AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1335500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1335500 MtrunA17_Chr5g0404551 90.948 232 2 1 1 232 1 213 3.95e-153 424
Msa1335500 MtrunA17_Chr8g0372981 70.204 245 41 3 1 232 1 226 9.56e-122 345
Msa1335500 MtrunA17_Chr8g0345781 70.000 230 50 1 3 232 7 217 5.52e-120 340
Msa1335500 MtrunA17_Chr1g0182331 75.000 216 35 1 17 232 20 216 7.01e-120 340
Msa1335500 MtrunA17_Chr1g0200691 61.694 248 37 2 11 219 57 285 3.58e-103 300
Msa1335500 MtrunA17_Chr7g0276441 71.739 184 33 1 49 232 29 193 2.17e-93 272
Msa1335500 MtrunA17_Chr1g0210921 75.000 40 10 0 132 171 12 51 1.67e-15 70.5
Msa1335500 MtrunA17_Chr2g0280151 32.298 161 82 6 36 172 82 239 5.39e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1335500 AT1G01050.1 75.463 216 34 1 17 232 16 212 9.00e-122 345
Msa1335500 AT1G01050.2 75.463 216 34 1 17 232 16 212 9.00e-122 345
Msa1335500 AT3G53620.1 75.463 216 34 1 17 232 20 216 4.21e-121 343
Msa1335500 AT2G46860.1 75.463 216 34 1 17 232 20 216 2.68e-119 338
Msa1335500 AT2G18230.1 74.766 214 35 1 19 232 24 218 7.93e-117 332
Msa1335500 AT4G01480.1 72.222 216 41 1 17 232 20 216 4.50e-115 328
Msa1335500 AT4G01480.2 72.222 216 41 1 17 232 20 216 4.50e-115 328
Msa1335500 AT5G09650.1 32.704 159 84 5 36 172 92 249 1.85e-14 71.6

Find 81 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTATTTGCATTTAGTTTA+TGG 0.065115 tig0000478:-1863 Msa1335500:CDS
CCATGGCAGGTGATTGAAAT+TGG 0.190283 tig0000478:-3395 Msa1335500:intron
GAAATATACGACCGAATATT+TGG 0.221040 tig0000478:-5413 Msa1335500:five_prime_UTR
TTCCTCCGTGCTCGTGCTAT+TGG 0.259844 tig0000478:-2550 Msa1335500:CDS
TCTGTATAATGGCGGAATTC+AGG 0.260442 tig0000478:+1948 Msa1335500:intergenic
CACTTGTGCTGCCCTGTATC+TGG 0.271681 tig0000478:-1087 Msa1335500:three_prime_UTR
CTTACATAGTTGAGAGCTTA+AGG 0.321086 tig0000478:-1224 Msa1335500:CDS
AAATATTCGGTCGTATATTT+CGG 0.327462 tig0000478:+5415 Msa1335500:intergenic
CAGTGATCCTATGGATGTTC+TGG 0.337131 tig0000478:-2710 Msa1335500:CDS
CTTGCGCTTGTGCCAGATAC+AGG 0.358277 tig0000478:+1075 Msa1335500:intergenic
CAAGACAAGTGGACTTATAA+AGG 0.377557 tig0000478:-3342 Msa1335500:intron
AGTATTCTTTCATTGAGCTT+AGG 0.377855 tig0000478:+4268 Msa1335500:intergenic
GTATTCTTTCATTGAGCTTA+GGG 0.385169 tig0000478:+4269 Msa1335500:intergenic
GCTCTTTGATGTCTGTATAA+TGG 0.387260 tig0000478:+1937 Msa1335500:intergenic
ATAAACTAAATGCAAATAAC+AGG 0.398925 tig0000478:+1865 Msa1335500:intergenic
GAGAGTAGTGAGTCAGAGTT+TGG 0.402829 tig0000478:+5267 Msa1335500:intergenic
TGAAATTGGCAAAGGAAGTA+AGG 0.411821 tig0000478:-3381 Msa1335500:CDS
GTAGGTATTGTTTGCGAAGT+TGG 0.417270 tig0000478:-4340 Msa1335500:intron
CTGTATAATGGCGGAATTCA+GGG 0.428586 tig0000478:+1949 Msa1335500:intergenic
AATTTAGAGATCATTGCAAT+TGG 0.430450 tig0000478:+1175 Msa1335500:intergenic
CCTTGGCATGATGTAGAGAT+AGG 0.436662 tig0000478:-4211 Msa1335500:intron
TTGAAAACTGATGGAGCTCC+TGG 0.438536 tig0000478:+3684 Msa1335500:intergenic
TGAAATAAGAAGATTCTTTG+AGG 0.445984 tig0000478:-1895 Msa1335500:CDS
GGATGTTCTGGTTCTGATGC+AGG 0.447786 tig0000478:-2698 Msa1335500:intron
CTCATTCTTCTTGTCTAGTG+TGG 0.449563 tig0000478:+1476 Msa1335500:intergenic
AGCTCACATGGAATACTTGA+TGG 0.458073 tig0000478:+1401 Msa1335500:intergenic
TTTGATCGGACGGTTGTGAA+TGG 0.463827 tig0000478:+5376 Msa1335500:intergenic
TGTGAGGTATACCAAATATT+CGG 0.466885 tig0000478:+5402 Msa1335500:intergenic
AGGATCACTGTCTTCACAAA+TGG 0.475465 tig0000478:+2723 Msa1335500:intergenic
AGGAAGGTGCCGGGTAGCAC+AGG 0.496025 tig0000478:+2568 Msa1335500:intergenic
GAACTGTTGCTGCTCACCCT+TGG 0.496264 tig0000478:-4228 Msa1335500:CDS
TATTGTTTGCGAAGTTGGTA+TGG 0.496836 tig0000478:-4335 Msa1335500:exon
ACGAGCACGGAGGAAGGTGC+CGG 0.501988 tig0000478:+2558 Msa1335500:intergenic
