Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1450710 | sp|O82647|PDC1_ARATH | 85.222 | 609 | 82 | 2 | 1 | 603 | 1 | 607 | 0.0 | 1073 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1450710 | A0A396H177 | 97.512 | 603 | 15 | 0 | 1 | 603 | 1 | 603 | 0.0 | 1226 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025060 | Msa1450710 | -0.801912 | 7.196885e-49 | -8.615850e-47 |
| Msa0089540 | Msa1450710 | 0.813020 | 3.162159e-51 | -8.615850e-47 |
| Msa1426690 | Msa1450710 | -0.813637 | 2.314313e-51 | -8.615850e-47 |
| Msa1433060 | Msa1450710 | -0.822151 | 2.761746e-53 | -8.615850e-47 |
| Msa0708840 | Msa1450710 | -0.801016 | 1.098430e-48 | -8.615850e-47 |
| Msa0742690 | Msa1450710 | -0.810814 | 9.557209e-51 | -8.615850e-47 |
| Msa0779830 | Msa1450710 | -0.806681 | 7.310020e-50 | -8.615850e-47 |
| Msa0827560 | Msa1450710 | -0.818367 | 2.033657e-52 | -8.615850e-47 |
| Msa0192890 | Msa1450710 | 0.870494 | 1.398962e-66 | -8.615850e-47 |
| Msa0235020 | Msa1450710 | 0.802926 | 4.448131e-49 | -8.615850e-47 |
| Msa0432260 | Msa1450710 | -0.819713 | 1.005391e-52 | -8.615850e-47 |
| Msa0476730 | Msa1450710 | -0.814554 | 1.452388e-51 | -8.615850e-47 |
| Msa1067040 | Msa1450710 | 0.855996 | 4.334638e-62 | -8.615850e-47 |
| Msa0258280 | Msa1450710 | -0.818687 | 1.720863e-52 | -8.615850e-47 |
| Msa0273420 | Msa1450710 | 0.811481 | 6.852966e-51 | -8.615850e-47 |
| Msa0297320 | Msa1450710 | -0.800775 | 1.230109e-48 | -8.615850e-47 |
| Msa0313680 | Msa1450710 | 0.853812 | 1.865225e-61 | -8.615850e-47 |
| Msa1108960 | Msa1450710 | 0.922691 | 7.074440e-89 | -8.615850e-47 |
| Msa1152860 | Msa1450710 | 0.858055 | 1.070783e-62 | -8.615850e-47 |
| Msa1203090 | Msa1450710 | -0.823665 | 1.225873e-53 | -8.615850e-47 |
| Msa0862750 | Msa1450710 | -0.811384 | 7.193503e-51 | -8.615850e-47 |
| Msa0871620 | Msa1450710 | 0.800220 | 1.596158e-48 | -8.615850e-47 |
| Msa0947420 | Msa1450710 | 0.807078 | 6.025611e-50 | -8.615850e-47 |
| Msa0974250 | Msa1450710 | 0.807544 | 4.800143e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1450710 | MtrunA17_Chr7g0242961 | 97.512 | 603 | 15 | 0 | 1 | 603 | 1 | 603 | 0.0 | 1226 |
| Msa1450710 | MtrunA17_Chr7g0242981 | 89.256 | 605 | 47 | 3 | 1 | 603 | 1 | 589 | 0.0 | 1098 |
| Msa1450710 | MtrunA17_Chr4g0007071 | 85.667 | 607 | 83 | 3 | 1 | 603 | 1 | 607 | 0.0 | 1071 |
| Msa1450710 | MtrunA17_Chr5g0420011 | 85.338 | 607 | 85 | 3 | 1 | 603 | 1 | 607 | 0.0 | 1068 |
| Msa1450710 | MtrunA17_Chr2g0283471 | 81.424 | 576 | 103 | 1 | 28 | 603 | 11 | 582 | 0.0 | 989 |
| Msa1450710 | MtrunA17_Chr2g0279461 | 59.109 | 247 | 67 | 2 | 10 | 228 | 25 | 265 | 1.58e-97 | 298 |
| Msa1450710 | MtrunA17_Chr2g0279471 | 71.552 | 116 | 33 | 0 | 485 | 600 | 17 | 132 | 1.57e-53 | 179 |
| Msa1450710 | MtrunA17_Chr3g0132201 | 24.070 | 511 | 338 | 18 | 47 | 531 | 84 | 570 | 7.54e-18 | 87.4 |
| Msa1450710 | MtrunA17_Chr2g0281881 | 22.612 | 513 | 343 | 16 | 47 | 531 | 88 | 574 | 2.10e-15 | 79.7 |
| Msa1450710 | MtrunA17_Chr2g0290681 | 23.248 | 585 | 365 | 21 | 26 | 558 | 38 | 590 | 8.09e-15 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1450710 | AT4G33070.1 | 85.222 | 609 | 82 | 2 | 1 | 603 | 1 | 607 | 0.0 | 1073 |
| Msa1450710 | AT5G54960.1 | 83.908 | 609 | 90 | 3 | 1 | 603 | 1 | 607 | 0.0 | 1068 |
| Msa1450710 | AT5G01320.1 | 83.278 | 604 | 99 | 2 | 1 | 603 | 1 | 603 | 0.0 | 1055 |
| Msa1450710 | AT5G01330.1 | 82.383 | 596 | 101 | 1 | 8 | 603 | 1 | 592 | 0.0 | 1027 |
| Msa1450710 | AT5G17380.1 | 24.351 | 501 | 309 | 19 | 47 | 509 | 18 | 486 | 8.64e-18 | 87.4 |
| Msa1450710 | AT3G48560.1 | 22.417 | 513 | 344 | 15 | 47 | 531 | 103 | 589 | 4.73e-13 | 72.8 |
Find 188 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGGTGATGGAAGCTTTC+AGG | 0.099113 | tig0033038:+31287 | Msa1450710:CDS |
| CCCATTTCATTGGAACTTAT+TGG | 0.122987 | tig0033038:+30655 | Msa1450710:CDS |
| TCAGACTGTTACGTGCTTTC+AGG | 0.161858 | tig0033038:+28997 | Msa1450710:CDS |
| CCATTTCATTGGAACTTATT+GGG | 0.218907 | tig0033038:+30656 | Msa1450710:CDS |
| CTAATATACTTTGCTGCTTC+AGG | 0.223823 | tig0033038:+32046 | Msa1450710:three_prime_UTR |
| GGACCCAATTCTAATGATTA+TGG | 0.232316 | tig0033038:+28911 | Msa1450710:CDS |
| TACTTGGGAGCGAGTGAAAA+AGG | 0.254142 | tig0033038:-30064 | None:intergenic |
| AGGGGTTATTATATACTAAA+AGG | 0.265507 | tig0033038:-28351 | None:intergenic |
| AAACATAAGCTATCTTTCTT+TGG | 0.266263 | tig0033038:-31730 | None:intergenic |
| TCTGAAGTTTACTGAGGATT+TGG | 0.266713 | tig0033038:-31838 | None:intergenic |
| GTCTATTGTTGTTACATTGC+TGG | 0.266809 | tig0033038:+31865 | Msa1450710:three_prime_UTR |
| CTGAAGTTTACTGAGGATTT+GGG | 0.267884 | tig0033038:-31837 | None:intergenic |
| TTTGATGGATATTTAAAGTA+TGG | 0.270139 | tig0033038:-28440 | None:intergenic |
| TGTATCCTCCATTGTTTATC+AGG | 0.271932 | tig0033038:-31461 | None:intergenic |
| CCCAATAAGTTCCAATGAAA+TGG | 0.289567 | tig0033038:-30656 | None:intergenic |
| ATTCAGTCACTTGAGATAAA+TGG | 0.298734 | tig0033038:+32001 | Msa1450710:three_prime_UTR |
| GATCGGGTTGTGGTTGCTAA+TGG | 0.314935 | tig0033038:+30819 | Msa1450710:CDS |
| CGGACAATGGCATATCTAAA+AGG | 0.316865 | tig0033038:-31917 | None:intergenic |
| TTAACTCTCAGAGGTTCTTT+TGG | 0.317631 | tig0033038:-30972 | None:intergenic |
| GCTGATGCATACTTGTTTGC+TGG | 0.342254 | tig0033038:+30720 | Msa1450710:CDS |
| TTTGTGGTTTAACGTGGAAA+TGG | 0.344615 | tig0033038:-28386 | None:intergenic |
| CAAATGCAATATGGTTCAAT+TGG | 0.346194 | tig0033038:+31201 | Msa1450710:CDS |
| AGGATTCTTCATCATACTAT+TGG | 0.352361 | tig0033038:+28941 | Msa1450710:CDS |
| GTTGCTAATGGACCTGCATT+TGG | 0.356868 | tig0033038:+30831 | Msa1450710:CDS |
