AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1455360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1455360 MtrunA17_Chr7g0233831 93.519 324 21 0 1 324 1 324 0.0 625
Msa1455360 MtrunA17_Chr7g0233771 81.424 323 59 1 1 323 1 322 0.0 521
Msa1455360 MtrunA17_Chr7g0233801 73.112 331 88 1 1 331 1 330 9.33e-169 481
Msa1455360 MtrunA17_Chr2g0302021 45.909 220 101 8 122 331 92 303 6.84e-47 166
Msa1455360 MtrunA17_Chr1g0147051 34.965 286 153 9 76 331 103 385 1.75e-44 160
Msa1455360 MtrunA17_Chr7g0269541 32.931 331 185 8 22 325 8 328 4.82e-44 158
Msa1455360 MtrunA17_Chr7g0272141 37.229 231 125 5 118 331 102 329 1.10e-43 157
Msa1455360 MtrunA17_Chr8g0345281 34.219 301 168 9 56 331 72 367 5.86e-43 156
Msa1455360 MtrunA17_Chr4g0069861 40.090 222 112 7 122 331 83 295 1.18e-41 151
Msa1455360 MtrunA17_Chr4g0069841 37.500 240 137 5 98 331 62 294 3.17e-41 150
Msa1455360 MtrunA17_Chr4g0011791 38.136 236 122 7 101 331 74 290 2.81e-39 145
Msa1455360 MtrunA17_Chr3g0080391 34.310 239 146 4 98 325 113 351 2.06e-38 143
Msa1455360 MtrunA17_Chr3g0126771 30.812 357 206 11 10 331 25 375 7.47e-38 142
Msa1455360 MtrunA17_Chr4g0011771 34.409 279 154 10 54 325 30 286 1.19e-36 137
Msa1455360 MtrunA17_Chr8g0354901 31.959 291 181 8 48 325 72 358 2.93e-35 134
Msa1455360 MtrunA17_Chr3g0079341 39.352 216 111 8 124 331 101 304 5.14e-35 133
Msa1455360 MtrunA17_Chr4g0069881 33.068 251 152 5 84 331 75 312 8.62e-35 133
Msa1455360 MtrunA17_Chr7g0234731 39.713 209 106 9 124 324 120 316 9.65e-35 129
Msa1455360 MtrunA17_Chr3g0079351 39.815 216 110 9 124 331 101 304 1.06e-34 132
Msa1455360 MtrunA17_Chr1g0192321 29.310 348 206 9 18 331 19 360 1.48e-34 132
Msa1455360 MtrunA17_Chr8g0391281 34.632 231 126 5 113 324 86 310 1.00e-33 126
Msa1455360 MtrunA17_Chr1g0194091 35.169 236 121 7 115 322 101 332 1.03e-33 130
Msa1455360 MtrunA17_Chr3g0090091 38.158 228 123 9 112 331 88 305 1.30e-33 129
Msa1455360 MtrunA17_Chr1g0192311 36.681 229 128 8 117 330 119 345 1.39e-33 130
Msa1455360 MtrunA17_Chr1g0192281 36.681 229 128 8 117 330 119 345 1.39e-33 130
Msa1455360 MtrunA17_Chr4g0018371 37.559 213 123 4 125 331 108 316 1.52e-33 129
Msa1455360 MtrunA17_Chr8g0391311 34.043 235 136 4 113 331 88 319 6.55e-33 127
Msa1455360 MtrunA17_Chr3g0079361 38.426 216 113 8 124 331 101 304 7.76e-33 127
Msa1455360 MtrunA17_Chr8g0391291 34.513 226 129 4 113 322 86 308 2.65e-32 126
Msa1455360 MtrunA17_Chr4g0069891 30.345 290 169 8 56 322 85 364 2.85e-32 126
Msa1455360 MtrunA17_Chr1g0194081 33.193 238 131 5 110 322 100 334 7.39e-32 125
Msa1455360 MtrunA17_Chr8g0345211 31.399 293 173 7 56 331 81 362 5.65e-31 122