TGATCGTATTCTTTACTCAT+CGG 0.503153 tig0000478:-2782 Msa1335500:CDS
GACACGGTCTCAGTGATGTT+AGG 0.514961 tig0000478:+5437 Msa1335500:intergenic
TTGTGAAGACAGTGATCCTA+TGG 0.514972 tig0000478:-2719 Msa1335500:CDS
TTCCAAGTACATTTGTTACA+AGG 0.515365 tig0000478:+1838 Msa1335500:intergenic
CTTACACAGTTGAAAACTGA+TGG 0.520205 tig0000478:+3675 Msa1335500:intergenic
AGAGTTTGGCGATGGCGACT+AGG 0.529256 tig0000478:+5281 Msa1335500:intergenic
AAGTAAGGTTAAGTATGAGC+TGG 0.529577 tig0000478:-3366 Msa1335500:CDS
ATCATGACGGATCAAATGAA+TGG 0.532018 tig0000478:-4309 Msa1335500:CDS
GCATCAACGGCAGACTCAGC+TGG 0.536658 tig0000478:+1423 None:intergenic
TTTGTAGTGGAAGGAAGTAT+AGG 0.537651 tig0000478:-5472 None:intergenic
CTGTCTTCACAAATGGTTCG+TGG 0.541096 tig0000478:+2730 Msa1335500:intergenic
GGAATACTTGATGGCATCAA+CGG 0.543163 tig0000478:+1410 Msa1335500:intergenic
GAGTTTGGCGATGGCGACTA+GGG 0.547374 tig0000478:+5282 Msa1335500:intergenic
GGGATAAAACCGTAGTTGTG+TGG 0.550580 tig0000478:+2751 Msa1335500:intergenic
CGAGCACGGAGGAAGGTGCC+GGG 0.550719 tig0000478:+2559 Msa1335500:intergenic
CCTATCTCTACATCATGCCA+AGG 0.552129 tig0000478:+4211 Msa1335500:intergenic
GAGCAGGAGCCTGTGCTACC+CGG 0.553776 tig0000478:-2577 Msa1335500:intron
GCAGCACAAGTGCCATAAAA+CGG 0.556319 tig0000478:+1098 Msa1335500:intergenic
AGAGCTTCCTCCACATCGGT+TGG 0.560428 tig0000478:-1919 Msa1335500:CDS
ACTTCTACCTGGTCAATCAT+CGG 0.565683 tig0000478:+2520 Msa1335500:intergenic
GTTGTCTACCCACACAACTA+CGG 0.573385 tig0000478:-2760 Msa1335500:CDS
AATTGTGGTGCAGGGTGAGA+GGG 0.573996 tig0000478:-2003 Msa1335500:intron
AATAGCACGAGCACGGAGGA+AGG 0.581178 tig0000478:+2552 Msa1335500:intergenic
GGATAAAACCGTAGTTGTGT+GGG 0.585743 tig0000478:+2752 Msa1335500:intergenic
GAATACTCTCTTCAATGTCA+CGG 0.588678 tig0000478:-4252 Msa1335500:CDS
TGTCTTCACAAATGGTTCGT+GGG 0.601852 tig0000478:+2731 Msa1335500:intergenic
ATTTCAGCCAACCGATGTGG+AGG 0.601981 tig0000478:+1912 Msa1335500:intergenic
CTTATTTCAGCCAACCGATG+TGG 0.603146 tig0000478:+1909 Msa1335500:intergenic
TTGCGCTTGTGCCAGATACA+GGG 0.605822 tig0000478:+1076 Msa1335500:intergenic
ACTAATGCCGATGATTGACC+AGG 0.611236 tig0000478:-2527 Msa1335500:intron
GAATTGTGGTGCAGGGTGAG+AGG 0.616336 tig0000478:-2004 Msa1335500:intron
AAAGAAATGACTTACAGAGT+GGG 0.629081 tig0000478:+5239 Msa1335500:intergenic
CGACTAGGGAAGAAGAAACA+AGG 0.631722 tig0000478:+5296 Msa1335500:intergenic
AGTGAGTCAGAGTTTGGCGA+TGG 0.633715 tig0000478:+5273 Msa1335500:intergenic
TTAGTCCAATAGCACGAGCA+CGG 0.634148 tig0000478:+2545 Msa1335500:intergenic
CAACTATGTAAGAAGCATAG+AGG 0.643329 tig0000478:+1235 Msa1335500:intergenic
TATGAGCTGGACAAGACAAG+TGG 0.645481 tig0000478:-3353 Msa1335500:CDS
GTTGGTATGGCTAATCATGA+CGG 0.647306 tig0000478:-4322 Msa1335500:exon
TCAAAGAGCTTCCTCCACAT+CGG 0.652320 tig0000478:-1923 Msa1335500:CDS
CTTTGATGTCTGTATAATGG+CGG 0.654127 tig0000478:+1940 Msa1335500:intergenic
ATCAGAACCAGAACATCCAT+AGG 0.655108 tig0000478:+2703 Msa1335500:intergenic
CAGGTGATTGAAATTGGCAA+AGG 0.656011 tig0000478:-3389 Msa1335500:CDS
CTATCTCTACATCATGCCAA+GGG 0.666160 tig0000478:+4212 Msa1335490:intergenic
ACAAGGACTTAGATCAGCGG+CGG 0.687970 tig0000478:+5313 Msa1335490:intergenic
GAAACAAGGACTTAGATCAG+CGG 0.723420 tig0000478:+5310 Msa1335490:intergenic
TCGGTCGTATATTTCGGACA+CGG 0.733079 tig0000478:+5421 Msa1335490:intergenic
CGGTTGTGAATGGAGATGTG+AGG 0.754829 tig0000478:+5386 Msa1335490:intergenic
GTCCAATAGCACGAGCACGG+AGG 0.771614 tig0000478:+2548 Msa1335490:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAAATTTAAAAACTATTTT+TGG - tig0000478:1271-1290 Msa1335500:intron 10.0%
!! ATTAATAAATTTGACATAAA+CGG + tig0000478:1421-1440 Msa1335500:intergenic 10.0%
!!! AATTATTTTTTTGATAAACA+CGG + tig0000478:1672-1691 Msa1335500:intergenic 10.0%