| AACAAAATGTCCACAATGTT+AGG | 0.362479 | tig0033038:+28494 | Msa1450710:exon |
| AGTCCCATAATCATTAGAAT+TGG | 0.362617 | tig0033038:-28915 | None:intergenic |
| CAAGCAATCACTCGCTTCTC+GGG | 0.364950 | tig0033038:-31264 | None:intergenic |
| TATGAGTTTCAAATGCAATA+TGG | 0.365373 | tig0033038:+31192 | Msa1450710:CDS |
| ATGAAATGGGGATGGTGCTC+AGG | 0.369145 | tig0033038:-30642 | None:intergenic |
| CATGAAACGACGTCGTTGTT+TGG | 0.370477 | tig0033038:-28539 | None:intergenic |
| CAGCCAATGCTTATATAAAC+AGG | 0.374707 | tig0033038:-29995 | None:intergenic |
| GTGTTGTTACGTTCACTGTT+GGG | 0.380795 | tig0033038:+28819 | Msa1450710:CDS |
| CAGTTCTTGATAACATTGTA+TGG | 0.391023 | tig0033038:-31510 | None:intergenic |
| CCAATAAGTTCCAATGAAAT+GGG | 0.391316 | tig0033038:-30655 | None:intergenic |
| TTGCCGCTTATTTGTATTGT+TGG | 0.393601 | tig0033038:+28887 | Msa1450710:CDS |
| GAGCACCATCCCCATTTCAT+TGG | 0.394834 | tig0033038:+30645 | Msa1450710:CDS |
| GCAAGCAATCACTCGCTTCT+CGG | 0.396937 | tig0033038:-31265 | None:intergenic |
| GAAGCAATTGCCACAGCAAC+AGG | 0.397655 | tig0033038:+31706 | Msa1450710:CDS |
| CTAATGATTATGGGACTAGT+AGG | 0.404499 | tig0033038:+28921 | Msa1450710:CDS |
| ACCGACGTCTTCTCCGTTCC+CGG | 0.411535 | tig0033038:+28668 | Msa1450710:CDS |
| GACGCTTCGAAAGTGCCTTT+AGG | 0.416508 | tig0033038:-30875 | None:intergenic |
| AGTTGCTTGAGTGGGGCTCC+AGG | 0.424677 | tig0033038:+31791 | Msa1450710:CDS |
| TTTAATGACTACAGCTCTGT+TGG | 0.425890 | tig0033038:+30750 | Msa1450710:CDS |
| GGAAATGGGAAGAGACTAAG+AGG | 0.431478 | tig0033038:-28371 | None:intergenic |
| GGGGTTATTATATACTAAAA+GGG | 0.433558 | tig0033038:-28350 | None:intergenic |
| CAGGAGGCGATCGCGGTGGC+TGG | 0.435574 | tig0033038:-28593 | None:intergenic |
| GACCCAATTCTAATGATTAT+GGG | 0.436897 | tig0033038:+28912 | Msa1450710:CDS |
| GGGTTATTATATACTAAAAG+GGG | 0.441988 | tig0033038:-28349 | None:intergenic |
| TTGTGGTTTAACGTGGAAAT+GGG | 0.442454 | tig0033038:-28385 | None:intergenic |
| CATGGTATCTTCTTCAATAC+AGG | 0.443052 | tig0033038:+28245 | None:intergenic |
| TTGAAATTACCCGAGGGATG+TGG | 0.443542 | tig0033038:+31083 | Msa1450710:CDS |
| ATTGTTTATCAGGAAGATGA+TGG | 0.443596 | tig0033038:-31451 | None:intergenic |
| CATACAATGTTATCAAGAAC+TGG | 0.450936 | tig0033038:+31511 | Msa1450710:CDS |
| CTCAACTCCTGACTAAAATC+AGG | 0.453988 | tig0033038:-28968 | None:intergenic |
| AGGCGATCGCGGTGGCTGGT+TGG | 0.460812 | tig0033038:-28589 | None:intergenic |
| GTCCCATAATCATTAGAATT+GGG | 0.462038 | tig0033038:-28914 | None:intergenic |
| ATCAAAATGCATCCAAATGC+AGG | 0.464273 | tig0033038:-30843 | None:intergenic |
| CATAGGATATTTGTTCCAGA+TGG | 0.466359 | tig0033038:+30930 | Msa1450710:CDS |
| AAGCGTGAGGTTGAAGTCGC+CGG | 0.474328 | tig0033038:-28687 | None:intergenic |
| TGTGTTGTTACGTTCACTGT+TGG | 0.474626 | tig0033038:+28818 | Msa1450710:CDS |
| CAATCATTGTGCAGCCCGAT+CGG | 0.474852 | tig0033038:+30802 | Msa1450710:CDS |
| TGGTCTGTTGGTGCAACTCT+TGG | 0.476946 | tig0033038:+31225 | Msa1450710:CDS |
| CCGTGATGCCATCAGCTAAA+GGG | 0.477384 | tig0033038:+30613 | Msa1450710:CDS |
| CATTTCATTGGAACTTATTG+GGG | 0.478426 | tig0033038:+30657 | Msa1450710:CDS |
| TTTGATGAAGGATTTCCTAA+AGG | 0.483996 | tig0033038:+30860 | Msa1450710:CDS |
| CCGCTTATTTGTATTGTTGG+TGG | 0.484728 | tig0033038:+28890 | Msa1450710:CDS |
| GGTTATTATATACTAAAAGG+GGG | 0.485038 | tig0033038:-28348 | None:intergenic |
| TGCAATATGGTTCAATTGGA+TGG | 0.486831 | tig0033038:+31205 | Msa1450710:CDS |
| TTGGGACCACCTACTAGTAC+AGG | 0.490734 | tig0033038:-30525 | None:intergenic |
| TTAATGACTACAGCTCTGTT+GGG | 0.491232 | tig0033038:+30751 | Msa1450710:CDS |
| GTTATTATATACTAAAAGGG+GGG | 0.491386 | tig0033038:-28347 | None:intergenic |
| ACAACATCTGTTGTATATGT+TGG | 0.492054 | tig0033038:-31004 | None:intergenic |
| GACAGGATCACGACTGAAAG+TGG | 0.492188 | tig0033038:-30041 | None:intergenic |
| CGACCATCTCGTCAATGAAC+CGG | 0.492546 | tig0033038:+28712 | Msa1450710:CDS |
| AATCATTGTGCAGCCCGATC+GGG | 0.492725 | tig0033038:+30803 | Msa1450710:CDS |
| CAACACTTACCCACATCCCT+CGG | 0.493031 | tig0033038:-31093 | None:intergenic |
| AGTGTTCTTAATGCTATAGC+TGG | 0.494975 | tig0033038:+28848 | Msa1450710:CDS |
| GCCGTGATGCCATCAGCTAA+AGG | 0.496857 | tig0033038:+30612 | Msa1450710:CDS |
| ACAGCTGTGATTGCTGAGAC+AGG | 0.499666 | tig0033038:+31035 | Msa1450710:CDS |
| AGCTGTGATTGCTGAGACAG+GGG | 0.505266 | tig0033038:+31037 | Msa1450710:CDS |
| GCAGTAAAACCTGTACTAGT+AGG | 0.506078 | tig0033038:+30516 | Msa1450710:CDS |
| ATTGAGGTTGAAATTCATGA+TGG | 0.507826 | tig0033038:+31486 | Msa1450710:CDS |
| AGCATTGGCTGTAACTTGCC+TGG | 0.508186 | tig0033038:+30007 | Msa1450710:CDS |
| AGACGTCGGTGACGCCGACT+TGG | 0.509266 | tig0033038:-28655 | None:intergenic |
| TGCTGTAACGAGCTGAATGC+TGG | 0.511832 | tig0033038:+28752 | Msa1450710:CDS |
| TGTGCAGCCCGATCGGGTTG+TGG | 0.514001 | tig0033038:+30809 | Msa1450710:CDS |
| GGTTCAATTGGATGGTCTGT+TGG | 0.514958 | tig0033038:+31213 | Msa1450710:CDS |
| TTAGCAACCACAACCCGATC+GGG | 0.517431 | tig0033038:-30816 | None:intergenic |
| AAGCCTGTTTATATAAGCAT+TGG | 0.517974 | tig0033038:+29992 | Msa1450710:CDS |
| AAAGGCTGTGGTGAATAACT+TGG | 0.518140 | tig0033038:+29916 | Msa1450710:intron |
| TTATTATATACTAAAAGGGG+GGG | 0.518709 | tig0033038:-28346 | None:intergenic |
| GCTATTGGCAGCAGAGACCC+TGG | 0.518971 | tig0033038:-31809 | None:intergenic |
| AACACTTACCCACATCCCTC+GGG | 0.522066 | tig0033038:-31092 | None:intergenic |
| CATCTGGAACAAATATCCTA+TGG | 0.523884 | tig0033038:-30929 | None:intergenic |
| TTGCTGAGACAGGGGACTCA+TGG | 0.524993 | tig0033038:+31045 | Msa1450710:CDS |
| TTATTGGGGTGCTGTGAGTA+CGG | 0.525149 | tig0033038:+30671 | Msa1450710:CDS |