Msa1455360 MtrunA17_Chr7g0272151 27.640 322 194 9 37 331 50 359 6.20e-31 122
Msa1455360 MtrunA17_Chr2g0295541 28.571 336 167 11 57 331 15 338 2.74e-30 120
Msa1455360 MtrunA17_Chr2g0295531 28.322 286 189 7 53 331 44 320 3.18e-30 120
Msa1455360 MtrunA17_Chr4g0067611 33.333 231 126 7 122 330 121 345 4.25e-30 120
Msa1455360 MtrunA17_Chr7g0270631 32.189 233 128 6 120 322 94 326 1.05e-28 117
Msa1455360 MtrunA17_Chr7g0270631 32.189 233 128 7 120 322 642 874 1.04e-26 110
Msa1455360 MtrunA17_Chr1g0192301 33.913 230 133 7 117 330 124 350 1.53e-28 115
Msa1455360 MtrunA17_Chr4g0067601 28.623 276 163 6 80 330 79 345 1.78e-28 115
Msa1455360 MtrunA17_Chr2g0295551 32.287 223 136 6 122 331 118 338 2.57e-28 115
Msa1455360 MtrunA17_Chr7g0270651 28.428 299 180 8 54 322 44 338 3.78e-28 114
Msa1455360 MtrunA17_Chr4g0000121 33.624 229 133 7 118 330 107 332 8.26e-28 113
Msa1455360 MtrunA17_Chr7g0270661 31.760 233 129 7 120 322 106 338 1.03e-27 113
Msa1455360 MtrunA17_Chr7g0270671 31.760 233 129 7 120 322 106 338 1.03e-27 113
Msa1455360 MtrunA17_Chr7g0269511 35.443 237 120 8 122 325 101 337 1.22e-27 113
Msa1455360 MtrunA17_Chr1g0192331 31.987 297 173 10 48 331 24 304 1.51e-27 112
Msa1455360 MtrunA17_Chr1g0175661 34.298 242 115 8 122 325 96 331 4.12e-27 111
Msa1455360 MtrunA17_Chr4g0011751 36.744 215 103 8 121 322 64 258 5.53e-27 110
Msa1455360 MtrunA17_Chr7g0269531 30.104 289 166 6 73 325 50 338 3.14e-26 108
Msa1455360 MtrunA17_Chr2g0299431 47.872 94 47 1 218 311 29 120 4.68e-26 105
Msa1455360 MtrunA17_Chr7g0270691 29.596 223 130 6 120 322 104 319 1.34e-23 101
Msa1455360 MtrunA17_Chr7g0269521 32.520 246 127 7 122 331 99 341 4.35e-23 99.8
Msa1455360 MtrunA17_Chr1g0195331 31.120 241 126 7 122 325 91 328 5.29e-21 93.6
Msa1455360 MtrunA17_Chr5g0437831 43.158 95 53 1 221 314 50 144 8.79e-21 92.0
Msa1455360 MtrunA17_Chr1g0195351 30.705 241 127 7 122 325 91 328 1.70e-20 92.0
Msa1455360 MtrunA17_Chr1g0195301 30.705 241 127 7 122 325 91 328 1.77e-20 92.0
Msa1455360 MtrunA17_Chr1g0195321 30.705 241 127 7 122 325 91 328 1.77e-20 92.0
Msa1455360 MtrunA17_Chr8g0354911 30.952 252 135 7 119 331 140 391 4.93e-19 87.8
Msa1455360 MtrunA17_Chr8g0384121 25.862 290 177 10 56 325 60 331 6.39e-18 84.7
Msa1455360 MtrunA17_Chr8g0380581 43.158 95 50 2 214 307 39 130 2.44e-17 82.0
Msa1455360 MtrunA17_Chr3g0080381 32.227 211 105 6 157 331 199 407 5.93e-17 81.6
Msa1455360 MtrunA17_Chr3g0129921 29.661 236 127 11 115 325 110 331 1.06e-16 80.9
Msa1455360 MtrunA17_Chr7g0271381 27.465 284 180 10 56 331 64 329 5.02e-15 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1455360 AT1G11580.1 45.614 342 163 8 3 331 4 335 3.20e-83 262
