Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722350 | XP_003613255.1 | 73.810 | 252 | 27 | 3 | 3 | 254 | 1 | 213 | 7.55e-122 | 356 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722350 | G7K1G0 | 73.810 | 252 | 27 | 3 | 3 | 254 | 1 | 213 | 3.61e-122 | 356 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038870 | Msa0722350 | -0.824000 | 1.023126e-53 | -8.615850e-47 |
| Msa0093010 | Msa0722350 | -0.800232 | 1.586958e-48 | -8.615850e-47 |
| Msa0095360 | Msa0722350 | -0.846871 | 1.653640e-59 | -8.615850e-47 |
| Msa0095770 | Msa0722350 | -0.852681 | 3.934663e-61 | -8.615850e-47 |
| Msa0604290 | Msa0722350 | -0.819360 | 1.210016e-52 | -8.615850e-47 |
| Msa0640940 | Msa0722350 | -0.822520 | 2.267303e-53 | -8.615850e-47 |
| Msa0679360 | Msa0722350 | -0.817966 | 2.507079e-52 | -8.615850e-47 |
| Msa0682680 | Msa0722350 | -0.803235 | 3.840268e-49 | -8.615850e-47 |
| Msa0693210 | Msa0722350 | -0.824370 | 8.374403e-54 | -8.615850e-47 |
| Msa0694990 | Msa0722350 | -0.807030 | 6.168378e-50 | -8.615850e-47 |
| Msa0722300 | Msa0722350 | 0.978481 | 6.471537e-146 | -8.615850e-47 |
| Msa0722350 | Msa0743530 | -0.824990 | 5.983365e-54 | -8.615850e-47 |
| Msa0722350 | Msa0746170 | -0.834721 | 2.543768e-56 | -8.615850e-47 |
| Msa0722350 | Msa0746210 | -0.835603 | 1.524189e-56 | -8.615850e-47 |
| Msa0722350 | Msa0822170 | -0.836961 | 6.884844e-57 | -8.615850e-47 |
| Msa0722350 | Msa0828590 | -0.823604 | 1.266474e-53 | -8.615850e-47 |
| Msa0722350 | Msa0829220 | -0.812511 | 4.086724e-51 | -8.615850e-47 |
| Msa0722350 | Msa0838370 | -0.820299 | 7.379764e-53 | -8.615850e-47 |
| Msa0722350 | Msa0844280 | -0.811998 | 5.287507e-51 | -8.615850e-47 |
| Msa0722350 | Msa0858440 | -0.813602 | 2.356037e-51 | -8.615850e-47 |
| Msa0722350 | Msa0872250 | -0.803753 | 2.999522e-49 | -8.615850e-47 |
| Msa0722350 | Msa0944200 | -0.842109 | 3.159557e-58 | -8.615850e-47 |
| Msa0722350 | Msa0958000 | -0.801887 | 7.281801e-49 | -8.615850e-47 |
| Msa0722350 | Msa0980540 | -0.819490 | 1.130356e-52 | -8.615850e-47 |
| Msa0722350 | Msa1037520 | -0.804910 | 1.721645e-49 | -8.615850e-47 |
| Msa0722350 | Msa1096620 | -0.804629 | 1.970426e-49 | -8.615850e-47 |
| Msa0722350 | Msa1130400 | -0.820503 | 6.625860e-53 | -8.615850e-47 |
| Msa0722350 | Msa1154490 | -0.806022 | 1.006356e-49 | -8.615850e-47 |
| Msa0722350 | Msa1178580 | -0.828695 | 7.792669e-55 | -8.615850e-47 |
| Msa0722350 | Msa1188560 | -0.816822 | 4.535798e-52 | -8.615850e-47 |
| Msa0722350 | Msa1192140 | 0.805508 | 1.290291e-49 | -8.615850e-47 |
| Msa0722350 | Msa1205590 | -0.809933 | 1.481154e-50 | -8.615850e-47 |
| Msa0722350 | Msa1211350 | -0.824618 | 7.320827e-54 | -8.615850e-47 |
| Msa0722350 | Msa1233850 | -0.839233 | 1.791227e-57 | -8.615850e-47 |
| Msa0722350 | Msa1276150 | -0.829912 | 3.947895e-55 | -8.615850e-47 |
| Msa0722350 | Msa1329800 | -0.800469 | 1.420217e-48 | -8.615850e-47 |
| Msa0722350 | Msa1340480 | -0.811580 | 6.519902e-51 | -8.615850e-47 |
| Msa0722350 | Msa1370590 | -0.814473 | 1.513268e-51 | -8.615850e-47 |
| Msa0722350 | Msa1374390 | 0.981470 | 1.147932e-152 | -8.615850e-47 |
| Msa0722350 | Msa1384100 | -0.813974 | 1.950136e-51 | -8.615850e-47 |
| Msa0722350 | Msa1444120 | -0.814287 | 1.663878e-51 | -8.615850e-47 |
| Msa0722350 | Msa1446080 | -0.814282 | 1.668148e-51 | -8.615850e-47 |
| Msa0183870 | Msa0722350 | -0.818369 | 2.032322e-52 | -8.615850e-47 |
| Msa0190590 | Msa0722350 | -0.806925 | 6.490593e-50 | -8.615850e-47 |
| Msa0382370 | Msa0722350 | -0.809146 | 2.185977e-50 | -8.615850e-47 |
| Msa0385500 | Msa0722350 | -0.832504 | 9.105782e-56 | -8.615850e-47 |
| Msa0432500 | Msa0722350 | -0.800385 | 1.477555e-48 | -8.615850e-47 |
| Msa0462600 | Msa0722350 | -0.841261 | 5.291142e-58 | -8.615850e-47 |
| Msa0482040 | Msa0722350 | -0.802596 | 5.203511e-49 | -8.615850e-47 |
| Msa0244980 | Msa0722350 | -0.817108 | 3.912474e-52 | -8.615850e-47 |
| Msa0245580 | Msa0722350 | -0.831082 | 2.042386e-55 | -8.615850e-47 |
| Msa0257490 | Msa0722350 | -0.825247 | 5.202793e-54 | -8.615850e-47 |
| Msa0281530 | Msa0722350 | -0.811730 | 6.048720e-51 | -8.615850e-47 |
| Msa0296790 | Msa0722350 | -0.840467 | 8.544109e-58 | -8.615850e-47 |
| Msa0320590 | Msa0722350 | -0.810066 | 1.386284e-50 | -8.615850e-47 |
| Msa0358860 | Msa0722350 | -0.802337 | 5.885253e-49 | -8.615850e-47 |
| Msa0363640 | Msa0722350 | -0.819681 | 1.022176e-52 | -8.615850e-47 |
| Msa0482940 | Msa0722350 | -0.811993 | 5.300889e-51 | -8.615850e-47 |
