATA+TGG 0.365373 7_2:-61243255 Msa1067040:CDS
ATGAAATGGGGATGGTGCTC+AGG 0.369145 7_2:+61243807 None:intergenic
CATGAAACGACGTCGTTGTT+TGG 0.370477 7_2:+61245895 None:intergenic
CAGCCAATGCTTATATAAAC+AGG 0.374707 7_2:+61244454 None:intergenic
CAGTTCTTGATAACATTGTA+TGG 0.391023 7_2:+61242938 None:intergenic
CCAATAAGTTCCAATGAAAT+GGG 0.391316 7_2:+61243794 None:intergenic
TTGCCGCTTATTTGTATTGT+TGG 0.393601 7_2:-61245547 Msa1067040:CDS
GACGCTTTGCAAGTGCCTTT+AGG 0.393990 7_2:+61243574 None:intergenic
GAGCACCATCCCCATTTCAT+TGG 0.394834 7_2:-61243804 Msa1067040:CDS
GCAAGCAATCACTCGCTTCT+CGG 0.396937 7_2:+61243182 None:intergenic
GAAGCAATTGCCACAGCAAC+AGG 0.397655 7_2:-61242742 Msa1067040:CDS
CTAATGATTATGGGACTAGT+AGG 0.404499 7_2:-61245513 Msa1067040:CDS
ACCGACGTCTTCTCCGTTCC+CGG 0.411535 7_2:-61245766 Msa1067040:CDS
TTGAAATTGCCCGAGGGATG+TGG 0.415847 7_2:-61243366 Msa1067040:CDS
AGTTGCTTGAGTGGGGCTCC+AGG 0.424677 7_2:-61242657 Msa1067040:CDS
TTTAATGACTACAGCTCTGT+TGG 0.425890 7_2:-61243699 Msa1067040:CDS
GGAAATGGGAAGAGACTAAG+AGG 0.431478 7_2:+61246063 None:intergenic
GGGGTTATTATATACTAAAA+GGG 0.433558 7_2:+61246084 None:intergenic
CAGGAGGCGATCGCGGTGGC+TGG 0.435574 7_2:+61245841 None:intergenic
GACCCAATTCTAATGATTAT+GGG 0.436897 7_2:-61245522 Msa1067040:CDS
GGGTTATTATATACTAAAAG+GGG 0.441988 7_2:+61246085 None:intergenic
TTGTGGTTTAACGTGGAAAT+GGG 0.442454 7_2:+61246049 None:intergenic
ATTGTTTATCAGGAAGATGA+TGG 0.443596 7_2:+61242997 None:intergenic
CCTGGTATCTTCTTCAATAC+AGG 0.447009 7_2:-61246189 Msa1067040:five_prime_UTR
TGTGTTGTTACTTTCACTGT+TGG 0.449760 7_2:-61245616 Msa1067040:CDS
CATACAATGTTATCAAGAAC+TGG 0.450936 7_2:-61242937 Msa1067040:CDS
CTCAACTCCTGACTAAAATC+AGG 0.453988 7_2:+61245466 None:intergenic
AGGCGATCGCGGTGGCTGGT+TGG 0.460812 7_2:+61245845 None:intergenic
GTCCCATAATCATTAGAATT+GGG 0.462038 7_2:+61245520 None:intergenic
TACTTGGGAGCGAGTGAGAA+AGG 0.464104 7_2:+61244385 None:intergenic
ATCAAAATGCATCCAAATGC+AGG 0.464273 7_2:+61243606 None:intergenic
CATTGAAGTGATTGTTCACA+AGG 0.466013 7_2:-61242695 Msa1067040:CDS
TGACGCCGACTTGGACTAAT+CGG 0.473049 7_2:+61245788 None:intergenic
CAATCATTGTGCAGCCCGAT+CGG 0.474852 7_2:-61243647 Msa1067040:CDS
TGGTCTGTTGGTGCAACTCT+TGG 0.476946 7_2:-61243222 Msa1067040:CDS
CCGTGATGCCATCAGCTAAA+GGG 0.477384 7_2:-61243836 Msa1067040:CDS
CATTTCATTGGAACTTATTG+GGG 0.478426 7_2:-61243792 Msa1067040:CDS
TTAGGACCACCTACTAGTAC+AGG 0.482399 7_2:+61243924 None:intergenic
TGTTGTTACTTTCACTGTTG+GGG 0.483644 7_2:-61245614 Msa1067040:CDS
TTTGATGAAGGATTTCCTAA+AGG 0.483996 7_2:-61243589 Msa1067040:CDS
CCGCTTATTTGTATTGTTGG+TGG 0.484728 7_2:-61245544 Msa1067040:CDS
GGTTATTATATACTAAAAGG+GGG 0.485038 7_2:+61246086 None:intergenic
TGCAATATGGTTCAATTGGA+TGG 0.486831 7_2:-61243242 Msa1067040:CDS
AAAAGTAAAATCATCTAAAA+GGG 0.489463 7_2:+61242531 None:intergenic
TTAATGACTACAGCTCTGTT+GGG 0.491232 7_2:-61243698 Msa1067040:CDS
GTTATTATATACTAAAAGGG+GGG 0.491386 7_2:+61246087 None:intergenic
GACAGGATCACGACTGAAAG+TGG 0.492188 7_2:+61244408 None:intergenic
CGACCATCTCGTCAATGAAC+CGG 0.492546 7_2:-61245722 Msa1067040:CDS
AATCATTGTGCAGCCCGATC+GGG 0.492725 7_2:-61243646 Msa1067040:CDS
GCTGACGCATACTTGTTTGC+CGG 0.493130 7_2:-61243729 Msa1067040:CDS
GCCGTGATGCCATCAGCTAA+AGG 0.496857 7_2:-61243837 Msa1067040:CDS
ACAGCATCTGTTGTATATGT+TGG 0.501632 7_2:+61243445 None:intergenic
ATCGCGGTGGCTGGTTGGAT+CGG 0.502733 7_2:+61245850 None:intergenic
GAACACTTACCCACATCCCT+CGG 0.502879 7_2:+61243356 None:intergenic
GCAGTAAAACCTGTACTAGT+AGG 0.506078 7_2:-61243933 Msa1067040:CDS
ATCATGAATTTCAACCTCAA+TGG 0.506430 7_2:+61242964 None:intergenic
ACTGCTGTAATTGCTGAGAC+AGG 0.507925 7_2:-61243414 Msa1067040:CDS
AGCATTGGCTGTAACTTGCC+TGG 0.508186 7_2:-61244442 Msa1067040:CDS
AGACGTCGGTGACGCCGACT+TGG 0.509266 7_2:+61245779 None:intergenic
TTGCTGAGACAGGGGACTCA+TGG 0.509451 7_2:-61243404 Msa1067040:CDS
CATAGGATATTTGTCCCAGA+TGG 0.511574 7_2:-61243519 Msa1067040:CDS
TGCTGTAACGAGCTGAATGC+AGG 0.513314 7_2:-61245682 Msa1067040:CDS
TGTGCAGCCCGATCGGGTTG+TGG 0.514001 7_2:-61243640 Msa1067040:CDS
CGAGATGGTCGAGGAGGGTG+AGG 0.514495 7_2:+61245734 None:intergenic
GGTTCAATTGGATGGTCTGT+TGG 0.514958 7_2:-61243234 Msa1067040:CDS
TTAGCAACCACAACCCGATC+GGG 0.517431 7_2:+61243633 None:intergenic
AAGCCTGTTTATATAAGCAT+TGG 0.517974 7_2:-61244457 Msa1067040:CDS
TTATTATATACTAAAAGGGG+GGG 0.518709 7_2:+61246088 None:intergenic
GCTATTGGCAGCAGAGACCC+TGG 0.518971 7_2:+61242639 None:intergenic
GAGGGTGAGGTTGAAGTCGC+CGG 0.518981 7_2:+61245747 None:intergenic
ATTGAGGTTGAAATTCATGA+TGG 0.521307 7_2:-61242962 Msa1067040:CDS
AACACTTACCCACATCCCTC+GGG 0.524155 7_2:+61243357 None:intergenic
