Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722300 | KEH27764.1 | 87.952 | 166 | 16 | 1 | 3 | 168 | 1 | 162 | 1.15e-101 | 301 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722300 | A0A072UD94 | 87.952 | 166 | 16 | 1 | 3 | 168 | 1 | 162 | 5.51e-102 | 301 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024930 | Msa0722300 | -0.802151 | 6.428808e-49 | -8.615850e-47 |
| Msa0029630 | Msa0722300 | -0.827405 | 1.592966e-54 | -8.615850e-47 |
| Msa0038870 | Msa0722300 | -0.821495 | 3.917752e-53 | -8.615850e-47 |
| Msa0079920 | Msa0722300 | -0.816344 | 5.803362e-52 | -8.615850e-47 |
| Msa0090550 | Msa0722300 | -0.801906 | 7.217024e-49 | -8.615850e-47 |
| Msa0093010 | Msa0722300 | -0.824192 | 9.219173e-54 | -8.615850e-47 |
| Msa0095360 | Msa0722300 | -0.834012 | 3.832058e-56 | -8.615850e-47 |
| Msa0095770 | Msa0722300 | -0.838912 | 2.169485e-57 | -8.615850e-47 |
| Msa0604290 | Msa0722300 | -0.832366 | 9.847614e-56 | -8.615850e-47 |
| Msa0640940 | Msa0722300 | -0.829024 | 6.488207e-55 | -8.615850e-47 |
| Msa0642970 | Msa0722300 | -0.815605 | 8.484319e-52 | -8.615850e-47 |
| Msa0679360 | Msa0722300 | -0.824631 | 7.270990e-54 | -8.615850e-47 |
| Msa0682680 | Msa0722300 | -0.823471 | 1.360901e-53 | -8.615850e-47 |
| Msa0693210 | Msa0722300 | -0.810505 | 1.115092e-50 | -8.615850e-47 |
| Msa0694990 | Msa0722300 | -0.814763 | 1.305532e-51 | -8.615850e-47 |
| Msa0722300 | Msa0722350 | 0.978481 | 6.471537e-146 | -8.615850e-47 |
| Msa0722300 | Msa0743530 | -0.822235 | 2.640038e-53 | -8.615850e-47 |
| Msa0722300 | Msa0746170 | -0.829638 | 4.601606e-55 | -8.615850e-47 |
| Msa0722300 | Msa0746210 | -0.830331 | 3.119026e-55 | -8.615850e-47 |
| Msa0722300 | Msa0822170 | -0.827405 | 1.592966e-54 | -8.615850e-47 |
| Msa0722300 | Msa0828590 | -0.832224 | 1.067973e-55 | -8.615850e-47 |
| Msa0722300 | Msa0829220 | -0.816845 | 4.482981e-52 | -8.615850e-47 |
| Msa0722300 | Msa0838370 | -0.813880 | 2.045922e-51 | -8.615850e-47 |
| Msa0722300 | Msa0844280 | -0.842494 | 2.499542e-58 | -8.615850e-47 |
| Msa0722300 | Msa0858440 | -0.804797 | 1.818140e-49 | -8.615850e-47 |
| Msa0722300 | Msa0872250 | -0.823247 | 1.535361e-53 | -8.615850e-47 |
| Msa0722300 | Msa0944200 | -0.833243 | 5.964994e-56 | -8.615850e-47 |
| Msa0722300 | Msa0958000 | -0.824594 | 7.416449e-54 | -8.615850e-47 |
| Msa0722300 | Msa0974950 | -0.806523 | 7.891307e-50 | -8.615850e-47 |
| Msa0722300 | Msa0980540 | -0.829928 | 3.911788e-55 | -8.615850e-47 |
| Msa0722300 | Msa1037520 | -0.816837 | 4.500519e-52 | -8.615850e-47 |
| Msa0722300 | Msa1075970 | -0.812182 | 4.821233e-51 | -8.615850e-47 |
| Msa0722300 | Msa1096620 | -0.800443 | 1.437879e-48 | -8.615850e-47 |
| Msa0722300 | Msa1109780 | 0.800095 | 1.692340e-48 | -8.615850e-47 |
| Msa0722300 | Msa1127430 | -0.802000 | 6.905695e-49 | -8.615850e-47 |
| Msa0722300 | Msa1130400 | -0.847069 | 1.459823e-59 | -8.615850e-47 |
| Msa0722300 | Msa1154490 | -0.810113 | 1.354603e-50 | -8.615850e-47 |
| Msa0722300 | Msa1158640 | 0.811147 | 8.096793e-51 | -8.615850e-47 |
| Msa0722300 | Msa1165780 | -0.804037 | 2.617630e-49 | -8.615850e-47 |
| Msa0722300 | Msa1178580 | -0.841194 | 5.509367e-58 | -8.615850e-47 |
| Msa0722300 | Msa1188560 | -0.811131 | 8.163243e-51 | -8.615850e-47 |
| Msa0722300 | Msa1192140 | 0.811711 | 6.106235e-51 | -8.615850e-47 |
| Msa0722300 | Msa1205480 | -0.804597 | 2.001846e-49 | -8.615850e-47 |
| Msa0722300 | Msa1205590 | -0.817889 | 2.609293e-52 | -8.615850e-47 |
| Msa0722300 | Msa1211350 | -0.811264 | 7.636758e-51 | -8.615850e-47 |
| Msa0722300 | Msa1233850 | -0.849732 | 2.677601e-60 | -8.615850e-47 |
| Msa0722300 | Msa1271130 | -0.814448 | 1.532805e-51 | -8.615850e-47 |
| Msa0722300 | Msa1276150 | -0.841291 | 5.195155e-58 | -8.615850e-47 |
| Msa0722300 | Msa1327640 | -0.817381 | 3.396036e-52 | -8.615850e-47 |
| Msa0722300 | Msa1336040 | -0.809375 | 1.952094e-50 | -8.615850e-47 |
| Msa0722300 | Msa1340480 | -0.817907 | 2.585324e-52 | -8.615850e-47 |
| Msa0722300 | Msa1368530 | -0.810851 | 9.385956e-51 | -8.615850e-47 |
| Msa0722300 | Msa1370590 | -0.819666 | 1.030331e-52 | -8.615850e-47 |
| Msa0722300 | Msa1374390 | 0.966653 | 3.286931e-126 | -8.615850e-47 |
| Msa0722300 | Msa1384100 | -0.820687 | 6.011922e-53 | -8.615850e-47 |
| Msa0722300 | Msa1444120 | -0.820176 | 7.876348e-53 | -8.615850e-47 |
| Msa0722300 | Msa1446080 | -0.835116 | 2.023849e-56 | -8.615850e-47 |
| Msa0722300 | Msa1458290 | -0.807535 | 4.821064e-50 | -8.615850e-47 |
| Msa0125450 | Msa0722300 | -0.824980 | 6.016227e-54 | -8.615850e-47 |
| Msa0125540 | Msa0722300 | -0.805289 | 1.434239e-49 | -8.615850e-47 |
| Msa0136120 | Msa0722300 | -0.805061 | 1.600815e-49 | -8.615850e-47 |
