AlfalfaGEDB | Msa0786040

M. sativa cultivar zhongmu-4 / Msa0786040

KEGG: K04733
GO: GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042579 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786040	sp\|F4JEQ2\|PBL23_ARATH	70.270	333	96	3	32	363	32	362	5.95e-175	495

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786040	A0A396HWK9	99.474	380	2	0	6	385	22	401	0.0	786

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0062440	Msa0786040	0.800892	1.164396e-48	-8.615850e-47
Msa0084500	Msa0786040	0.820493	6.661884e-53	-8.615850e-47
Msa0104500	Msa0786040	0.830866	2.306569e-55	-8.615850e-47
Msa0124130	Msa0786040	0.818992	1.467065e-52	-8.615850e-47
Msa0130570	Msa0786040	0.803240	3.830546e-49	-8.615850e-47
Msa0149140	Msa0786040	0.800536	1.376674e-48	-8.615850e-47
Msa0152480	Msa0786040	0.814337	1.621714e-51	-8.615850e-47
Msa0152500	Msa0786040	0.806878	6.640267e-50	-8.615850e-47
Msa0176470	Msa0786040	0.802180	6.338735e-49	-8.615850e-47
Msa0236110	Msa0786040	0.804898	1.731476e-49	-8.615850e-47

Showing 1 to 10 of 92 entries

Previous1 2 3 4 5…10Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786040	MtrunA17_Chr5g0443691	99.474	380	2	0	6	385	22	401	0.0	786
Msa0786040	MtrunA17_Chr2g0286281	70.805	298	86	1	65	362	71	367	3.72e-157	452
Msa0786040	MtrunA17_Chr7g0263521	59.945	362	133	4	20	377	6	359	7.70e-157	446
Msa0786040	MtrunA17_Chr1g0213991	68.227	299	94	1	64	362	78	375	1.85e-155	446
Msa0786040	MtrunA17_Chr1g0181821	65.472	307	105	1	65	371	56	361	3.30e-153	437
Msa0786040	MtrunA17_Chr7g0237401	56.952	374	135	4	14	363	1	372	6.47e-153	438
Msa0786040	MtrunA17_Chr2g0327511	57.880	349	138	3	18	362	43	386	8.67e-148	424
Msa0786040	MtrunA17_Chr3g0143961	57.143	350	144	3	14	362	1	345	1.48e-147	422
Msa0786040	MtrunA17_Chr2g0288121	62.305	321	120	1	43	363	2	321	9.05e-147	420
Msa0786040	MtrunA17_Chr2g0327471	63.514	296	107	1	67	362	75	369	1.76e-143	413

Showing 1 to 10 of 504 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0786040	AT3G20530.1	70.270	333	96	3	32	363	32	362	6.05e-176	495
Msa0786040	AT5G18610.1	61.173	358	126	4	17	362	5	361	1.26e-156	451
Msa0786040	AT5G18610.2	61.173	358	126	4	17	362	5	361	1.26e-156	451
Msa0786040	AT5G18610.3	61.173	358	126	4	17	362	5	361	1.26e-156	451
Msa0786040	AT5G13160.1	61.919	344	123	3	23	362	25	364	3.52e-156	447
Msa0786040	AT5G02800.1	67.785	298	95	1	65	362	55	351	8.90e-154	439
Msa0786040	AT1G61860.1	64.242	330	115	3	49	378	52	378	1.72e-152	436
Msa0786040	AT3G24790.2	57.593	349	142	3	14	362	1	343	2.72e-146	420
Msa0786040	AT3G24790.1	63.072	306	112	1	57	362	21	325	5.41e-146	418
Msa0786040	AT1G07870.1	55.211	355	155	2	11	362	28	381	1.91e-143	414