!!! ATAATTTTTTTTTTAAATGC+AGG - tig0000478:2712-2731 Msa1335500:CDS 10.0%
!!! TAATTTTTTTTTTAAATGCA+GGG - tig0000478:2713-2732 Msa1335500:CDS 10.0%
!!! TTTTAATTCAGTTAAAATTT+TGG + tig0000478:3803-3822 Msa1335500:intergenic 10.0%
!!! ATTTTAACTGAATTAAAAAT+TGG - tig0000478:3805-3824 Msa1335500:intron 10.0%
!! AAATAATTAAAATAGCTATT+GGG + tig0000478:4010-4029 Msa1335500:intergenic 10.0%
!! TAAATAATTAAAATAGCTAT+TGG + tig0000478:4011-4030 Msa1335500:intergenic 10.0%
!! TTAGTAAATTAAAAAAATCA+TGG - tig0000478:4059-4078 Msa1335500:intron 10.0%
!! ATATAAAAAAAAGTAATCTC+AGG + tig0000478:1386-1405 Msa1335500:intergenic 15.0%
!! TAAAAAAAAGAAAGATGAAA+TGG - tig0000478:1961-1980 Msa1335500:CDS 15.0%
!! ATACAAACAAAATAGAATAT+GGG + tig0000478:2588-2607 Msa1335500:intergenic 15.0%
!! AATACAAACAAAATAGAATA+TGG + tig0000478:2589-2608 Msa1335500:intergenic 15.0%
!! AAACTATTTATAATGAATTG+TGG - tig0000478:4402-4421 Msa1335500:intron 15.0%
!! AAATTATCATTGAAAAATAG+GGG + tig0000478:4822-4841 Msa1335500:intergenic 15.0%
!! GAAATTATCATTGAAAAATA+GGG + tig0000478:4823-4842 Msa1335500:intergenic 15.0%
!! AGAAATTATCATTGAAAAAT+AGG + tig0000478:4824-4843 Msa1335500:intergenic 15.0%
!! AAAAACAACATATGAAGATA+CGG - tig0000478:1553-1572 Msa1335500:intron 20.0%
!! AAAAAATAAGTCAATCCAAT+CGG - tig0000478:1638-1657 Msa1335500:intron 20.0%
!!! TGAATTGATAATATGTTGAT+TGG - tig0000478:1868-1887 Msa1335500:CDS 20.0%
!! AGAATTAACTAGCAAAATAT+CGG + tig0000478:1936-1955 Msa1335500:intergenic 20.0%
!! ACATAAATACATAATAGAAG+AGG + tig0000478:2043-2062 Msa1335500:intergenic 20.0%
!! TTCTATTATGTATTTATGTG+AGG - tig0000478:2044-2063 Msa1335500:intron 20.0%
!! TATTATTTGAGCTTATTTAC+TGG + tig0000478:2549-2568 Msa1335500:intergenic 20.0%
!! TGATTAAAAGATATAGATGT+AGG - tig0000478:2664-2683 Msa1335500:intron 20.0%
!! AAAATGTTAGAAAATTTCCT+TGG - tig0000478:2799-2818 Msa1335500:intron 20.0%
!! TTCACTTAGAAAATATGAAT+AGG + tig0000478:2993-3012 Msa1335500:intergenic 20.0%
!! AATATCAAAAAACATGTGTT+TGG + tig0000478:3424-3443 Msa1335500:intergenic 20.0%
!! ATTATTATCTATGTATAGCA+AGG + tig0000478:3539-3558 Msa1335500:intergenic 20.0%
!! AATAAAATACAAAGACAAGT+AGG + tig0000478:3931-3950 Msa1335500:intergenic 20.0%
!!! TCTTTGTATTTTATTCTGTT+TGG - tig0000478:3936-3955 Msa1335500:intron 20.0%
!!! CTTTGTATTTTATTCTGTTT+GGG - tig0000478:3937-3956 Msa1335500:intron 20.0%
!!! TTTGTATTTTATTCTGTTTG+GGG - tig0000478:3938-3957 Msa1335500:intron 20.0%
!! CACTAATTAAAATAGAACTA+TGG + tig0000478:4178-4197 Msa1335500:intergenic 20.0%
!!! TAGTTCTATTTTAATTAGTG+AGG - tig0000478:4178-4197 Msa1335500:intron 20.0%
!!! TTTTTATTTGATCCTTCTAA+CGG + tig0000478:4271-4290 Msa1335500:intergenic 20.0%
!! ATAAACTAAATGCAAATAAC+AGG + tig0000478:4558-4577 Msa1335500:intergenic 20.0%
!!! TGTTATTTGCATTTAGTTTA+TGG - tig0000478:4557-4576 Msa1335500:intron 20.0%
!!! ACATGAATATTTTCATTTTC+AGG - tig0000478:5160-5179 Msa1335500:intron 20.0%
!!! CATGAATATTTTCATTTTCA+GGG - tig0000478:5161-5180 Msa1335500:intron 20.0%
! AAATATTCGGTCGTATATTT+CGG + tig0000478:1008-1027 None:intergenic 25.0%
!! GATTAAACCAGATTTTTGAT+CGG + tig0000478:1061-1080 Msa1335500:intergenic 25.0%
! GCTTAAGTTAAAAAATAAGC+CGG + tig0000478:1481-1500 Msa1335500:intergenic 25.0%
! ATGTATTCTTTACAGATTCA+TGG - tig0000478:1804-1823 Msa1335500:intron 25.0%
! TTTAACTGCAATATATACTG+TGG - tig0000478:2001-2020 Msa1335500:intron 25.0%
! AGTTATAATGAATTTGAGCA+TGG - tig0000478:2270-2289 Msa1335500:intron 25.0%
!!! GCTGTTTTAATAAGCTATTT+TGG - tig0000478:2432-2451 Msa1335500:intron 25.0%
!!! AGCTTATGTTGATTTATTTC+TGG - tig0000478:2872-2891 Msa1335500:intron 25.0%
! GTGAAATAAATGTATTTCCA+TGG - tig0000478:3008-3027 Msa1335500:intron 25.0%