AACATAACATTAACTCTCAA+AGG 0.524430 7_2:+61243468 None:intergenic
TTATTGGGGTGCTGTGAGTA+CGG 0.525149 7_2:-61243778 Msa1067040:CDS
GTTGCTTGAGTGGGGCTCCA+GGG 0.527600 7_2:-61242656 Msa1067040:CDS
GTTTAGTTTGTGGTTTAACG+TGG 0.531113 7_2:+61246042 None:intergenic
GAGGTTGAAGTCGCCGGGAA+CGG 0.536503 7_2:+61245753 None:intergenic
CAAGCAAAGAGTTGCTTGAG+TGG 0.539180 7_2:-61242666 Msa1067040:CDS
TTTCTTTGGTCCTGTTGCTG+TGG 0.540855 7_2:+61242732 None:intergenic
CATCTGGGACAAATATCCTA+TGG 0.541696 7_2:+61243520 None:intergenic
AAGCAAAGAGTTGCTTGAGT+GGG 0.543213 7_2:-61242665 Msa1067040:CDS
GGAGCGAGTGAGAAAGGGAC+AGG 0.543798 7_2:+61244391 None:intergenic
ATAGTGATGGAATGGAAAGT+TGG 0.544516 7_2:+61246129 None:intergenic
TATGCTCGGTCACGTGGTGT+CGG 0.546337 7_2:-61245643 Msa1067040:CDS
TTGATGAAAAGTTTAGTTTG+TGG 0.548420 7_2:+61246032 None:intergenic
GTAAGACAGTGGGAGGTACA+TGG 0.550366 7_2:+61246157 None:intergenic
GTGATTGCTTGCATTGGTGA+TGG 0.552907 7_2:-61243171 Msa1067040:CDS
GCGGCCGAGTGTAGCGTCGC+AGG 0.553256 7_2:+61245822 None:intergenic
ACTTGGGAGCGAGTGAGAAA+GGG 0.553381 7_2:+61244386 None:intergenic
ATAGGCTGTGGTGAATAACT+TGG 0.556113 7_2:-61244533 Msa1067040:intron
AGTTGGTAAGAGTAAGACAG+TGG 0.558764 7_2:+61246146 None:intergenic
GGACTAATCGGCGTGCGAGA+TGG 0.559516 7_2:+61245800 None:intergenic
GCCTCCTGCGACGCTACACT+CGG 0.559561 7_2:-61245826 Msa1067040:CDS
ACTTCTTCTCAAGAAAGAGA+AGG 0.560019 7_2:-61243670 Msa1067040:CDS
CCTGTATTGAAGAAGATACC+AGG 0.560026 7_2:+61246189 None:intergenic
AGGGTGAGGTTGAAGTCGCC+GGG 0.560296 7_2:+61245748 None:intergenic
TGAAGTTTACTGAGGATTTG+GGG 0.562893 7_2:+61242612 None:intergenic
TGCTTTACAGGTAACTGCAC+AGG 0.563537 7_2:-61243053 Msa1067040:intron
TGAAATTGCCCGAGGGATGT+GGG 0.564901 7_2:-61243365 Msa1067040:intron
GAAATGAGATAGTGATGGAA+TGG 0.565338 7_2:+61246121 None:intergenic
TGCTGTAATTGCTGAGACAG+GGG 0.567658 7_2:-61243412 Msa1067040:CDS
TGAAATGGGGATGGTGCTCA+GGG 0.568384 7_2:+61243808 None:intergenic
ATTAGCAACCACAACCCGAT+CGG 0.569214 7_2:+61243632 None:intergenic
GGGACCATCCCTTTAGCTGA+TGG 0.572399 7_2:+61243828 None:intergenic
ATTGAGTAACCACATGGGGT+TGG 0.573467 7_2:-61243994 Msa1067040:CDS
ATCATCTTCCTGATAAACAA+TGG 0.575164 7_2:-61242995 Msa1067040:CDS
CCCTTTAGCTGATGGCATCA+CGG 0.575591 7_2:+61243836 None:intergenic
CTGCCTATGAAAATTACCAT+AGG 0.576792 7_2:-61243536 Msa1067040:CDS
GTTGGTAAGAGTAAGACAGT+GGG 0.577661 7_2:+61246147 None:intergenic
GCTCCGGTTCATTGACGAGA+TGG 0.581139 7_2:+61245719 None:intergenic
GATGCAATTCACAATGGTGA+AGG 0.582372 7_2:-61242896 Msa1067040:CDS
CTGCTGTAATTGCTGAGACA+GGG 0.583448 7_2:-61243413 Msa1067040:CDS
GACGGTTATGCTCGGTCACG+TGG 0.584252 7_2:-61245649 Msa1067040:CDS
GTCGAACTAGCTGATGCAAG+TGG 0.587023 7_2:-61243870 Msa1067040:CDS
AAGCGAGTGATTGCTTGCAT+TGG 0.587132 7_2:-61243177 Msa1067040:CDS
TCACGACTGAAAGTGGGATG+AGG 0.587384 7_2:+61244415 None:intergenic
ATCAAGAACTGGAATTACAC+TGG 0.587582 7_2:-61242926 Msa1067040:CDS
ATCTAAAGATCCTAACATTG+TGG 0.588263 7_2:+61245930 None:intergenic
ATGCGGCTGACGGTTATGCT+CGG 0.592533 7_2:-61245657 Msa1067040:CDS
AAAGTGGGATGAGGAATACC+AGG 0.593405 7_2:+61244424 None:intergenic
CAACCGATGAGGTTCAGCTC+CGG 0.593930 7_2:+61245703 None:intergenic
CGAGCTGAATGCAGGTTATG+CGG 0.594358 7_2:-61245674 Msa1067040:CDS
GAACCGGAGCTGAACCTCAT+CGG 0.594651 7_2:-61245706 Msa1067040:CDS
TTGTAGATTGAGTAACCACA+TGG 0.603932 7_2:-61244000 Msa1067040:intron
ACAATGGTGAAGGAAAATGT+TGG 0.606866 7_2:-61242886 Msa1067040:CDS
GTTCATTGACGAGATGGTCG+AGG 0.607447 7_2:+61245725 None:intergenic
AAGTTCCAATGAAATGGGGA+TGG 0.619469 7_2:+61243799 None:intergenic
AGCGTCGCAGGAGGCGATCG+CGG 0.619577 7_2:+61245834 None:intergenic
AGGAAAATGTTGGACAACCA+AGG 0.622216 7_2:-61242876 Msa1067040:intron
GTTGTTACTTTCACTGTTGG+GGG 0.623451 7_2:-61245613 Msa1067040:CDS
AGCAAAGAGTTGCTTGAGTG+GGG 0.625045 7_2:-61242664 Msa1067040:CDS
GACACTGTTACTTAGTCCCT+AGG 0.626843 7_2:-61242328 Msa1067040:three_prime_UTR
AATGCAGGTTATGCGGCTGA+CGG 0.628000 7_2:-61245667 Msa1067040:CDS
AGTAGGTGGTCCTAAACTGA+GGG 0.628023 7_2:-61243916 Msa1067040:CDS
GAAGTTTACTGAGGATTTGG+GGG 0.630194 7_2:+61242613 None:intergenic
TTGTTACTTTCACTGTTGGG+GGG 0.638206 7_2:-61245612 Msa1067040:CDS
ATTGACGAGATGGTCGAGGA+GGG 0.639532 7_2:+61245729 None:intergenic
GCACGCCGATTAGTCCAAGT+CGG 0.645813 7_2:-61245793 Msa1067040:CDS
CTGCTGCTTCCAACCCCATG+TGG 0.646622 7_2:+61243985 None:intergenic
CATTGACGAGATGGTCGAGG+AGG 0.646882 7_2:+61245728 None:intergenic
ACTGACTTTGAAGTTTACTG+AGG 0.647423 7_2:+61242604 None:intergenic
TGCATCAGCTAGTTCGACAA+AGG 0.650364 7_2:+61243875 None:intergenic
TAGTAGGTGGTCCTAAACTG+AGG 0.652385 7_2:-61243917 Msa1067040:CDS