| GTTGCTTGAGTGGGGCTCCA+GGG | 0.527600 | tig0033038:+31792 | Msa1450710:CDS |
| CCATCAATAAAAGTAAATTC+CGG | 0.529435 | tig0033038:-31937 | None:intergenic |
| GGACTAGTCGGCGTGCGAGA+TGG | 0.529848 | tig0033038:-28634 | None:intergenic |
| TGTTGTTACGTTCACTGTTG+GGG | 0.530989 | tig0033038:+28820 | Msa1450710:CDS |
| GTTTAGTTTGTGGTTTAACG+TGG | 0.531113 | tig0033038:-28392 | None:intergenic |
| TGAAATTACCCGAGGGATGT+GGG | 0.531924 | tig0033038:+31084 | Msa1450710:CDS |
| GAGGTTGAAGTCGCCGGGAA+CGG | 0.536503 | tig0033038:-28681 | None:intergenic |
| CAAGCAAAGAGTTGCTTGAG+TGG | 0.539180 | tig0033038:+31782 | Msa1450710:CDS |
| AGCGTGAGGTTGAAGTCGCC+GGG | 0.539344 | tig0033038:-28686 | None:intergenic |
| TTTCTTTGGTCCTGTTGCTG+TGG | 0.540855 | tig0033038:-31716 | None:intergenic |
| AAGCAAAGAGTTGCTTGAGT+GGG | 0.543213 | tig0033038:+31783 | Msa1450710:CDS |
| ATAGTGATGGAATGGAAAGT+TGG | 0.544516 | tig0033038:-28305 | None:intergenic |
| TATGCTCGGTCACGTGGTGT+CGG | 0.546337 | tig0033038:+28791 | Msa1450710:CDS |
| TTGATGAAAAGTTTAGTTTG+TGG | 0.548420 | tig0033038:-28402 | None:intergenic |
| GTAAGACAGTGGGAGGTACA+TGG | 0.550366 | tig0033038:-28277 | None:intergenic |
| GTGATTGCTTGCATTGGTGA+TGG | 0.552907 | tig0033038:+31276 | Msa1450710:CDS |
| GCGGCCGAGTGTAGCGTCGC+AGG | 0.553256 | tig0033038:-28612 | None:intergenic |
| AGTTGGTAAGAGTAAGACAG+TGG | 0.558764 | tig0033038:-28288 | None:intergenic |
| GCCTCCTGCGACGCTACACT+CGG | 0.559561 | tig0033038:+28608 | Msa1450710:CDS |
| ACTTCTTCTCAAGAAAGAGA+AGG | 0.560019 | tig0033038:+30779 | Msa1450710:CDS |
| TGAAGTTTACTGAGGATTTG+GGG | 0.560721 | tig0033038:-31836 | None:intergenic |
| GAAATGAGATAGTGATGGAA+TGG | 0.565338 | tig0033038:-28313 | None:intergenic |
| TGAAATGGGGATGGTGCTCA+GGG | 0.568384 | tig0033038:-30641 | None:intergenic |
| ATTAGCAACCACAACCCGAT+CGG | 0.569214 | tig0033038:-30817 | None:intergenic |
| GGGACCATCCCTTTAGCTGA+TGG | 0.572399 | tig0033038:-30621 | None:intergenic |
| ATTGAGTAACCACATGGGGT+TGG | 0.573467 | tig0033038:+30455 | Msa1450710:CDS |
| ATCATCTTCCTGATAAACAA+TGG | 0.575164 | tig0033038:+31453 | Msa1450710:CDS |
| CCCTTTAGCTGATGGCATCA+CGG | 0.575591 | tig0033038:-30613 | None:intergenic |
| CTGCTTATGAAAATTACCAT+AGG | 0.576792 | tig0033038:+30913 | Msa1450710:CDS |
| GTTGGTAAGAGTAAGACAGT+GGG | 0.577661 | tig0033038:-28287 | None:intergenic |
| GCTCCGGTTCATTGACGAGA+TGG | 0.581139 | tig0033038:-28715 | None:intergenic |
| TAAAAGTAAATTCCGGACAA+TGG | 0.581428 | tig0033038:-31930 | None:intergenic |
| TGCGTTACAGGTAACTGCAC+AGG | 0.582349 | tig0033038:+31395 | Msa1450710:intron |
| GATGCAATTCACAATGGTGA+AGG | 0.582372 | tig0033038:+31552 | Msa1450710:CDS |
| GACGGTTATGCTCGGTCACG+TGG | 0.584252 | tig0033038:+28785 | Msa1450710:CDS |
| AGACACTGTTACTTAGTCTC+CGG | 0.585070 | tig0033038:+32118 | Msa1450710:three_prime_UTR |
| CAGCTGTGATTGCTGAGACA+GGG | 0.585307 | tig0033038:+31036 | Msa1450710:CDS |
| AAGCGAGTGATTGCTTGCAT+TGG | 0.587132 | tig0033038:+31270 | Msa1450710:CDS |
| TCACGACTGAAAGTGGGATG+AGG | 0.587384 | tig0033038:-30034 | None:intergenic |
| ATCAAGAACTGGAATTACAC+TGG | 0.587582 | tig0033038:+31522 | Msa1450710:CDS |
| ATCTAAAGATCCTAACATTG+TGG | 0.588263 | tig0033038:-28504 | None:intergenic |
| CTAGTCGGCGTGCGAGATGG+CGG | 0.592292 | tig0033038:-28631 | None:intergenic |
| ATGCGGCTGACGGTTATGCT+CGG | 0.592533 | tig0033038:+28777 | Msa1450710:CDS |
| AAAGTGGGATGAGGAATACC+AGG | 0.593405 | tig0033038:-30025 | None:intergenic |
| CAACCGATGAGGTTCAGCTC+CGG | 0.593930 | tig0033038:-28731 | None:intergenic |
| GAACCGGAGCTGAACCTCAT+CGG | 0.594651 | tig0033038:+28728 | Msa1450710:CDS |
| CGAGCTGAATGCTGGTTATG+CGG | 0.602693 | tig0033038:+28760 | Msa1450710:CDS |
| TTGTAGATTGAGTAACCACA+TGG | 0.603932 | tig0033038:+30449 | Msa1450710:intron |
| TCCTCAGTAAACTTCAGAGT+CGG | 0.605135 | tig0033038:+31843 | Msa1450710:exon |
| ACAATGGTGAAGGAAAATGT+TGG | 0.606866 | tig0033038:+31562 | Msa1450710:CDS |
| AGTAGGTGGTCCCAAACTGA+GGG | 0.612881 | tig0033038:+30533 | Msa1450710:CDS |
| AATGCTGGTTATGCGGCTGA+CGG | 0.614053 | tig0033038:+28767 | Msa1450710:CDS |
| CGCATCAGCTAGTTCGACAA+AGG | 0.614351 | tig0033038:-30574 | None:intergenic |
| GAAGTTTACTGAGGATTTGG+GGG | 0.615619 | tig0033038:-31835 | None:intergenic |
| AAGTTCCAATGAAATGGGGA+TGG | 0.619469 | tig0033038:-30650 | None:intergenic |
| AGCGTCGCAGGAGGCGATCG+CGG | 0.619577 | tig0033038:-28600 | None:intergenic |
| AGGAAAATGTTGGACAACCA+AGG | 0.622216 | tig0033038:+31572 | Msa1450710:CDS |
| CAATGGAGGATACACAATTG+AGG | 0.623280 | tig0033038:+31470 | Msa1450710:CDS |
| TAGTAGGTGGTCCCAAACTG+AGG | 0.624646 | tig0033038:+30532 | Msa1450710:CDS |
| AGCAAAGAGTTGCTTGAGTG+GGG | 0.625045 | tig0033038:+31784 | Msa1450710:CDS |
| AGGTGGTCCCAAACTGAGGG+TGG | 0.630619 | tig0033038:+30536 | Msa1450710:CDS |
| GTCGAACTAGCTGATGCGAG+TGG | 0.630980 | tig0033038:+30579 | Msa1450710:CDS |
| TGACGCCGACTTGGACTAGT+CGG | 0.644497 | tig0033038:-28646 | None:intergenic |
| CTGCTGCTTCCAACCCCATG+TGG | 0.646622 | tig0033038:-30464 | None:intergenic |
| GTTGTTACGTTCACTGTTGG+GGG | 0.649005 | tig0033038:+28821 | Msa1450710:CDS |
| AACATGACATTAACTCTCAG+AGG | 0.651302 | tig0033038:-30981 | None:intergenic |
| ACAGGATCACGACTGAAAGT+GGG | 0.654306 | tig0033038:-30040 | None:intergenic |
| GGTAAGAGTAAGACAGTGGG+AGG | 0.655254 | tig0033038:-28284 | None:intergenic |
| AAGCAATCACTCGCTTCTCG+GGG | 0.655548 | tig0033038:-31263 | None:intergenic |
| CCACCAACAATACAAATAAG+CGG | 0.658046 | tig0033038:-28890 | None:intergenic |
| GATGCCATCAGCTAAAGGGA+TGG | 0.659243 | tig0033038:+30617 | Msa1450710:CDS |
| CAATAAGTTCCAATGAAATG+GGG | 0.661557 | tig0033038:-30654 | None:intergenic |