!!! TTTTTTCCTAAAGAACATGT+AGG + tig0000478:3139-3158 Msa1335500:intergenic 25.0%
!!! CTTTTTCATAATCATGATCA+TGG + tig0000478:3165-3184 Msa1335500:intergenic 25.0%
! ATAATACAATGGTCTATCAA+CGG + tig0000478:3275-3294 Msa1335500:intergenic 25.0%
! GAAAAAAAATTGTTATGAGC+AGG - tig0000478:3827-3846 Msa1335500:intron 25.0%
! TTAAAAAAATCATGGCTAAG+TGG - tig0000478:4067-4086 Msa1335500:intron 25.0%
! AAAACCAAATGACAGATAAA+AGG + tig0000478:4322-4341 Msa1335500:intergenic 25.0%
! AAATGTCTACTTTGATTAGT+TGG + tig0000478:4374-4393 Msa1335500:intergenic 25.0%
! TGAAATAAGAAGATTCTTTG+AGG - tig0000478:4525-4544 Msa1335500:intron 25.0%
!!! TTTACTCATGATTGATTTTC+AGG - tig0000478:4779-4798 Msa1335500:intron 25.0%
! CTAGATTTGTAGTATGAAAA+AGG + tig0000478:5068-5087 Msa1335500:intergenic 25.0%
!!! TCATACTACAAATCTAGTTT+TGG - tig0000478:5071-5090 Msa1335500:intron 25.0%
! AGTAAAATCGTTGAAGATTA+AGG + tig0000478:5105-5124 Msa1335500:intergenic 25.0%
! AATTTAGAGATCATTGCAAT+TGG + tig0000478:5248-5267 Msa1335500:intergenic 25.0%
GAAATATACGACCGAATATT+TGG - tig0000478:1007-1026 Msa1335500:three_prime_UTR 30.0%
TGTGAGGTATACCAAATATT+CGG + tig0000478:1021-1040 Msa1335500:intergenic 30.0%
AAAGAAATGACTTACAGAGT+GGG + tig0000478:1184-1203 Msa1335500:intergenic 30.0%
AAAAGAAATGACTTACAGAG+TGG + tig0000478:1185-1204 Msa1335500:intergenic 30.0%
AAGTAATTCACAACGAGTAA+GGG + tig0000478:1343-1362 Msa1335500:intergenic 30.0%
AAAGTAATTCACAACGAGTA+AGG + tig0000478:1344-1363 Msa1335500:intergenic 30.0%
TTACTCGTTGTGAATTACTT+TGG - tig0000478:1343-1362 Msa1335500:intron 30.0%
! AAAAAATAAGCCGGTTCAAA+CGG + tig0000478:1472-1491 Msa1335500:intergenic 30.0%
! TTTTTGATAAACACGGCTTA+GGG + tig0000478:1665-1684 Msa1335500:intergenic 30.0%
!!! TTTTTTGATAAACACGGCTT+AGG + tig0000478:1666-1685 Msa1335500:intergenic 30.0%
GTATTCTTTCATTGAGCTTA+GGG + tig0000478:2154-2173 Msa1335500:intergenic 30.0%
AGTATTCTTTCATTGAGCTT+AGG + tig0000478:2155-2174 Msa1335500:intergenic 30.0%
TCAACATAAGCTCCATAATT+TGG + tig0000478:2864-2883 Msa1335500:intergenic 30.0%
GCAACTTATCAAACATAACA+TGG - tig0000478:2894-2913 Msa1335500:intron 30.0%
TTTGGTGGAATAATCTATCT+AGG + tig0000478:2961-2980 Msa1335500:intergenic 30.0%
ATGAATAGGAAACAAGAGTT+TGG + tig0000478:2979-2998 Msa1335500:intergenic 30.0%
AATAAATGTATTTCCATGGC+AGG - tig0000478:3012-3031 Msa1335500:intron 30.0%
AAAGTAGAGAATAGGGAATA+GGG + tig0000478:3111-3130 Msa1335500:intergenic 30.0%
TAAAGTAGAGAATAGGGAAT+AGG + tig0000478:3112-3131 Msa1335500:intergenic 30.0%
! GGAGTTTAAAGTAGAGAATA+GGG + tig0000478:3118-3137 Msa1335500:intergenic 30.0%
! AGGAGTTTAAAGTAGAGAAT+AGG + tig0000478:3119-3138 Msa1335500:intergenic 30.0%
TAAACTCCTACATGTTCTTT+AGG - tig0000478:3130-3149 Msa1335500:intron 30.0%
GGCATAATTTGATATTCAAG+TGG - tig0000478:3328-3347 Msa1335500:intron 30.0%
AGTTATAGCACTCATATCAT+CGG + tig0000478:3397-3416 Msa1335500:intergenic 30.0%
AATCCAACATTGAGTATTCA+AGG + tig0000478:3468-3487 Msa1335500:intergenic 30.0%
ATTGCATGTTATTGTGCTTT+AGG - tig0000478:3491-3510 Msa1335500:intron 30.0%
TAAAGAATACGATCAACCTA+AGG + tig0000478:3633-3652 Msa1335500:intergenic 30.0%
TGATCGTATTCTTTACTCAT+CGG - tig0000478:3638-3657 Msa1335500:intron 30.0%
! TTTTGGATAAAAGTGAAAGC+AGG + tig0000478:3786-3805 Msa1335500:intergenic 30.0%
AAAATACAAAGACAAGTAGG+AGG + tig0000478:3928-3947 Msa1335500:intergenic 30.0%
! TGTTTTATCGTTTCAGTCAT+GGG + tig0000478:4097-4116 Msa1335500:intergenic 30.0%
! ATGTTTTATCGTTTCAGTCA+TGG + tig0000478:4098-4117 Msa1335500:intergenic 30.0%
ACCATGTTATATCACATACA+GGG + tig0000478:4128-4147 Msa1335500:intergenic 30.0%
! ATGATTGAGCATGCAATTTT+TGG - tig0000478:4209-4228 Msa1335500:intron 30.0%
TTTATAATGAATTGTGGTGC+AGG - tig0000478:4408-4427 Msa1335500:intron 30.0%
TTATAATGAATTGTGGTGCA+GGG - tig0000478:4409-4428 Msa1335500:intron 30.0%