Msa1455360 AT1G11580.2 45.614 342 163 8 3 331 25 356 5.32e-83 262
Msa1455360 AT3G05620.1 34.106 302 157 10 62 331 38 329 4.79e-41 150
Msa1455360 AT3G43270.1 34.058 276 157 7 71 331 38 303 6.87e-40 147
Msa1455360 AT4G33220.1 38.367 245 113 8 118 331 64 301 3.65e-39 145
Msa1455360 AT1G11590.1 41.038 212 114 5 127 331 97 304 4.46e-39 145
Msa1455360 AT5G53370.1 35.366 246 141 6 102 331 120 363 4.03e-38 143
Msa1455360 AT5G53370.2 35.081 248 143 6 100 331 154 399 5.13e-38 143
Msa1455360 AT3G49220.2 35.652 230 132 5 117 331 193 421 9.69e-38 139
Msa1455360 AT4G03930.1 36.967 211 124 4 127 331 97 304 1.66e-37 140
Msa1455360 AT5G27870.1 32.589 224 132 4 117 325 116 335 2.02e-37 142
Msa1455360 AT2G45220.1 37.722 281 135 12 54 323 32 283 1.04e-36 138
Msa1455360 AT3G05610.1 32.900 231 134 5 118 331 118 344 1.46e-36 139
Msa1455360 AT3G49220.3 34.211 228 136 4 117 331 193 419 1.12e-35 137
Msa1455360 AT3G49220.1 34.211 228 136 4 117 331 148 374 1.31e-35 136
Msa1455360 AT4G02320.1 31.071 280 164 6 73 331 25 296 1.66e-35 135
Msa1455360 AT3G14310.1 35.385 260 129 7 109 331 113 370 1.33e-34 133
Msa1455360 AT2G26440.1 32.450 302 179 8 47 331 33 326 1.47e-34 132
Msa1455360 AT3G27980.1 40.782 179 96 4 156 331 106 277 1.82e-33 129
Msa1455360 AT3G59010.1 37.143 210 120 4 123 323 102 308 3.14e-32 126
Msa1455360 AT1G53830.1 33.793 290 144 8 79 331 87 365 3.45e-32 126
Msa1455360 AT4G02300.1 31.111 270 163 6 68 325 46 304 9.54e-32 125
Msa1455360 AT5G04960.1 35.000 220 129 3 122 331 131 346 2.98e-31 124
Msa1455360 AT5G51500.1 36.444 225 124 7 118 331 100 316 6.01e-31 122
Msa1455360 AT3G14300.1 34.146 287 155 9 69 331 473 749 1.42e-30 122
Msa1455360 AT4G33220.2 48.387 124 60 2 208 331 61 180 1.15e-29 117
Msa1455360 AT2G43050.1 38.571 210 108 7 123 323 98 295 1.60e-29 118
Msa1455360 AT1G11370.1 57.609 92 39 0 240 331 43 134 2.70e-29 114
Msa1455360 AT3G47400.1 36.283 226 127 7 118 331 150 370 2.24e-28 115
Msa1455360 AT5G49180.1 28.358 335 207 10 21 330 22 348 3.01e-28 115
Msa1455360 AT2G26450.1 32.110 218 121 5 122 322 174 381 7.27e-28 114
Msa1455360 AT5G51490.1 38.710 186 97 5 154 331 136 312 1.31e-27 113
Msa1455360 AT3G10710.1 30.213 235 145 4 108 331 118 344 5.11e-27 111
Msa1455360 AT1G23200.1 30.515 272 146 8 100 331 73 341 2.28e-26 109
Msa1455360 AT1G53840.1 30.303 297 168 11 63 331 84 369 3.34e-26 109
Msa1455360 AT4G15980.1 47.009 117 59 2 218 331 365 481 3.47e-26 109
Msa1455360 AT4G15980.2 47.009 117 59 2 218 331 375 491 3.92e-26 109
Msa1455360 AT3G60730.1 33.051 236 128 7 120 330 66 296 7.13e-25 105
Msa1455360 AT3G06830.1 30.508 236 143 8 116 330 111 346 1.50e-24 104