| CTGTATTGAAGAAGATACCA+TGG | 0.662710 | tig0033038:-28244 | None:intergenic |
| GGGGTTGGAAGCAGCAGTTG+AGG | 0.663030 | tig0033038:+30470 | Msa1450710:CDS |
| GTAGATTGAGTAACCACATG+GGG | 0.665962 | tig0033038:+30451 | Msa1450710:intron |
| GGTGGCTGGTTGGATCGAAG+AGG | 0.667849 | tig0033038:-28579 | None:intergenic |
| GTCGCAGGAGGCGATCGCGG+TGG | 0.669288 | tig0033038:-28597 | None:intergenic |
| ATCTTCCTGATAAACAATGG+AGG | 0.670205 | tig0033038:+31456 | Msa1450710:CDS |
| TTGTTACGTTCACTGTTGGG+GGG | 0.670836 | tig0033038:+28822 | Msa1450710:CDS |
| ACCGACTCTGAAGTTTACTG+AGG | 0.674817 | tig0033038:-31844 | None:intergenic |
| GCACGCCGACTAGTCCAAGT+CGG | 0.675934 | tig0033038:+28641 | Msa1450710:CDS |
| GTAAAACCTGTACTAGTAGG+TGG | 0.676238 | tig0033038:+30519 | Msa1450710:CDS |
| TTGATTGATGCAATTCACAA+TGG | 0.677426 | tig0033038:+31546 | Msa1450710:CDS |
| AAATGGGAAGAGACTAAGAG+GGG | 0.678158 | tig0033038:-28369 | None:intergenic |
| TGTAGATTGAGTAACCACAT+GGG | 0.679957 | tig0033038:+30450 | Msa1450710:intron |
| CGAGATGGTCGAGAAGCGTG+AGG | 0.681325 | tig0033038:-28700 | None:intergenic |
| GAAATGGGAAGAGACTAAGA+GGG | 0.684252 | tig0033038:-28370 | None:intergenic |
| GTGTCGACAATGCTGAGGTG+TGG | 0.686606 | tig0033038:+31420 | Msa1450710:CDS |
| GCTCGTTACAGCAACCGATG+AGG | 0.687230 | tig0033038:-28742 | None:intergenic |
| GTTGTGAAATGAGATAGTGA+TGG | 0.693358 | tig0033038:-28318 | None:intergenic |
| AGGATGTGTCGACAATGCTG+AGG | 0.731840 | tig0033038:+31415 | Msa1450710:CDS |
| GCCGGGAACGGAGAAGACGT+CGG | 0.741181 | tig0033038:-28669 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTTTTGTTTTGTTTTT+GGG | + | tig0033038:29036-29055 | Msa1450710:intron | 15.0% |
| !!! | TTTTGTAATTTTCATATATC+CGG | - | tig0033038:32140-32159 | None:intergenic | 15.0% |
| !!! | TTTGATGGATATTTAAAGTA+TGG | - | tig0033038:28443-28462 | None:intergenic | 20.0% |
| !!! | TTTTTGAAGTATAGTTTTGA+TGG | - | tig0033038:28458-28477 | None:intergenic | 20.0% |
| !! | AAAAATGACAAATTTAGCAA+CGG | - | tig0033038:29024-29043 | None:intergenic | 20.0% |
| !!! | GTCATTTTTTGTTTTGTTTT+TGG | + | tig0033038:29035-29054 | Msa1450710:intron | 20.0% |
| !!! | GCAAAAATTACTACAATTTT+AGG | - | tig0033038:29427-29446 | None:intergenic | 20.0% |
| !!! | AAAATTGTAGTAATTTTTGC+TGG | + | tig0033038:29427-29446 | Msa1450710:intron | 20.0% |
| !! | ATACGTTACATATTTGAATT+GGG | + | tig0033038:29706-29725 | Msa1450710:intron | 20.0% |
| !!! | GTTTGATTTGATTTGATAAA+AGG | + | tig0033038:29898-29917 | Msa1450710:intron | 20.0% |
| !!! | TCTCAATTTTTAGAATCAAA+TGG | - | tig0033038:31896-31915 | None:intergenic | 20.0% |
| ! | TTATTATATACTAAAAGGGG+GGG | - | tig0033038:28349-28368 | None:intergenic | 25.0% |
| ! | GTTATTATATACTAAAAGGG+GGG | - | tig0033038:28350-28369 | None:intergenic | 25.0% |
| ! | GGTTATTATATACTAAAAGG+GGG | - | tig0033038:28351-28370 | None:intergenic | 25.0% |
| ! | GGGTTATTATATACTAAAAG+GGG | - | tig0033038:28352-28371 | None:intergenic | 25.0% |
| ! | GGGGTTATTATATACTAAAA+GGG | - | tig0033038:28353-28372 | None:intergenic | 25.0% |
| ! | AGGGGTTATTATATACTAAA+AGG | - | tig0033038:28354-28373 | None:intergenic | 25.0% |
| !!! | TTGATGAAAAGTTTAGTTTG+TGG | - | tig0033038:28405-28424 | None:intergenic | 25.0% |
| ! | TCAAACATGTAGTATATGTT+TGG | - | tig0033038:29348-29367 | None:intergenic | 25.0% |
| ! | CATATACTACATGTTTGAAT+CGG | + | tig0033038:29350-29369 | Msa1450710:intron | 25.0% |
| ! | ATATACTACATGTTTGAATC+GGG | + | tig0033038:29351-29370 | Msa1450710:intron | 25.0% |
| !! | TAACTTTTACAAAATCACAG+TGG | - | tig0033038:29619-29638 | None:intergenic | 25.0% |
| ! | TCAAATATGTAACGTATGTT+TGG | - | tig0033038:29703-29722 | None:intergenic | 25.0% |
| ! | CATACGTTACATATTTGAAT+TGG | + | tig0033038:29705-29724 | Msa1450710:intron | 25.0% |
| ! | TACGTTACATATTTGAATTG+GGG | + | tig0033038:29707-29726 | Msa1450710:intron | 25.0% |
| !! | GCTTAAATTACCATGATTTT+AGG | - | tig0033038:29785-29804 | None:intergenic | 25.0% |
| ! | AAAATCATGGTAATTTAAGC+TGG | + | tig0033038:29785-29804 | Msa1450710:intron | 25.0% |
| ! | AAATAGAGAAAGACTTACTT+GGG | - | tig0033038:30082-30101 | None:intergenic | 25.0% |
| ! | TTCAAATCATACAAAGAATC+TGG | + | tig0033038:30149-30168 | Msa1450710:intron | 25.0% |
| !!! | AGGCTAGTTTTTGTTAAAAT+CGG | + | tig0033038:30300-30319 | Msa1450710:intron | 25.0% |
| ! | TCATCAACATTTCCAATAAT+CGG | - | tig0033038:30402-30421 | None:intergenic | 25.0% |
| ! | TATGAGTTTCAAATGCAATA+TGG | + | tig0033038:31192-31211 | Msa1450710:CDS | 25.0% |
| ! | AAACATAAGCTATCTTTCTT+TGG | - | tig0033038:31733-31752 | None:intergenic | 25.0% |
| ! | CCATCAATAAAAGTAAATTC+CGG | - | tig0033038:31940-31959 | None:intergenic | 25.0% |
| AACAAAATGTCCACAATGTT+AGG | + | tig0033038:28494-28513 | Msa1450710:exon | 30.0% | |
| ATCTAAAGATCCTAACATTG+TGG | - | tig0033038:28507-28526 | None:intergenic | 30.0% | |
| GACCCAATTCTAATGATTAT+GGG | + | tig0033038:28912-28931 | Msa1450710:CDS | 30.0% | |
| GTCCCATAATCATTAGAATT+GGG | - | tig0033038:28917-28936 | None:intergenic | 30.0% | |
| AGTCCCATAATCATTAGAAT+TGG | - | tig0033038:28918-28937 | None:intergenic | 30.0% | |
| AGGATTCTTCATCATACTAT+TGG | + | tig0033038:28941-28960 | Msa1450710:CDS | 30.0% | |
| ! | TAGCTTTTACAAAATCACAG+TGG | - | tig0033038:29245-29264 | None:intergenic | 30.0% |
| !! | TTTTTGCTTTTGCGAAATCA+TGG | + | tig0033038:29278-29297 | Msa1450710:intron | 30.0% |
| CATGTAGTATATGTTTGGAT+TGG | - | tig0033038:29343-29362 | None:intergenic | 30.0% | |
| TATACTACATGTTTGAATCG+GGG | + | tig0033038:29352-29371 | Msa1450710:intron | 30.0% | |
| TACACTTAGCTGTTGTAAAA+TGG | + | tig0033038:29484-29503 | Msa1450710:intron | 30.0% | |