ACAGGATCACGACTGAAAGT+GGG 0.654306 7_2:+61244409 None:intergenic
GGTAAGAGTAAGACAGTGGG+AGG 0.655254 7_2:+61246150 None:intergenic
AAGCAATCACTCGCTTCTCG+GGG 0.655548 7_2:+61243184 None:intergenic
AGGTGGTCCTAAACTGAGGG+TGG 0.656562 7_2:-61243913 Msa1067040:CDS
CCACCAACAATACAAATAAG+CGG 0.658046 7_2:+61245544 None:intergenic
GATGCCATCAGCTAAAGGGA+TGG 0.659243 7_2:-61243832 Msa1067040:CDS
CAATAAGTTCCAATGAAATG+GGG 0.661557 7_2:+61243795 None:intergenic
GGGGTTGGAAGCAGCAGTTG+AGG 0.663030 7_2:-61243979 Msa1067040:CDS
GTAGATTGAGTAACCACATG+GGG 0.665962 7_2:-61243998 Msa1067040:intron
CTGTATTGAAGAAGATACCA+GGG 0.668995 7_2:+61246190 None:intergenic
GTCGCAGGAGGCGATCGCGG+TGG 0.669288 7_2:+61245837 None:intergenic
ATCTTCCTGATAAACAATGG+AGG 0.670205 7_2:-61242992 Msa1067040:CDS
GTAAAACCTGTACTAGTAGG+TGG 0.676238 7_2:-61243930 Msa1067040:CDS
TTGATTGATGCAATTCACAA+TGG 0.677426 7_2:-61242902 Msa1067040:CDS
AAATGGGAAGAGACTAAGAG+GGG 0.678158 7_2:+61246065 None:intergenic
CAATGGAGGATACACCATTG+AGG 0.679792 7_2:-61242978 Msa1067040:CDS
TGTAGATTGAGTAACCACAT+GGG 0.679957 7_2:-61243999 Msa1067040:intron
GAAATGGGAAGAGACTAAGA+GGG 0.684252 7_2:+61246064 None:intergenic
GCTCGTTACAGCAACCGATG+AGG 0.687230 7_2:+61245692 None:intergenic
GTTGTGAAATGAGATAGTGA+TGG 0.693358 7_2:+61246116 None:intergenic
GTGTCGACAATGCTGCGATG+TGG 0.703073 7_2:-61243028 Msa1067040:CDS
GGTGGCTGGTTGGATCGGAG+AGG 0.716934 7_2:+61245855 None:intergenic
GCCGGGAACGGAGAAGACGT+CGG 0.741181 7_2:+61245765 None:intergenic
TGTATTGAAGAAGATACCAG+GGG 0.756921 7_2:+61246191 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGTAAAATCATCTAAAA+GGG + chr7_2:61245971-61245990 None:intergenic 15.0%
!! TAAAAGTAAAATCATCTAAA+AGG + chr7_2:61245972-61245991 None:intergenic 15.0%
!!! TTTGATGGATATTTAAAGTA+TGG + chr7_2:61242508-61242527 None:intergenic 20.0%
!!! TTTTTGAAGTATAGTTTTGA+TGG + chr7_2:61242523-61242542 None:intergenic 20.0%
!!! TTGCTAAATTTGTAGTTTTT+TGG - chr7_2:61243093-61243112 Msa1067040:intron 20.0%
!!! GCTAAAATTACTACAATTTT+AGG + chr7_2:61243510-61243529 None:intergenic 20.0%
!!! AAAATTGTAGTAATTTTAGC+TGG - chr7_2:61243510-61243529 Msa1067040:CDS 20.0%
!! TAAAATCATGGTAATTTAAG+CGG - chr7_2:61243839-61243858 Msa1067040:CDS 20.0%
!!! TCTCAATTTTTAGAATCAAA+TGG + chr7_2:61245947-61245966 None:intergenic 20.0%
!!! GATGATTTTACTTTTATTGA+TGG - chr7_2:61245976-61245995 Msa1067040:five_prime_UTR 20.0%
! TTATTATATACTAAAAGGGG+GGG + chr7_2:61242414-61242433 None:intergenic 25.0%
! GTTATTATATACTAAAAGGG+GGG + chr7_2:61242415-61242434 None:intergenic 25.0%
! GGTTATTATATACTAAAAGG+GGG + chr7_2:61242416-61242435 None:intergenic 25.0%
! GGGTTATTATATACTAAAAG+GGG + chr7_2:61242417-61242436 None:intergenic 25.0%
! GGGGTTATTATATACTAAAA+GGG + chr7_2:61242418-61242437 None:intergenic 25.0%
! AGGGGTTATTATATACTAAA+AGG + chr7_2:61242419-61242438 None:intergenic 25.0%
!!! TTGATGAAAAGTTTAGTTTG+TGG + chr7_2:61242470-61242489 None:intergenic 25.0%
!!! TTTTTGCTTTTGCAAAATCA+TGG - chr7_2:61243353-61243372 Msa1067040:intron 25.0%
! TCAAACATGTAATGTATGTT+TGG + chr7_2:61243760-61243779 None:intergenic 25.0%
! TACATTACATGTTTGAATTG+AGG - chr7_2:61243764-61243783 Msa1067040:CDS 25.0%
!! GCTTAAATTACCATGATTTT+AGG + chr7_2:61243840-61243859 None:intergenic 25.0%
! AAAATCATGGTAATTTAAGC+GGG - chr7_2:61243840-61243859 Msa1067040:CDS 25.0%
! AAATAGAGAAAGACTTACTT+GGG + chr7_2:61244132-61244151 None:intergenic 25.0%
! TTCAAATCATACAAAGAATC+TGG - chr7_2:61244199-61244218 Msa1067040:intron 25.0%
!!! AGGCTAGTTTTTGTTAAAAT+CGG - chr7_2:61244350-61244369 Msa1067040:intron 25.0%
! TCATCAACATTTCCAATAAT+CGG + chr7_2:61244452-61244471 None:intergenic 25.0%
!! TATCCTATGGTAATTTTCAT+AGG + chr7_2:61244969-61244988 None:intergenic 25.0%
! AACATAACATTAACTCTCAA+AGG + chr7_2:61245034-61245053 None:intergenic 25.0%
! TATGAGTTTCAAATGCAATA+TGG - chr7_2:61245244-61245263 Msa1067040:intron 25.0%
! AAACATAAGCTATCTTTCTT+TGG + chr7_2:61245784-61245803 None:intergenic 25.0%
!! TTGGGTTTTTAATATACCTA+GGG + chr7_2:61246190-61246209 None:intergenic 25.0%
!!! TTTGGGTTTTTAATATACCT+AGG + chr7_2:61246191-61246210 None:intergenic 25.0%
AACAAAATGTCCACAATGTT+AGG - chr7_2:61242559-61242578 Msa1067040:three_prime_UTR 30.0%
ATCTAAAGATCCTAACATTG+TGG + chr7_2:61242572-61242591 None:intergenic 30.0%
GACCCAATTCTAATGATTAT+GGG - chr7_2:61242977-61242996 Msa1067040:CDS 30.0%
GTCCCATAATCATTAGAATT+GGG + chr7_2:61242982-61243001 None:intergenic 30.0%
AGTCCCATAATCATTAGAAT+TGG + chr7_2:61242983-61243002 None:intergenic 30.0%
AGGATTCTTCATCATACTAT+TGG - chr7_2:61243006-61243025 Msa1067040:CDS 30.0%
GTTTATTGTGTTTGTGAAGT+TGG - chr7_2:61243149-61243168 Msa1067040:intron 30.0%