| Msa0177960 | Msa0722300 | -0.801848 | 7.417499e-49 | -8.615850e-47 |
| Msa0183870 | Msa0722300 | -0.827687 | 1.363016e-54 | -8.615850e-47 |
| Msa0217670 | Msa0722300 | -0.822137 | 2.782251e-53 | -8.615850e-47 |
| Msa0231790 | Msa0722300 | -0.804756 | 1.854549e-49 | -8.615850e-47 |
| Msa0236620 | Msa0722300 | -0.810174 | 1.313967e-50 | -8.615850e-47 |
| Msa0382370 | Msa0722300 | -0.824685 | 7.060483e-54 | -8.615850e-47 |
| Msa0385500 | Msa0722300 | -0.844035 | 9.698449e-59 | -8.615850e-47 |
| Msa0403770 | Msa0722300 | -0.809874 | 1.525246e-50 | -8.615850e-47 |
| Msa0432160 | Msa0722300 | -0.804693 | 1.910699e-49 | -8.615850e-47 |
| Msa0462600 | Msa0722300 | -0.845152 | 4.852314e-59 | -8.615850e-47 |
| Msa0476680 | Msa0722300 | -0.800639 | 1.311280e-48 | -8.615850e-47 |
| Msa0482040 | Msa0722300 | -0.810583 | 1.072609e-50 | -8.615850e-47 |
| Msa0243090 | Msa0722300 | -0.803115 | 4.065556e-49 | -8.615850e-47 |
| Msa0244970 | Msa0722300 | -0.801477 | 8.840462e-49 | -8.615850e-47 |
| Msa0244980 | Msa0722300 | -0.832728 | 8.011345e-56 | -8.615850e-47 |
| Msa0245580 | Msa0722300 | -0.832458 | 9.344468e-56 | -8.615850e-47 |
| Msa0257490 | Msa0722300 | -0.844643 | 6.656205e-59 | -8.615850e-47 |
| Msa0269470 | Msa0722300 | -0.822307 | 2.540680e-53 | -8.615850e-47 |
| Msa0281530 | Msa0722300 | -0.834750 | 2.501437e-56 | -8.615850e-47 |
| Msa0296790 | Msa0722300 | -0.850242 | 1.927560e-60 | -8.615850e-47 |
| Msa0310430 | Msa0722300 | -0.808294 | 3.323552e-50 | -8.615850e-47 |
| Msa0320590 | Msa0722300 | -0.829778 | 4.254864e-55 | -8.615850e-47 |
| Msa0343850 | Msa0722300 | -0.803820 | 2.904399e-49 | -8.615850e-47 |
| Msa0363640 | Msa0722300 | -0.833059 | 6.628057e-56 | -8.615850e-47 |
| Msa0482940 | Msa0722300 | -0.818946 | 1.503497e-52 | -8.615850e-47 |
| Msa0491000 | Msa0722300 | -0.822815 | 1.936174e-53 | -8.615850e-47 |
| Msa0496450 | Msa0722300 | -0.830007 | 3.742385e-55 | -8.615850e-47 |
| Msa0542560 | Msa0722300 | -0.851768 | 7.155774e-61 | -8.615850e-47 |
| Msa0547160 | Msa0722300 | -0.819223 | 1.300361e-52 | -8.615850e-47 |
| Msa0555640 | Msa0722300 | -0.803939 | 2.743336e-49 | -8.615850e-47 |
| Msa0600080 | Msa0722300 | -0.823442 | 1.381822e-53 | -8.615850e-47 |
| Msa0600450 | Msa0722300 | -0.820949 | 5.233208e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722300 | MtrunA17_Chr5g0413731 | 87.952 | 166 | 16 | 1 | 3 | 168 | 1 | 162 | 1.23e-105 | 301 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 62 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATTTGATTTCCATGATTC+AGG | 0.201084 | 5_1:+19514115 | Msa0722300:CDS |
| GTTCGTAGTTCCATCATATT+TGG | 0.285239 | 5_1:+19514047 | Msa0722300:CDS |
| TTTGTAACTACTACACTATT+TGG | 0.299910 | 5_1:+19517854 | Msa0722300:three_prime_UTR |
| TCAAATTTGCAATGAGTAAC+TGG | 0.314460 | 5_1:-19517990 | None:intergenic |
| TTGAATGTCTATGTCTTATA+TGG | 0.317029 | 5_1:+19517885 | Msa0722300:three_prime_UTR |
| ATAGCATTGCACACAGATTC+AGG | 0.336433 | 5_1:+19513886 | Msa0722300:CDS |
| GTTTGTTCTAGAGTTGATAA+TGG | 0.352413 | 5_1:+19517786 | Msa0722300:three_prime_UTR |
| TTCGCGGTTGGGATCGGCGT+TGG | 0.364788 | 5_1:-19513913 | None:intergenic |
| TCGCGGTTGGGATCGGCGTT+GGG | 0.387791 | 5_1:-19513912 | None:intergenic |
| GCCTTCGAATGGATAAATAA+AGG | 0.391458 | 5_1:+19514083 | Msa0722300:CDS |
| TCGTAGCGACCCCTACTTAG+AGG | 0.405043 | 5_1:-19517941 | None:intergenic |
| GATATCATGTTGCCGCTGTC+GGG | 0.408998 | 5_1:-19513807 | None:intergenic |
| GCTAGCTACCATTGCTGCTC+AGG | 0.421988 | 5_1:+19514227 | Msa0722300:CDS |
| GCCGCTGTCGGGTCCGGCGA+CGG | 0.423022 | 5_1:-19513796 | None:intergenic |
| GACAGCGGCAACATGATATC+TGG | 0.426604 | 5_1:+19513810 | Msa0722300:CDS |
| GTTTGTTTCATCCGTGTGTT+TGG | 0.428901 | 5_1:-19513740 | None:intergenic |
| TCCGGCGACGGCGTCGGCGT+TGG | 0.428911 | 5_1:-19513784 | None:intergenic |
| GAGTGAGATATTTCGCGGTT+GGG | 0.437230 | 5_1:-19513924 | None:intergenic |
| TGTCATTCTCGTGGTCGAAC+CGG | 0.440793 | 5_1:+19514022 | Msa0722300:CDS |
| CATGTTGCCGCTGTCGGGTC+CGG | 0.441152 | 5_1:-19513802 | None:intergenic |
| AGATATCATGTTGCCGCTGT+CGG | 0.447616 | 5_1:-19513808 | None:intergenic |
| AGATATTTCGCGGTTGGGAT+CGG | 0.464805 | 5_1:-19513919 | None:intergenic |
| GTCGGGTCCGGCGACGGCGT+CGG | 0.472172 | 5_1:-19513790 | None:intergenic |
| ACTAATATATACCTGAATCA+TGG | 0.486498 | 5_1:-19514126 | None:intergenic |
| CTTGTTACGTTGCCTTCGAA+TGG | 0.487361 | 5_1:+19514072 | Msa0722300:CDS |
| CAACAAACCCGGCTTTAGAC+AGG | 0.490308 | 5_1:+19514537 | Msa0722300:CDS |
| ATTTACAGACGGAGGTATCT+CGG | 0.495301 | 5_1:-19513970 | None:intergenic |
| GCAGGAAGTAGAGCAGCATC+AGG | 0.498588 | 5_1:+19515565 | Msa0722300:intron |