Msa1455360 AT4G33230.1 29.520 271 153 8 80 322 116 376 2.11e-24 104
Msa1455360 AT5G20860.2 34.951 206 115 7 126 323 112 306 7.56e-23 99.4
Msa1455360 AT4G00190.1 35.610 205 106 7 122 322 64 246 3.03e-22 97.4
Msa1455360 AT5G09760.1 29.210 291 171 9 56 325 49 325 1.50e-21 95.9
Msa1455360 AT5G09760.2 29.210 291 171 9 56 325 75 351 1.56e-21 95.9
Msa1455360 AT2G47550.1 33.478 230 124 8 122 322 99 328 2.30e-21 95.1
Msa1455360 AT1G44980.1 35.065 154 94 3 181 331 16 166 2.98e-21 91.3
Msa1455360 AT5G64640.1 28.521 284 166 11 65 325 106 375 4.67e-21 94.4
Msa1455360 AT4G02330.1 30.345 290 148 10 93 331 64 350 2.03e-20 92.4
Msa1455360 AT2G47030.1 39.394 132 65 3 212 331 239 367 9.54e-20 90.5
Msa1455360 AT2G47040.1 39.535 129 66 3 212 331 249 374 1.56e-18 87.0
Msa1455360 AT3G10720.2 30.952 252 133 9 119 331 145 394 6.65e-18 85.1
Msa1455360 AT1G02810.1 41.304 92 51 1 243 331 265 356 3.18e-16 79.7
Msa1455360 AT3G62170.1 35.606 132 65 2 220 331 236 367 4.51e-16 79.3
Msa1455360 AT5G04970.1 32.510 243 123 10 119 322 150 390 4.90e-16 79.3
Msa1455360 AT5G20860.1 35.256 156 86 5 126 273 112 260 1.29e-12 68.9

Find 67 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCCTTCCCAAAACTTTC+TGG 0.151586 tig0035767:+19032 Msa1455360:CDS
ACTTGTCCATGAACAGAATT+TGG 0.169985 tig0035767:+19386 Msa1455360:CDS
GTATGTTATCTATGTGAAAA+AGG 0.237847 tig0035767:+19804 Msa1455360:CDS
GAGGATTAACCAGAAAGTTT+TGG 0.241452 tig0035767:-19041 Msa1455360:intergenic
AAGCAAAGATAGGAGGCTTT+TGG 0.282961 tig0035767:+19669 Msa1455360:CDS
TCTTGAGATGAGTTGCAATA+AGG 0.288516 tig0035767:-19093 Msa1455360:intergenic
TACAAAGAGAACATAGAAAT+TGG 0.317816 tig0035767:+19832 Msa1455360:CDS
CTTCTCTAGGGCTGTTAATT+CGG 0.339882 tig0035767:-19330 Msa1455360:intergenic
TTCATTGATGAAACATTGAT+TGG 0.340270 tig0035767:+19625 Msa1455360:CDS
TGTAGTAGACTTGGTTAATA+AGG 0.343794 tig0035767:-19266 Msa1455360:intergenic
TCAATGTTTCATCAATGAAT+TGG 0.363111 tig0035767:-19621 Msa1455360:intergenic
CGAGTCCCAAATTCTGTTCA+TGG 0.391468 tig0035767:-19392 Msa1455360:intergenic
ACTTGCTTGGATGGATTAGA+AGG 0.410175 tig0035767:+19496 Msa1455360:CDS
CGTTATGGAAAATGACCTTC+AGG 0.413872 tig0035767:+19531 Msa1455360:CDS
CTTGAGATGAGTTGCAATAA+GGG 0.416823 tig0035767:-19092 Msa1455360:intergenic
AGGTACATCTCGGGTCGTTA+TGG 0.421631 tig0035767:+19516 Msa1455360:CDS
CTCAAAGCAATTTCTTCTCT+AGG 0.423277 tig0035767:-19343 Msa1455360:intergenic
CACGAACCATGCAACTTGCT+TGG 0.427409 tig0035767:+19483 Msa1455360:CDS
GAGTGACTGTGAACAACTAA+TGG 0.436097 tig0035767:+19363 Msa1455360:CDS
TACTTTGTCTTACCATTGTC+AGG 0.437385 tig0035767:-19784 Msa1455360:intergenic