| Msa0491000 | Msa0722350 | -0.810083 | 1.375070e-50 | -8.615850e-47 |
| Msa0496450 | Msa0722350 | -0.801929 | 7.139076e-49 | -8.615850e-47 |
| Msa0542560 | Msa0722350 | -0.844855 | 5.837150e-59 | -8.615850e-47 |
| Msa0600080 | Msa0722350 | -0.806714 | 7.191645e-50 | -8.615850e-47 |
| Msa0600450 | Msa0722350 | -0.814991 | 1.162097e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0722350 | MtrunA17_Chr5g0413731 | 73.810 | 252 | 27 | 3 | 3 | 254 | 1 | 213 | 6.94e-126 | 356 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 70 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCAAATTCTTCTGCATTT+TGG | 0.153242 | 5_1:+19600798 | Msa0722350:CDS |
| CGATTTGATTTCCATGATTC+AGG | 0.201084 | 5_1:+19600211 | Msa0722350:CDS |
| GTTCGTAGTTCCATCATATT+TGG | 0.285239 | 5_1:+19600143 | Msa0722350:CDS |
| TTTGTAACTACTACACTATT+TGG | 0.299910 | 5_1:+19603952 | Msa0722350:three_prime_UTR |
| TCAAATTTGCAATGAGTAAC+TGG | 0.314460 | 5_1:-19604088 | None:intergenic |
| TTGAATGTCTATGTCTTATA+TGG | 0.317029 | 5_1:+19603983 | Msa0722350:three_prime_UTR |
| ATAGCATTGCACACAGATTC+AGG | 0.336433 | 5_1:+19599982 | Msa0722350:CDS |
| GTTTGTTCTAGAGTTGATAA+TGG | 0.352413 | 5_1:+19603884 | Msa0722350:CDS |
| ATTCTCCTTACCTCCATTCA+TGG | 0.360865 | 5_1:+19600778 | Msa0722350:CDS |
| TTCGCGGTTGGGATCGGCGT+TGG | 0.364788 | 5_1:-19600009 | None:intergenic |
| TCGCGGTTGGGATCGGCGTT+GGG | 0.387791 | 5_1:-19600008 | None:intergenic |
| GCCTTCGAATGGATAAATAA+AGG | 0.391458 | 5_1:+19600179 | Msa0722350:CDS |
| TCGTAGCGACCCCTACTTAG+AGG | 0.405043 | 5_1:-19604039 | None:intergenic |
| GATATCATGTTGCCGCTGTC+GGG | 0.408998 | 5_1:-19599903 | None:intergenic |
| GCTAGCTACCATTGCTGCTC+AGG | 0.421988 | 5_1:+19600323 | Msa0722350:CDS |
| GCCGCTGTCGGGTCCGGCGA+CGG | 0.423022 | 5_1:-19599892 | None:intergenic |
| GACAGCGGCAACATGATATC+TGG | 0.426604 | 5_1:+19599906 | Msa0722350:CDS |
| GTTTGTTTCATCCGTGTGTT+TGG | 0.428901 | 5_1:-19599836 | None:intergenic |
| TCCGGCGACGGCGTCGGCGT+TGG | 0.428911 | 5_1:-19599880 | None:intergenic |
| GAGTGAGATATTTCGCGGTT+GGG | 0.437230 | 5_1:-19600020 | None:intergenic |
| TGTCATTCTCGTGGTCGAAC+CGG | 0.440793 | 5_1:+19600118 | Msa0722350:CDS |
| CATGTTGCCGCTGTCGGGTC+CGG | 0.441152 | 5_1:-19599898 | None:intergenic |
| AGATATCATGTTGCCGCTGT+CGG | 0.447616 | 5_1:-19599904 | None:intergenic |
| GCAGAAGAATTTGCCATGAA+TGG | 0.455906 | 5_1:-19600791 | None:intergenic |
| AGATATTTCGCGGTTGGGAT+CGG | 0.464805 | 5_1:-19600015 | None:intergenic |
| GTCGGGTCCGGCGACGGCGT+CGG | 0.472172 | 5_1:-19599886 | None:intergenic |
| ACTAATATATACCTGAATCA+TGG | 0.486498 | 5_1:-19600222 | None:intergenic |
| CTTGTTACGTTGCCTTCGAA+TGG | 0.487361 | 5_1:+19600168 | Msa0722350:CDS |
| CAACAAACCCGGCTTTAGAC+AGG | 0.490308 | 5_1:+19600633 | Msa0722350:CDS |
| ATTTACAGACGGAGGTATCT+CGG | 0.495301 | 5_1:-19600066 | None:intergenic |
| GCAGGAAGTAGAGCAGCATC+AGG | 0.498588 | 5_1:+19601661 | Msa0722350:intron |
| GCCAACGCCGACGCCGTCGC+CGG | 0.501229 | 5_1:+19599879 | Msa0722350:CDS |
| GGTAGACTTGAATATGCAAA+AGG | 0.505162 | 5_1:+19604014 | Msa0722350:three_prime_UTR |
| GCAAAAGGTCCCTCTAAGTA+GGG | 0.505245 | 5_1:+19604029 | Msa0722350:three_prime_UTR |
| CGGACTTAATTTGATGATGT+CGG | 0.508222 | 5_1:+19604155 | Msa0722350:three_prime_UTR |
| AGAGTGAGATATTTCGCGGT+TGG | 0.508463 | 5_1:-19600021 | None:intergenic |
| GCCTTTATTTATCCATTCGA+AGG | 0.510518 | 5_1:-19600180 | None:intergenic |
| GGAGGTATCTCGGCGTCGGC+GGG | 0.510674 | 5_1:-19600056 | None:intergenic |
| CAAGAGAGTGAGATATTTCG+CGG | 0.512236 | 5_1:-19600025 | None:intergenic |
| GGTTTAAGCAGTAAATCTAC+TGG | 0.514267 | 5_1:+19601704 | Msa0722350:CDS |
| GTAACAAGCTCCAAATATGA+TGG | 0.521027 | 5_1:-19600153 | None:intergenic |
| GAAGGCACATCTAGAGCTGT+TGG | 0.522636 | 5_1:+19601683 | Msa0722350:CDS |
| ATTTGCCATGAATGGAGGTA+AGG | 0.527921 | 5_1:-19600783 | None:intergenic |
| GAAGCTAACCTGTCTAAAGC+CGG | 0.528336 | 5_1:-19600641 | None:intergenic |
| TTTCAATGGTCTCAAGAAAG+AGG | 0.529772 | 5_1:-19600744 | None:intergenic |
| CATTCTCGTGGTCGAACCGG+TGG | 0.530107 | 5_1:+19600121 | Msa0722350:CDS |
| AAGCCGGGTTTGTTGAATGT+AGG | 0.534427 | 5_1:-19600625 | None:intergenic |
| GATAATGGAAAGATTCATCA+AGG | 0.534613 | 5_1:+19603899 | Msa0722350:CDS |
| GTTAATTACCTGAGCAGCAA+TGG | 0.540291 | 5_1:-19600331 | None:intergenic |
| TGCAAAAGGTCCCTCTAAGT+AGG | 0.544935 | 5_1:+19604028 | Msa0722350:three_prime_UTR |
| CGGAGGTATCTCGGCGTCGG+CGG | 0.556350 | 5_1:-19600057 | None:intergenic |
| GAATCTGTGTGCAATGCTAT+CGG | 0.559094 | 5_1:-19599979 | None:intergenic |