| ACACTTAGCTGTTGTAAAAT+GGG | + | tig0033038:29485-29504 | Msa1450710:intron | 30.0% | |
| CAAAATCATAGTAAGCACTA+TGG | + | tig0033038:29655-29674 | Msa1450710:intron | 30.0% | |
| TAATTTAAGCTGGTACATTG+TGG | + | tig0033038:29795-29814 | Msa1450710:intron | 30.0% | |
| !!! | TTTGGTGATTGTTTTGATTG+TGG | + | tig0033038:29876-29895 | Msa1450710:intron | 30.0% |
| !! | TTTGATTTGATAAAAGGCTG+TGG | + | tig0033038:29904-29923 | Msa1450710:intron | 30.0% |
| AAGCCTGTTTATATAAGCAT+TGG | + | tig0033038:29992-30011 | Msa1450710:CDS | 30.0% | |
| CAAATAGAGAAAGACTTACT+TGG | - | tig0033038:30083-30102 | None:intergenic | 30.0% | |
| AAGTTTGGTAGAATCACAAT+CGG | - | tig0033038:30331-30350 | None:intergenic | 30.0% | |
| TAAGTTAACAAGTGCATTTC+TGG | - | tig0033038:30362-30381 | None:intergenic | 30.0% | |
| TTAACTTATGTGTGAAGAAG+AGG | + | tig0033038:30374-30393 | Msa1450710:intron | 30.0% | |
| CAATAAGTTCCAATGAAATG+GGG | - | tig0033038:30657-30676 | None:intergenic | 30.0% | |
| CCAATAAGTTCCAATGAAAT+GGG | - | tig0033038:30658-30677 | None:intergenic | 30.0% | |
| CCATTTCATTGGAACTTATT+GGG | + | tig0033038:30656-30675 | Msa1450710:CDS | 30.0% | |
| CATTTCATTGGAACTTATTG+GGG | + | tig0033038:30657-30676 | Msa1450710:CDS | 30.0% | |
| GAGCTGTAGTCATTAAAAAT+GGG | - | tig0033038:30747-30766 | None:intergenic | 30.0% | |
| AGAGCTGTAGTCATTAAAAA+TGG | - | tig0033038:30748-30767 | None:intergenic | 30.0% | |
| !! | ATTTGGATGCATTTTGATGA+AGG | + | tig0033038:30848-30867 | Msa1450710:CDS | 30.0% |
| TTTGATGAAGGATTTCCTAA+AGG | + | tig0033038:30860-30879 | Msa1450710:CDS | 30.0% | |
| CTGCTTATGAAAATTACCAT+AGG | + | tig0033038:30913-30932 | Msa1450710:CDS | 30.0% | |
| ACAACATCTGTTGTATATGT+TGG | - | tig0033038:31007-31026 | None:intergenic | 30.0% | |
| TCAAAAATTGAAATTACCCG+AGG | + | tig0033038:31076-31095 | Msa1450710:CDS | 30.0% | |
| CAAAAATTGAAATTACCCGA+GGG | + | tig0033038:31077-31096 | Msa1450710:CDS | 30.0% | |
| CAAATGCAATATGGTTCAAT+TGG | + | tig0033038:31201-31220 | Msa1450710:CDS | 30.0% | |
| ATTGTTTATCAGGAAGATGA+TGG | - | tig0033038:31454-31473 | None:intergenic | 30.0% | |
| ATCATCTTCCTGATAAACAA+TGG | + | tig0033038:31453-31472 | Msa1450710:CDS | 30.0% | |
| ATTGAGGTTGAAATTCATGA+TGG | + | tig0033038:31486-31505 | Msa1450710:CDS | 30.0% | |
| ! | CAGTTCTTGATAACATTGTA+TGG | - | tig0033038:31513-31532 | None:intergenic | 30.0% |
| CATACAATGTTATCAAGAAC+TGG | + | tig0033038:31511-31530 | Msa1450710:CDS | 30.0% | |
| TTGATTGATGCAATTCACAA+TGG | + | tig0033038:31546-31565 | Msa1450710:CDS | 30.0% | |
| ! | CTTGTTATGGAAGAAATTTG+AGG | - | tig0033038:31626-31645 | None:intergenic | 30.0% |
| CAGCACTTATATTCTTGTTA+TGG | - | tig0033038:31639-31658 | None:intergenic | 30.0% | |
| TAAAAGTAAATTCCGGACAA+TGG | - | tig0033038:31933-31952 | None:intergenic | 30.0% | |
| !! | CCGGAATTTACTTTTATTGA+TGG | + | tig0033038:31937-31956 | Msa1450710:three_prime_UTR | 30.0% |
| ATTCAGTCACTTGAGATAAA+TGG | + | tig0033038:32001-32020 | Msa1450710:three_prime_UTR | 30.0% | |
| ! | ATAGTGATGGAATGGAAAGT+TGG | - | tig0033038:28308-28327 | None:intergenic | 35.0% |
| ! | GAAATGAGATAGTGATGGAA+TGG | - | tig0033038:28316-28335 | None:intergenic | 35.0% |
| GTTGTGAAATGAGATAGTGA+TGG | - | tig0033038:28321-28340 | None:intergenic | 35.0% | |
| TTGTGGTTTAACGTGGAAAT+GGG | - | tig0033038:28388-28407 | None:intergenic | 35.0% | |
| TTTGTGGTTTAACGTGGAAA+TGG | - | tig0033038:28389-28408 | None:intergenic | 35.0% | |
| !! | GTTTAGTTTGTGGTTTAACG+TGG | - | tig0033038:28395-28414 | None:intergenic | 35.0% |
| AGTGTTCTTAATGCTATAGC+TGG | + | tig0033038:28848-28867 | Msa1450710:CDS | 35.0% | |
| ! | TTGCCGCTTATTTGTATTGT+TGG | + | tig0033038:28887-28906 | Msa1450710:CDS | 35.0% |
| CCACCAACAATACAAATAAG+CGG | - | tig0033038:28893-28912 | None:intergenic | 35.0% | |
| GGACCCAATTCTAATGATTA+TGG | + | tig0033038:28911-28930 | Msa1450710:CDS | 35.0% | |
| ! | CTAATGATTATGGGACTAGT+AGG | + | tig0033038:28921-28940 | Msa1450710:CDS | 35.0% |
| CACTTAGCTGTTGTAAAATG+GGG | + | tig0033038:29486-29505 | Msa1450710:intron | 35.0% | |
| AAACAAAGTCACTATGCATC+TGG | - | tig0033038:29539-29558 | None:intergenic | 35.0% | |
| AGATGCATAGTGACTTTGTT+TGG | + | tig0033038:29538-29557 | Msa1450710:intron | 35.0% | |
| ! | ACTTTGTTTGGTATCACAGA+CGG | + | tig0033038:29550-29569 | Msa1450710:intron | 35.0% |
| TGCACTTGGTTGTTGTAAAA+TGG | + | tig0033038:29851-29870 | Msa1450710:intron | 35.0% | |
| GCACTTGGTTGTTGTAAAAT+GGG | + | tig0033038:29852-29871 | Msa1450710:intron | 35.0% | |
| !! | GGTTGTTGTAAAATGGGTTT+TGG | + | tig0033038:29858-29877 | Msa1450710:intron | 35.0% |
| CAGCCAATGCTTATATAAAC+AGG | - | tig0033038:29998-30017 | None:intergenic | 35.0% | |
| ! | CATCGTGTTTAAAGCAAGTT+TGG | - | tig0033038:30202-30221 | None:intergenic | 35.0% |
| GTTTGAATTAGCTGCAAGTT+TGG | + | tig0033038:30238-30257 | Msa1450710:intron | 35.0% | |
| TGAGATTGTTGAAGCTTCAA+AGG | + | tig0033038:30280-30299 | Msa1450710:intron | 35.0% | |
| ! | AGTTTTTGTTAAAATCGGCG+TGG | + | tig0033038:30305-30324 | Msa1450710:intron | 35.0% |
| TGTGATTCTACCAAACTTAC+TGG | + | tig0033038:30333-30352 | Msa1450710:intron | 35.0% | |
| TTTCTGGATTCCAGTAAGTT+TGG | - | tig0033038:30346-30365 | None:intergenic | 35.0% | |
| TTGTAGATTGAGTAACCACA+TGG | + | tig0033038:30449-30468 | Msa1450710:intron | 35.0% | |
| TGTAGATTGAGTAACCACAT+GGG | + | tig0033038:30450-30469 | Msa1450710:intron | 35.0% | |
| CCCATTTCATTGGAACTTAT+TGG | + | tig0033038:30655-30674 | Msa1450710:CDS | 35.0% | |
| CCCAATAAGTTCCAATGAAA+TGG | - | tig0033038:30659-30678 | None:intergenic | 35.0% | |
| TTTAATGACTACAGCTCTGT+TGG | + | tig0033038:30750-30769 | Msa1450710:CDS | 35.0% | |