AACCATGCAACTTGCTTGGA+TGG 0.446545 tig0035767:+19487 Msa1455360:CDS
GCTTGTCTAGCAAAGATTGT+TGG 0.453804 tig0035767:-19003 Msa1455360:intergenic
GTCCGCGGTTGGGGACATAA+AGG 0.463856 tig0035767:+19693 Msa1455360:CDS
CGTGGGTTACAAGCAAAGAT+AGG 0.464160 tig0035767:+19659 Msa1455360:CDS
CTTGTCCATGAACAGAATTT+GGG 0.465545 tig0035767:+19387 Msa1455360:CDS
AGCTGTGGTGAGGTGAAAGA+AGG 0.470426 tig0035767:-19125 Msa1455360:intergenic
AGTATCTCACGTCCCAACTT+TGG 0.472472 tig0035767:+19207 Msa1455360:CDS
CAAGACTGTGGCTGAGGCTG+TGG 0.477930 tig0035767:+19753 Msa1455360:CDS
ACAATAGTACATGCAAGCTT+TGG 0.482029 tig0035767:-19243 Msa1455360:intergenic
GGCAAATGTTGTGGTGGCTC+AGG 0.490604 tig0035767:+19714 Msa1455360:CDS
CAAAAGTTCAACCGTCGGTA+TGG 0.496118 tig0035767:+19948 Msa1455360:CDS
GTGAGGTGAAAGAAGGAGAT+TGG 0.505041 tig0035767:-19118 Msa1455360:intergenic
CAGCATGTTCACAGTAAACA+TGG 0.508287 tig0035767:-19150 Msa1455360:intergenic
CAAGTTCAAGACTGTGGCTG+AGG 0.510031 tig0035767:+19747 Msa1455360:CDS
TCAAAGCAATTTCTTCTCTA+GGG 0.514446 tig0035767:-19342 Msa1455360:intergenic
AGCTAGAGAAGATCTAGCTC+TGG 0.514776 tig0035767:-19563 Msa1455360:intergenic
GATTGGAGAATTTCCTTCGT+GGG 0.523944 tig0035767:+19642 Msa1455360:CDS
GATAACATTAGCTGTGTCCA+TGG 0.524887 tig0035767:-19302 Msa1455360:intergenic
TTGGATGTGTGTAGTAGACT+TGG 0.530040 tig0035767:-19275 Msa1455360:intergenic
CATATCGAGATGCACATACA+TGG 0.549934 tig0035767:+19446 Msa1455360:CDS
AATGTTGTGGTGGCTCAGGA+TGG 0.554448 tig0035767:+19718 Msa1455360:CDS
GATGCTCGTTGGTGATGGTA+TGG 0.559856 tig0035767:+19873 Msa1455360:CDS
GTGGTGGCTCAGGATGGGAG+TGG 0.566222 tig0035767:+19724 Msa1455360:CDS
TGATTGGAGAATTTCCTTCG+TGG 0.566291 tig0035767:+19641 Msa1455360:CDS
AATTGGTCACGATTCTCTTG+AGG 0.566371 tig0035767:-19604 Msa1455360:intergenic
TGGATTAGAAGGTACATCTC+GGG 0.575964 tig0035767:+19507 Msa1455360:CDS
TGCCTTTATGTCCCCAACCG+CGG 0.578312 tig0035767:-19695 Msa1455360:intergenic
ATGGATTAGAAGGTACATCT+CGG 0.583723 tig0035767:+19506 Msa1455360:CDS
CTCTGGATATCAAGTCCTGA+AGG 0.591651 tig0035767:-19546 Msa1455360:intergenic
ATGGATGCAACAATAATCAC+AGG 0.596549 tig0035767:+19892 Msa1455360:CDS
ACAGTAAACATGGGGAGCTG+TGG 0.609722 tig0035767:-19140 Msa1455360:intergenic
CATAAAGGCAAATGTTGTGG+TGG 0.610350 tig0035767:+19708 Msa1455360:CDS
AATGTGATGCTCGTTGGTGA+TGG 0.611460 tig0035767:+19868 Msa1455360:CDS
AAAACAAATGTGATGCTCGT+TGG 0.616382 tig0035767:+19862 Msa1455360:CDS
ATGTTGTGGTGGCTCAGGAT+GGG 0.620089 tig0035767:+19719 Msa1455360:CDS
ATCCATCCAAGCAAGTTGCA+TGG 0.627349 tig0035767:-19489 Msa1455360:intergenic
GTGGCATCTGCACCTGACAA+TGG 0.627680 tig0035767:+19772 Msa1455360:CDS