| GCGATCTATTATCTCTTCAT+CGG | 0.560568 | 5_1:-19600093 | None:intergenic |
| AAGCTAACCTGTCTAAAGCC+GGG | 0.564832 | 5_1:-19600640 | None:intergenic |
| AGCAAAAGAATCCTTCAGAT+AGG | 0.572865 | 5_1:+19600440 | Msa0722350:CDS |
| CGTAGCGACCCCTACTTAGA+GGG | 0.593498 | 5_1:-19604038 | None:intergenic |
| AGACGGAGGTATCTCGGCGT+CGG | 0.608196 | 5_1:-19600060 | None:intergenic |
| AGATCGCTTTGTCATTCTCG+TGG | 0.608201 | 5_1:+19600109 | Msa0722350:CDS |
| GCCGTCGCCGGACCCGACAG+CGG | 0.608672 | 5_1:+19599891 | Msa0722350:CDS |
| AAACTACGACACCTATCTGA+AGG | 0.613911 | 5_1:-19600451 | None:intergenic |
| GAAGTAGAGCAGCATCAGGA+AGG | 0.616775 | 5_1:+19601665 | Msa0722350:CDS |
| ATGATGGAACTACGAACCAC+CGG | 0.618705 | 5_1:-19600137 | None:intergenic |
| GAAGAATTTGCCATGAATGG+AGG | 0.629992 | 5_1:-19600788 | None:intergenic |
| AAACCTACATTCAACAAACC+CGG | 0.635609 | 5_1:+19600622 | Msa0722350:CDS |
| ACAACTTAGCAGCATGCAGA+TGG | 0.640567 | 5_1:+19599857 | Msa0722350:exon |
| TCAATAACAAACCAAACACA+CGG | 0.678099 | 5_1:+19599825 | None:intergenic |
| CAAAAGGTCCCTCTAAGTAG+GGG | 0.679241 | 5_1:+19604030 | Msa0722350:three_prime_UTR |
| AAGAACTTCACATTTCAGAG+AGG | 0.691319 | 5_1:+19600492 | Msa0722350:CDS |
| TCATCGGTGAGATTTACAGA+CGG | 0.695451 | 5_1:-19600077 | None:intergenic |
| TCGGTGAGATTTACAGACGG+AGG | 0.702745 | 5_1:-19600074 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAACTTTTAATAATATCTT+TGG | + | chr5_1:19601125-19601144 | Msa0722350:intron | 10.0% |
| !!! | TAACTTTTAATAATATCTTT+GGG | + | chr5_1:19601126-19601145 | Msa0722350:intron | 10.0% |
| !! | AAAACTTAAGTATTTATATT+GGG | + | chr5_1:19602240-19602259 | Msa0722350:intron | 10.0% |
| !!! | TCTATATTTTTATTATTTGT+TGG | + | chr5_1:19603583-19603602 | Msa0722350:intron | 10.0% |
| !!! | CTATATTTTTATTATTTGTT+GGG | + | chr5_1:19603584-19603603 | Msa0722350:intron | 10.0% |
| !!! | CTTTTTTTTTGTTAAGATAA+TGG | + | chr5_1:19600366-19600385 | Msa0722350:intron | 15.0% |
| !! | AATATACAAAAAGATTTCAA+TGG | - | chr5_1:19600761-19600780 | None:intergenic | 15.0% |
| !! | AAATACTTGACTATAATATT+AGG | + | chr5_1:19600979-19600998 | Msa0722350:intron | 15.0% |
| !! | AATACTTGACTATAATATTA+GGG | + | chr5_1:19600980-19600999 | Msa0722350:intron | 15.0% |
| !! | AAGTTAAAAATAATATTGCA+AGG | - | chr5_1:19601112-19601131 | None:intergenic | 15.0% |
| !! | CAAAACTTAAGTATTTATAT+TGG | + | chr5_1:19602239-19602258 | Msa0722350:intron | 15.0% |
| !!! | AATTAAATGTCATTTTGAAA+TGG | + | chr5_1:19602376-19602395 | Msa0722350:intron | 15.0% |
| !! | TTAACATTTCTTAAATCATA+AGG | - | chr5_1:19602644-19602663 | None:intergenic | 15.0% |
| !! | TTGTTGTATAATTTAAGAAA+TGG | + | chr5_1:19602807-19602826 | Msa0722350:intron | 15.0% |
| !!! | TTTGCTTAATTACTTTTTTT+AGG | + | chr5_1:19603223-19603242 | Msa0722350:intron | 15.0% |
| !! | AATATAATTACATTTCGAAA+AGG | - | chr5_1:19603539-19603558 | None:intergenic | 15.0% |
| !! | ATAATAAAAATATAGAGCAA+TGG | - | chr5_1:19603579-19603598 | None:intergenic | 15.0% |
| !! | CATCTATTTATTTGACTATA+TGG | - | chr5_1:19600712-19600731 | None:intergenic | 20.0% |
| !! | CATATAGTCAAATAAATAGA+TGG | + | chr5_1:19600710-19600729 | Msa0722350:intron | 20.0% |
| !! | AAGCTGTTAATAAATGAATA+TGG | - | chr5_1:19601413-19601432 | None:intergenic | 20.0% |
| !! | ATCAATAATATCCTTATCTA+AGG | + | chr5_1:19601494-19601513 | Msa0722350:intron | 20.0% |
| !! | ATTTAAACAAGTGTTACATT+AGG | + | chr5_1:19602456-19602475 | Msa0722350:intron | 20.0% |
| !! | AAACTATAAGAGAAACTATT+AGG | + | chr5_1:19602686-19602705 | Msa0722350:intron | 20.0% |
| !! | TATAAGTAAATAAGCAACAA+TGG | - | chr5_1:19603249-19603268 | None:intergenic | 20.0% |
| !! | GTAGAAATTATAAAGCTAAT+GGG | - | chr5_1:19603285-19603304 | None:intergenic | 20.0% |
| !! | AGTAGAAATTATAAAGCTAA+TGG | - | chr5_1:19603286-19603305 | None:intergenic | 20.0% |
| !! | TTATATACATATATGCTTCA+GGG | - | chr5_1:19603363-19603382 | None:intergenic | 20.0% |
| !! | TTTATATACATATATGCTTC+AGG | - | chr5_1:19603364-19603383 | None:intergenic | 20.0% |
| !! | TATCATATATAGAGTGAAAA+AGG | + | chr5_1:19603389-19603408 | Msa0722350:intron | 20.0% |
| !! | ATCATATATAGAGTGAAAAA+GGG | + | chr5_1:19603390-19603409 | Msa0722350:intron | 20.0% |
| !!! | AAATGTCAATCATGAATTTT+CGG | + | chr5_1:19603735-19603754 | Msa0722350:intron | 20.0% |
| !! | CATTAAAAGATAAAATGGTT+CGG | - | chr5_1:19603763-19603782 | None:intergenic | 20.0% |
| !! | ACACTCATTAAAAGATAAAA+TGG | - | chr5_1:19603768-19603787 | None:intergenic | 20.0% |
| !!! | ATGTCTTATATGGTATTTTA+TGG | + | chr5_1:19603993-19604012 | Msa0722350:three_prime_UTR | 20.0% |