| GCCAACGCCGACGCCGTCGC+CGG | 0.501229 | 5_1:+19513783 | Msa0722300:CDS |
| GGTAGACTTGAATATGCAAA+AGG | 0.505162 | 5_1:+19517916 | Msa0722300:three_prime_UTR |
| GCAAAAGGTCCCTCTAAGTA+GGG | 0.505245 | 5_1:+19517931 | Msa0722300:three_prime_UTR |
| CGGACTTAATTTGATGATGT+CGG | 0.508222 | 5_1:+19518057 | Msa0722300:three_prime_UTR |
| AGAGTGAGATATTTCGCGGT+TGG | 0.508463 | 5_1:-19513925 | None:intergenic |
| GCCTTTATTTATCCATTCGA+AGG | 0.510518 | 5_1:-19514084 | None:intergenic |
| GGAGGTATCTCGGCGTCGGC+GGG | 0.510674 | 5_1:-19513960 | None:intergenic |
| CAAGAGAGTGAGATATTTCG+CGG | 0.512236 | 5_1:-19513929 | None:intergenic |
| GTAACAAGCTCCAAATATGA+TGG | 0.521027 | 5_1:-19514057 | None:intergenic |
| GAAGCTAACCTGTCTAAAGC+CGG | 0.528336 | 5_1:-19514545 | None:intergenic |
| CATTCTCGTGGTCGAACCGG+TGG | 0.530107 | 5_1:+19514025 | Msa0722300:CDS |
| AAGCCGGGTTTGTTGAATGT+AGG | 0.534427 | 5_1:-19514529 | None:intergenic |
| GATAATGGAAAGATTCATCA+AGG | 0.534613 | 5_1:+19517801 | Msa0722300:three_prime_UTR |
| GTTAATTACCTGAGCAGCAA+TGG | 0.540291 | 5_1:-19514235 | None:intergenic |
| TGCAAAAGGTCCCTCTAAGT+AGG | 0.544935 | 5_1:+19517930 | Msa0722300:three_prime_UTR |
| CGGAGGTATCTCGGCGTCGG+CGG | 0.556350 | 5_1:-19513961 | None:intergenic |
| GAATCTGTGTGCAATGCTAT+CGG | 0.559094 | 5_1:-19513883 | None:intergenic |
| GCGATCTATTATCTCTTCAT+CGG | 0.560568 | 5_1:-19513997 | None:intergenic |
| AAGCTAACCTGTCTAAAGCC+GGG | 0.564832 | 5_1:-19514544 | None:intergenic |
| AGCAAAAGAATCCTTCAGAT+AGG | 0.572865 | 5_1:+19514344 | Msa0722300:CDS |
| CGTAGCGACCCCTACTTAGA+GGG | 0.593498 | 5_1:-19517940 | None:intergenic |
| AGACGGAGGTATCTCGGCGT+CGG | 0.608196 | 5_1:-19513964 | None:intergenic |
| AGATCGCTTTGTCATTCTCG+TGG | 0.608201 | 5_1:+19514013 | Msa0722300:CDS |
| GCCGTCGCCGGACCCGACAG+CGG | 0.608672 | 5_1:+19513795 | Msa0722300:CDS |
| AAACTACGACACCTATCTGA+AGG | 0.613911 | 5_1:-19514355 | None:intergenic |
| GAAGTAGAGCAGCATCAGGA+AGG | 0.616775 | 5_1:+19515569 | Msa0722300:exon |
| ATGATGGAACTACGAACCAC+CGG | 0.618705 | 5_1:-19514041 | None:intergenic |
| AAACCTACATTCAACAAACC+CGG | 0.635609 | 5_1:+19514526 | Msa0722300:CDS |
| ACAACTTAGCAGCATGCAGA+TGG | 0.640567 | 5_1:+19513761 | Msa0722300:exon |
| TCAATAACAAACCAAACACA+CGG | 0.678099 | 5_1:+19513729 | None:intergenic |
| CAAAAGGTCCCTCTAAGTAG+GGG | 0.679241 | 5_1:+19517932 | Msa0722300:three_prime_UTR |
| AAGAACTTCACATTTCAGAG+AGG | 0.691319 | 5_1:+19514396 | Msa0722300:CDS |
| TCATCGGTGAGATTTACAGA+CGG | 0.695451 | 5_1:-19513981 | None:intergenic |
| TCGGTGAGATTTACAGACGG+AGG | 0.702745 | 5_1:-19513978 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAACTTTTAATAATATCTT+TGG | + | chr5_1:19515029-19515048 | Msa0722300:intron | 10.0% |
| !!! | TAACTTTTAATAATATCTTT+GGG | + | chr5_1:19515030-19515049 | Msa0722300:intron | 10.0% |
| !! | AAAACTTAAGTATTTATATT+GGG | + | chr5_1:19516142-19516161 | Msa0722300:intron | 10.0% |
| !!! | TCTATATTTTTATTATTTGT+TGG | + | chr5_1:19517485-19517504 | Msa0722300:intron | 10.0% |
| !!! | CTATATTTTTATTATTTGTT+GGG | + | chr5_1:19517486-19517505 | Msa0722300:intron | 10.0% |
| !!! | CTTTTTTTTTGTTAAGATAA+TGG | + | chr5_1:19514270-19514289 | Msa0722300:intron | 15.0% |
| !! | AATATACAAAAAGATTTCAA+TGG | - | chr5_1:19514665-19514684 | None:intergenic | 15.0% |
| !! | AAATACTTGACTATAATATT+AGG | + | chr5_1:19514883-19514902 | Msa0722300:intron | 15.0% |
| !! | AATACTTGACTATAATATTA+GGG | + | chr5_1:19514884-19514903 | Msa0722300:intron | 15.0% |
| !! | AAGTTAAAAATAATATTGCA+AGG | - | chr5_1:19515016-19515035 | None:intergenic | 15.0% |
| !! | CAAAACTTAAGTATTTATAT+TGG | + | chr5_1:19516141-19516160 | Msa0722300:intron | 15.0% |
| !!! | AATTAAATGTCATTTTGAAA+TGG | + | chr5_1:19516278-19516297 | Msa0722300:intron | 15.0% |
| !! | TTAACATTTCTTAAATCATA+AGG | - | chr5_1:19516546-19516565 | None:intergenic | 15.0% |
| !! | TTGTTGTATAATTTAAGAAA+TGG | + | chr5_1:19516709-19516728 | Msa0722300:intron | 15.0% |
| !!! | TTTGCTTAATTACTTTTTTT+AGG | + | chr5_1:19517125-19517144 | Msa0722300:intron | 15.0% |
| !! | AATATAATTACATTTCGAAA+AGG | - | chr5_1:19517441-19517460 | None:intergenic | 15.0% |
| !! | ATAATAAAAATATAGAGCAA+TGG | - | chr5_1:19517481-19517500 | None:intergenic | 15.0% |
| !! | CATCTATTTATTTGACTATA+TGG | - | chr5_1:19514616-19514635 | None:intergenic | 20.0% |
| !! | CATATAGTCAAATAAATAGA+TGG | + | chr5_1:19514614-19514633 | Msa0722300:intron | 20.0% |
| !! | AAGCTGTTAATAAATGAATA+TGG | - | chr5_1:19515317-19515336 | None:intergenic | 20.0% |
| !! | ATCAATAATATCCTTATCTA+AGG | + | chr5_1:19515398-19515417 | Msa0722300:intron | 20.0% |
| !! | ATTTAAACAAGTGTTACATT+AGG | + | chr5_1:19516358-19516377 | Msa0722300:intron | 20.0% |