GGGTTACAAGCAAAGATAGG+AGG 0.637188 tig0035767:+19662 Msa1455360:CDS
AGCATGTTCACAGTAAACAT+GGG 0.638132 tig0035767:-19149 Msa1455360:intergenic
ACCTTCAAAAGTTCAACCGT+CGG 0.654500 tig0035767:+19943 Msa1455360:CDS
GGACATAAAGGCAAATGTTG+TGG 0.654505 tig0035767:+19705 Msa1455360:CDS
TTATGATAGCAACTAAAGAG+AGG 0.658604 tig0035767:-19060 Msa1455360:intergenic
TCTTTGCTTGTAACCCACGA+AGG 0.680540 tig0035767:-19655 Msa1455360:intergenic
AAGGGAAGGATCCATACCGA+CGG 0.689037 tig0035767:-19959 Msa1455360:intergenic
GCATGTTCACAGTAAACATG+GGG 0.697733 tig0035767:-19148 Msa1455360:intergenic
AAACATGGGGAGCTGTGGTG+AGG 0.712309 tig0035767:-19135 Msa1455360:intergenic
GAGTGGCAAGTTCAAGACTG+TGG 0.790308 tig0035767:+19741 Msa1455360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTTATCTATGTGAAAAA+GGG + tig0035767:19805-19824 Msa1455360:CDS 20.0%
!! TATGTTATCTATGTGAAAAA+GGG + tig0035767:19805-19824 Msa1455360:CDS 20.0%
! TCAATGTTTCATCAATGAAT+TGG - tig0035767:19624-19643 Msa1455360:intergenic 25.0%
! TTCATTGATGAAACATTGAT+TGG + tig0035767:19625-19644 Msa1455360:CDS 25.0%
! GTATGTTATCTATGTGAAAA+AGG + tig0035767:19804-19823 Msa1455360:CDS 25.0%
! TACAAAGAGAACATAGAAAT+TGG + tig0035767:19832-19851 Msa1455360:CDS 25.0%
!! GCAACTTAAATTTTATCGAT+GGG + tig0035767:19914-19933 Msa1455360:CDS 25.0%
! TCAATGTTTCATCAATGAAT+TGG - tig0035767:19624-19643 Msa1455360:intergenic 25.0%
! TTCATTGATGAAACATTGAT+TGG + tig0035767:19625-19644 Msa1455360:CDS 25.0%
! GTATGTTATCTATGTGAAAA+AGG + tig0035767:19804-19823 Msa1455360:CDS 25.0%
! TACAAAGAGAACATAGAAAT+TGG + tig0035767:19832-19851 Msa1455360:CDS 25.0%
!! GCAACTTAAATTTTATCGAT+GGG + tig0035767:19914-19933 Msa1455360:CDS 25.0%
! AGGATTAACCAGAAAGTTTT+GGG - tig0035767:19043-19062 Msa1455360:intergenic 30.0%
TTATGATAGCAACTAAAGAG+AGG - tig0035767:19063-19082 Msa1455360:intergenic 30.0%
! TGTAGTAGACTTGGTTAATA+AGG - tig0035767:19269-19288 Msa1455360:intergenic 30.0%
TCAAAGCAATTTCTTCTCTA+GGG - tig0035767:19345-19364 Msa1455360:intergenic 30.0%
!!! GAGCATCACATTTGTTTTTT+TGG - tig0035767:19860-19879 Msa1455360:intergenic 30.0%
! GGCAACTTAAATTTTATCGA+TGG + tig0035767:19913-19932 Msa1455360:CDS 30.0%
! AGGATTAACCAGAAAGTTTT+GGG - tig0035767:19043-19062 Msa1455360:intergenic 30.0%
TTATGATAGCAACTAAAGAG+AGG - tig0035767:19063-19082 Msa1455360:intergenic 30.0%
! TGTAGTAGACTTGGTTAATA+AGG - tig0035767:19269-19288 Msa1455360:intergenic 30.0%
TCAAAGCAATTTCTTCTCTA+GGG - tig0035767:19345-19364 Msa1455360:intergenic 30.0%
!!! GAGCATCACATTTGTTTTTT+TGG - tig0035767:19860-19879 Msa1455360:intergenic 30.0%
! GGCAACTTAAATTTTATCGA+TGG + tig0035767:19913-19932 Msa1455360:CDS 30.0%