| ! | ACTAATATATACCTGAATCA+TGG | - | chr5_1:19600225-19600244 | None:intergenic | 25.0% |
| !!! | TAAATGTTTGTTTTCGTCTT+AGG | + | chr5_1:19600284-19600303 | Msa0722350:intron | 25.0% |
| ! | AATACAAATACATATTCAGC+TGG | + | chr5_1:19600417-19600436 | Msa0722350:intron | 25.0% |
| !!! | TGAATGTAGGTTTTTTTTGA+TGG | - | chr5_1:19600615-19600634 | None:intergenic | 25.0% |
| !!! | GCATTTGATAATGATAGAAT+CGG | - | chr5_1:19600666-19600685 | None:intergenic | 25.0% |
| !!! | ACATTGCGTTGATTTAATAA+TGG | - | chr5_1:19600865-19600884 | None:intergenic | 25.0% |
| !! | TATTTAAAGCAAAGAAGTTC+AGG | - | chr5_1:19600964-19600983 | None:intergenic | 25.0% |
| ! | ACTATAATATTAGGGTATGA+TGG | + | chr5_1:19600988-19601007 | Msa0722350:intron | 25.0% |
| ! | AAAAAATCTCAATGATTGCT+TGG | + | chr5_1:19601368-19601387 | Msa0722350:intron | 25.0% |
| ! | ATGTGAACTGGTATAATTAA+CGG | - | chr5_1:19601565-19601584 | None:intergenic | 25.0% |
| ! | TGGACAAAACAAAATTCAAA+GGG | - | chr5_1:19601626-19601645 | None:intergenic | 25.0% |
| ! | TTGGACAAAACAAAATTCAA+AGG | - | chr5_1:19601627-19601646 | None:intergenic | 25.0% |
| !!! | TTGAATTTTGTTTTGTCCAA+TGG | + | chr5_1:19601627-19601646 | Msa0722350:intron | 25.0% |
| !!! | TTTTTAATTGACCTTGTTTG+TGG | + | chr5_1:19601742-19601761 | Msa0722350:intron | 25.0% |
| !! | TGCAAATTTTCTTCCTTTAA+GGG | - | chr5_1:19601789-19601808 | None:intergenic | 25.0% |
| !! | TTGCAAATTTTCTTCCTTTA+AGG | - | chr5_1:19601790-19601809 | None:intergenic | 25.0% |
| ! | AAAGGAAGAAAATTTGCAAA+AGG | + | chr5_1:19601791-19601810 | Msa0722350:intron | 25.0% |
| ! | AAGGAAGAAAATTTGCAAAA+GGG | + | chr5_1:19601792-19601811 | Msa0722350:intron | 25.0% |
| !! | AATATAAACATGTACCCTTT+TGG | + | chr5_1:19601864-19601883 | Msa0722350:intron | 25.0% |
| ! | TTAAGCTATAAACACCAAAA+GGG | - | chr5_1:19601881-19601900 | None:intergenic | 25.0% |
| ! | TTTAAGCTATAAACACCAAA+AGG | - | chr5_1:19601882-19601901 | None:intergenic | 25.0% |
| !!! | TTTTGGTGTTTATAGCTTAA+AGG | + | chr5_1:19601881-19601900 | Msa0722350:intron | 25.0% |
| !!! | ATTTTAATGCTTTGTTGTAC+TGG | + | chr5_1:19601919-19601938 | Msa0722350:intron | 25.0% |
| !! | GTTAATGTTGTTGTTGTAAT+TGG | + | chr5_1:19602032-19602051 | Msa0722350:intron | 25.0% |
| ! | TTATGCATATTGTAAAGTGA+AGG | - | chr5_1:19602063-19602082 | None:intergenic | 25.0% |
| ! | ACTTAAGTATTTATATTGGG+AGG | + | chr5_1:19602243-19602262 | Msa0722350:intron | 25.0% |
| ! | ATCATATGTTGAGAGAAAAT+GGG | + | chr5_1:19602281-19602300 | Msa0722350:intron | 25.0% |
| !!! | ATGTCATTTTGAAATGGATT+TGG | + | chr5_1:19602382-19602401 | Msa0722350:intron | 25.0% |
| ! | AACACTTGTTTAAATCATCA+TGG | - | chr5_1:19602451-19602470 | None:intergenic | 25.0% |
| ! | TTAAGAAATGTTAACACTCT+AGG | + | chr5_1:19602650-19602669 | Msa0722350:intron | 25.0% |
| ! | TAAGAAATGTTAACACTCTA+GGG | + | chr5_1:19602651-19602670 | Msa0722350:intron | 25.0% |
| !! | GTTTCTCTTATAGTTTTTCT+AGG | - | chr5_1:19602682-19602701 | None:intergenic | 25.0% |
| ! | TATAAGAGAAACTATTAGGA+AGG | + | chr5_1:19602690-19602709 | Msa0722350:intron | 25.0% |
| !!! | TGGATTTTGATAAAACACTA+TGG | + | chr5_1:19602736-19602755 | Msa0722350:intron | 25.0% |
| ! | AAATCACTTAGGATAGAAAA+CGG | - | chr5_1:19602872-19602891 | None:intergenic | 25.0% |
| ! | AGATCTAAACAAAATCACTT+AGG | - | chr5_1:19602883-19602902 | None:intergenic | 25.0% |
| ! | CTAAAATAGCCAAAGAAAAT+TGG | + | chr5_1:19602940-19602959 | Msa0722350:intron | 25.0% |
| ! | ATATAATGAAGAGCTACATA+AGG | + | chr5_1:19603093-19603112 | Msa0722350:intron | 25.0% |
| ! | TCATATATAGAGTGAAAAAG+GGG | + | chr5_1:19603391-19603410 | Msa0722350:intron | 25.0% |
| ! | ATATAGAAGAGAATCAACTA+CGG | - | chr5_1:19603488-19603507 | None:intergenic | 25.0% |
| ! | TGTAATTATATTCTTGCACT+TGG | + | chr5_1:19603547-19603566 | Msa0722350:intron | 25.0% |
| ! | ATAGGAGGAAAACAAATATA+AGG | - | chr5_1:19603828-19603847 | None:intergenic | 25.0% |
| ! | GTTACAAAAACAACAATCAA+CGG | - | chr5_1:19603940-19603959 | None:intergenic | 25.0% |
| ! | TTTGTAACTACTACACTATT+TGG | + | chr5_1:19603952-19603971 | Msa0722350:three_prime_UTR | 25.0% |
| ! | TTGAATGTCTATGTCTTATA+TGG | + | chr5_1:19603983-19604002 | Msa0722350:three_prime_UTR | 25.0% |
| TAACTCATTCTCTCTTCATA+TGG | + | chr5_1:19600529-19600548 | Msa0722350:intron | 30.0% | |
| ! | ATACTACTGTTTTCACTTAC+AGG | + | chr5_1:19600580-19600599 | Msa0722350:intron | 30.0% |
| ! | TACTACTGTTTTCACTTACA+GGG | + | chr5_1:19600581-19600600 | Msa0722350:intron | 30.0% |