ATCCTTGTAACAAATGTACT+TGG - tig0000478:4580-4599 Msa1335500:intron 30.0%
! TTCCAAGTACATTTGTTACA+AGG + tig0000478:4585-4604 Msa1335500:intergenic 30.0%
GATTTGTAGTATGAAAAAGG+TGG + tig0000478:5065-5084 Msa1335500:intergenic 30.0%
!! AACGATTTTACTTTTCCCTT+GGG - tig0000478:5113-5132 Msa1335500:intron 30.0%
GATAAAATAATCATCCCCAA+GGG + tig0000478:5131-5150 Msa1335500:intergenic 30.0%
TGATAAAATAATCATCCCCA+AGG + tig0000478:5132-5151 Msa1335500:intergenic 30.0%
! ATTTCTGTATCACCGTTTTA+TGG - tig0000478:5310-5329 Msa1335500:five_prime_UTR 30.0%
! AAACCAGATTTTTGATCGGA+CGG + tig0000478:1057-1076 Msa1335500:intergenic 35.0%
AGTAATTCACAACGAGTAAG+GGG + tig0000478:1342-1361 Msa1335500:intergenic 35.0%
TCTCCTGCTACATCTAATTA+AGG - tig0000478:1444-1463 Msa1335500:CDS 35.0%
CTCCTGCTACATCTAATTAA+GGG - tig0000478:1445-1464 Msa1335500:CDS 35.0%
! TGAAGATACGGTTTTCGTTA+TGG - tig0000478:1565-1584 Msa1335500:intron 35.0%
! TGAGGTTTTTATGCTCTTGT+AGG - tig0000478:2062-2081 Msa1335500:intron 35.0%
!! TATTGTTTGCGAAGTTGGTA+TGG - tig0000478:2085-2104 Msa1335500:intron 35.0%
!! ATCATGACGGATCAAATGAA+TGG - tig0000478:2111-2130 Msa1335500:intron 35.0%
GAATACTCTCTTCAATGTCA+CGG - tig0000478:2168-2187 Msa1335500:intron 35.0%
! TAAGCTTTGTGAGGCTATTT+GGG + tig0000478:2523-2542 Msa1335500:intergenic 35.0%
! ATAAGCTTTGTGAGGCTATT+TGG + tig0000478:2524-2543 Msa1335500:intergenic 35.0%
AAATAGCCTCACAAAGCTTA+TGG - tig0000478:2523-2542 Msa1335500:intron 35.0%
AAATAGAATATGGGCGAGTT+TGG + tig0000478:2579-2598 Msa1335500:intergenic 35.0%
!!! TTTTTTTTAAATGCAGGGCC+AGG - tig0000478:2718-2737 Msa1335500:CDS 35.0%
CTTACACAGTTGAAAACTGA+TGG + tig0000478:2748-2767 Msa1335500:intergenic 35.0%
TGCAAGTAACATTTCTTCCA+AGG + tig0000478:2819-2838 Msa1335500:intergenic 35.0%
AATAGGAAACAAGAGTTTGG+TGG + tig0000478:2976-2995 Msa1335500:intergenic 35.0%
TGAAATTGGCAAAGGAAGTA+AGG - tig0000478:3039-3058 Msa1335500:intron 35.0%
AAGTAAGGTTAAGTATGAGC+TGG - tig0000478:3054-3073 Msa1335500:intron 35.0%
! CAAGACAAGTGGACTTATAA+AGG - tig0000478:3078-3097 Msa1335500:intron 35.0%
GTTACACAACTCCACAAAAT+CGG + tig0000478:3223-3242 Msa1335500:intergenic 35.0%
! TTGACATCATCTGACGTTTT+AGG + tig0000478:3245-3264 Msa1335500:intergenic 35.0%
CCCTTTCATCCTTAACTATT+GGG + tig0000478:3310-3329 Msa1335500:intergenic 35.0%
CCCAATAGTTAAGGATGAAA+GGG - tig0000478:3307-3326 Msa1335500:intron 35.0%
CATCCTTGAATACTCAATGT+TGG - tig0000478:3462-3481 Msa1335500:intron 35.0%
TTCTGTTTGGGGAAATGAAA+AGG - tig0000478:3949-3968 Msa1335500:intron 35.0%
ACCCTGTATGTGATATAACA+TGG - tig0000478:4124-4143 Msa1335500:intron 35.0%
CACCATGTTATATCACATAC+AGG + tig0000478:4129-4148 Msa1335500:intergenic 35.0%
!!! GCAATTTTTGGAGCAACAAA+AGG - tig0000478:4221-4240 Msa1335500:CDS 35.0%
!! AAGGAAACTTGTTGTGTATG+CGG - tig0000478:4240-4259 Msa1335500:CDS 35.0%
CCAAATGACAGATAAAAGGA+GGG + tig0000478:4318-4337 Msa1335500:intergenic 35.0%
ACCAAATGACAGATAAAAGG+AGG + tig0000478:4319-4338 Msa1335500:intergenic 35.0%
CTTTGATGTCTGTATAATGG+CGG + tig0000478:4483-4502 Msa1335500:intergenic 35.0%
GCTCTTTGATGTCTGTATAA+TGG + tig0000478:4486-4505 Msa1335500:intergenic 35.0%
TAACGACATGCATATGTATG+CGG + tig0000478:4743-4762 Msa1335500:intergenic 35.0%
GAAAAGAGAAAAAGCTCACA+TGG + tig0000478:5034-5053 Msa1335500:intergenic 35.0%
TATGAAAAAGGTGGAGATCA+TGG + tig0000478:5056-5075 Msa1335500:intergenic 35.0%
!! CAACGATTTTACTTTTCCCT+TGG - tig0000478:5112-5131 Msa1335500:intron 35.0%
!! ACGATTTTACTTTTCCCTTG+GGG - tig0000478:5114-5133 Msa1335500:intron 35.0%
! CAACTATGTAAGAAGCATAG+AGG + tig0000478:5188-5207 Msa1335500:intergenic 35.0%
CTTACATAGTTGAGAGCTTA+AGG - tig0000478:5196-5215 Msa1335500:intron 35.0%
GAAACAAGGACTTAGATCAG+CGG + tig0000478:1113-1132 Msa1335500:intergenic 40.0%