!!! TAACCAGAAAGTTTTGGGAA+GGG - tig0035767:19038-19057 Msa1455360:intergenic 35.0%
!!! TTAACCAGAAAGTTTTGGGA+AGG - tig0035767:19039-19058 Msa1455360:intergenic 35.0%
! GAGGATTAACCAGAAAGTTT+TGG - tig0035767:19044-19063 Msa1455360:intergenic 35.0%
CTTGAGATGAGTTGCAATAA+GGG - tig0035767:19095-19114 Msa1455360:intergenic 35.0%
TCTTGAGATGAGTTGCAATA+AGG - tig0035767:19096-19115 Msa1455360:intergenic 35.0%
AGCATGTTCACAGTAAACAT+GGG - tig0035767:19152-19171 Msa1455360:intergenic 35.0%
ACAATAGTACATGCAAGCTT+TGG - tig0035767:19246-19265 Msa1455360:intergenic 35.0%
TACACACATCCAAAAAACCA+TGG + tig0035767:19285-19304 Msa1455360:CDS 35.0%
CTCAAAGCAATTTCTTCTCT+AGG - tig0035767:19346-19365 Msa1455360:intergenic 35.0%
ACTTGTCCATGAACAGAATT+TGG + tig0035767:19386-19405 Msa1455360:CDS 35.0%
CTTGTCCATGAACAGAATTT+GGG + tig0035767:19387-19406 Msa1455360:CDS 35.0%
!! ATGGATTAGAAGGTACATCT+CGG + tig0035767:19506-19525 Msa1455360:CDS 35.0%
TACTTTGTCTTACCATTGTC+AGG - tig0035767:19787-19806 Msa1455360:intergenic 35.0%
AAAACAAATGTGATGCTCGT+TGG + tig0035767:19862-19881 Msa1455360:CDS 35.0%
ATGGATGCAACAATAATCAC+AGG + tig0035767:19892-19911 Msa1455360:CDS 35.0%
!!! TAACCAGAAAGTTTTGGGAA+GGG - tig0035767:19038-19057 Msa1455360:intergenic 35.0%
!!! TTAACCAGAAAGTTTTGGGA+AGG - tig0035767:19039-19058 Msa1455360:intergenic 35.0%
! GAGGATTAACCAGAAAGTTT+TGG - tig0035767:19044-19063 Msa1455360:intergenic 35.0%
CTTGAGATGAGTTGCAATAA+GGG - tig0035767:19095-19114 Msa1455360:intergenic 35.0%
TCTTGAGATGAGTTGCAATA+AGG - tig0035767:19096-19115 Msa1455360:intergenic 35.0%
AGCATGTTCACAGTAAACAT+GGG - tig0035767:19152-19171 Msa1455360:intergenic 35.0%
ACAATAGTACATGCAAGCTT+TGG - tig0035767:19246-19265 Msa1455360:intergenic 35.0%
TACACACATCCAAAAAACCA+TGG + tig0035767:19285-19304 Msa1455360:CDS 35.0%
CTCAAAGCAATTTCTTCTCT+AGG - tig0035767:19346-19365 Msa1455360:intergenic 35.0%
ACTTGTCCATGAACAGAATT+TGG + tig0035767:19386-19405 Msa1455360:CDS 35.0%
CTTGTCCATGAACAGAATTT+GGG + tig0035767:19387-19406 Msa1455360:CDS 35.0%
!! ATGGATTAGAAGGTACATCT+CGG + tig0035767:19506-19525 Msa1455360:CDS 35.0%
TACTTTGTCTTACCATTGTC+AGG - tig0035767:19787-19806 Msa1455360:intergenic 35.0%
AAAACAAATGTGATGCTCGT+TGG + tig0035767:19862-19881 Msa1455360:CDS 35.0%
ATGGATGCAACAATAATCAC+AGG + tig0035767:19892-19911 Msa1455360:CDS 35.0%
GCTTGTCTAGCAAAGATTGT+TGG - tig0035767:19006-19025 None:intergenic 40.0%
!!! GTTTTGGGAAGGGATTTTCT+TGG - tig0035767:19028-19047 None:intergenic 40.0%
AATCCCTTCCCAAAACTTTC+TGG + tig0035767:19032-19051 Msa1455360:CDS 40.0%
GCATGTTCACAGTAAACATG+GGG - tig0035767:19151-19170 Msa1455360:intergenic 40.0%