| GAACATCAAAGAAGAAAAGT+GGG | - | chr5_1:19600690-19600709 | None:intergenic | 30.0% | |
| ATAATATTAGGGTATGATGG+TGG | + | chr5_1:19600991-19601010 | Msa0722350:intron | 30.0% | |
| !! | CTAAGCATTTTGGAAAAATG+TGG | - | chr5_1:19601166-19601185 | None:intergenic | 30.0% |
| ! | TAATTAGTGGCTAAGCATTT+TGG | - | chr5_1:19601176-19601195 | None:intergenic | 30.0% |
| AAAATGCTTAGCCACTAATT+AGG | + | chr5_1:19601175-19601194 | Msa0722350:intron | 30.0% | |
| ! | TTTAAAGTAGTGCTAAGCAT+AGG | - | chr5_1:19601203-19601222 | None:intergenic | 30.0% |
| TATGCTTAGCACTACTTTAA+AGG | + | chr5_1:19601202-19601221 | Msa0722350:intron | 30.0% | |
| ! | TTTAAAGGCACAAATACTAG+AGG | + | chr5_1:19601217-19601236 | Msa0722350:intron | 30.0% |
| ! | TTAAAGGCACAAATACTAGA+GGG | + | chr5_1:19601218-19601237 | Msa0722350:intron | 30.0% |
| TAAAGTTTGAGCCTTAGATA+AGG | - | chr5_1:19601508-19601527 | None:intergenic | 30.0% | |
| CTTTATGTCATTCAATAGAC+TGG | + | chr5_1:19601588-19601607 | Msa0722350:intron | 30.0% | |
| ACAAAATTCAAAGGGTTACT+CGG | - | chr5_1:19601618-19601637 | None:intergenic | 30.0% | |
| AGGAAGAAAATTTGCAAAAG+GGG | + | chr5_1:19601793-19601812 | Msa0722350:intron | 30.0% | |
| ACTCCAGAAATGATAGAAAA+TGG | + | chr5_1:19601840-19601859 | Msa0722350:intron | 30.0% | |
| !!! | TTGCCATTTTCTATCATTTC+TGG | - | chr5_1:19601846-19601865 | None:intergenic | 30.0% |
| CATCATATGTTGAGAGAAAA+TGG | + | chr5_1:19602280-19602299 | Msa0722350:intron | 30.0% | |
| ATGCTGCATAATGTTTATTG+TGG | + | chr5_1:19602505-19602524 | Msa0722350:intron | 30.0% | |
| !! | TTTCTGAAATAACATGTAGC+CGG | + | chr5_1:19602576-19602595 | Msa0722350:intron | 30.0% |
| AAGAAATGTTAACACTCTAG+GGG | + | chr5_1:19602652-19602671 | Msa0722350:intron | 30.0% | |
| !! | GTATTGATTCAACATCACTT+AGG | - | chr5_1:19602842-19602861 | None:intergenic | 30.0% |
| AATAGCCAAAGAAAATTGGA+AGG | + | chr5_1:19602944-19602963 | Msa0722350:intron | 30.0% | |
| ATAGCCAAAGAAAATTGGAA+GGG | + | chr5_1:19602945-19602964 | Msa0722350:intron | 30.0% | |
| ! | TATTCCCTTCCAATTTTCTT+TGG | - | chr5_1:19602952-19602971 | None:intergenic | 30.0% |
| ATTGGAAGGGAATAGAAATA+TGG | + | chr5_1:19602958-19602977 | Msa0722350:intron | 30.0% | |
| GCTACATAAGGAATAATCTT+TGG | + | chr5_1:19603105-19603124 | Msa0722350:intron | 30.0% | |
| GTAATTAAGCAAAAAGAGCA+AGG | - | chr5_1:19603216-19603235 | None:intergenic | 30.0% | |
| ! | TACTATTGCCATTTACTTGA+GGG | + | chr5_1:19603302-19603321 | Msa0722350:intron | 30.0% |
| TTGATTCTCTTCTATATGCA+TGG | + | chr5_1:19603491-19603510 | Msa0722350:intron | 30.0% | |
| TTGCAAAATTCAAAAGGGAA+AGG | - | chr5_1:19603672-19603691 | None:intergenic | 30.0% | |
| !! | GTTTGTTCTAGAGTTGATAA+TGG | + | chr5_1:19603884-19603903 | Msa0722350:CDS | 30.0% |
| !! | GATAATGGAAAGATTCATCA+AGG | + | chr5_1:19603899-19603918 | Msa0722350:CDS | 30.0% |
| TCAAATTTGCAATGAGTAAC+TGG | - | chr5_1:19604091-19604110 | None:intergenic | 30.0% | |
| TCAACAAAAAGTTCAATCGA+CGG | - | chr5_1:19604133-19604152 | None:intergenic | 30.0% | |
| ! | GATTGAACTTTTTGTTGATG+CGG | + | chr5_1:19604135-19604154 | Msa0722350:three_prime_UTR | 30.0% |
| GCGATCTATTATCTCTTCAT+CGG | - | chr5_1:19600096-19600115 | None:intergenic | 35.0% | |
| GTTCGTAGTTCCATCATATT+TGG | + | chr5_1:19600143-19600162 | Msa0722350:CDS | 35.0% | |
| GTAACAAGCTCCAAATATGA+TGG | - | chr5_1:19600156-19600175 | None:intergenic | 35.0% | |
| GCCTTCGAATGGATAAATAA+AGG | + | chr5_1:19600179-19600198 | Msa0722350:CDS | 35.0% | |
| ! | GCCTTTATTTATCCATTCGA+AGG | - | chr5_1:19600183-19600202 | None:intergenic | 35.0% |
| ! | CGATTTGATTTCCATGATTC+AGG | + | chr5_1:19600211-19600230 | Msa0722350:CDS | 35.0% |
| AGCAAAAGAATCCTTCAGAT+AGG | + | chr5_1:19600440-19600459 | Msa0722350:CDS | 35.0% | |
| AAGAACTTCACATTTCAGAG+AGG | + | chr5_1:19600492-19600511 | Msa0722350:CDS | 35.0% | |
| AAACCTACATTCAACAAACC+CGG | + | chr5_1:19600622-19600641 | Msa0722350:CDS | 35.0% | |
| GGAACATCAAAGAAGAAAAG+TGG | - | chr5_1:19600691-19600710 | None:intergenic | 35.0% | |
| TTTCAATGGTCTCAAGAAAG+AGG | - | chr5_1:19600747-19600766 | None:intergenic | 35.0% | |
| ! | TGGCAAATTCTTCTGCATTT+TGG | + | chr5_1:19600798-19600817 | Msa0722350:CDS | 35.0% |
| !! | TTTTCTTCCATGTAGCTTTG+TGG | + | chr5_1:19600916-19600935 | Msa0722350:intron | 35.0% |
| CTTGAATCTGTTGCAAAACA+TGG | - | chr5_1:19601030-19601049 | None:intergenic | 35.0% | |
| CAATGTCATAGCTTTCAATG+TGG | - | chr5_1:19601078-19601097 | None:intergenic | 35.0% | |
| AAGCATAGGTTCCTAATTAG+TGG | - | chr5_1:19601189-19601208 | None:intergenic | 35.0% | |