| !! | AAACTATAAGAGAAACTATT+AGG | + | chr5_1:19516588-19516607 | Msa0722300:intron | 20.0% |
| !! | TATAAGTAAATAAGCAACAA+TGG | - | chr5_1:19517151-19517170 | None:intergenic | 20.0% |
| !! | GTAGAAATTATAAAGCTAAT+GGG | - | chr5_1:19517187-19517206 | None:intergenic | 20.0% |
| !! | AGTAGAAATTATAAAGCTAA+TGG | - | chr5_1:19517188-19517207 | None:intergenic | 20.0% |
| !! | TTATATACATATATGCTTCA+GGG | - | chr5_1:19517265-19517284 | None:intergenic | 20.0% |
| !! | TTTATATACATATATGCTTC+AGG | - | chr5_1:19517266-19517285 | None:intergenic | 20.0% |
| !! | TATCATATATAGAGTGAAAA+AGG | + | chr5_1:19517291-19517310 | Msa0722300:intron | 20.0% |
| !! | ATCATATATAGAGTGAAAAA+GGG | + | chr5_1:19517292-19517311 | Msa0722300:intron | 20.0% |
| !!! | AAATGTCAATCATGAATTTT+CGG | + | chr5_1:19517637-19517656 | Msa0722300:intron | 20.0% |
| !! | CATTAAAAGATAAAATGGTT+CGG | - | chr5_1:19517665-19517684 | None:intergenic | 20.0% |
| !! | ACACTCATTAAAAGATAAAA+TGG | - | chr5_1:19517670-19517689 | None:intergenic | 20.0% |
| !!! | ATGTCTTATATGGTATTTTA+TGG | + | chr5_1:19517895-19517914 | Msa0722300:three_prime_UTR | 20.0% |
| ! | ACTAATATATACCTGAATCA+TGG | - | chr5_1:19514129-19514148 | None:intergenic | 25.0% |
| !!! | TAAATGTTTGTTTTCGTCTT+AGG | + | chr5_1:19514188-19514207 | Msa0722300:intron | 25.0% |
| ! | AATACAAATACATATTCAGC+TGG | + | chr5_1:19514321-19514340 | Msa0722300:intron | 25.0% |
| !!! | TGAATGTAGGTTTTTTTTGA+TGG | - | chr5_1:19514519-19514538 | None:intergenic | 25.0% |
| !!! | GCATTTGATAATGATAGAAT+CGG | - | chr5_1:19514570-19514589 | None:intergenic | 25.0% |
| !!! | ACATTGCGTTGATTTAATAA+TGG | - | chr5_1:19514769-19514788 | None:intergenic | 25.0% |
| !! | TATTTAAAGCAAAGAAGTTC+AGG | - | chr5_1:19514868-19514887 | None:intergenic | 25.0% |
| ! | ACTATAATATTAGGGTATGA+TGG | + | chr5_1:19514892-19514911 | Msa0722300:intron | 25.0% |
| ! | AAAAAATCTCAATGATTGCT+TGG | + | chr5_1:19515272-19515291 | Msa0722300:intron | 25.0% |
| ! | ATGTGAACTGGTATAATTAA+CGG | - | chr5_1:19515469-19515488 | None:intergenic | 25.0% |
| ! | TGGACAAAACAAAATTCAAA+GGG | - | chr5_1:19515530-19515549 | None:intergenic | 25.0% |
| ! | TTGGACAAAACAAAATTCAA+AGG | - | chr5_1:19515531-19515550 | None:intergenic | 25.0% |
| !!! | TTGAATTTTGTTTTGTCCAA+TGG | + | chr5_1:19515531-19515550 | Msa0722300:intron | 25.0% |
| !!! | TTTTTAAGCAGTAAATCTAC+TGG | + | chr5_1:19515606-19515625 | Msa0722300:three_prime_UTR | 25.0% |
| !!! | TTTTTAATTGACCTTGTTTG+TGG | + | chr5_1:19515644-19515663 | Msa0722300:intron | 25.0% |
| !! | TGCAAATTTTCTTCCTTTAA+GGG | - | chr5_1:19515691-19515710 | None:intergenic | 25.0% |
| !! | TTGCAAATTTTCTTCCTTTA+AGG | - | chr5_1:19515692-19515711 | None:intergenic | 25.0% |
| ! | AAAGGAAGAAAATTTGCAAA+AGG | + | chr5_1:19515693-19515712 | Msa0722300:intron | 25.0% |
| ! | AAGGAAGAAAATTTGCAAAA+GGG | + | chr5_1:19515694-19515713 | Msa0722300:intron | 25.0% |
| !! | AATATAAACATGTACCCTTT+TGG | + | chr5_1:19515766-19515785 | Msa0722300:intron | 25.0% |
| ! | TTAAGCTATAAACACCAAAA+GGG | - | chr5_1:19515783-19515802 | None:intergenic | 25.0% |
| ! | TTTAAGCTATAAACACCAAA+AGG | - | chr5_1:19515784-19515803 | None:intergenic | 25.0% |
| !!! | TTTTGGTGTTTATAGCTTAA+AGG | + | chr5_1:19515783-19515802 | Msa0722300:intron | 25.0% |
| !!! | ATTTTAATGCTTTGTTGTAC+TGG | + | chr5_1:19515821-19515840 | Msa0722300:intron | 25.0% |
| !! | GTTAATGTTGTTGTTGTAAT+TGG | + | chr5_1:19515934-19515953 | Msa0722300:intron | 25.0% |
| ! | TTATGCATATTGTAAAGTGA+AGG | - | chr5_1:19515965-19515984 | None:intergenic | 25.0% |
| ! | ACTTAAGTATTTATATTGGG+AGG | + | chr5_1:19516145-19516164 | Msa0722300:intron | 25.0% |
| ! | ATCATATGTTGAGAGAAAAT+GGG | + | chr5_1:19516183-19516202 | Msa0722300:intron | 25.0% |
| !!! | ATGTCATTTTGAAATGGATT+TGG | + | chr5_1:19516284-19516303 | Msa0722300:intron | 25.0% |
| ! | AACACTTGTTTAAATCATCA+TGG | - | chr5_1:19516353-19516372 | None:intergenic | 25.0% |
| ! | TTAAGAAATGTTAACACTCT+AGG | + | chr5_1:19516552-19516571 | Msa0722300:intron | 25.0% |
| ! | TAAGAAATGTTAACACTCTA+GGG | + | chr5_1:19516553-19516572 | Msa0722300:intron | 25.0% |
| !! | GTTTCTCTTATAGTTTTTCT+AGG | - | chr5_1:19516584-19516603 | None:intergenic | 25.0% |
| ! | TATAAGAGAAACTATTAGGA+AGG | + | chr5_1:19516592-19516611 | Msa0722300:intron | 25.0% |
| !!! | TGGATTTTGATAAAACACTA+TGG | + | chr5_1:19516638-19516657 | Msa0722300:intron | 25.0% |
| ! | AAATCACTTAGGATAGAAAA+CGG | - | chr5_1:19516774-19516793 | None:intergenic | 25.0% |
| ! | AGATCTAAACAAAATCACTT+AGG | - | chr5_1:19516785-19516804 | None:intergenic | 25.0% |
| ! | CTAAAATAGCCAAAGAAAAT+TGG | + | chr5_1:19516842-19516861 | Msa0722300:intron | 25.0% |