TCAAACATGTAGTGTATGTT+TGG + chr7_2:61243417-61243436 None:intergenic 30.0%
CATACACTACATGTTTGAAT+TGG - chr7_2:61243419-61243438 Msa1067040:CDS 30.0%
TACACTATCAAACTAACTAG+TGG - chr7_2:61243533-61243552 Msa1067040:CDS 30.0%
! ATGATTTTGCAAAATCACAG+TGG + chr7_2:61243701-61243720 None:intergenic 30.0%
! ACTGTGATTTTGCAAAATCA+TGG - chr7_2:61243700-61243719 Msa1067040:CDS 30.0%
TGTACATTGTCCTAAAATCA+TGG - chr7_2:61243827-61243846 Msa1067040:CDS 30.0%
TGCACTTAGTTGTTGTAAAA+TGG - chr7_2:61243906-61243925 Msa1067040:CDS 30.0%
GCACTTAGTTGTTGTAAAAT+GGG - chr7_2:61243907-61243926 Msa1067040:CDS 30.0%
!! AGTTGTTGTAAAATGGGTTA+TGG - chr7_2:61243913-61243932 Msa1067040:CDS 30.0%
!! CTGTGGTTTGATTTGATTAT+AGG - chr7_2:61243948-61243967 Msa1067040:CDS 30.0%
!! TTTGATTTGATTATAGGCTG+TGG - chr7_2:61243954-61243973 Msa1067040:CDS 30.0%
AAGCCTGTTTATATAAGCAT+TGG - chr7_2:61244042-61244061 Msa1067040:intron 30.0%
CAAATAGAGAAAGACTTACT+TGG + chr7_2:61244133-61244152 None:intergenic 30.0%
!!! GGCTAGTTTTTGTTAAAATC+GGG - chr7_2:61244351-61244370 Msa1067040:intron 30.0%
!!! GCTAGTTTTTGTTAAAATCG+GGG - chr7_2:61244352-61244371 Msa1067040:intron 30.0%
AAGTTTGGTAGAATCACATT+GGG + chr7_2:61244381-61244400 None:intergenic 30.0%
TAAGTTTGGTAGAATCACAT+TGG + chr7_2:61244382-61244401 None:intergenic 30.0%
CAATAAGTTCCAATGAAATG+GGG + chr7_2:61244707-61244726 None:intergenic 30.0%
CCAATAAGTTCCAATGAAAT+GGG + chr7_2:61244708-61244727 None:intergenic 30.0%
CCATTTCATTGGAACTTATT+GGG - chr7_2:61244706-61244725 Msa1067040:intron 30.0%
CATTTCATTGGAACTTATTG+GGG - chr7_2:61244707-61244726 Msa1067040:intron 30.0%
AGCTGTAGTCATTAAAAATG+GGG + chr7_2:61244796-61244815 None:intergenic 30.0%
GAGCTGTAGTCATTAAAAAT+GGG + chr7_2:61244797-61244816 None:intergenic 30.0%
AGAGCTGTAGTCATTAAAAA+TGG + chr7_2:61244798-61244817 None:intergenic 30.0%
!! ATTTGGATGCATTTTGATGA+AGG - chr7_2:61244898-61244917 Msa1067040:intron 30.0%
TTTGATGAAGGATTTCCTAA+AGG - chr7_2:61244910-61244929 Msa1067040:intron 30.0%
! TTAACTCTCAAAGGTTCTTT+TGG + chr7_2:61245025-61245044 None:intergenic 30.0%
!! TAGTGCTGATAAAATCTTGT+TGG - chr7_2:61245217-61245236 Msa1067040:intron 30.0%
CAAATGCAATATGGTTCAAT+TGG - chr7_2:61245253-61245272 Msa1067040:intron 30.0%
AGGTTAAACAAACAATGTTC+AGG + chr7_2:61245416-61245435 None:intergenic 30.0%
! CTGTAAAGCATTCAATAGAA+AGG + chr7_2:61245436-61245455 None:intergenic 30.0%
CTTTCTATTGAATGCTTTAC+AGG - chr7_2:61245434-61245453 Msa1067040:intron 30.0%
ATTGTTTATCAGGAAGATGA+TGG + chr7_2:61245505-61245524 None:intergenic 30.0%
ATCATCTTCCTGATAAACAA+TGG - chr7_2:61245504-61245523 Msa1067040:CDS 30.0%
ATCATGAATTTCAACCTCAA+TGG + chr7_2:61245538-61245557 None:intergenic 30.0%
ATTGAGGTTGAAATTCATGA+TGG - chr7_2:61245537-61245556 Msa1067040:CDS 30.0%
! CAGTTCTTGATAACATTGTA+TGG + chr7_2:61245564-61245583 None:intergenic 30.0%
CATACAATGTTATCAAGAAC+TGG - chr7_2:61245562-61245581 Msa1067040:CDS 30.0%
TTGATTGATGCAATTCACAA+TGG - chr7_2:61245597-61245616 Msa1067040:CDS 30.0%
! CTTGTTATAGAAGAAGTTTG+AGG + chr7_2:61245677-61245696 None:intergenic 30.0%
TTGAAGTTTACTGAGGATTT+GGG + chr7_2:61245891-61245910 None:intergenic 30.0%
! TTTGAAGTTTACTGAGGATT+TGG + chr7_2:61245892-61245911 None:intergenic 30.0%
ATTCAGTCACTTGAGATAAA+TGG - chr7_2:61246040-61246059 Msa1067040:five_prime_UTR 30.0%
! ATAGTGATGGAATGGAAAGT+TGG + chr7_2:61242373-61242392 None:intergenic 35.0%
! GAAATGAGATAGTGATGGAA+TGG + chr7_2:61242381-61242400 None:intergenic 35.0%
GTTGTGAAATGAGATAGTGA+TGG + chr7_2:61242386-61242405 None:intergenic 35.0%
TTGTGGTTTAACGTGGAAAT+GGG + chr7_2:61242453-61242472 None:intergenic 35.0%
TTTGTGGTTTAACGTGGAAA+TGG + chr7_2:61242454-61242473 None:intergenic 35.0%
!! GTTTAGTTTGTGGTTTAACG+TGG + chr7_2:61242460-61242479 None:intergenic 35.0%
!! TGTGTTGTTACTTTCACTGT+TGG - chr7_2:61242883-61242902 Msa1067040:CDS 35.0%
!! GTGTTGTTACTTTCACTGTT+GGG - chr7_2:61242884-61242903 Msa1067040:CDS 35.0%
!! TGTTGTTACTTTCACTGTTG+GGG - chr7_2:61242885-61242904 Msa1067040:CDS 35.0%
AGTGTTCTTAATGCTATTGC+TGG - chr7_2:61242913-61242932 Msa1067040:CDS 35.0%
! TTGCCGCTTATTTGTATTGT+TGG - chr7_2:61242952-61242971 Msa1067040:CDS 35.0%
CCACCAACAATACAAATAAG+CGG + chr7_2:61242958-61242977 None:intergenic 35.0%
GGACCCAATTCTAATGATTA+TGG - chr7_2:61242976-61242995 Msa1067040:CDS 35.0%
! CTAATGATTATGGGACTAGT+AGG - chr7_2:61242986-61243005 Msa1067040:CDS 35.0%
!! TCAGACTGTTACTTGTTTTC+AGG - chr7_2:61243062-61243081 Msa1067040:intron 35.0%
!!! TTACTTGTTTTCAGGTTCGT+TGG - chr7_2:61243070-61243089 Msa1067040:intron 35.0%
! TAGCTTTTACCAAATCACAG+CGG + chr7_2:61243320-61243339 None:intergenic 35.0%