| TTCTCTTGCAATATTCATGC+TGG | - | chr5_1:19601259-19601278 | None:intergenic | 35.0% | |
| ! | GGTATAATTAACGGATCCAA+TGG | - | chr5_1:19601556-19601575 | None:intergenic | 35.0% |
| GACATAAAGTGAATGTGAAC+TGG | - | chr5_1:19601577-19601596 | None:intergenic | 35.0% | |
| GGTTTAAGCAGTAAATCTAC+TGG | + | chr5_1:19601704-19601723 | Msa0722350:CDS | 35.0% | |
| TGCAGAATTTGATCCCTTAA+AGG | + | chr5_1:19601773-19601792 | Msa0722350:intron | 35.0% | |
| ATCAACTCCAGTTAGAAACA+TGG | - | chr5_1:19601966-19601985 | None:intergenic | 35.0% | |
| AAACAACAACAAGACTGACA+AGG | + | chr5_1:19602304-19602323 | Msa0722350:intron | 35.0% | |
| AACAAGACTGACAAGGAATA+TGG | + | chr5_1:19602311-19602330 | Msa0722350:intron | 35.0% | |
| AACACCTCATGAATTGTCAA+AGG | - | chr5_1:19602343-19602362 | None:intergenic | 35.0% | |
| !! | ATGAGGTGTTGATTAGACAT+TGG | + | chr5_1:19602353-19602372 | Msa0722350:intron | 35.0% |
| ! | AAAGCCTTATCCTACTAAGT+GGG | - | chr5_1:19602603-19602622 | None:intergenic | 35.0% |
| TAGAGAGTTAGAGAAAGACA+TGG | + | chr5_1:19602716-19602735 | Msa0722350:intron | 35.0% | |
| GTAGGGTCTTTCTAATCATT+TGG | + | chr5_1:19603028-19603047 | Msa0722350:intron | 35.0% | |
| AAGGAGAAAGACAAACTCTT+GGG | - | chr5_1:19603197-19603216 | None:intergenic | 35.0% | |
| ! | CTACTATTGCCATTTACTTG+AGG | + | chr5_1:19603301-19603320 | Msa0722350:intron | 35.0% |
| !!! | CACAATCTAGCACTAGTTTT+AGG | - | chr5_1:19603612-19603631 | None:intergenic | 35.0% |
| GGGGTTTGCAAAATTCAAAA+GGG | - | chr5_1:19603677-19603696 | None:intergenic | 35.0% | |
| AGGGGTTTGCAAAATTCAAA+AGG | - | chr5_1:19603678-19603697 | None:intergenic | 35.0% | |
| TTCAAAGTTCCCAGCTTAAA+GGG | - | chr5_1:19603697-19603716 | None:intergenic | 35.0% | |
| ATTCAAAGTTCCCAGCTTAA+AGG | - | chr5_1:19603698-19603717 | None:intergenic | 35.0% | |
| TTTCTCTTTACCTGCATCAT+AGG | - | chr5_1:19603846-19603865 | None:intergenic | 35.0% | |
| GGTAGACTTGAATATGCAAA+AGG | + | chr5_1:19604014-19604033 | Msa0722350:three_prime_UTR | 35.0% | |
| GTTTGTTTCATCCGTGTGTT+TGG | - | chr5_1:19599839-19599858 | None:intergenic | 40.0% | |
| GAATCTGTGTGCAATGCTAT+CGG | - | chr5_1:19599982-19600001 | None:intergenic | 40.0% | |
| ATAGCATTGCACACAGATTC+AGG | + | chr5_1:19599982-19600001 | Msa0722350:CDS | 40.0% | |
| CAAGAGAGTGAGATATTTCG+CGG | - | chr5_1:19600028-19600047 | None:intergenic | 40.0% | |
| !! | ATTTACAGACGGAGGTATCT+CGG | - | chr5_1:19600069-19600088 | None:intergenic | 40.0% |
| TCATCGGTGAGATTTACAGA+CGG | - | chr5_1:19600080-19600099 | None:intergenic | 40.0% | |
| GTTAATTACCTGAGCAGCAA+TGG | - | chr5_1:19600334-19600353 | None:intergenic | 40.0% | |
| AAACTACGACACCTATCTGA+AGG | - | chr5_1:19600454-19600473 | None:intergenic | 40.0% | |
| ATTCTCCTTACCTCCATTCA+TGG | + | chr5_1:19600778-19600797 | Msa0722350:CDS | 40.0% | |
| ATTTGCCATGAATGGAGGTA+AGG | - | chr5_1:19600786-19600805 | None:intergenic | 40.0% | |
| GAAGAATTTGCCATGAATGG+AGG | - | chr5_1:19600791-19600810 | None:intergenic | 40.0% | |
| GCAGAAGAATTTGCCATGAA+TGG | - | chr5_1:19600794-19600813 | None:intergenic | 40.0% | |
| TCTGTTGCAAAACATGGCTT+AGG | - | chr5_1:19601024-19601043 | None:intergenic | 40.0% | |
| TCATAGCTTTCAATGTGGCA+AGG | - | chr5_1:19601073-19601092 | None:intergenic | 40.0% | |
| GAATATTGCAAGAGAAGACG+AGG | + | chr5_1:19601263-19601282 | Msa0722350:intron | 40.0% | |
| TCTCAATGATTGCTTGGTCA+AGG | + | chr5_1:19601374-19601393 | Msa0722350:intron | 40.0% | |
| ! | TTGCTTCGTGTTTTGTCCAT+TGG | + | chr5_1:19601537-19601556 | Msa0722350:intron | 40.0% |
| ! | TACTGTGCCATGTTTCTAAC+TGG | + | chr5_1:19601956-19601975 | Msa0722350:intron | 40.0% |
| GATGCCTTTGACAATTCATG+AGG | + | chr5_1:19602336-19602355 | Msa0722350:intron | 40.0% | |
| TAATGTTTATTGTGGCCCTC+TGG | + | chr5_1:19602513-19602532 | Msa0722350:intron | 40.0% | |
| ! | GCAATAGAGTTGATTCCAGA+GGG | - | chr5_1:19602531-19602550 | None:intergenic | 40.0% |
| ! | TGCAATAGAGTTGATTCCAG+AGG | - | chr5_1:19602532-19602551 | None:intergenic | 40.0% |
| ! | CAAAGCCTTATCCTACTAAG+TGG | - | chr5_1:19602604-19602623 | None:intergenic | 40.0% |
| CACTTAGTAGGATAAGGCTT+TGG | + | chr5_1:19602602-19602621 | Msa0722350:intron | 40.0% | |
| GGAAGGGAATAGAAATATGG+TGG | + | chr5_1:19602961-19602980 | Msa0722350:intron | 40.0% | |
| CAAGGAGAAAGACAAACTCT+TGG | - | chr5_1:19603198-19603217 | None:intergenic | 40.0% | |
| GTATCTCACCCTCAAGTAAA+TGG | - | chr5_1:19603313-19603332 | None:intergenic | 40.0% | |
| TTACTTGAGGGTGAGATACA+CGG | + | chr5_1:19603314-19603333 | Msa0722350:intron | 40.0% | |