| TTAATGACTACAGCTCTGTT+GGG | + | tig0033038:30751-30770 | Msa1450710:CDS | 35.0% | |
| ACTTCTTCTCAAGAAAGAGA+AGG | + | tig0033038:30779-30798 | Msa1450710:CDS | 35.0% | |
| ATCAAAATGCATCCAAATGC+AGG | - | tig0033038:30846-30865 | None:intergenic | 35.0% | |
| ! | CATCTGGAACAAATATCCTA+TGG | - | tig0033038:30932-30951 | None:intergenic | 35.0% |
| CATAGGATATTTGTTCCAGA+TGG | + | tig0033038:30930-30949 | Msa1450710:CDS | 35.0% | |
| ! | TTAACTCTCAGAGGTTCTTT+TGG | - | tig0033038:30975-30994 | None:intergenic | 35.0% |
| AACATGACATTAACTCTCAG+AGG | - | tig0033038:30984-31003 | None:intergenic | 35.0% | |
| !! | TAGTGCTGATAAAATCTCGT+TGG | + | tig0033038:31165-31184 | Msa1450710:intron | 35.0% |
| TGCAATATGGTTCAATTGGA+TGG | + | tig0033038:31205-31224 | Msa1450710:CDS | 35.0% | |
| CTGTAACGCATTTAAGAGAA+AGG | - | tig0033038:31385-31404 | None:intergenic | 35.0% | |
| CTTTCTCTTAAATGCGTTAC+AGG | + | tig0033038:31383-31402 | Msa1450710:intron | 35.0% | |
| ATCTTCCTGATAAACAATGG+AGG | + | tig0033038:31456-31475 | Msa1450710:CDS | 35.0% | |
| TGTATCCTCCATTGTTTATC+AGG | - | tig0033038:31464-31483 | None:intergenic | 35.0% | |
| ATCAAGAACTGGAATTACAC+TGG | + | tig0033038:31522-31541 | Msa1450710:CDS | 35.0% | |
| ACAATGGTGAAGGAAAATGT+TGG | + | tig0033038:31562-31581 | Msa1450710:CDS | 35.0% | |
| ! | TTCATGCATGCTTCATTTTC+AGG | + | tig0033038:31660-31679 | Msa1450710:intron | 35.0% |
| !!! | TTTTCAGGTATTCTGTGAAG+AGG | + | tig0033038:31675-31694 | Msa1450710:intron | 35.0% |
| TGAAGTTTACTGAGGATTTG+GGG | - | tig0033038:31839-31858 | None:intergenic | 35.0% | |
| CTGAAGTTTACTGAGGATTT+GGG | - | tig0033038:31840-31859 | None:intergenic | 35.0% | |
| ! | TCTGAAGTTTACTGAGGATT+TGG | - | tig0033038:31841-31860 | None:intergenic | 35.0% |
| ! | GTCTATTGTTGTTACATTGC+TGG | + | tig0033038:31865-31884 | Msa1450710:three_prime_UTR | 35.0% |
| ! | CTTTTAGATATGCCATTGTC+CGG | + | tig0033038:31918-31937 | Msa1450710:three_prime_UTR | 35.0% |
| ! | CTAATATACTTTGCTGCTTC+AGG | + | tig0033038:32046-32065 | Msa1450710:three_prime_UTR | 35.0% |
| ! | GTTGGTAAGAGTAAGACAGT+GGG | - | tig0033038:28290-28309 | None:intergenic | 40.0% |
| !! | AGTTGGTAAGAGTAAGACAG+TGG | - | tig0033038:28291-28310 | None:intergenic | 40.0% |
| AAATGGGAAGAGACTAAGAG+GGG | - | tig0033038:28372-28391 | None:intergenic | 40.0% | |
| GAAATGGGAAGAGACTAAGA+GGG | - | tig0033038:28373-28392 | None:intergenic | 40.0% | |
| ! | TGTGTTGTTACGTTCACTGT+TGG | + | tig0033038:28818-28837 | Msa1450710:CDS | 40.0% |
| ! | GTGTTGTTACGTTCACTGTT+GGG | + | tig0033038:28819-28838 | Msa1450710:CDS | 40.0% |
| TGTTGTTACGTTCACTGTTG+GGG | + | tig0033038:28820-28839 | Msa1450710:CDS | 40.0% | |
| CCGCTTATTTGTATTGTTGG+TGG | + | tig0033038:28890-28909 | Msa1450710:CDS | 40.0% | |
| !! | TGGTGTTCCTGATTTTAGTC+AGG | + | tig0033038:28961-28980 | Msa1450710:CDS | 40.0% |
| CTCAACTCCTGACTAAAATC+AGG | - | tig0033038:28971-28990 | None:intergenic | 40.0% | |
| !! | CTGATTTTAGTCAGGAGTTG+AGG | + | tig0033038:28969-28988 | Msa1450710:CDS | 40.0% |
| TAGCGAGTTTGTCAGAATCA+CGG | + | tig0033038:29144-29163 | Msa1450710:intron | 40.0% | |
| CAGTGAGTTTGACGAAATCA+TGG | - | tig0033038:29320-29339 | None:intergenic | 40.0% | |
| CAGCTAAGTGTATGCATGTT+TGG | - | tig0033038:29476-29495 | None:intergenic | 40.0% | |
| TGTACGCTGTCCTAAAATCA+TGG | + | tig0033038:29772-29791 | Msa1450710:intron | 40.0% | |
| AAAGGCTGTGGTGAATAACT+TGG | + | tig0033038:29916-29935 | Msa1450710:intron | 40.0% | |
| AATTACTGGAAAGTGGGATG+AGG | - | tig0033038:30108-30127 | None:intergenic | 40.0% | |
| CACGCTAATTACTGGAAAGT+GGG | - | tig0033038:30114-30133 | None:intergenic | 40.0% | |
| ACACGCTAATTACTGGAAAG+TGG | - | tig0033038:30115-30134 | None:intergenic | 40.0% | |
| ATCGAAGACACGCTAATTAC+TGG | - | tig0033038:30122-30141 | None:intergenic | 40.0% | |
| TGAATTAGCTGCAAGTTTGG+TGG | + | tig0033038:30241-30260 | Msa1450710:intron | 40.0% | |
| GAAGAAGAGGAACCGATTAT+TGG | + | tig0033038:30387-30406 | Msa1450710:intron | 40.0% | |
| GTAGATTGAGTAACCACATG+GGG | + | tig0033038:30451-30470 | Msa1450710:intron | 40.0% | |
| GCAGTAAAACCTGTACTAGT+AGG | + | tig0033038:30516-30535 | Msa1450710:CDS | 40.0% | |
| GTAAAACCTGTACTAGTAGG+TGG | + | tig0033038:30519-30538 | Msa1450710:CDS | 40.0% | |
| AAGTTCCAATGAAATGGGGA+TGG | - | tig0033038:30653-30672 | None:intergenic | 40.0% | |
| ! | GACTTCAAAGGTTTTCCATC+TGG | - | tig0033038:30948-30967 | None:intergenic | 40.0% |
| !! | TCTTTTGGTGCAGACTTCAA+AGG | - | tig0033038:30960-30979 | None:intergenic | 40.0% |
| CAATGGAGGATACACAATTG+AGG | + | tig0033038:31470-31489 | Msa1450710:CDS | 40.0% | |
| GATGCAATTCACAATGGTGA+AGG | + | tig0033038:31552-31571 | Msa1450710:CDS | 40.0% | |
| AGGAAAATGTTGGACAACCA+AGG | + | tig0033038:31572-31591 | Msa1450710:CDS | 40.0% | |
| AAGCAAAGAGTTGCTTGAGT+GGG | + | tig0033038:31783-31802 | Msa1450710:CDS | 40.0% | |
| GAAGTTTACTGAGGATTTGG+GGG | - | tig0033038:31838-31857 | None:intergenic | 40.0% | |
| TCCTCAGTAAACTTCAGAGT+CGG | + | tig0033038:31843-31862 | Msa1450710:exon | 40.0% | |
| CGGACAATGGCATATCTAAA+AGG | - | tig0033038:31920-31939 | None:intergenic | 40.0% | |
| ! | AGACACTGTTACTTAGTCTC+CGG | + | tig0033038:32118-32137 | Msa1450710:three_prime_UTR | 40.0% |
| GGAAATGGGAAGAGACTAAG+AGG | - | tig0033038:28374-28393 | None:intergenic | 45.0% | |
| CATGAAACGACGTCGTTGTT+TGG | - | tig0033038:28542-28561 | None:intergenic | 45.0% | |
| GTTGTTACGTTCACTGTTGG+GGG | + | tig0033038:28821-28840 | Msa1450710:CDS | 45.0% | |
| TTGTTACGTTCACTGTTGGG+GGG | + | tig0033038:28822-28841 | Msa1450710:CDS | 45.0% | |
| TCAGACTGTTACGTGCTTTC+AGG | + | tig0033038:28997-29016 | Msa1450710:CDS | 45.0% | |