CAGTGAGTTTGACAAAATCA+TGG + chr7_2:61243389-61243408 None:intergenic 35.0%
ACTACATGTTTGAATTGGAG+TGG - chr7_2:61243424-61243443 Msa1067040:CDS 35.0%
CTACATGTTTGAATTGGAGT+GGG - chr7_2:61243425-61243444 Msa1067040:CDS 35.0%
TACACTTGGCTGTTGTAAAA+TGG - chr7_2:61243568-61243587 Msa1067040:CDS 35.0%
ACACTTGGCTGTTGTAAAAT+GGG - chr7_2:61243569-61243588 Msa1067040:CDS 35.0%
TGTCAGATACATAGTGACTT+TGG - chr7_2:61243618-61243637 Msa1067040:CDS 35.0%
AGGGTTTGTCAGAATTATAG+TGG - chr7_2:61243649-61243668 Msa1067040:CDS 35.0%
CAAAATCATGGTAAGCACTA+TGG - chr7_2:61243712-61243731 Msa1067040:CDS 35.0%
!!! TATGGTGATTGTTTTGACTG+TGG - chr7_2:61243931-61243950 Msa1067040:CDS 35.0%
CAGCCAATGCTTATATAAAC+AGG + chr7_2:61244048-61244067 None:intergenic 35.0%
AATTACTGAAAAGTGGGATG+AGG + chr7_2:61244158-61244177 None:intergenic 35.0%
CACGCTAATTACTGAAAAGT+GGG + chr7_2:61244164-61244183 None:intergenic 35.0%
ACACGCTAATTACTGAAAAG+TGG + chr7_2:61244165-61244184 None:intergenic 35.0%
!!! AAAGAATCTGGCTTTTGTGT+TGG - chr7_2:61244211-61244230 Msa1067040:intron 35.0%
! CATCGTGTTTAAAGCAAGTT+TGG + chr7_2:61244252-61244271 None:intergenic 35.0%
GTTTGAATTAGCTGCAAGTT+TGG - chr7_2:61244288-61244307 Msa1067040:intron 35.0%
TGAGATTGTTGAAGCTTCAA+AGG - chr7_2:61244330-61244349 Msa1067040:intron 35.0%
! AGTTTTTGTTAAAATCGGGG+TGG - chr7_2:61244355-61244374 Msa1067040:intron 35.0%
TGTGATTCTACCAAACTTAC+TGG - chr7_2:61244383-61244402 Msa1067040:intron 35.0%
TTTCTGGATTCCAGTAAGTT+TGG + chr7_2:61244396-61244415 None:intergenic 35.0%
TACGTTAACAAGTGCATTTC+TGG + chr7_2:61244412-61244431 None:intergenic 35.0%
TTAACGTATGTGTGAAGAAG+AGG - chr7_2:61244424-61244443 Msa1067040:CDS 35.0%
TTGTAGATTGAGTAACCACA+TGG - chr7_2:61244499-61244518 Msa1067040:CDS 35.0%
TGTAGATTGAGTAACCACAT+GGG - chr7_2:61244500-61244519 Msa1067040:CDS 35.0%
CCCATTTCATTGGAACTTAT+TGG - chr7_2:61244705-61244724 Msa1067040:intron 35.0%
CCCAATAAGTTCCAATGAAA+TGG + chr7_2:61244709-61244728 None:intergenic 35.0%
TTTAATGACTACAGCTCTGT+TGG - chr7_2:61244800-61244819 Msa1067040:intron 35.0%
TTAATGACTACAGCTCTGTT+GGG - chr7_2:61244801-61244820 Msa1067040:intron 35.0%
ACTTCTTCTCAAGAAAGAGA+AGG - chr7_2:61244829-61244848 Msa1067040:intron 35.0%
ATCAAAATGCATCCAAATGC+AGG + chr7_2:61244896-61244915 None:intergenic 35.0%
CTGCCTATGAAAATTACCAT+AGG - chr7_2:61244963-61244982 Msa1067040:intron 35.0%
! ACTTCAAAGGTTTTCCATCT+GGG + chr7_2:61244997-61245016 None:intergenic 35.0%
ACAGCATCTGTTGTATATGT+TGG + chr7_2:61245057-61245076 None:intergenic 35.0%
TCAAAAATTGAAATTGCCCG+AGG - chr7_2:61245126-61245145 Msa1067040:intron 35.0%
CAAAAATTGAAATTGCCCGA+GGG - chr7_2:61245127-61245146 Msa1067040:intron 35.0%
TGCAATATGGTTCAATTGGA+TGG - chr7_2:61245257-61245276 Msa1067040:intron 35.0%
ATCTTCCTGATAAACAATGG+AGG - chr7_2:61245507-61245526 Msa1067040:CDS 35.0%
TGTATCCTCCATTGTTTATC+AGG + chr7_2:61245515-61245534 None:intergenic 35.0%
ATCAAGAACTGGAATTACAC+TGG - chr7_2:61245573-61245592 Msa1067040:CDS 35.0%
ACAATGGTGAAGGAAAATGT+TGG - chr7_2:61245613-61245632 Msa1067040:CDS 35.0%
TCTTCACAGAATACCTGAAA+AGG + chr7_2:61245727-61245746 None:intergenic 35.0%
!!! TTTTCAGGTATTCTGTGAAG+AGG - chr7_2:61245726-61245745 Msa1067040:CDS 35.0%
CATTGAAGTGATTGTTCACA+AGG - chr7_2:61245804-61245823 Msa1067040:CDS 35.0%
TGAAGTTTACTGAGGATTTG+GGG + chr7_2:61245890-61245909 None:intergenic 35.0%
!! ACTGACTTTGAAGTTTACTG+AGG + chr7_2:61245898-61245917 None:intergenic 35.0%
! GTTGGTAAGAGTAAGACAGT+GGG + chr7_2:61242355-61242374 None:intergenic 40.0%
!! AGTTGGTAAGAGTAAGACAG+TGG + chr7_2:61242356-61242375 None:intergenic 40.0%
AAATGGGAAGAGACTAAGAG+GGG + chr7_2:61242437-61242456 None:intergenic 40.0%
GAAATGGGAAGAGACTAAGA+GGG + chr7_2:61242438-61242457 None:intergenic 40.0%
!! GTTGTTACTTTCACTGTTGG+GGG - chr7_2:61242886-61242905 Msa1067040:CDS 40.0%
!! TTGTTACTTTCACTGTTGGG+GGG - chr7_2:61242887-61242906 Msa1067040:CDS 40.0%
CCGCTTATTTGTATTGTTGG+TGG - chr7_2:61242955-61242974 Msa1067040:CDS 40.0%
!! TGGTGTTCCTGATTTTAGTC+AGG - chr7_2:61243026-61243045 Msa1067040:CDS 40.0%
CTCAACTCCTGACTAAAATC+AGG + chr7_2:61243036-61243055 None:intergenic 40.0%
!! CTGATTTTAGTCAGGAGTTG+AGG - chr7_2:61243034-61243053 Msa1067040:CDS 40.0%
CAGTGAGTTTGTCAGAATCA+CGG - chr7_2:61243198-61243217 Msa1067040:CDS 40.0%
CACTTGGCTGTTGTAAAATG+GGG - chr7_2:61243570-61243589 Msa1067040:CDS 40.0%
TAGTGACTTTGGTATCACAG+AGG - chr7_2:61243629-61243648 Msa1067040:CDS 40.0%
AGTGACTTTGGTATCACAGA+GGG - chr7_2:61243630-61243649 Msa1067040:CDS 40.0%
TAATTTAAGCGGGCACATTG+TGG - chr7_2:61243850-61243869 Msa1067040:CDS 40.0%
CAACTAAGTGCATGCATGTT+TGG + chr7_2:61243898-61243917 None:intergenic 40.0%