ACGCGATTTCAATCTCATTC+AGG + tig0000478:1235-1254 Msa1335500:intergenic 40.0%
GACCCTTAATTAGATGTAGC+AGG + tig0000478:1450-1469 Msa1335500:intergenic 40.0%
AATTAAGGGTCCGTTTGAAC+CGG - tig0000478:1459-1478 Msa1335500:CDS 40.0%
ACTAGCAAAATATCGGTGAG+TGG + tig0000478:1929-1948 Msa1335500:intergenic 40.0%
! GTAGGTATTGTTTGCGAAGT+TGG - tig0000478:2080-2099 Msa1335500:intron 40.0%
GTTGGTATGGCTAATCATGA+CGG - tig0000478:2098-2117 Msa1335500:intron 40.0%
CTATCTCTACATCATGCCAA+GGG + tig0000478:2211-2230 Msa1335500:intergenic 40.0%
GAGATAGGTATGAAACCTTG+CGG - tig0000478:2224-2243 Msa1335500:intron 40.0%
TGACTGAAAAAACATCCGCA+AGG + tig0000478:2242-2261 Msa1335500:intergenic 40.0%
! TGTTACTTGCAGCAGCATTA+AGG - tig0000478:2828-2847 Msa1335500:intron 40.0%
GTTACTTGCAGCAGCATTAA+GGG - tig0000478:2829-2848 Msa1335500:intron 40.0%
ATTCCAGATTGCTAGTGTCA+TGG + tig0000478:2920-2939 Msa1335500:intergenic 40.0%
CAGGTGATTGAAATTGGCAA+AGG - tig0000478:3031-3050 Msa1335500:intron 40.0%
ACAATGGTCTATCAACGGAT+AGG + tig0000478:3270-3289 Msa1335500:intergenic 40.0%
TTCGTGCACGGATAATACAA+TGG + tig0000478:3286-3305 Msa1335500:intergenic 40.0%
GCCCAATAGTTAAGGATGAA+AGG - tig0000478:3306-3325 Msa1335500:intron 40.0%
GCCCTTTCATCCTTAACTAT+TGG + tig0000478:3311-3330 Msa1335500:intergenic 40.0%
ACCGAAGCATAACTAACTCA+TGG - tig0000478:3599-3618 Msa1335500:intron 40.0%
CCCATGAGTTAGTTATGCTT+CGG + tig0000478:3603-3622 Msa1335500:intergenic 40.0%
CCGAAGCATAACTAACTCAT+GGG - tig0000478:3600-3619 Msa1335500:intron 40.0%
! ACTCATGGGCTAAATACCTT+AGG - tig0000478:3614-3633 Msa1335500:intron 40.0%
GGATAAAACCGTAGTTGTGT+GGG + tig0000478:3671-3690 Msa1335500:intergenic 40.0%
TGTCTTCACAAATGGTTCGT+GGG + tig0000478:3692-3711 Msa1335500:intergenic 40.0%
AGGATCACTGTCTTCACAAA+TGG + tig0000478:3700-3719 Msa1335500:intergenic 40.0%
TTGTGAAGACAGTGATCCTA+TGG - tig0000478:3701-3720 Msa1335500:intron 40.0%
ATCAGAACCAGAACATCCAT+AGG + tig0000478:3720-3739 Msa1335500:intergenic 40.0%
ACTTCTACCTGGTCAATCAT+CGG + tig0000478:3903-3922 Msa1335500:intergenic 40.0%
! CCCTCCTTTTATCTGTCATT+TGG - tig0000478:4315-4334 Msa1335500:CDS 40.0%
! CTGTATAATGGCGGAATTCA+GGG + tig0000478:4474-4493 Msa1335500:intergenic 40.0%
! TCTGTATAATGGCGGAATTC+AGG + tig0000478:4475-4494 Msa1335500:intergenic 40.0%
AATTCAAACGTGTGCACTCA+TGG + tig0000478:4717-4736 Msa1335500:intergenic 40.0%
ATGCATCAAACTAGAGGATG+TGG + tig0000478:4910-4929 Msa1335500:intergenic 40.0%
CTCATTCTTCTTGTCTAGTG+TGG + tig0000478:4947-4966 Msa1335500:intergenic 40.0%
! GGAATACTTGATGGCATCAA+CGG + tig0000478:5013-5032 Msa1335500:intergenic 40.0%
AGCTCACATGGAATACTTGA+TGG + tig0000478:5022-5041 Msa1335500:intergenic 40.0%
TCGGTCGTATATTTCGGACA+CGG + tig0000478:1002-1021 None:intergenic 45.0%
TTTGATCGGACGGTTGTGAA+TGG + tig0000478:1047-1066 Msa1335500:intergenic 45.0%
CAACCGTCCGATCAAAAATC+TGG - tig0000478:1051-1070 Msa1335500:three_prime_UTR 45.0%
CGACTAGGGAAGAAGAAACA+AGG + tig0000478:1127-1146 Msa1335500:intergenic 45.0%
GAGAGTAGTGAGTCAGAGTT+TGG + tig0000478:1156-1175 Msa1335500:intergenic 45.0%
CCTATCTCTACATCATGCCA+AGG + tig0000478:2212-2231 Msa1335500:intergenic 45.0%
CCTTGGCATGATGTAGAGAT+AGG - tig0000478:2209-2228 Msa1335500:intron 45.0%
! TACTGGCCATAAGCTTTGTG+AGG + tig0000478:2532-2551 Msa1335500:intergenic 45.0%
GAATATGGGCGAGTTTGGAT+TGG + tig0000478:2574-2593 Msa1335500:intergenic 45.0%
TTGAAAACTGATGGAGCTCC+TGG + tig0000478:2739-2758 Msa1335500:intergenic 45.0%
CCAATTTCAATCACCTGCCA+TGG + tig0000478:3028-3047 Msa1335500:intergenic 45.0%
CCATGGCAGGTGATTGAAAT+TGG - tig0000478:3025-3044 Msa1335500:intron 45.0%
TATGAGCTGGACAAGACAAG+TGG - tig0000478:3067-3086 Msa1335500:intron 45.0%
CAAAATCGGAAGGTGAGATG+AGG + tig0000478:3209-3228 Msa1335500:intergenic 45.0%
! CATCTCACCTTCCGATTTTG+TGG - tig0000478:3209-3228 Msa1335500:intron 45.0%
CACAACTCCACAAAATCGGA+AGG + tig0000478:3219-3238 Msa1335500:intergenic 45.0%
TAACTATTGGGCTTCGTGCA+CGG + tig0000478:3298-3317 Msa1335500:intergenic 45.0%
TGCACGAAGCCCAATAGTTA+AGG - tig0000478:3298-3317 Msa1335500:intron 45.0%
TCATCGGAAATGCATTGCGA+GGG + tig0000478:3381-3400 Msa1335500:intergenic 45.0%
ATCATCGGAAATGCATTGCG+AGG + tig0000478:3382-3401 Msa1335500:intergenic 45.0%
GTTGTCTACCCACACAACTA+CGG - tig0000478:3660-3679 Msa1335500:intron 45.0%
GGGATAAAACCGTAGTTGTG+TGG + tig0000478:3672-3691 Msa1335500:intergenic 45.0%
CTGTCTTCACAAATGGTTCG+TGG + tig0000478:3693-3712 Msa1335500:intergenic 45.0%
CAGTGATCCTATGGATGTTC+TGG - tig0000478:3710-3729 Msa1335500:intron 45.0%
TTAGTCCAATAGCACGAGCA+CGG + tig0000478:3878-3897 Msa1335500:intergenic 45.0%
ACTAATGCCGATGATTGACC+AGG - tig0000478:3893-3912 Msa1335500:intron 45.0%
AAATGAAAAGGAGCTGCGTG+AGG - tig0000478:3961-3980 Msa1335500:intron 45.0%
AATGAAAAGGAGCTGCGTGA+GGG - tig0000478:3962-3981 Msa1335500:intron 45.0%
TATGCGGTAACACCGTTAGA+AGG - tig0000478:4256-4275 Msa1335500:CDS 45.0%
TCAAAGAGCTTCCTCCACAT+CGG - tig0000478:4497-4516 Msa1335500:intron 45.0%
CTTATTTCAGCCAACCGATG+TGG + tig0000478:4514-4533 Msa1335500:intergenic 45.0%
GGACACATGCATCAAACTAG+AGG + tig0000478:4916-4935 Msa1335500:intergenic 45.0%
! TTGTCTAGTGTGGCTAGCTA+AGG + tig0000478:4937-4956 Msa1335500:intergenic 45.0%
GCAGCACAAGTGCCATAAAA+CGG + tig0000478:5325-5344 Msa1335500:intergenic 45.0%
GACACGGTCTCAGTGATGTT+AGG + tig0000478:986-1005 None:intergenic 50.0%
CGGTTGTGAATGGAGATGTG+AGG + tig0000478:1037-1056 Msa1335500:intergenic 50.0%
ACAAGGACTTAGATCAGCGG+CGG + tig0000478:1110-1129 Msa1335500:intergenic 50.0%
AGTGAGTCAGAGTTTGGCGA+TGG + tig0000478:1150-1169 Msa1335500:intergenic 50.0%
TTCACAACGAGTAAGGGGCA+CGG + tig0000478:1337-1356 Msa1335500:intergenic 50.0%
TTGCAGCAGCATTAAGGGCT+CGG - tig0000478:2834-2853 Msa1335500:intron 50.0%
! GGGCTCGGTCAACCAAATTA+TGG - tig0000478:2849-2868 Msa1335500:intron 50.0%
TGGCCATGACACTAGCAATC+TGG - tig0000478:2914-2933 Msa1335500:intron 50.0%
!! GGATGTTCTGGTTCTGATGC+AGG - tig0000478:3722-3741 Msa1335500:intron 50.0%
AGTAGGAGGCAACTTCTACC+TGG + tig0000478:3914-3933 Msa1335500:intergenic 50.0%
AATTGTGGTGCAGGGTGAGA+GGG - tig0000478:4417-4436 Msa1335500:intron 50.0%
ATTTCAGCCAACCGATGTGG+AGG + tig0000478:4511-4530 Msa1335500:intergenic 50.0%
ACGTGTGCACTCATGGCAAA+TGG + tig0000478:4710-4729 Msa1335500:intergenic 50.0%
TTGCGCTTGTGCCAGATACA+GGG + tig0000478:5347-5366 Msa1335500:intergenic 50.0%
GAGTTTGGCGATGGCGACTA+GGG + tig0000478:1141-1160 Msa1335500:intergenic 55.0%
AGAGTTTGGCGATGGCGACT+AGG + tig0000478:1142-1161 Msa1335500:intergenic 55.0%
AACACGGCTTAGGGTCCGAT+TGG + tig0000478:1656-1675 Msa1335500:intergenic 55.0%
GAACTGTTGCTGCTCACCCT+TGG - tig0000478:2192-2211 Msa1335500:intron 55.0%
AATAGCACGAGCACGGAGGA+AGG + tig0000478:3871-3890 Msa1335500:intergenic 55.0%
TTCCTCCGTGCTCGTGCTAT+TGG - tig0000478:3870-3889 Msa1335500:intron 55.0%
!! CTGCGTGAGGGTGTTTGGAA+GGG - tig0000478:3974-3993 Msa1335500:intron 55.0%
!! TGCGTGAGGGTGTTTGGAAG+GGG - tig0000478:3975-3994 Msa1335500:intron 55.0%
GAATTGTGGTGCAGGGTGAG+AGG - tig0000478:4416-4435 Msa1335500:intron 55.0%
AGAGCTTCCTCCACATCGGT+TGG - tig0000478:4501-4520 Msa1335500:intron 55.0%
CACTTGTGCTGCCCTGTATC+TGG - tig0000478:5333-5352 Msa1335500:five_prime_UTR 55.0%
CTTGCGCTTGTGCCAGATAC+AGG + tig0000478:5348-5367 Msa1335500:intergenic 55.0%
ATCGGTGAGTGGCGCGACAT+TGG + tig0000478:1918-1937 Msa1335500:intergenic 60.0%
GTCCAATAGCACGAGCACGG+AGG + tig0000478:3875-3894 Msa1335500:intergenic 60.0%
!! AGGAGCTGCGTGAGGGTGTT+TGG - tig0000478:3969-3988 Msa1335500:intron 60.0%