| GTATGCATGTTTGGACCACT+GGG | - | tig0033038:29467-29486 | None:intergenic | 45.0% | |
| TGTATGCATGTTTGGACCAC+TGG | - | tig0033038:29468-29487 | None:intergenic | 45.0% | |
| TGTTTGGTATCACAGACGGT+TGG | + | tig0033038:29554-29573 | Msa1450710:intron | 45.0% | |
| ! | GACGGTTGGTCAGATTATAG+TGG | + | tig0033038:29568-29587 | Msa1450710:intron | 45.0% |
| GATCCAAACATGCATGCACT+TGG | + | tig0033038:29837-29856 | Msa1450710:intron | 45.0% | |
| CAACCAAGTGCATGCATGTT+TGG | - | tig0033038:29843-29862 | None:intergenic | 45.0% | |
| AAAGTGGGATGAGGAATACC+AGG | - | tig0033038:30028-30047 | None:intergenic | 45.0% | |
| ACAGGATCACGACTGAAAGT+GGG | - | tig0033038:30043-30062 | None:intergenic | 45.0% | |
| ACTTGGGAGCGAGTGAAAAA+GGG | - | tig0033038:30066-30085 | None:intergenic | 45.0% | |
| TACTTGGGAGCGAGTGAAAA+AGG | - | tig0033038:30067-30086 | None:intergenic | 45.0% | |
| ! | CTGCAAGTTTGGTGGAATCA+TGG | + | tig0033038:30249-30268 | Msa1450710:intron | 45.0% |
| ! | CAAGTTTGGTGGAATCATGG+TGG | + | tig0033038:30252-30271 | Msa1450710:intron | 45.0% |
| ATTGAGTAACCACATGGGGT+TGG | + | tig0033038:30455-30474 | Msa1450710:CDS | 45.0% | |
| !! | TTATTGGGGTGCTGTGAGTA+CGG | + | tig0033038:30671-30690 | Msa1450710:CDS | 45.0% |
| GCTGATGCATACTTGTTTGC+TGG | + | tig0033038:30720-30739 | Msa1450710:CDS | 45.0% | |
| ATTAGCAACCACAACCCGAT+CGG | - | tig0033038:30820-30839 | None:intergenic | 45.0% | |
| ! | GTTGCTAATGGACCTGCATT+TGG | + | tig0033038:30831-30850 | Msa1450710:CDS | 45.0% |
| TTGAAATTACCCGAGGGATG+TGG | + | tig0033038:31083-31102 | Msa1450710:CDS | 45.0% | |
| TGAAATTACCCGAGGGATGT+GGG | + | tig0033038:31084-31103 | Msa1450710:CDS | 45.0% | |
| GCTGATAAAATCTCGTTGGC+AGG | + | tig0033038:31169-31188 | Msa1450710:intron | 45.0% | |
| GGTTCAATTGGATGGTCTGT+TGG | + | tig0033038:31213-31232 | Msa1450710:CDS | 45.0% | |
| AAGCGAGTGATTGCTTGCAT+TGG | + | tig0033038:31270-31289 | Msa1450710:CDS | 45.0% | |
| ! | GTGATTGCTTGCATTGGTGA+TGG | + | tig0033038:31276-31295 | Msa1450710:CDS | 45.0% |
| !! | CATTGGTGATGGAAGCTTTC+AGG | + | tig0033038:31287-31306 | Msa1450710:CDS | 45.0% |
| CAATGTCAAGTGACTCACCT+TGG | - | tig0033038:31592-31611 | None:intergenic | 45.0% | |
| TTTCTTTGGTCCTGTTGCTG+TGG | - | tig0033038:31719-31738 | None:intergenic | 45.0% | |
| CAAGCAAAGAGTTGCTTGAG+TGG | + | tig0033038:31782-31801 | Msa1450710:CDS | 45.0% | |
| AGCAAAGAGTTGCTTGAGTG+GGG | + | tig0033038:31784-31803 | Msa1450710:CDS | 45.0% | |
| TTTACTGAGGATTTGGGGGA+CGG | - | tig0033038:31834-31853 | None:intergenic | 45.0% | |
| !! | ACCGACTCTGAAGTTTACTG+AGG | - | tig0033038:31847-31866 | None:intergenic | 45.0% |
| ! | GTAAGACAGTGGGAGGTACA+TGG | - | tig0033038:28280-28299 | None:intergenic | 50.0% |
| GGTAAGAGTAAGACAGTGGG+AGG | - | tig0033038:28287-28306 | None:intergenic | 50.0% | |
| CGACCATCTCGTCAATGAAC+CGG | + | tig0033038:28712-28731 | Msa1450710:CDS | 50.0% | |
| TGCTGTAACGAGCTGAATGC+TGG | + | tig0033038:28752-28771 | Msa1450710:CDS | 50.0% | |
| ! | CGAGCTGAATGCTGGTTATG+CGG | + | tig0033038:28760-28779 | Msa1450710:CDS | 50.0% |
| ! | AATGCTGGTTATGCGGCTGA+CGG | + | tig0033038:28767-28786 | Msa1450710:CDS | 50.0% |
| GTACACTGTCAAACTCCCAG+TGG | + | tig0033038:29449-29468 | Msa1450710:intron | 50.0% | |
| !! | AGCATTGGCTGTAACTTGCC+TGG | + | tig0033038:30007-30026 | Msa1450710:CDS | 50.0% |
| TCACGACTGAAAGTGGGATG+AGG | - | tig0033038:30037-30056 | None:intergenic | 50.0% | |
| GACAGGATCACGACTGAAAG+TGG | - | tig0033038:30044-30063 | None:intergenic | 50.0% | |
| TTGGGACCACCTACTAGTAC+AGG | - | tig0033038:30528-30547 | None:intergenic | 50.0% | |
| TAGTAGGTGGTCCCAAACTG+AGG | + | tig0033038:30532-30551 | Msa1450710:CDS | 50.0% | |
| AGTAGGTGGTCCCAAACTGA+GGG | + | tig0033038:30533-30552 | Msa1450710:CDS | 50.0% | |
| ! | GCTTTTGCCACCCTCAGTTT+GGG | - | tig0033038:30546-30565 | None:intergenic | 50.0% |
| ! | TGCTTTTGCCACCCTCAGTT+TGG | - | tig0033038:30547-30566 | None:intergenic | 50.0% |
| CGCATCAGCTAGTTCGACAA+AGG | - | tig0033038:30577-30596 | None:intergenic | 50.0% | |
| CCCTTTAGCTGATGGCATCA+CGG | - | tig0033038:30616-30635 | None:intergenic | 50.0% | |
| CCGTGATGCCATCAGCTAAA+GGG | + | tig0033038:30613-30632 | Msa1450710:CDS | 50.0% | |
| GATGCCATCAGCTAAAGGGA+TGG | + | tig0033038:30617-30636 | Msa1450710:CDS | 50.0% | |
| TGAAATGGGGATGGTGCTCA+GGG | - | tig0033038:30644-30663 | None:intergenic | 50.0% | |
| ATGAAATGGGGATGGTGCTC+AGG | - | tig0033038:30645-30664 | None:intergenic | 50.0% | |
| GAGCACCATCCCCATTTCAT+TGG | + | tig0033038:30645-30664 | Msa1450710:CDS | 50.0% | |
| CAATCATTGTGCAGCCCGAT+CGG | + | tig0033038:30802-30821 | Msa1450710:CDS | 50.0% | |
| AATCATTGTGCAGCCCGATC+GGG | + | tig0033038:30803-30822 | Msa1450710:CDS | 50.0% | |
| TTAGCAACCACAACCCGATC+GGG | - | tig0033038:30819-30838 | None:intergenic | 50.0% | |
| ! | GATCGGGTTGTGGTTGCTAA+TGG | + | tig0033038:30819-30838 | Msa1450710:CDS | 50.0% |
| !! | GACGCTTCGAAAGTGCCTTT+AGG | - | tig0033038:30878-30897 | None:intergenic | 50.0% |
| ACAGCTGTGATTGCTGAGAC+AGG | + | tig0033038:31035-31054 | Msa1450710:CDS | 50.0% | |
| CAGCTGTGATTGCTGAGACA+GGG | + | tig0033038:31036-31055 | Msa1450710:CDS | 50.0% | |
| AGCTGTGATTGCTGAGACAG+GGG | + | tig0033038:31037-31056 | Msa1450710:CDS | 50.0% | |
| AACACTTACCCACATCCCTC+GGG | - | tig0033038:31095-31114 | None:intergenic | 50.0% | |
| CAACACTTACCCACATCCCT+CGG | - | tig0033038:31096-31115 | None:intergenic | 50.0% | |
| TGGTCTGTTGGTGCAACTCT+TGG | + | tig0033038:31225-31244 | Msa1450710:CDS | 50.0% | |
| AAGCAATCACTCGCTTCTCG+GGG | - | tig0033038:31266-31285 | None:intergenic | 50.0% | |
| CAAGCAATCACTCGCTTCTC+GGG | - | tig0033038:31267-31286 | None:intergenic | 50.0% | |
| GCAAGCAATCACTCGCTTCT+CGG | - | tig0033038:31268-31287 | None:intergenic | 50.0% | |
| TGCGTTACAGGTAACTGCAC+AGG | + | tig0033038:31395-31414 | Msa1450710:intron | 50.0% | |
| ! | AGGATGTGTCGACAATGCTG+AGG | + | tig0033038:31415-31434 | Msa1450710:CDS | 50.0% |
| GAAGCAATTGCCACAGCAAC+AGG | + | tig0033038:31706-31725 | Msa1450710:CDS | 50.0% | |
| !! | TGACGCCGACTTGGACTAGT+CGG | - | tig0033038:28649-28668 | None:intergenic | 55.0% |
| AAGCGTGAGGTTGAAGTCGC+CGG | - | tig0033038:28690-28709 | None:intergenic | 55.0% | |
| GCTCCGGTTCATTGACGAGA+TGG | - | tig0033038:28718-28737 | None:intergenic | 55.0% | |
| GAACCGGAGCTGAACCTCAT+CGG | + | tig0033038:28728-28747 | Msa1450710:CDS | 55.0% | |
| CAACCGATGAGGTTCAGCTC+CGG | - | tig0033038:28734-28753 | None:intergenic | 55.0% | |
| GCTCGTTACAGCAACCGATG+AGG | - | tig0033038:28745-28764 | None:intergenic | 55.0% | |
| ATGCGGCTGACGGTTATGCT+CGG | + | tig0033038:28777-28796 | Msa1450710:CDS | 55.0% | |
| TATGCTCGGTCACGTGGTGT+CGG | + | tig0033038:28791-28810 | Msa1450710:CDS | 55.0% | |
| GGAGCGAGTGAAAAAGGGAC+AGG | - | tig0033038:30061-30080 | None:intergenic | 55.0% | |
| GTCGAACTAGCTGATGCGAG+TGG | + | tig0033038:30579-30598 | Msa1450710:CDS | 55.0% | |
| GCCGTGATGCCATCAGCTAA+AGG | + | tig0033038:30612-30631 | Msa1450710:CDS | 55.0% | |
| GGGACCATCCCTTTAGCTGA+TGG | - | tig0033038:30624-30643 | None:intergenic | 55.0% | |
| TTGCTGAGACAGGGGACTCA+TGG | + | tig0033038:31045-31064 | Msa1450710:CDS | 55.0% | |
| ! | GTGTCGACAATGCTGAGGTG+TGG | + | tig0033038:31420-31439 | Msa1450710:CDS | 55.0% |
| AGGATTTGGGGGACGGCTAT+TGG | - | tig0033038:31827-31846 | None:intergenic | 55.0% | |
| ! | GGTGGCTGGTTGGATCGAAG+AGG | - | tig0033038:28582-28601 | None:intergenic | 60.0% |
| ! | GCACGCCGACTAGTCCAAGT+CGG | + | tig0033038:28641-28660 | Msa1450710:CDS | 60.0% |
| ACCGACGTCTTCTCCGTTCC+CGG | + | tig0033038:28668-28687 | Msa1450710:CDS | 60.0% | |
| GAGGTTGAAGTCGCCGGGAA+CGG | - | tig0033038:28684-28703 | None:intergenic | 60.0% | |
| AGCGTGAGGTTGAAGTCGCC+GGG | - | tig0033038:28689-28708 | None:intergenic | 60.0% | |
| ! | CGAGATGGTCGAGAAGCGTG+AGG | - | tig0033038:28703-28722 | None:intergenic | 60.0% |
| GACGGTTATGCTCGGTCACG+TGG | + | tig0033038:28785-28804 | Msa1450710:CDS | 60.0% | |
| ! | CTGCTGCTTCCAACCCCATG+TGG | - | tig0033038:30467-30486 | None:intergenic | 60.0% |
| GGGGTTGGAAGCAGCAGTTG+AGG | + | tig0033038:30470-30489 | Msa1450710:CDS | 60.0% | |
| AGGTGGTCCCAAACTGAGGG+TGG | + | tig0033038:30536-30555 | Msa1450710:CDS | 60.0% | |
| AGTTGCTTGAGTGGGGCTCC+AGG | + | tig0033038:31791-31810 | Msa1450710:CDS | 60.0% | |
| GTTGCTTGAGTGGGGCTCCA+GGG | + | tig0033038:31792-31811 | Msa1450710:CDS | 60.0% | |
| GCTATTGGCAGCAGAGACCC+TGG | - | tig0033038:31812-31831 | None:intergenic | 60.0% | |
| GCCTCCTGCGACGCTACACT+CGG | + | tig0033038:28608-28627 | Msa1450710:CDS | 65.0% | |
| CTAGTCGGCGTGCGAGATGG+CGG | - | tig0033038:28634-28653 | None:intergenic | 65.0% | |
| !! | GGACTAGTCGGCGTGCGAGA+TGG | - | tig0033038:28637-28656 | None:intergenic | 65.0% |
| ! | AGACGTCGGTGACGCCGACT+TGG | - | tig0033038:28658-28677 | None:intergenic | 65.0% |
| GCCGGGAACGGAGAAGACGT+CGG | - | tig0033038:28672-28691 | None:intergenic | 65.0% | |
| ! | TGTGCAGCCCGATCGGGTTG+TGG | + | tig0033038:30809-30828 | Msa1450710:CDS | 65.0% |
| AGGCGATCGCGGTGGCTGGT+TGG | - | tig0033038:28592-28611 | None:intergenic | 70.0% | |
| AGCGTCGCAGGAGGCGATCG+CGG | - | tig0033038:28603-28622 | None:intergenic | 70.0% | |
| GCCGAGTGTAGCGTCGCAGG+AGG | - | tig0033038:28612-28631 | None:intergenic | 70.0% | |
| CAGGAGGCGATCGCGGTGGC+TGG | - | tig0033038:28596-28615 | None:intergenic | 75.0% | |
| GTCGCAGGAGGCGATCGCGG+TGG | - | tig0033038:28600-28619 | None:intergenic | 75.0% | |
| GCGGCCGAGTGTAGCGTCGC+AGG | - | tig0033038:28615-28634 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0033038 | gene | 28247 | 32168 | 28247 | ID=Msa1450710;Name=Msa1450710 |
| tig0033038 | mRNA | 28247 | 32168 | 28247 | ID=Msa1450710-mRNA-1;Parent=Msa1450710;Name=Msa1450710-mRNA-1;_AED=0.06;_eAED=0.06;_QI=253|1|1|1|1|1|6|316|603 |
| tig0033038 | exon | 28247 | 29018 | 28247 | ID=Msa1450710-mRNA-1:exon:17601;Parent=Msa1450710-mRNA-1 |
| tig0033038 | exon | 29920 | 30083 | 29920 | ID=Msa1450710-mRNA-1:exon:17602;Parent=Msa1450710-mRNA-1 |
| tig0033038 | exon | 30455 | 31105 | 30455 | ID=Msa1450710-mRNA-1:exon:17603;Parent=Msa1450710-mRNA-1 |
| tig0033038 | exon | 31191 | 31308 | 31191 | ID=Msa1450710-mRNA-1:exon:17604;Parent=Msa1450710-mRNA-1 |
| tig0033038 | exon | 31405 | 31593 | 31405 | ID=Msa1450710-mRNA-1:exon:17605;Parent=Msa1450710-mRNA-1 |
| tig0033038 | exon | 31682 | 32168 | 31682 | ID=Msa1450710-mRNA-1:exon:17606;Parent=Msa1450710-mRNA-1 |
| tig0033038 | five_prime_UTR | 28247 | 28499 | 28247 | ID=Msa1450710-mRNA-1:five_prime_utr;Parent=Msa1450710-mRNA-1 |
| tig0033038 | CDS | 28500 | 29018 | 28500 | ID=Msa1450710-mRNA-1:cds;Parent=Msa1450710-mRNA-1 |
| tig0033038 | CDS | 29920 | 30083 | 29920 | ID=Msa1450710-mRNA-1:cds;Parent=Msa1450710-mRNA-1 |
| tig0033038 | CDS | 30455 | 31105 | 30455 | ID=Msa1450710-mRNA-1:cds;Parent=Msa1450710-mRNA-1 |
| tig0033038 | CDS | 31191 | 31308 | 31191 | ID=Msa1450710-mRNA-1:cds;Parent=Msa1450710-mRNA-1 |
| tig0033038 | CDS | 31405 | 31593 | 31405 | ID=Msa1450710-mRNA-1:cds;Parent=Msa1450710-mRNA-1 |
| tig0033038 | CDS | 31682 | 31852 | 31682 | ID=Msa1450710-mRNA-1:cds;Parent=Msa1450710-mRNA-1 |
| tig0033038 | three_prime_UTR | 31853 | 32168 | 31853 | ID=Msa1450710-mRNA-1:three_prime_utr;Parent=Msa1450710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