ATAGGCTGTGGTGAATAACT+TGG - chr7_2:61243966-61243985 Msa1067040:CDS 40.0%
TGAATTAGCTGCAAGTTTGG+TGG - chr7_2:61244291-61244310 Msa1067040:intron 40.0%
GAAGAAGAGGAACCGATTAT+TGG - chr7_2:61244437-61244456 Msa1067040:CDS 40.0%
GTAGATTGAGTAACCACATG+GGG - chr7_2:61244501-61244520 Msa1067040:CDS 40.0%
GCAGTAAAACCTGTACTAGT+AGG - chr7_2:61244566-61244585 Msa1067040:intron 40.0%
GTAAAACCTGTACTAGTAGG+TGG - chr7_2:61244569-61244588 Msa1067040:intron 40.0%
AAGTTCCAATGAAATGGGGA+TGG + chr7_2:61244703-61244722 None:intergenic 40.0%
GTAGTCATTAAAAATGGGGC+CGG + chr7_2:61244792-61244811 None:intergenic 40.0%
! CATCTGGGACAAATATCCTA+TGG + chr7_2:61244982-61245001 None:intergenic 40.0%
CATAGGATATTTGTCCCAGA+TGG - chr7_2:61244980-61244999 Msa1067040:intron 40.0%
! GACTTCAAAGGTTTTCCATC+TGG + chr7_2:61244998-61245017 None:intergenic 40.0%
!! TCTTTTGGTGCAGACTTCAA+AGG + chr7_2:61245010-61245029 None:intergenic 40.0%
GCTGATAAAATCTTGTTGGC+AGG - chr7_2:61245221-61245240 Msa1067040:intron 40.0%
GATGCAATTCACAATGGTGA+AGG - chr7_2:61245603-61245622 Msa1067040:CDS 40.0%
AGGAAAATGTTGGACAACCA+AGG - chr7_2:61245623-61245642 Msa1067040:CDS 40.0%
! TTCATGCATGCTTCCTTTTC+AGG - chr7_2:61245711-61245730 Msa1067040:CDS 40.0%
AAGCAAAGAGTTGCTTGAGT+GGG - chr7_2:61245834-61245853 Msa1067040:CDS 40.0%
GAAGTTTACTGAGGATTTGG+GGG + chr7_2:61245889-61245908 None:intergenic 40.0%
GGAAATGGGAAGAGACTAAG+AGG + chr7_2:61242439-61242458 None:intergenic 45.0%
CATGAAACGACGTCGTTGTT+TGG + chr7_2:61242607-61242626 None:intergenic 45.0%
GGTCCAAACATGCATACACT+TGG - chr7_2:61243554-61243573 Msa1067040:CDS 45.0%
CAGCCAAGTGTATGCATGTT+TGG + chr7_2:61243560-61243579 None:intergenic 45.0%
AAAGTGGGATGAGGAATACC+AGG + chr7_2:61244078-61244097 None:intergenic 45.0%
ACAGGATCACGACTGAAAGT+GGG + chr7_2:61244093-61244112 None:intergenic 45.0%
! CTGCAAGTTTGGTGGAATCA+TGG - chr7_2:61244299-61244318 Msa1067040:intron 45.0%
! CAAGTTTGGTGGAATCATGG+TGG - chr7_2:61244302-61244321 Msa1067040:intron 45.0%
ATTGAGTAACCACATGGGGT+TGG - chr7_2:61244505-61244524 Msa1067040:CDS 45.0%
TTAGGACCACCTACTAGTAC+AGG + chr7_2:61244578-61244597 None:intergenic 45.0%
TAGTAGGTGGTCCTAAACTG+AGG - chr7_2:61244582-61244601 Msa1067040:intron 45.0%
AGTAGGTGGTCCTAAACTGA+GGG - chr7_2:61244583-61244602 Msa1067040:intron 45.0%
TGCATCAGCTAGTTCGACAA+AGG + chr7_2:61244627-61244646 None:intergenic 45.0%
!! TTATTGGGGTGCTGTGAGTA+CGG - chr7_2:61244721-61244740 Msa1067040:intron 45.0%
ATTAGCAACCACAACCCGAT+CGG + chr7_2:61244870-61244889 None:intergenic 45.0%
! GTTGCTAATGGACCTGCATT+TGG - chr7_2:61244881-61244900 Msa1067040:intron 45.0%
ACTGCTGTAATTGCTGAGAC+AGG - chr7_2:61245085-61245104 Msa1067040:intron 45.0%
CTGCTGTAATTGCTGAGACA+GGG - chr7_2:61245086-61245105 Msa1067040:intron 45.0%
TGCTGTAATTGCTGAGACAG+GGG - chr7_2:61245087-61245106 Msa1067040:intron 45.0%
GGTTCAATTGGATGGTCTGT+TGG - chr7_2:61245265-61245284 Msa1067040:intron 45.0%
AAGCGAGTGATTGCTTGCAT+TGG - chr7_2:61245322-61245341 Msa1067040:intron 45.0%
! GTGATTGCTTGCATTGGTGA+TGG - chr7_2:61245328-61245347 Msa1067040:intron 45.0%
!! CATTGGTGATGGAAGCTTTC+AGG - chr7_2:61245339-61245358 Msa1067040:intron 45.0%
TGCTTTACAGGTAACTGCAC+AGG - chr7_2:61245446-61245465 Msa1067040:CDS 45.0%
CAATGGAGGATACACCATTG+AGG - chr7_2:61245521-61245540 Msa1067040:CDS 45.0%
CAATGTCAAGTGACTCACCT+TGG + chr7_2:61245643-61245662 None:intergenic 45.0%
TTTCTTTGGTCCTGTTGCTG+TGG + chr7_2:61245770-61245789 None:intergenic 45.0%
CAAGCAAAGAGTTGCTTGAG+TGG - chr7_2:61245833-61245852 Msa1067040:CDS 45.0%
AGCAAAGAGTTGCTTGAGTG+GGG - chr7_2:61245835-61245854 Msa1067040:CDS 45.0%
TTTACTGAGGATTTGGGGGA+CGG + chr7_2:61245885-61245904 None:intergenic 45.0%
! GACACTGTTACTTAGTCCCT+AGG - chr7_2:61246171-61246190 Msa1067040:five_prime_UTR 45.0%
! GTAAGACAGTGGGAGGTACA+TGG + chr7_2:61242345-61242364 None:intergenic 50.0%
GGTAAGAGTAAGACAGTGGG+AGG + chr7_2:61242352-61242371 None:intergenic 50.0%
!! TGACGCCGACTTGGACTAAT+CGG + chr7_2:61242714-61242733 None:intergenic 50.0%
ATTGACGAGATGGTCGAGGA+GGG + chr7_2:61242773-61242792 None:intergenic 50.0%
GTTCATTGACGAGATGGTCG+AGG + chr7_2:61242777-61242796 None:intergenic 50.0%
CGACCATCTCGTCAATGAAC+CGG - chr7_2:61242777-61242796 Msa1067040:intron 50.0%
TGCTGTAACGAGCTGAATGC+AGG - chr7_2:61242817-61242836 Msa1067040:intron 50.0%
CGAGCTGAATGCAGGTTATG+CGG - chr7_2:61242825-61242844 Msa1067040:intron 50.0%
AATGCAGGTTATGCGGCTGA+CGG - chr7_2:61242832-61242851 Msa1067040:intron 50.0%
GTGACTTTGCCGCTGTGATT+TGG - chr7_2:61243308-61243327 Msa1067040:intron 50.0%
!! AGCATTGGCTGTAACTTGCC+TGG - chr7_2:61244057-61244076 Msa1067040:intron 50.0%