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 94 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGAACTACCCAATGA+GGG	0.597816	5_2:+71434968	Msa0786040:CDS
AAAATTGATCCTGTGAATTT+TGG	0.134781	5_2:-71432453	None:intergenic
AAAGAAACTTCTATTGAGAA+AGG	0.507151	5_2:+71435128	Msa0786040:CDS
AAAGGGAACTACCCAATGAG+GGG	0.687981	5_2:+71434969	Msa0786040:CDS
AAATCGCGATATATCACCGG+TGG	0.633257	5_2:-71434139	None:intergenic
AAATGAATTTCATAGATTAG+AGG	0.428405	5_2:+71435165	Msa0786040:three_prime_UTR
AACAATATGATTGGTGAAGG+AGG	0.575519	5_2:+71433166	Msa0786040:CDS
AAGAAGAAAACTTGGTCATT+TGG	0.273520	5_2:+71434410	Msa0786040:CDS
AAGCAGGGAATTTCTTGCAG+AGG	0.592757	5_2:+71433552	Msa0786040:CDS
AAGGTTACATTGATTTGAAA+AGG	0.417280	5_2:+71432551	Msa0786040:five_prime_UTR

Showing 1 to 10 of 94 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTTGGCCAGATCAAATATTT+AGG	+	chr5_2:71432608-71432627	Msa0786040:CDS	30.0%
TTGGCCAGATCAAATATTTA+GGG	+	chr5_2:71432609-71432628	Msa0786040:CDS	30.0%
TGAGGAAGATTAACATTGAA+GGG	-	chr5_2:71432752-71432771	None:intergenic	30.0%
ATGAGGAAGATTAACATTGA+AGG	-	chr5_2:71432753-71432772	None:intergenic	30.0%
GAAAACACAAGAAATGGAAA+AGG	+	chr5_2:71433079-71433098	Msa0786040:CDS	30.0%
ATCAACAATATGATTGGTGA+AGG	+	chr5_2:71433163-71433182	Msa0786040:CDS	30.0%
TGCTAACAAAGTAAGTTATC+CGG	+	chr5_2:71433273-71433292	Msa0786040:intron	30.0%
ACCTCTAGATCATATTTCAA+CGG	+	chr5_2:71433348-71433367	Msa0786040:intron	30.0%
ATTGAACAAGACGATTTAAC+CGG	-	chr5_2:71433432-71433451	None:intergenic	30.0%
TGCTGTAAAGAAACTTAACA+AGG	+	chr5_2:71433516-71433535	Msa0786040:CDS	30.0%

Showing 1 to 10 of 182 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	71432374	71435309	71432374	ID=Msa0786040;Name=Msa0786040
chr5_2	mRNA	71432374	71435309	71432374	ID=Msa0786040-mRNA-1;Parent=Msa0786040;Name=Msa0786040-mRNA-1;_AED=0.10;_eAED=0.10;_QI=227\|1\|1\|1\|1\|1\|5\|146\|385
chr5_2	exon	71432374	71432736	71432374	ID=Msa0786040-mRNA-1:exon:21531;Parent=Msa0786040-mRNA-1
chr5_2	exon	71433047	71433234	71433047	ID=Msa0786040-mRNA-1:exon:21532;Parent=Msa0786040-mRNA-1
chr5_2	exon	71433511	71433700	71433511	ID=Msa0786040-mRNA-1:exon:21533;Parent=Msa0786040-mRNA-1
chr5_2	exon	71434041	71434432	71434041	ID=Msa0786040-mRNA-1:exon:21534;Parent=Msa0786040-mRNA-1
chr5_2	exon	71434912	71435309	71434912	ID=Msa0786040-mRNA-1:exon:21535;Parent=Msa0786040-mRNA-1
chr5_2	five_prime_UTR	71432374	71432600	71432374	ID=Msa0786040-mRNA-1:five_prime_utr;Parent=Msa0786040-mRNA-1
chr5_2	CDS	71432601	71432736	71432601	ID=Msa0786040-mRNA-1:cds;Parent=Msa0786040-mRNA-1
chr5_2	CDS	71433047	71433234	71433047	ID=Msa0786040-mRNA-1:cds;Parent=Msa0786040-mRNA-1
chr5_2	CDS	71433511	71433700	71433511	ID=Msa0786040-mRNA-1:cds;Parent=Msa0786040-mRNA-1
chr5_2	CDS	71434041	71434432	71434041	ID=Msa0786040-mRNA-1:cds;Parent=Msa0786040-mRNA-1
chr5_2	CDS	71434912	71435163	71434912	ID=Msa0786040-mRNA-1:cds;Parent=Msa0786040-mRNA-1
chr5_2	three_prime_UTR	71435164	71435309	71435164	ID=Msa0786040-mRNA-1:three_prime_utr;Parent=Msa0786040-mRNA-1

Gene Sequence

>Msa0786040

ATGTGGTTTTGGCCAGATCAAATATTTAGGGGTTGGAAAATGAGCTTTTTTGCATGTTGTAAGTCACAAGAGAAGAACACCAAGAACACATTGAAGAAAAGCATTAAGGACTATCATAACATTTGTTCTAAATCTGATGGTGGCAAAAGGAAGTACATAGCAGAGGAAGAAAACACAAGAAATGGAAAAGGAAATATTACCTCTAAGATACTTTCTTACCATGAGCTATGTGTTGCAACTAAGAATTTTCACATCAACAATATGATTGGTGAAGGAGGCTTTGGGAGAGTATACAAAGGGCGCATTAAAAGCATAAATAATAAGGTTGTTGCTGTAAAGAAACTTAACAAGGATGGATTTCAAGGAAGCAGGGAATTTCTTGCAGAGGTTATGATTTTGAGTTTCTTGCACCACTCTAACCTTGTCAATTTGGTAGGGTATTGTGCAGAAGGTGATCAAAGGATTTTGGTATATGAGTATATGGCGAATGGTTCGTTAGAAGATCACCTTTTTGAGTTACCTCCGGGCAAAAAGCCTTTGGATTGGCACACTAGAATGAAAATTGCAGAAGGTGCGGCGAAAGGACTTGAATACTTACACGCAGAAGCAAAGCCACCGGTGATATATCGCGATTTCAAAGCATCAAACATACTCTTAGATGAAAATTTCAATCCAAAACTCTCTGATTTTGGACTTGCAAAGCTTGGTCCGACCGGCGATAAAACACATGTGTCCACTAGGGTGATGGGAACTTATGGCTATTGTGCACCTGAGTATGCCTCAACAGGTCAATTGACTACAAGGTCAGATGTTTATAGCTTTGGAGTGGTGTTTCTAGAGATGATTACTGGGAGAAGAGTACTTGATTCTTCAAGATCAGCTGAAGAAGAAAACTTGGTCATTTGGGCACTACCACTACTCAAAAACAAAAGAAAATATACATCAATGGTTGATCCATTGCTAAAAGGGAACTACCCAATGAGGGGTCTATTCCAAGCACTAGCAATTGCAGCAATGTGTCTATTGGAGGATGCTAATGCTCGACCTTTGATTGGTGATGTAGTCACAGCTCTTGAAGTTTTAGCAATGAGGCATGTACAAGTGGGTAAACAAAAACATACAAAAGAAACTTCTATTGAGAAAGGAGAATGCAGTTGA

Protein sequence

>Msa0786040

MWFWPDQIFRGWKMSFFACCKSQEKNTKNTLKKSIKDYHNICSKSDGGKRKYIAEEENTRNGKGNITSKILSYHELCVATKNFHINNMIGEGGFGRVYKGRIKSINNKVVAVKKLNKDGFQGSREFLAEVMILSFLHHSNLVNLVGYCAEGDQRILVYEYMANGSLEDHLFELPPGKKPLDWHTRMKIAEGAAKGLEYLHAEAKPPVIYRDFKASNILLDENFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYASTGQLTTRSDVYSFGVVFLEMITGRRVLDSSRSAEEENLVIWALPLLKNKRKYTSMVDPLLKGNYPMRGLFQALAIAAMCLLEDANARPLIGDVVTALEVLAMRHVQVGKQKHTKETSIEKGECS*