| ! | TTTTGCAAACCCCTTTAAGC+TGG | + | chr5_1:19603684-19603703 | Msa0722350:intron | 40.0% |
| TTTGCAAACCCCTTTAAGCT+GGG | + | chr5_1:19603685-19603704 | Msa0722350:intron | 40.0% | |
| TCAAAGTTCCCAGCTTAAAG+GGG | - | chr5_1:19603696-19603715 | None:intergenic | 40.0% | |
| ! | TTGTTTTCCTCCTATGATGC+AGG | + | chr5_1:19603833-19603852 | Msa0722350:intron | 40.0% |
| ACAACTTAGCAGCATGCAGA+TGG | + | chr5_1:19599857-19599876 | Msa0722350:exon | 45.0% | |
| AGATATCATGTTGCCGCTGT+CGG | - | chr5_1:19599907-19599926 | None:intergenic | 45.0% | |
| AGATATTTCGCGGTTGGGAT+CGG | - | chr5_1:19600018-19600037 | None:intergenic | 45.0% | |
| GAGTGAGATATTTCGCGGTT+GGG | - | chr5_1:19600023-19600042 | None:intergenic | 45.0% | |
| AGAGTGAGATATTTCGCGGT+TGG | - | chr5_1:19600024-19600043 | None:intergenic | 45.0% | |
| AGATCGCTTTGTCATTCTCG+TGG | + | chr5_1:19600109-19600128 | Msa0722350:CDS | 45.0% | |
| ! | ATGATGGAACTACGAACCAC+CGG | - | chr5_1:19600140-19600159 | None:intergenic | 45.0% |
| CTTGTTACGTTGCCTTCGAA+TGG | + | chr5_1:19600168-19600187 | Msa0722350:CDS | 45.0% | |
| !! | AAGCCGGGTTTGTTGAATGT+AGG | - | chr5_1:19600628-19600647 | None:intergenic | 45.0% |
| ! | AAGCTAACCTGTCTAAAGCC+GGG | - | chr5_1:19600643-19600662 | None:intergenic | 45.0% |
| ! | GAAGCTAACCTGTCTAAAGC+CGG | - | chr5_1:19600644-19600663 | None:intergenic | 45.0% |
| AGAAGTTCAGGCCACAATTG+AGG | - | chr5_1:19600952-19600971 | None:intergenic | 45.0% | |
| TTGCTTGGTCAAGGAGAGAA+TGG | + | chr5_1:19601383-19601402 | Msa0722350:intron | 45.0% | |
| CTACGCTAGAAATGTTGCAG+TGG | - | chr5_1:19601439-19601458 | None:intergenic | 45.0% | |
| ! | TGACCTTGTTTGTGGAGTTG+AGG | + | chr5_1:19601750-19601769 | Msa0722350:intron | 45.0% |
| CTTATCCTACTAAGTGGGAC+CGG | - | chr5_1:19602598-19602617 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr5_1:19602785-19602804 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr5_1:19602786-19602805 | None:intergenic | 45.0% |
| TGACCCTGCCACAAGATTAA+GGG | + | chr5_1:19603006-19603025 | Msa0722350:intron | 45.0% | |
| CTACCCTTAATCTTGTGGCA+GGG | - | chr5_1:19603012-19603031 | None:intergenic | 45.0% | |
| CTGCCACAAGATTAAGGGTA+GGG | + | chr5_1:19603011-19603030 | Msa0722350:intron | 45.0% | |
| AGACCCTACCCTTAATCTTG+TGG | - | chr5_1:19603017-19603036 | None:intergenic | 45.0% | |
| GGACATAATGTGAAGACCGA+GGG | - | chr5_1:19603342-19603361 | None:intergenic | 45.0% | |
| ! | GCTAGATTGTGACGCTTTTC+TGG | + | chr5_1:19603621-19603640 | Msa0722350:intron | 45.0% |
| CTCTTTACCTGCATCATAGG+AGG | - | chr5_1:19603843-19603862 | None:intergenic | 45.0% | |
| TGCAAAAGGTCCCTCTAAGT+AGG | + | chr5_1:19604028-19604047 | Msa0722350:three_prime_UTR | 45.0% | |
| GCAAAAGGTCCCTCTAAGTA+GGG | + | chr5_1:19604029-19604048 | Msa0722350:three_prime_UTR | 45.0% | |
| CAAAAGGTCCCTCTAAGTAG+GGG | + | chr5_1:19604030-19604049 | Msa0722350:three_prime_UTR | 45.0% | |
| GATATCATGTTGCCGCTGTC+GGG | - | chr5_1:19599906-19599925 | None:intergenic | 50.0% | |
| GACAGCGGCAACATGATATC+TGG | + | chr5_1:19599906-19599925 | Msa0722350:CDS | 50.0% | |
| TCGGTGAGATTTACAGACGG+AGG | - | chr5_1:19600077-19600096 | None:intergenic | 50.0% | |
| TGTCATTCTCGTGGTCGAAC+CGG | + | chr5_1:19600118-19600137 | Msa0722350:CDS | 50.0% | |
| !! | CAACAAACCCGGCTTTAGAC+AGG | + | chr5_1:19600633-19600652 | Msa0722350:CDS | 50.0% |
| TGGCAGTCCACAAAGCTACA+TGG | - | chr5_1:19600926-19600945 | None:intergenic | 50.0% | |
| GACTGCCAATGCCTCAATTG+TGG | + | chr5_1:19600938-19600957 | Msa0722350:intron | 50.0% | |
| TCAGGCCACAATTGAGGCAT+TGG | - | chr5_1:19600946-19600965 | None:intergenic | 50.0% | |
| GGCACAAATACTAGAGGGAG+AGG | + | chr5_1:19601223-19601242 | Msa0722350:intron | 50.0% | |
| CGCTAGAAATGTTGCAGTGG+AGG | - | chr5_1:19601436-19601455 | None:intergenic | 50.0% | |
| GAAGTAGAGCAGCATCAGGA+AGG | + | chr5_1:19601665-19601684 | Msa0722350:CDS | 50.0% | |
| ! | GAAGGCACATCTAGAGCTGT+TGG | + | chr5_1:19601683-19601702 | Msa0722350:CDS | 50.0% |
| GCACCTCAACTCCACAAACA+AGG | - | chr5_1:19601756-19601775 | None:intergenic | 50.0% | |
| CGGTCCCACTTAGTAGGATA+AGG | + | chr5_1:19602596-19602615 | Msa0722350:intron | 50.0% | |
| ATGTAGTCGACCCCACTTAG+TGG | + | chr5_1:19602772-19602791 | Msa0722350:intron | 50.0% | |
| TGTAGTCGACCCCACTTAGT+GGG | + | chr5_1:19602773-19602792 | Msa0722350:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr5_1:19602787-19602806 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr5_1:19602784-19602803 | Msa0722350:intron | 50.0% | |