TCACGACTGAAAGTGGGATG+AGG + chr7_2:61244087-61244106 None:intergenic 50.0%
GACAGGATCACGACTGAAAG+TGG + chr7_2:61244094-61244113 None:intergenic 50.0%
ACTTGGGAGCGAGTGAGAAA+GGG + chr7_2:61244116-61244135 None:intergenic 50.0%
TACTTGGGAGCGAGTGAGAA+AGG + chr7_2:61244117-61244136 None:intergenic 50.0%
! GCTTTTGCCACCCTCAGTTT+AGG + chr7_2:61244596-61244615 None:intergenic 50.0%
GTCGAACTAGCTGATGCAAG+TGG - chr7_2:61244629-61244648 Msa1067040:intron 50.0%
CCCTTTAGCTGATGGCATCA+CGG + chr7_2:61244666-61244685 None:intergenic 50.0%
CCGTGATGCCATCAGCTAAA+GGG - chr7_2:61244663-61244682 Msa1067040:intron 50.0%
GATGCCATCAGCTAAAGGGA+TGG - chr7_2:61244667-61244686 Msa1067040:intron 50.0%
TGAAATGGGGATGGTGCTCA+GGG + chr7_2:61244694-61244713 None:intergenic 50.0%
ATGAAATGGGGATGGTGCTC+AGG + chr7_2:61244695-61244714 None:intergenic 50.0%
GAGCACCATCCCCATTTCAT+TGG - chr7_2:61244695-61244714 Msa1067040:intron 50.0%
GCTGACGCATACTTGTTTGC+CGG - chr7_2:61244770-61244789 Msa1067040:intron 50.0%
CAATCATTGTGCAGCCCGAT+CGG - chr7_2:61244852-61244871 Msa1067040:intron 50.0%
AATCATTGTGCAGCCCGATC+GGG - chr7_2:61244853-61244872 Msa1067040:intron 50.0%
TTAGCAACCACAACCCGATC+GGG + chr7_2:61244869-61244888 None:intergenic 50.0%
! GATCGGGTTGTGGTTGCTAA+TGG - chr7_2:61244869-61244888 Msa1067040:intron 50.0%
GACGCTTTGCAAGTGCCTTT+AGG + chr7_2:61244928-61244947 None:intergenic 50.0%
TTGAAATTGCCCGAGGGATG+TGG - chr7_2:61245133-61245152 Msa1067040:intron 50.0%
TGAAATTGCCCGAGGGATGT+GGG - chr7_2:61245134-61245153 Msa1067040:intron 50.0%
AACACTTACCCACATCCCTC+GGG + chr7_2:61245145-61245164 None:intergenic 50.0%
GAACACTTACCCACATCCCT+CGG + chr7_2:61245146-61245165 None:intergenic 50.0%
TGGTCTGTTGGTGCAACTCT+TGG - chr7_2:61245277-61245296 Msa1067040:intron 50.0%
AAGCAATCACTCGCTTCTCG+GGG + chr7_2:61245318-61245337 None:intergenic 50.0%
CAAGCAATCACTCGCTTCTC+GGG + chr7_2:61245319-61245338 None:intergenic 50.0%
GCAAGCAATCACTCGCTTCT+CGG + chr7_2:61245320-61245339 None:intergenic 50.0%
GAAGCAATTGCCACAGCAAC+AGG - chr7_2:61245757-61245776 Msa1067040:CDS 50.0%
! GCACGCCGATTAGTCCAAGT+CGG - chr7_2:61242706-61242725 Msa1067040:CDS 55.0%
CATTGACGAGATGGTCGAGG+AGG + chr7_2:61242774-61242793 None:intergenic 55.0%
GCTCCGGTTCATTGACGAGA+TGG + chr7_2:61242783-61242802 None:intergenic 55.0%
GAACCGGAGCTGAACCTCAT+CGG - chr7_2:61242793-61242812 Msa1067040:intron 55.0%
CAACCGATGAGGTTCAGCTC+CGG + chr7_2:61242799-61242818 None:intergenic 55.0%
GCTCGTTACAGCAACCGATG+AGG + chr7_2:61242810-61242829 None:intergenic 55.0%
ATGCGGCTGACGGTTATGCT+CGG - chr7_2:61242842-61242861 Msa1067040:intron 55.0%
TATGCTCGGTCACGTGGTGT+CGG - chr7_2:61242856-61242875 Msa1067040:intron 55.0%
AGGTGGTCCTAAACTGAGGG+TGG - chr7_2:61244586-61244605 Msa1067040:intron 55.0%
GCCGTGATGCCATCAGCTAA+AGG - chr7_2:61244662-61244681 Msa1067040:intron 55.0%
GGGACCATCCCTTTAGCTGA+TGG + chr7_2:61244674-61244693 None:intergenic 55.0%
TTGCTGAGACAGGGGACTCA+TGG - chr7_2:61245095-61245114 Msa1067040:intron 55.0%
! GTGTCGACAATGCTGCGATG+TGG - chr7_2:61245471-61245490 Msa1067040:CDS 55.0%
AGGATTTGGGGGACGGCTAT+TGG + chr7_2:61245878-61245897 None:intergenic 55.0%
! ATCGCGGTGGCTGGTTGGAT+CGG + chr7_2:61242652-61242671 None:intergenic 60.0%
CTAATCGGCGTGCGAGATGG+CGG + chr7_2:61242699-61242718 None:intergenic 60.0%
GGACTAATCGGCGTGCGAGA+TGG + chr7_2:61242702-61242721 None:intergenic 60.0%
ACCGACGTCTTCTCCGTTCC+CGG - chr7_2:61242733-61242752 Msa1067040:CDS 60.0%
GAGGTTGAAGTCGCCGGGAA+CGG + chr7_2:61242749-61242768 None:intergenic 60.0%
AGGGTGAGGTTGAAGTCGCC+GGG + chr7_2:61242754-61242773 None:intergenic 60.0%
GAGGGTGAGGTTGAAGTCGC+CGG + chr7_2:61242755-61242774 None:intergenic 60.0%
GACGGTTATGCTCGGTCACG+TGG - chr7_2:61242850-61242869 Msa1067040:intron 60.0%
GGAGCGAGTGAGAAAGGGAC+AGG + chr7_2:61244111-61244130 None:intergenic 60.0%
! CTGCTGCTTCCAACCCCATG+TGG + chr7_2:61244517-61244536 None:intergenic 60.0%
GGGGTTGGAAGCAGCAGTTG+AGG - chr7_2:61244520-61244539 Msa1067040:CDS 60.0%
AGTTGCTTGAGTGGGGCTCC+AGG - chr7_2:61245842-61245861 Msa1067040:CDS 60.0%
GTTGCTTGAGTGGGGCTCCA+GGG - chr7_2:61245843-61245862 Msa1067040:CDS 60.0%
GCTATTGGCAGCAGAGACCC+TGG + chr7_2:61245863-61245882 None:intergenic 60.0%
! GGTGGCTGGTTGGATCGGAG+AGG + chr7_2:61242647-61242666 None:intergenic 65.0%
GCCTCCTGCGACGCTACACT+CGG - chr7_2:61242673-61242692 Msa1067040:CDS 65.0%
! AGACGTCGGTGACGCCGACT+TGG + chr7_2:61242723-61242742 None:intergenic 65.0%
GCCGGGAACGGAGAAGACGT+CGG + chr7_2:61242737-61242756 None:intergenic 65.0%
CGAGATGGTCGAGGAGGGTG+AGG + chr7_2:61242768-61242787 None:intergenic 65.0%
! TGTGCAGCCCGATCGGGTTG+TGG - chr7_2:61244859-61244878 Msa1067040:intron 65.0%