| ! | ATATAATGAAGAGCTACATA+AGG | + | chr5_1:19516995-19517014 | Msa0722300:intron | 25.0% |
| ! | TCATATATAGAGTGAAAAAG+GGG | + | chr5_1:19517293-19517312 | Msa0722300:intron | 25.0% |
| ! | ATATAGAAGAGAATCAACTA+CGG | - | chr5_1:19517390-19517409 | None:intergenic | 25.0% |
| ! | TGTAATTATATTCTTGCACT+TGG | + | chr5_1:19517449-19517468 | Msa0722300:intron | 25.0% |
| ! | ATAGGAGGAAAACAAATATA+AGG | - | chr5_1:19517730-19517749 | None:intergenic | 25.0% |
| ! | GTTACAAAAACAACAATCAA+CGG | - | chr5_1:19517842-19517861 | None:intergenic | 25.0% |
| ! | TTTGTAACTACTACACTATT+TGG | + | chr5_1:19517854-19517873 | Msa0722300:three_prime_UTR | 25.0% |
| ! | TTGAATGTCTATGTCTTATA+TGG | + | chr5_1:19517885-19517904 | Msa0722300:three_prime_UTR | 25.0% |
| TAACTCATTCTCTCTTCATA+TGG | + | chr5_1:19514433-19514452 | Msa0722300:intron | 30.0% | |
| ! | ATACTACTGTTTTCACTTAC+AGG | + | chr5_1:19514484-19514503 | Msa0722300:intron | 30.0% |
| ! | TACTACTGTTTTCACTTACA+GGG | + | chr5_1:19514485-19514504 | Msa0722300:intron | 30.0% |
| GAACATCAAAGAAGAAAAGT+GGG | - | chr5_1:19514594-19514613 | None:intergenic | 30.0% | |
| ATAATATTAGGGTATGATGG+TGG | + | chr5_1:19514895-19514914 | Msa0722300:intron | 30.0% | |
| !! | CTAAGCATTTTGGAAAAATG+TGG | - | chr5_1:19515070-19515089 | None:intergenic | 30.0% |
| ! | TAATTAGTGGCTAAGCATTT+TGG | - | chr5_1:19515080-19515099 | None:intergenic | 30.0% |
| AAAATGCTTAGCCACTAATT+AGG | + | chr5_1:19515079-19515098 | Msa0722300:intron | 30.0% | |
| ! | TTTAAAGTAGTGCTAAGCAT+AGG | - | chr5_1:19515107-19515126 | None:intergenic | 30.0% |
| TATGCTTAGCACTACTTTAA+AGG | + | chr5_1:19515106-19515125 | Msa0722300:intron | 30.0% | |
| ! | TTTAAAGGCACAAATACTAG+AGG | + | chr5_1:19515121-19515140 | Msa0722300:intron | 30.0% |
| ! | TTAAAGGCACAAATACTAGA+GGG | + | chr5_1:19515122-19515141 | Msa0722300:intron | 30.0% |
| TAAAGTTTGAGCCTTAGATA+AGG | - | chr5_1:19515412-19515431 | None:intergenic | 30.0% | |
| CTTTATGTCATTCAATAGAC+TGG | + | chr5_1:19515492-19515511 | Msa0722300:intron | 30.0% | |
| ACAAAATTCAAAGGGTTACT+CGG | - | chr5_1:19515522-19515541 | None:intergenic | 30.0% | |
| AGGAAGAAAATTTGCAAAAG+GGG | + | chr5_1:19515695-19515714 | Msa0722300:intron | 30.0% | |
| ACTCCAGAAATGATAGAAAA+TGG | + | chr5_1:19515742-19515761 | Msa0722300:intron | 30.0% | |
| !!! | TTGCCATTTTCTATCATTTC+TGG | - | chr5_1:19515748-19515767 | None:intergenic | 30.0% |
| CATCATATGTTGAGAGAAAA+TGG | + | chr5_1:19516182-19516201 | Msa0722300:intron | 30.0% | |
| ATGCTGCATAATGTTTATTG+TGG | + | chr5_1:19516407-19516426 | Msa0722300:intron | 30.0% | |
| !! | TTTCTGAAATAACATGTAGC+CGG | + | chr5_1:19516478-19516497 | Msa0722300:intron | 30.0% |
| AAGAAATGTTAACACTCTAG+GGG | + | chr5_1:19516554-19516573 | Msa0722300:intron | 30.0% | |
| !! | GTATTGATTCAACATCACTT+AGG | - | chr5_1:19516744-19516763 | None:intergenic | 30.0% |
| AATAGCCAAAGAAAATTGGA+AGG | + | chr5_1:19516846-19516865 | Msa0722300:intron | 30.0% | |
| ATAGCCAAAGAAAATTGGAA+GGG | + | chr5_1:19516847-19516866 | Msa0722300:intron | 30.0% | |
| ! | TATTCCCTTCCAATTTTCTT+TGG | - | chr5_1:19516854-19516873 | None:intergenic | 30.0% |
| ATTGGAAGGGAATAGAAATA+TGG | + | chr5_1:19516860-19516879 | Msa0722300:intron | 30.0% | |
| GCTACATAAGGAATAATCTT+TGG | + | chr5_1:19517007-19517026 | Msa0722300:intron | 30.0% | |
| GTAATTAAGCAAAAAGAGCA+AGG | - | chr5_1:19517118-19517137 | None:intergenic | 30.0% | |
| ! | TACTATTGCCATTTACTTGA+GGG | + | chr5_1:19517204-19517223 | Msa0722300:intron | 30.0% |
| TTGATTCTCTTCTATATGCA+TGG | + | chr5_1:19517393-19517412 | Msa0722300:intron | 30.0% | |
| TTGCAAAATTCAAAAGGGAA+AGG | - | chr5_1:19517574-19517593 | None:intergenic | 30.0% | |
| !! | GTTTGTTCTAGAGTTGATAA+TGG | + | chr5_1:19517786-19517805 | Msa0722300:three_prime_UTR | 30.0% |
| !! | GATAATGGAAAGATTCATCA+AGG | + | chr5_1:19517801-19517820 | Msa0722300:three_prime_UTR | 30.0% |
| TCAAATTTGCAATGAGTAAC+TGG | - | chr5_1:19517993-19518012 | None:intergenic | 30.0% | |
| TCAACAAAAAGTTCAATCGA+CGG | - | chr5_1:19518035-19518054 | None:intergenic | 30.0% | |
| ! | GATTGAACTTTTTGTTGATG+CGG | + | chr5_1:19518037-19518056 | Msa0722300:three_prime_UTR | 30.0% |
| GCGATCTATTATCTCTTCAT+CGG | - | chr5_1:19514000-19514019 | None:intergenic | 35.0% | |
| GTTCGTAGTTCCATCATATT+TGG | + | chr5_1:19514047-19514066 | Msa0722300:CDS | 35.0% | |
| GTAACAAGCTCCAAATATGA+TGG | - | chr5_1:19514060-19514079 | None:intergenic | 35.0% | |
| GCCTTCGAATGGATAAATAA+AGG | + | chr5_1:19514083-19514102 | Msa0722300:CDS | 35.0% | |
| ! | GCCTTTATTTATCCATTCGA+AGG | - | chr5_1:19514087-19514106 | None:intergenic | 35.0% |
| ! | CGATTTGATTTCCATGATTC+AGG | + | chr5_1:19514115-19514134 | Msa0722300:CDS | 35.0% |
| AGCAAAAGAATCCTTCAGAT+AGG | + | chr5_1:19514344-19514363 | Msa0722300:CDS | 35.0% | |
| AAGAACTTCACATTTCAGAG+AGG | + | chr5_1:19514396-19514415 | Msa0722300:CDS | 35.0% | |
| AAACCTACATTCAACAAACC+CGG | + | chr5_1:19514526-19514545 | Msa0722300:CDS | 35.0% | |
| GGAACATCAAAGAAGAAAAG+TGG | - | chr5_1:19514595-19514614 | None:intergenic | 35.0% | |
| TTTCAATGGTCTCAAGAAAG+AGG | - | chr5_1:19514651-19514670 | None:intergenic | 35.0% | |
| ! | TGGCAAATTCTTCTGCATTT+TGG | + | chr5_1:19514702-19514721 | Msa0722300:intron | 35.0% |
| !! | TTTTCTTCCATGTAGCTTTG+TGG | + | chr5_1:19514820-19514839 | Msa0722300:intron | 35.0% |
| CTTGAATCTGTTGCAAAACA+TGG | - | chr5_1:19514934-19514953 | None:intergenic | 35.0% | |
| CAATGTCATAGCTTTCAATG+TGG | - | chr5_1:19514982-19515001 | None:intergenic | 35.0% | |
| AAGCATAGGTTCCTAATTAG+TGG | - | chr5_1:19515093-19515112 | None:intergenic | 35.0% | |
| TTCTCTTGCAATATTCATGC+TGG | - | chr5_1:19515163-19515182 | None:intergenic | 35.0% | |
| ! | GGTATAATTAACGGATCCAA+TGG | - | chr5_1:19515460-19515479 | None:intergenic | 35.0% |
| GACATAAAGTGAATGTGAAC+TGG | - | chr5_1:19515481-19515500 | None:intergenic | 35.0% | |
| TGCAGAATTTGATCCCTTAA+AGG | + | chr5_1:19515675-19515694 | Msa0722300:intron | 35.0% | |
| ATCAACTCCAGTTAGAAACA+TGG | - | chr5_1:19515868-19515887 | None:intergenic | 35.0% | |
| AAACAACAACAAGACTGACA+AGG | + | chr5_1:19516206-19516225 | Msa0722300:intron | 35.0% | |
| AACAAGACTGACAAGGAATA+TGG | + | chr5_1:19516213-19516232 | Msa0722300:intron | 35.0% | |
| AACACCTCATGAATTGTCAA+AGG | - | chr5_1:19516245-19516264 | None:intergenic | 35.0% | |
| !! | ATGAGGTGTTGATTAGACAT+TGG | + | chr5_1:19516255-19516274 | Msa0722300:intron | 35.0% |
| ! | AAAGCCTTATCCTACTAAGT+GGG | - | chr5_1:19516505-19516524 | None:intergenic | 35.0% |
| TAGAGAGTTAGAGAAAGACA+TGG | + | chr5_1:19516618-19516637 | Msa0722300:intron | 35.0% | |
| GTAGGGTCTTTCTAATCATT+TGG | + | chr5_1:19516930-19516949 | Msa0722300:intron | 35.0% | |
| AAGGAGAAAGACAAACTCTT+GGG | - | chr5_1:19517099-19517118 | None:intergenic | 35.0% | |
| ! | CTACTATTGCCATTTACTTG+AGG | + | chr5_1:19517203-19517222 | Msa0722300:intron | 35.0% |
| !!! | CACAATCTAGCACTAGTTTT+AGG | - | chr5_1:19517514-19517533 | None:intergenic | 35.0% |
| GGGGTTTGCAAAATTCAAAA+GGG | - | chr5_1:19517579-19517598 | None:intergenic | 35.0% | |
| AGGGGTTTGCAAAATTCAAA+AGG | - | chr5_1:19517580-19517599 | None:intergenic | 35.0% | |
| TTCAAAGTTCCCAGCTTAAA+GGG | - | chr5_1:19517599-19517618 | None:intergenic | 35.0% | |
| ATTCAAAGTTCCCAGCTTAA+AGG | - | chr5_1:19517600-19517619 | None:intergenic | 35.0% | |
| TTTCTCTTTACCTGCATCAT+AGG | - | chr5_1:19517748-19517767 | None:intergenic | 35.0% | |
| GGTAGACTTGAATATGCAAA+AGG | + | chr5_1:19517916-19517935 | Msa0722300:three_prime_UTR | 35.0% | |
| GTTTGTTTCATCCGTGTGTT+TGG | - | chr5_1:19513743-19513762 | None:intergenic | 40.0% | |
| GAATCTGTGTGCAATGCTAT+CGG | - | chr5_1:19513886-19513905 | None:intergenic | 40.0% | |
| ATAGCATTGCACACAGATTC+AGG | + | chr5_1:19513886-19513905 | Msa0722300:CDS | 40.0% | |
| CAAGAGAGTGAGATATTTCG+CGG | - | chr5_1:19513932-19513951 | None:intergenic | 40.0% | |
| !! | ATTTACAGACGGAGGTATCT+CGG | - | chr5_1:19513973-19513992 | None:intergenic | 40.0% |
| TCATCGGTGAGATTTACAGA+CGG | - | chr5_1:19513984-19514003 | None:intergenic | 40.0% | |
| GTTAATTACCTGAGCAGCAA+TGG | - | chr5_1:19514238-19514257 | None:intergenic | 40.0% | |
| AAACTACGACACCTATCTGA+AGG | - | chr5_1:19514358-19514377 | None:intergenic | 40.0% | |
| ATTCTCCTTACCTCCATTCA+TGG | + | chr5_1:19514682-19514701 | Msa0722300:intron | 40.0% | |
| ATTTGCCATGAATGGAGGTA+AGG | - | chr5_1:19514690-19514709 | None:intergenic | 40.0% | |
| GAAGAATTTGCCATGAATGG+AGG | - | chr5_1:19514695-19514714 | None:intergenic | 40.0% | |
| GCAGAAGAATTTGCCATGAA+TGG | - | chr5_1:19514698-19514717 | None:intergenic | 40.0% | |
| TCTGTTGCAAAACATGGCTT+AGG | - | chr5_1:19514928-19514947 | None:intergenic | 40.0% | |
| TCATAGCTTTCAATGTGGCA+AGG | - | chr5_1:19514977-19514996 | None:intergenic | 40.0% | |
| GAATATTGCAAGAGAAGACG+AGG | + | chr5_1:19515167-19515186 | Msa0722300:intron | 40.0% | |
| TCTCAATGATTGCTTGGTCA+AGG | + | chr5_1:19515278-19515297 | Msa0722300:intron | 40.0% | |
| ! | TTGCTTCGTGTTTTGTCCAT+TGG | + | chr5_1:19515441-19515460 | Msa0722300:intron | 40.0% |
| ! | TACTGTGCCATGTTTCTAAC+TGG | + | chr5_1:19515858-19515877 | Msa0722300:intron | 40.0% |
| GATGCCTTTGACAATTCATG+AGG | + | chr5_1:19516238-19516257 | Msa0722300:intron | 40.0% | |
| TAATGTTTATTGTGGCCCTC+TGG | + | chr5_1:19516415-19516434 | Msa0722300:intron | 40.0% | |
| ! | GCAATAGAGTTGATTCCAGA+GGG | - | chr5_1:19516433-19516452 | None:intergenic | 40.0% |
| ! | TGCAATAGAGTTGATTCCAG+AGG | - | chr5_1:19516434-19516453 | None:intergenic | 40.0% |
| ! | CAAAGCCTTATCCTACTAAG+TGG | - | chr5_1:19516506-19516525 | None:intergenic | 40.0% |
| CACTTAGTAGGATAAGGCTT+TGG | + | chr5_1:19516504-19516523 | Msa0722300:intron | 40.0% | |
| GGAAGGGAATAGAAATATGG+TGG | + | chr5_1:19516863-19516882 | Msa0722300:intron | 40.0% | |
| CAAGGAGAAAGACAAACTCT+TGG | - | chr5_1:19517100-19517119 | None:intergenic | 40.0% | |
| GTATCTCACCCTCAAGTAAA+TGG | - | chr5_1:19517215-19517234 | None:intergenic | 40.0% | |
| TTACTTGAGGGTGAGATACA+CGG | + | chr5_1:19517216-19517235 | Msa0722300:intron | 40.0% | |
| ! | TTTTGCAAACCCCTTTAAGC+TGG | + | chr5_1:19517586-19517605 | Msa0722300:intron | 40.0% |
| TTTGCAAACCCCTTTAAGCT+GGG | + | chr5_1:19517587-19517606 | Msa0722300:intron | 40.0% | |
| TCAAAGTTCCCAGCTTAAAG+GGG | - | chr5_1:19517598-19517617 | None:intergenic | 40.0% | |
| ! | TTGTTTTCCTCCTATGATGC+AGG | + | chr5_1:19517735-19517754 | Msa0722300:intron | 40.0% |
| ACAACTTAGCAGCATGCAGA+TGG | + | chr5_1:19513761-19513780 | Msa0722300:exon | 45.0% | |
| AGATATCATGTTGCCGCTGT+CGG | - | chr5_1:19513811-19513830 | None:intergenic | 45.0% | |
| AGATATTTCGCGGTTGGGAT+CGG | - | chr5_1:19513922-19513941 | None:intergenic | 45.0% | |
| GAGTGAGATATTTCGCGGTT+GGG | - | chr5_1:19513927-19513946 | None:intergenic | 45.0% | |
| AGAGTGAGATATTTCGCGGT+TGG | - | chr5_1:19513928-19513947 | None:intergenic | 45.0% | |
| AGATCGCTTTGTCATTCTCG+TGG | + | chr5_1:19514013-19514032 | Msa0722300:CDS | 45.0% | |
| ! | ATGATGGAACTACGAACCAC+CGG | - | chr5_1:19514044-19514063 | None:intergenic | 45.0% |
| CTTGTTACGTTGCCTTCGAA+TGG | + | chr5_1:19514072-19514091 | Msa0722300:CDS | 45.0% | |
| !! | AAGCCGGGTTTGTTGAATGT+AGG | - | chr5_1:19514532-19514551 | None:intergenic | 45.0% |
| ! | AAGCTAACCTGTCTAAAGCC+GGG | - | chr5_1:19514547-19514566 | None:intergenic | 45.0% |
| ! | GAAGCTAACCTGTCTAAAGC+CGG | - | chr5_1:19514548-19514567 | None:intergenic | 45.0% |
| AGAAGTTCAGGCCACAATTG+AGG | - | chr5_1:19514856-19514875 | None:intergenic | 45.0% | |
| TTGCTTGGTCAAGGAGAGAA+TGG | + | chr5_1:19515287-19515306 | Msa0722300:intron | 45.0% | |
| CTACGCTAGAAATGTTGCAG+TGG | - | chr5_1:19515343-19515362 | None:intergenic | 45.0% | |
| ! | TGACCTTGTTTGTGGAGTTG+AGG | + | chr5_1:19515652-19515671 | Msa0722300:intron | 45.0% |
| CTTATCCTACTAAGTGGGAC+CGG | - | chr5_1:19516500-19516519 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr5_1:19516687-19516706 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr5_1:19516688-19516707 | None:intergenic | 45.0% |
| TGACCCTGCCACAAGATTAA+GGG | + | chr5_1:19516908-19516927 | Msa0722300:intron | 45.0% | |
| CTACCCTTAATCTTGTGGCA+GGG | - | chr5_1:19516914-19516933 | None:intergenic | 45.0% | |
| CTGCCACAAGATTAAGGGTA+GGG | + | chr5_1:19516913-19516932 | Msa0722300:intron | 45.0% | |
| AGACCCTACCCTTAATCTTG+TGG | - | chr5_1:19516919-19516938 | None:intergenic | 45.0% | |
| GGACATAATGTGAAGACCGA+GGG | - | chr5_1:19517244-19517263 | None:intergenic | 45.0% | |
| ! | GCTAGATTGTGACGCTTTTC+TGG | + | chr5_1:19517523-19517542 | Msa0722300:intron | 45.0% |
| CTCTTTACCTGCATCATAGG+AGG | - | chr5_1:19517745-19517764 | None:intergenic | 45.0% | |
| TGCAAAAGGTCCCTCTAAGT+AGG | + | chr5_1:19517930-19517949 | Msa0722300:three_prime_UTR | 45.0% | |
| GCAAAAGGTCCCTCTAAGTA+GGG | + | chr5_1:19517931-19517950 | Msa0722300:three_prime_UTR | 45.0% | |
| CAAAAGGTCCCTCTAAGTAG+GGG | + | chr5_1:19517932-19517951 | Msa0722300:three_prime_UTR | 45.0% | |
| GATATCATGTTGCCGCTGTC+GGG | - | chr5_1:19513810-19513829 | None:intergenic | 50.0% | |
| GACAGCGGCAACATGATATC+TGG | + | chr5_1:19513810-19513829 | Msa0722300:CDS | 50.0% | |
| TCGGTGAGATTTACAGACGG+AGG | - | chr5_1:19513981-19514000 | None:intergenic | 50.0% | |
| TGTCATTCTCGTGGTCGAAC+CGG | + | chr5_1:19514022-19514041 | Msa0722300:CDS | 50.0% | |
| !! | CAACAAACCCGGCTTTAGAC+AGG | + | chr5_1:19514537-19514556 | Msa0722300:CDS | 50.0% |
| TGGCAGTCCACAAAGCTACA+TGG | - | chr5_1:19514830-19514849 | None:intergenic | 50.0% | |
| GACTGCCAATGCCTCAATTG+TGG | + | chr5_1:19514842-19514861 | Msa0722300:intron | 50.0% | |
| TCAGGCCACAATTGAGGCAT+TGG | - | chr5_1:19514850-19514869 | None:intergenic | 50.0% | |
| GGCACAAATACTAGAGGGAG+AGG | + | chr5_1:19515127-19515146 | Msa0722300:intron | 50.0% | |
| CGCTAGAAATGTTGCAGTGG+AGG | - | chr5_1:19515340-19515359 | None:intergenic | 50.0% | |
| GAAGTAGAGCAGCATCAGGA+AGG | + | chr5_1:19515569-19515588 | Msa0722300:exon | 50.0% | |
| GCACCTCAACTCCACAAACA+AGG | - | chr5_1:19515658-19515677 | None:intergenic | 50.0% | |
| CGGTCCCACTTAGTAGGATA+AGG | + | chr5_1:19516498-19516517 | Msa0722300:intron | 50.0% | |
| ATGTAGTCGACCCCACTTAG+TGG | + | chr5_1:19516674-19516693 | Msa0722300:intron | 50.0% | |
| TGTAGTCGACCCCACTTAGT+GGG | + | chr5_1:19516675-19516694 | Msa0722300:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr5_1:19516689-19516708 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr5_1:19516686-19516705 | Msa0722300:intron | 50.0% | |
| AATCTTGTGGCAGGGTCACT+CGG | - | chr5_1:19516906-19516925 | None:intergenic | 50.0% | |
| GTGACCCTGCCACAAGATTA+AGG | + | chr5_1:19516907-19516926 | Msa0722300:intron | 50.0% | |
| CCTACCCTTAATCTTGTGGC+AGG | - | chr5_1:19516915-19516934 | None:intergenic | 50.0% | |
| CCTGCCACAAGATTAAGGGT+AGG | + | chr5_1:19516912-19516931 | Msa0722300:intron | 50.0% | |
| GGGACATAATGTGAAGACCG+AGG | - | chr5_1:19517245-19517264 | None:intergenic | 50.0% | |
| GCTAGCTACCATTGCTGCTC+AGG | + | chr5_1:19514227-19514246 | Msa0722300:CDS | 55.0% | |
| CCTGCAGTTGGCAGATCCAT+TGG | - | chr5_1:19515550-19515569 | None:intergenic | 55.0% | |
| CCAATGGATCTGCCAACTGC+AGG | + | chr5_1:19515547-19515566 | Msa0722300:intron | 55.0% | |
| GCTGCTCTACTTCCTGCAGT+TGG | - | chr5_1:19515562-19515581 | None:intergenic | 55.0% | |
| GCAGGAAGTAGAGCAGCATC+AGG | + | chr5_1:19515565-19515584 | Msa0722300:intron | 55.0% | |
| TGTAGCCGGTCCCACTTAGT+AGG | + | chr5_1:19516492-19516511 | Msa0722300:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr5_1:19516681-19516700 | Msa0722300:intron | 55.0% | |
| GGTGAGATACACGGTTCCCT+CGG | + | chr5_1:19517225-19517244 | Msa0722300:intron | 55.0% | |
| CGTAGCGACCCCTACTTAGA+GGG | - | chr5_1:19517943-19517962 | None:intergenic | 55.0% | |
| TCGTAGCGACCCCTACTTAG+AGG | - | chr5_1:19517944-19517963 | None:intergenic | 55.0% | |
| !! | AGACGGAGGTATCTCGGCGT+CGG | - | chr5_1:19513967-19513986 | None:intergenic | 60.0% |
| CATTCTCGTGGTCGAACCGG+TGG | + | chr5_1:19514025-19514044 | Msa0722300:CDS | 60.0% | |
| CATGTTGCCGCTGTCGGGTC+CGG | - | chr5_1:19513805-19513824 | None:intergenic | 65.0% | |
| TCGCGGTTGGGATCGGCGTT+GGG | - | chr5_1:19513915-19513934 | None:intergenic | 65.0% | |
| TTCGCGGTTGGGATCGGCGT+TGG | - | chr5_1:19513916-19513935 | None:intergenic | 65.0% | |
| !! | GGAGGTATCTCGGCGTCGGC+GGG | - | chr5_1:19513963-19513982 | None:intergenic | 70.0% |
| !! | CGGAGGTATCTCGGCGTCGG+CGG | - | chr5_1:19513964-19513983 | None:intergenic | 70.0% |
| ! | GCCAACGCCGACGCCGTCGC+CGG | + | chr5_1:19513783-19513802 | Msa0722300:CDS | 80.0% |
| !!! | TCCGGCGACGGCGTCGGCGT+TGG | - | chr5_1:19513787-19513806 | None:intergenic | 80.0% |
| ! | GTCGGGTCCGGCGACGGCGT+CGG | - | chr5_1:19513793-19513812 | None:intergenic | 80.0% |
| ! | GCCGTCGCCGGACCCGACAG+CGG | + | chr5_1:19513795-19513814 | Msa0722300:CDS | 80.0% |
| ! | GCCGCTGTCGGGTCCGGCGA+CGG | - | chr5_1:19513799-19513818 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 19513731 | 19518079 | 19513731 | ID=Msa0722300;Name=Msa0722300 |
| chr5_1 | mRNA | 19513731 | 19518079 | 19513731 | ID=Msa0722300-mRNA-1;Parent=Msa0722300;Name=Msa0722300-mRNA-1;_AED=0.02;_eAED=0.02;_QI=43|1|1|1|0.4|0.33|6|375|179 |
| chr5_1 | exon | 19513731 | 19514136 | 19513731 | ID=Msa0722300-mRNA-1:exon:7352;Parent=Msa0722300-mRNA-1 |
| chr5_1 | exon | 19514210 | 19514248 | 19514210 | ID=Msa0722300-mRNA-1:exon:7353;Parent=Msa0722300-mRNA-1 |
| chr5_1 | exon | 19514340 | 19514417 | 19514340 | ID=Msa0722300-mRNA-1:exon:7354;Parent=Msa0722300-mRNA-1 |
| chr5_1 | exon | 19514506 | 19514558 | 19514506 | ID=Msa0722300-mRNA-1:exon:7355;Parent=Msa0722300-mRNA-1 |
| chr5_1 | exon | 19515569 | 19515627 | 19515569 | ID=Msa0722300-mRNA-1:exon:7356;Parent=Msa0722300-mRNA-1 |
| chr5_1 | exon | 19517757 | 19518079 | 19517757 | ID=Msa0722300-mRNA-1:exon:7357;Parent=Msa0722300-mRNA-1 |
| chr5_1 | five_prime_UTR | 19513731 | 19513773 | 19513731 | ID=Msa0722300-mRNA-1:five_prime_utr;Parent=Msa0722300-mRNA-1 |
| chr5_1 | CDS | 19513774 | 19514136 | 19513774 | ID=Msa0722300-mRNA-1:cds;Parent=Msa0722300-mRNA-1 |
| chr5_1 | CDS | 19514210 | 19514248 | 19514210 | ID=Msa0722300-mRNA-1:cds;Parent=Msa0722300-mRNA-1 |
| chr5_1 | CDS | 19514340 | 19514417 | 19514340 | ID=Msa0722300-mRNA-1:cds;Parent=Msa0722300-mRNA-1 |
| chr5_1 | CDS | 19514506 | 19514558 | 19514506 | ID=Msa0722300-mRNA-1:cds;Parent=Msa0722300-mRNA-1 |
| chr5_1 | CDS | 19515569 | 19515575 | 19515569 | ID=Msa0722300-mRNA-1:cds;Parent=Msa0722300-mRNA-1 |
| chr5_1 | three_prime_UTR | 19515576 | 19515627 | 19515576 | ID=Msa0722300-mRNA-1:three_prime_utr;Parent=Msa0722300-mRNA-1 |
| chr5_1 | three_prime_UTR | 19517757 | 19518079 | 19517757 | ID=Msa0722300-mRNA-1:three_prime_utr;Parent=Msa0722300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