| AATCTTGTGGCAGGGTCACT+CGG | - | chr5_1:19603004-19603023 | None:intergenic | 50.0% | |
| GTGACCCTGCCACAAGATTA+AGG | + | chr5_1:19603005-19603024 | Msa0722350:intron | 50.0% | |
| CCTACCCTTAATCTTGTGGC+AGG | - | chr5_1:19603013-19603032 | None:intergenic | 50.0% | |
| CCTGCCACAAGATTAAGGGT+AGG | + | chr5_1:19603010-19603029 | Msa0722350:intron | 50.0% | |
| GGGACATAATGTGAAGACCG+AGG | - | chr5_1:19603343-19603362 | None:intergenic | 50.0% | |
| GCTAGCTACCATTGCTGCTC+AGG | + | chr5_1:19600323-19600342 | Msa0722350:CDS | 55.0% | |
| CCTGCAGTTGGCAGATCCAT+TGG | - | chr5_1:19601646-19601665 | None:intergenic | 55.0% | |
| CCAATGGATCTGCCAACTGC+AGG | + | chr5_1:19601643-19601662 | Msa0722350:intron | 55.0% | |
| GCTGCTCTACTTCCTGCAGT+TGG | - | chr5_1:19601658-19601677 | None:intergenic | 55.0% | |
| GCAGGAAGTAGAGCAGCATC+AGG | + | chr5_1:19601661-19601680 | Msa0722350:intron | 55.0% | |
| TGTAGCCGGTCCCACTTAGT+AGG | + | chr5_1:19602590-19602609 | Msa0722350:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr5_1:19602779-19602798 | Msa0722350:intron | 55.0% | |
| GGTGAGATACACGGTTCCCT+CGG | + | chr5_1:19603323-19603342 | Msa0722350:intron | 55.0% | |
| CGTAGCGACCCCTACTTAGA+GGG | - | chr5_1:19604041-19604060 | None:intergenic | 55.0% | |
| TCGTAGCGACCCCTACTTAG+AGG | - | chr5_1:19604042-19604061 | None:intergenic | 55.0% | |
| !! | AGACGGAGGTATCTCGGCGT+CGG | - | chr5_1:19600063-19600082 | None:intergenic | 60.0% |
| CATTCTCGTGGTCGAACCGG+TGG | + | chr5_1:19600121-19600140 | Msa0722350:CDS | 60.0% | |
| CATGTTGCCGCTGTCGGGTC+CGG | - | chr5_1:19599901-19599920 | None:intergenic | 65.0% | |
| TCGCGGTTGGGATCGGCGTT+GGG | - | chr5_1:19600011-19600030 | None:intergenic | 65.0% | |
| TTCGCGGTTGGGATCGGCGT+TGG | - | chr5_1:19600012-19600031 | None:intergenic | 65.0% | |
| !! | GGAGGTATCTCGGCGTCGGC+GGG | - | chr5_1:19600059-19600078 | None:intergenic | 70.0% |
| !! | CGGAGGTATCTCGGCGTCGG+CGG | - | chr5_1:19600060-19600079 | None:intergenic | 70.0% |
| ! | GCCAACGCCGACGCCGTCGC+CGG | + | chr5_1:19599879-19599898 | Msa0722350:CDS | 80.0% |
| !!! | TCCGGCGACGGCGTCGGCGT+TGG | - | chr5_1:19599883-19599902 | None:intergenic | 80.0% |
| ! | GTCGGGTCCGGCGACGGCGT+CGG | - | chr5_1:19599889-19599908 | None:intergenic | 80.0% |
| ! | GCCGTCGCCGGACCCGACAG+CGG | + | chr5_1:19599891-19599910 | Msa0722350:CDS | 80.0% |
| ! | GCCGCTGTCGGGTCCGGCGA+CGG | - | chr5_1:19599895-19599914 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 19599827 | 19604177 | 19599827 | ID=Msa0722350;Name=Msa0722350 |
| chr5_1 | mRNA | 19599827 | 19604177 | 19599827 | ID=Msa0722350-mRNA-1;Parent=Msa0722350;Name=Msa0722350-mRNA-1;_AED=0.09;_eAED=0.09;_QI=43|0.66|0.85|0.85|0.33|0.57|7|234|264 |
| chr5_1 | exon | 19599827 | 19600232 | 19599827 | ID=Msa0722350-mRNA-1:exon:7403;Parent=Msa0722350-mRNA-1 |
| chr5_1 | exon | 19600306 | 19600344 | 19600306 | ID=Msa0722350-mRNA-1:exon:7404;Parent=Msa0722350-mRNA-1 |
| chr5_1 | exon | 19600436 | 19600513 | 19600436 | ID=Msa0722350-mRNA-1:exon:7405;Parent=Msa0722350-mRNA-1 |
| chr5_1 | exon | 19600602 | 19600654 | 19600602 | ID=Msa0722350-mRNA-1:exon:7406;Parent=Msa0722350-mRNA-1 |
| chr5_1 | exon | 19600729 | 19600840 | 19600729 | ID=Msa0722350-mRNA-1:exon:7407;Parent=Msa0722350-mRNA-1 |
| chr5_1 | exon | 19601665 | 19601725 | 19601665 | ID=Msa0722350-mRNA-1:exon:7408;Parent=Msa0722350-mRNA-1 |
| chr5_1 | exon | 19603855 | 19604177 | 19603855 | ID=Msa0722350-mRNA-1:exon:7409;Parent=Msa0722350-mRNA-1 |
| chr5_1 | five_prime_UTR | 19599827 | 19599869 | 19599827 | ID=Msa0722350-mRNA-1:five_prime_utr;Parent=Msa0722350-mRNA-1 |
| chr5_1 | CDS | 19599870 | 19600232 | 19599870 | ID=Msa0722350-mRNA-1:cds;Parent=Msa0722350-mRNA-1 |
| chr5_1 | CDS | 19600306 | 19600344 | 19600306 | ID=Msa0722350-mRNA-1:cds;Parent=Msa0722350-mRNA-1 |
| chr5_1 | CDS | 19600436 | 19600513 | 19600436 | ID=Msa0722350-mRNA-1:cds;Parent=Msa0722350-mRNA-1 |
| chr5_1 | CDS | 19600602 | 19600654 | 19600602 | ID=Msa0722350-mRNA-1:cds;Parent=Msa0722350-mRNA-1 |
| chr5_1 | CDS | 19600729 | 19600840 | 19600729 | ID=Msa0722350-mRNA-1:cds;Parent=Msa0722350-mRNA-1 |
| chr5_1 | CDS | 19601665 | 19601725 | 19601665 | ID=Msa0722350-mRNA-1:cds;Parent=Msa0722350-mRNA-1 |
| chr5_1 | CDS | 19603855 | 19603943 | 19603855 | ID=Msa0722350-mRNA-1:cds;Parent=Msa0722350-mRNA-1 |
| chr5_1 | three_prime_UTR | 19603944 | 19604177 | 19603944 | ID=Msa0722350-mRNA-1:three_prime_utr;Parent=Msa0722350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