AGGCGATCGCGGTGGCTGGT+TGG + chr7_2:61242657-61242676 None:intergenic 70.0%
AGCGTCGCAGGAGGCGATCG+CGG + chr7_2:61242668-61242687 None:intergenic 70.0%
GCCGAGTGTAGCGTCGCAGG+AGG + chr7_2:61242677-61242696 None:intergenic 70.0%
CAGGAGGCGATCGCGGTGGC+TGG + chr7_2:61242661-61242680 None:intergenic 75.0%
GTCGCAGGAGGCGATCGCGG+TGG + chr7_2:61242665-61242684 None:intergenic 75.0%
GCGGCCGAGTGTAGCGTCGC+AGG + chr7_2:61242680-61242699 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 61242311 61246210 61242311 ID=Msa1067040;Name=Msa1067040
chr7_2 mRNA 61242311 61246210 61242311 ID=Msa1067040-mRNA-1;Parent=Msa1067040;Name=Msa1067040-mRNA-1;_AED=0.02;_eAED=0.02;_QI=254|1|1|1|1|1|6|307|603
chr7_2 exon 61242311 61242788 61242311 ID=Msa1067040-mRNA-1:exon:12327;Parent=Msa1067040-mRNA-1
chr7_2 exon 61242877 61243065 61242877 ID=Msa1067040-mRNA-1:exon:12326;Parent=Msa1067040-mRNA-1
chr7_2 exon 61243161 61243278 61243161 ID=Msa1067040-mRNA-1:exon:12325;Parent=Msa1067040-mRNA-1
chr7_2 exon 61243366 61244016 61243366 ID=Msa1067040-mRNA-1:exon:12324;Parent=Msa1067040-mRNA-1
chr7_2 exon 61244388 61244551 61244388 ID=Msa1067040-mRNA-1:exon:12323;Parent=Msa1067040-mRNA-1
chr7_2 exon 61245438 61246210 61245438 ID=Msa1067040-mRNA-1:exon:12322;Parent=Msa1067040-mRNA-1
chr7_2 five_prime_UTR 61245957 61246210 61245957 ID=Msa1067040-mRNA-1:five_prime_utr;Parent=Msa1067040-mRNA-1
chr7_2 CDS 61245438 61245956 61245438 ID=Msa1067040-mRNA-1:cds;Parent=Msa1067040-mRNA-1
chr7_2 CDS 61244388 61244551 61244388 ID=Msa1067040-mRNA-1:cds;Parent=Msa1067040-mRNA-1
chr7_2 CDS 61243366 61244016 61243366 ID=Msa1067040-mRNA-1:cds;Parent=Msa1067040-mRNA-1
chr7_2 CDS 61243161 61243278 61243161 ID=Msa1067040-mRNA-1:cds;Parent=Msa1067040-mRNA-1
chr7_2 CDS 61242877 61243065 61242877 ID=Msa1067040-mRNA-1:cds;Parent=Msa1067040-mRNA-1
chr7_2 CDS 61242618 61242788 61242618 ID=Msa1067040-mRNA-1:cds;Parent=Msa1067040-mRNA-1
chr7_2 three_prime_UTR 61242311 61242617 61242311 ID=Msa1067040-mRNA-1:three_prime_utr;Parent=Msa1067040-mRNA-1
Gene Sequence

>Msa1067040

ATGTCCACAATGTTAGGATCTTTAGATATAACAAAAGCACCAAACAACGACGTCGTTTCATGCACAAAACAAAACAGCACCTCTCCGATCCAACCAGCCACCGCGATCGCCTCCTGCGACGCTACACTCGGCCGCCATCTCGCACGCCGATTAGTCCAAGTCGGCGTCACCGACGTCTTCTCCGTTCCCGGCGACTTCAACCTCACCCTCCTCGACCATCTCGTCAATGAACCGGAGCTGAACCTCATCGGTTGCTGTAACGAGCTGAATGCAGGTTATGCGGCTGACGGTTATGCTCGGTCACGTGGTGTCGGTGCTTGTGTTGTTACTTTCACTGTTGGGGGGTTGAGTGTTCTTAATGCTATTGCTGGTGCTTACAGTGAGAATTTGCCGCTTATTTGTATTGTTGGTGGACCCAATTCTAATGATTATGGGACTAGTAGGATTCTTCATCATACTATTGGTGTTCCTGATTTTAGTCAGGAGTTGAGGTGTTTTCAGACTGTTACTTGTTTTCAGGCTGTGGTGAATAACTTGGAAGATGCTCATGAGTTGATTGATACTGCGATTTCAACTGCATTGAAAGAGAGCAAGCCTGTTTATATAAGCATTGGCTGTAACTTGCCTGGTATTCCTCATCCCACTTTCAGTCGTGATCCTGTCCCTTTCTCACTCGCTCCCAAATTGAGTAACCACATGGGGTTGGAAGCAGCAGTTGAGGCAGCAGCAGAGTTTCTTAACAAAGCAGTAAAACCTGTACTAGTAGGTGGTCCTAAACTGAGGGTGGCAAAAGCATCTGATGCCTTTGTCGAACTAGCTGATGCAAGTGGTTACGCACTTGCCGTGATGCCATCAGCTAAAGGGATGGTCCCTGAGCACCATCCCCATTTCATTGGAACTTATTGGGGTGCTGTGAGTACGGCATTCTGTGCTGAGATTGTAGAATCTGCTGACGCATACTTGTTTGCCGGCCCCATTTTTAATGACTACAGCTCTGTTGGGTATTCACTTCTTCTCAAGAAAGAGAAGGCAATCATTGTGCAGCCCGATCGGGTTGTGGTTGCTAATGGACCTGCATTTGGATGCATTTTGATGAAGGATTTCCTAAAGGCACTTGCAAAGCGTCTCAAACACAACAATGCTGCCTATGAAAATTACCATAGGATATTTGTCCCAGATGGAAAACCTTTGAAGTCTGCACCAAAAGAACCTTTGAGAGTTAATGTTATGTTCCAACATATACAACAGATGCTGTCGAGTGAAACTGCTGTAATTGCTGAGACAGGGGACTCATGGTTTAACTGTCAAAAATTGAAATTGCCCGAGGGATGTGGGTATGAGTTTCAAATGCAATATGGTTCAATTGGATGGTCTGTTGGTGCAACTCTTGGCTATGCACAAGCTGTCCCCGAGAAGCGAGTGATTGCTTGCATTGGTGATGGAAGCTTTCAGGTAACTGCACAGGATGTGTCGACAATGCTGCGATGTGGTCAGAAAACCATCATCTTCCTGATAAACAATGGAGGATACACCATTGAGGTTGAAATTCATGATGGACCATACAATGTTATCAAGAACTGGAATTACACTGGATTGATTGATGCAATTCACAATGGTGAAGGAAAATGTTGGACAACCAAGGTATTCTGTGAAGAGGAATTAGTTGAAGCAATTGCCACAGCAACAGGACCAAAGAAAGATAGCTTATGTTTCATTGAAGTGATTGTTCACAAGGATGACACAAGCAAAGAGTTGCTTGAGTGGGGCTCCAGGGTCTCTGCTGCCAATAGCCGTCCCCCAAATCCTCAGTAA

Protein sequence

>Msa1067040

MSTMLGSLDITKAPNNDVVSCTKQNSTSPIQPATAIASCDATLGRHLARRLVQVGVTDVFSVPGDFNLTLLDHLVNEPELNLIGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPLICIVGGPNSNDYGTSRILHHTIGVPDFSQELRCFQTVTCFQAVVNNLEDAHELIDTAISTALKESKPVYISIGCNLPGIPHPTFSRDPVPFSLAPKLSNHMGLEAAVEAAAEFLNKAVKPVLVGGPKLRVAKASDAFVELADASGYALAVMPSAKGMVPEHHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVVVANGPAFGCILMKDFLKALAKRLKHNNAAYENYHRIFVPDGKPLKSAPKEPLRVNVMFQHIQQMLSSETAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGSIGWSVGATLGYAQAVPEKRVIACIGDGSFQVTAQDVSTMLRCGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLIDAIHNGEGKCWTTKVFCEEELVEAIATATGPKKDSLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ*