AlfalfaGEDB | Msa1124660

M. sativa cultivar zhongmu-4 / Msa1124660

KEGG: K03457
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006206 GO:0006725 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009526 GO:0009536 GO:0009987 GO:0015205 GO:0015851 GO:0016020 GO:0018130 GO:0019438 GO:0019856 GO:0022857 GO:0031967 GO:0031975 GO:0034641 GO:0034654 GO:0043094 GO:0043100 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046112 GO:0046483 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072527 GO:0072528 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
PFAM: PF02133.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1124660	XP_003625746.1	96.782	435	13	1	25	459	1	434	0.0	836

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1124660	sp\|Q9LZD0\|NCS1_ARATH	79.292	367	75	1	94	459	104	470	0.0	571

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1124660	G7L4Z7	96.782	435	13	1	25	459	1	434	0.0	836

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0017710	Msa1124660	0.804465	2.132076e-49	-8.615850e-47
Msa0238110	Msa1124660	0.801904	7.224547e-49	-8.615850e-47
Msa0307630	Msa1124660	0.804757	1.853296e-49	-8.615850e-47
Msa0414480	Msa1124660	0.801183	1.015486e-48	-8.615850e-47
Msa0535570	Msa1124660	0.802574	5.260236e-49	-8.615850e-47
Msa0549170	Msa1124660	0.812340	4.453703e-51	-8.615850e-47
Msa0591490	Msa1124660	0.817579	3.065731e-52	-8.615850e-47
Msa0689840	Msa1124660	0.806620	7.528015e-50	-8.615850e-47
Msa0732970	Msa1124660	0.808332	3.262022e-50	-8.615850e-47
Msa0768670	Msa1124660	0.804286	2.323997e-49	-8.615850e-47

Showing 1 to 10 of 29 entries

Previous1 2 3Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1124660	MtrunA17_Chr7g0265231	96.782	435	13	1	25	459	1	434	0.0	836
Msa1124660	MtrunA17_Chr1g0179791	72.260	447	109	6	17	459	20	455	0.0	592

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1124660	AT5G03555.1	79.292	367	75	1	94	459	104	470	0.0	571

Showing 1 to 1 of 1 entries

Previous1Next

Find 100 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTATTATGCAAGGCA+TGG	0.527048	7_3:+75817667	None:intergenic
AAAGATGATCTAGCAAGAAC+CGG	0.493577	7_3:+75816949	None:intergenic
AACCAACTAAGGCCCTTAAA+AGG	0.233275	7_3:+75816899	None:intergenic
AACTAAGGCCCTTAAAAGGG+TGG	0.577930	7_3:+75816903	None:intergenic
AACTCTCAAAGTCAGAATTT+TGG	0.301598	7_3:-75816576	Msa1124660:CDS
AAGATCATCATTGGTAAGTG+TGG	0.537536	7_3:+75817581	None:intergenic
AAGCCATCCCAAGATCAACA+AGG	0.710232	7_3:+75817457	None:intergenic
ACCAACTAAGGCCCTTAAAA+GGG	0.516958	7_3:+75816900	None:intergenic
ACCAAGTAATTGAATTGGGT+TGG	0.450613	7_3:+75816351	None:intergenic
ACTAAGGCCCTTAAAAGGGT+GGG	0.621679	7_3:+75816904	None:intergenic

Showing 1 to 10 of 100 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGGTAATAGATTCTTGATGA+TGG	+	chr7_3:75816263-75816282	None:intergenic	30.0%
TGTAGAAACTAATGTCTGAT+TGG	+	chr7_3:75816286-75816305	None:intergenic	30.0%
AAACATTATTATGCAAGGCA+TGG	+	chr7_3:75816467-75816486	None:intergenic	30.0%
CGATGAAACATTATTATGCA+AGG	+	chr7_3:75816472-75816491	None:intergenic	30.0%
AGAAAAAGGGACTATAGAAT+TGG	+	chr7_3:75816502-75816521	None:intergenic	30.0%
CAAAACCATGTGAAGAAAAA+GGG	+	chr7_3:75816515-75816534	None:intergenic	30.0%
TCAAAACCATGTGAAGAAAA+AGG	+	chr7_3:75816516-75816535	None:intergenic	30.0%
TCTTGATACGTGTGAATATA+CGG	-	chr7_3:75817027-75817046	Msa1124660:intron	30.0%
TATTAGCTGCCAAACATATA+TGG	-	chr7_3:75817068-75817087	Msa1124660:intron	30.0%
TCTCATCAACTTAAAATCTC+TGG	-	chr7_3:75817122-75817141	Msa1124660:intron	30.0%

Showing 1 to 10 of 312 entries

Previous1 2 3 4 5…32Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	75816150	75818003	75816150	ID=Msa1124660;Name=Msa1124660
chr7_3	mRNA	75816150	75818003	75816150	ID=Msa1124660-mRNA-1;Parent=Msa1124660;Name=Msa1124660-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|0.5\|0\|0.66\|0.5\|0.33\|3\|0\|459
chr7_3	exon	75817984	75818003	75817984	ID=Msa1124660-mRNA-1:exon:20537;Parent=Msa1124660-mRNA-1
chr7_3	exon	75817382	75817893	75817382	ID=Msa1124660-mRNA-1:exon:20536;Parent=Msa1124660-mRNA-1
chr7_3	exon	75816150	75816994	75816150	ID=Msa1124660-mRNA-1:exon:20535;Parent=Msa1124660-mRNA-1
chr7_3	CDS	75817984	75818003	75817984	ID=Msa1124660-mRNA-1:cds;Parent=Msa1124660-mRNA-1
chr7_3	CDS	75817382	75817893	75817382	ID=Msa1124660-mRNA-1:cds;Parent=Msa1124660-mRNA-1
chr7_3	CDS	75816150	75816994	75816150	ID=Msa1124660-mRNA-1:cds;Parent=Msa1124660-mRNA-1

Gene Sequence

>Msa1124660

ATGATAGGAAGTAACCAAAACCATCATCAAGAATCTATTACCTCCAATCAGACATTAGTTTCTACAATCAACATGGTATCCAAATGTCTCAACCTCAATGTCTCTTCTTCTCATCCAAATAATTTTCTCACATCAATTTCAAATTCAAAATATCCAAAGCTCTCTAACTCTCTTACCCTTCTTCCATCATCAAAAAAACTAAACAAGACCTTCCATGCACAAAACCATGCCTTGCATAATAATGTTTCATCGAGATACTCCAATTCTATAGTCCCTTTTTCTTCACATGGTTTTGAAATAGAGCCTGATCCCACACTTACCAATGATGATCTTAAGCCAACTACACCTAGCCAAAGGACTTTTTCTGGGTTAGAAATGGCTAGCCTTTGGGTAGGACTTGTTGTGGGAGTCCCTTCTTATTACCTTGCTGGTAGCCTTGTTGATCTTGGGATGGCTTGGTGGCAAGGCATAGCTACGGTGGTTGCAGCCAACATTATCCTTTTTGTTCCCCTGATCCTCACTGGTCATCCAGGTACGCGTTATGGCATATCATTTCCGGTTCTTGCTAGATCATCTTTTGGCATCCATGGTGCTCATATTCCCACCCTTTTAAGGGCCTTAGTTGGTTGTGGTTGGTATGGAATTGAAACATGGATTGGTGGTGAGACAATTTTCCTTCTTTTGCCAAATTCAATAAAACAAAGTACATTGTCAAAATCTCTACCATGGCTTGGCACTTCCCCACTAGAATTTTTTTGCTTCATAGCCTTCATGGGGGTTCAATTATCAATTGTATGGAAAGGAATTGAAGGGATTAGAGAGCTTGAGAAGTACTCAGCTCCAATACTCATTCTACTAGTTTCCTTACTCTTGATTTGGTCTTATGTTAAAGCTGGTGGATTTGGTCACATGCTCTCTTTATCCTCTAAACTCTCAAAGTCAGAATTTTGGTCTTTATTCTTCCCTTCTCTAACTGCTAATATAAGTTTTTGGGCTGCTCTTGCTCTTAACATACCTGATTTTACAAGATATGCTAAGAGCCAAAATGATCAAATTATTGGTCAAGCTGGTCTACCTATTTTTATGGGAGCATTCACATTTGTTGGTATAGTAGTAACATCATCAACAAAGATTATATTTGGTCATGTTATTTCCAACCCAATTCAATTACTTGGTAAAATTGGTGGATTTGTTACTACAATCTTAGCAATTCTTGGTATAAGCCTAGCTACAATTACAACCAATATTGCTGCCAATGTTGTAGCACCAGCAAATGCTCTTGTAAATCTTAGTCCAATGTGGTTCAATTTTAGAAGAGGAGCTATACTAACAACATTTCTTGGAATTGCATTTCAACCTTGGAAGCTTCTTAAGTCA

Protein sequence

>Msa1124660

MIGSNQNHHQESITSNQTLVSTINMVSKCLNLNVSSSHPNNFLTSISNSKYPKLSNSLTLLPSSKKLNKTFHAQNHALHNNVSSRYSNSIVPFSSHGFEIEPDPTLTNDDLKPTTPSQRTFSGLEMASLWVGLVVGVPSYYLAGSLVDLGMAWWQGIATVVAANIILFVPLILTGHPGTRYGISFPVLARSSFGIHGAHIPTLLRALVGCGWYGIETWIGGETIFLLLPNSIKQSTLSKSLPWLGTSPLEFFCFIAFMGVQLSIVWKGIEGIRELEKYSAPILILLVSLLLIWSYVKAGGFGHMLSLSSKLSKSEFWSLFFPSLTANISFWAALALNIPDFTRYAKSQNDQIIGQAGLPIFMGAFTFVGIVVTSSTKIIFGHVISNPIQLLGKIGGFVTTILAILGISLATITTNIAANVVAPANALVNLSPMWFNFRRGAILTTFLGIAFQPWKLLKS