!! GCTGCGTGAGGGTGTTTGGA+AGG - tig0000478:3973-3992 Msa1335500:intron 60.0%
!! GCGTGAGGGTGTTTGGAAGG+GGG - tig0000478:3976-3995 Msa1335500:intron 60.0%
!! CGTGAGGGTGTTTGGAAGGG+GGG - tig0000478:3977-3996 Msa1335500:intron 60.0%
! AGGGTGTTTGGAAGGGGGGA+AGG - tig0000478:3981-4000 Msa1335500:intron 60.0%
GCATCAACGGCAGACTCAGC+TGG + tig0000478:5000-5019 Msa1335500:intergenic 60.0%
GAGCAGGAGCCTGTGCTACC+CGG - tig0000478:3843-3862 Msa1335500:intron 65.0%
!! AGGAAGGTGCCGGGTAGCAC+AGG + tig0000478:3855-3874 Msa1335500:intergenic 65.0%
! ACGAGCACGGAGGAAGGTGC+CGG + tig0000478:3865-3884 Msa1335500:intergenic 65.0%
!! CGAGCACGGAGGAAGGTGCC+GGG + tig0000478:3864-3883 Msa1335500:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0000478 gene 954 5488 954 ID=Msa1335500;Name=Msa1335500
tig0000478 mRNA 954 5488 954 ID=Msa1335500-mRNA-1;Parent=Msa1335500;Name=Msa1335500-mRNA-1;_AED=0.14;_eAED=0.14;_QI=255|0.87|0.77|1|0.87|0.88|9|264|232
tig0000478 exon 954 1260 954 ID=Msa1335500-mRNA-1:exon:240;Parent=Msa1335500-mRNA-1
tig0000478 exon 1408 1502 1408 ID=Msa1335500-mRNA-1:exon:239;Parent=Msa1335500-mRNA-1
tig0000478 exon 1848 2012 1848 ID=Msa1335500-mRNA-1:exon:238;Parent=Msa1335500-mRNA-1
tig0000478 exon 2528 2593 2528 ID=Msa1335500-mRNA-1:exon:237;Parent=Msa1335500-mRNA-1
tig0000478 exon 2699 2806 2699 ID=Msa1335500-mRNA-1:exon:236;Parent=Msa1335500-mRNA-1
tig0000478 exon 3343 3408 3343 ID=Msa1335500-mRNA-1:exon:235;Parent=Msa1335500-mRNA-1
tig0000478 exon 3680 3708 3680 ID=Msa1335500-mRNA-1:exon:234;Parent=Msa1335500-mRNA-1
tig0000478 exon 4212 4358 4212 ID=Msa1335500-mRNA-1:exon:233;Parent=Msa1335500-mRNA-1
tig0000478 exon 5254 5488 5254 ID=Msa1335500-mRNA-1:exon:232;Parent=Msa1335500-mRNA-1
tig0000478 five_prime_UTR 5254 5488 5254 ID=Msa1335500-mRNA-1:five_prime_utr;Parent=Msa1335500-mRNA-1
tig0000478 five_prime_UTR 4339 4358 4339 ID=Msa1335500-mRNA-1:five_prime_utr;Parent=Msa1335500-mRNA-1
tig0000478 CDS 4212 4338 4212 ID=Msa1335500-mRNA-1:cds;Parent=Msa1335500-mRNA-1
tig0000478 CDS 3680 3708 3680 ID=Msa1335500-mRNA-1:cds;Parent=Msa1335500-mRNA-1
tig0000478 CDS 3343 3408 3343 ID=Msa1335500-mRNA-1:cds;Parent=Msa1335500-mRNA-1
tig0000478 CDS 2699 2806 2699 ID=Msa1335500-mRNA-1:cds;Parent=Msa1335500-mRNA-1
tig0000478 CDS 2528 2593 2528 ID=Msa1335500-mRNA-1:cds;Parent=Msa1335500-mRNA-1
tig0000478 CDS 1848 2012 1848 ID=Msa1335500-mRNA-1:cds;Parent=Msa1335500-mRNA-1
tig0000478 CDS 1408 1502 1408 ID=Msa1335500-mRNA-1:cds;Parent=Msa1335500-mRNA-1
tig0000478 CDS 1218 1260 1218 ID=Msa1335500-mRNA-1:cds;Parent=Msa1335500-mRNA-1
tig0000478 three_prime_UTR 954 1217 954 ID=Msa1335500-mRNA-1:three_prime_utr;Parent=Msa1335500-mRNA-1
Gene Sequence

>Msa1335500

ATGGCTAATCATGACGGATCAAATGAATGGTCTTCGAGTTTAACTCACCCTAAGCTCAATGAAAGAATACTCTCTTCAATGTCACGGAGAACTGTTGCTGCTCACCCTTGGCATGATGTAGAGATAGGGCCAGGAGCTCCATCAGTTTTCAACTGTGTGATTGAAATTGGCAAAGGAAGTAAGGTTAAGTATGAGCTGGACAAGACAAGTGGACTTATAAAGGTTGATCGTATTCTTTACTCATCGGTTGTCTACCCACACAACTACGGTTTTATCCCACGAACCATTTGTGAAGACAGTGATCCTATGGATGTTCTGGTTCTGATGCAGGAGCCTGTGCTACCCGGCACCTTCCTCCGTGCTCGTGCTATTGGACTAATGCCGATGATTGACCAGGGTGAGAGGGATGACAAGATCATAGCAGTTTGTGCTGACGACCCTGAATTCCGCCATTATACAGACATCAAAGAGCTTCCTCCACATCGGTTGGCTGAAATAAGAAGATTCTTTGAGGATTGTATCCTGTTATTTGCATTTAGTTTATGGATCCTTGTAACAAATCTAGCCACACTAGACAAGAAGAATGAGAACAAAAAAGTTGATGTTGACGATTTTCTACCAGCTGAGTCTGCCGTTGATGCCATCAAGTATTCCATGGACCTCTATGCTTCTTACATAGTTGAGAGCTTAAGGAAGTGA

Protein sequence

>Msa1335500

MANHDGSNEWSSSLTHPKLNERILSSMSRRTVAAHPWHDVEIGPGAPSVFNCVIEIGKGSKVKYELDKTSGLIKVDRILYSSVVYPHNYGFIPRTICEDSDPMDVLVLMQEPVLPGTFLRARAIGLMPMIDQGERDDKIIAVCADDPEFRHYTDIKELPPHRLAEIRRFFEDCILLFAFSLWILVTNLATLDKKNENKKVDVDDFLPAESAVDAIKYSMDLYASYIVESLRK*