CAGCATGTTCACAGTAAACA+TGG - tig0035767:19153-19172 Msa1455360:intergenic 40.0%
! CTTTTGCAGTGACCAAAGTT+GGG - tig0035767:19222-19241 Msa1455360:intergenic 40.0%
! TCTTTTGCAGTGACCAAAGT+TGG - tig0035767:19223-19242 Msa1455360:intergenic 40.0%
TTGGATGTGTGTAGTAGACT+TGG - tig0035767:19278-19297 Msa1455360:intergenic 40.0%
!!! TAGCTGTGTCCATGGTTTTT+TGG - tig0035767:19297-19316 Msa1455360:intergenic 40.0%
GATAACATTAGCTGTGTCCA+TGG - tig0035767:19305-19324 Msa1455360:intergenic 40.0%
!! CTTCTCTAGGGCTGTTAATT+CGG - tig0035767:19333-19352 Msa1455360:intergenic 40.0%
GAGTGACTGTGAACAACTAA+TGG + tig0035767:19363-19382 Msa1455360:CDS 40.0%
CATATCGAGATGCACATACA+TGG + tig0035767:19446-19465 Msa1455360:CDS 40.0%
!! ACTTGCTTGGATGGATTAGA+AGG + tig0035767:19496-19515 Msa1455360:CDS 40.0%
! TGGATTAGAAGGTACATCTC+GGG + tig0035767:19507-19526 Msa1455360:CDS 40.0%
CGTTATGGAAAATGACCTTC+AGG + tig0035767:19531-19550 Msa1455360:CDS 40.0%
AATTGGTCACGATTCTCTTG+AGG - tig0035767:19607-19626 Msa1455360:intergenic 40.0%
TGATTGGAGAATTTCCTTCG+TGG + tig0035767:19641-19660 Msa1455360:CDS 40.0%
GATTGGAGAATTTCCTTCGT+GGG + tig0035767:19642-19661 Msa1455360:CDS 40.0%
! AAGCAAAGATAGGAGGCTTT+TGG + tig0035767:19669-19688 Msa1455360:CDS 40.0%
GGACATAAAGGCAAATGTTG+TGG + tig0035767:19705-19724 Msa1455360:CDS 40.0%
CATAAAGGCAAATGTTGTGG+TGG + tig0035767:19708-19727 Msa1455360:CDS 40.0%
ACCTTCAAAAGTTCAACCGT+CGG + tig0035767:19943-19962 Msa1455360:CDS 40.0%
GCTTGTCTAGCAAAGATTGT+TGG - tig0035767:19006-19025 Msa1455360:intergenic 40.0%
!!! GTTTTGGGAAGGGATTTTCT+TGG - tig0035767:19028-19047 Msa1455360:intergenic 40.0%
AATCCCTTCCCAAAACTTTC+TGG + tig0035767:19032-19051 Msa1455360:CDS 40.0%
GCATGTTCACAGTAAACATG+GGG - tig0035767:19151-19170 Msa1455360:intergenic 40.0%
CAGCATGTTCACAGTAAACA+TGG - tig0035767:19153-19172 Msa1455360:intergenic 40.0%
! CTTTTGCAGTGACCAAAGTT+GGG - tig0035767:19222-19241 Msa1455360:intergenic 40.0%
! TCTTTTGCAGTGACCAAAGT+TGG - tig0035767:19223-19242 Msa1455360:intergenic 40.0%
TTGGATGTGTGTAGTAGACT+TGG - tig0035767:19278-19297 Msa1455360:intergenic 40.0%
!!! TAGCTGTGTCCATGGTTTTT+TGG - tig0035767:19297-19316 Msa1455360:intergenic 40.0%
GATAACATTAGCTGTGTCCA+TGG - tig0035767:19305-19324 Msa1455360:intergenic 40.0%
!! CTTCTCTAGGGCTGTTAATT+CGG - tig0035767:19333-19352 Msa1455360:intergenic 40.0%
GAGTGACTGTGAACAACTAA+TGG + tig0035767:19363-19382 Msa1455360:CDS 40.0%
CATATCGAGATGCACATACA+TGG + tig0035767:19446-19465 Msa1455360:CDS 40.0%
!! ACTTGCTTGGATGGATTAGA+AGG + tig0035767:19496-19515 Msa1455360:CDS 40.0%
! TGGATTAGAAGGTACATCTC+GGG + tig0035767:19507-19526 Msa1455360:CDS 40.0%
CGTTATGGAAAATGACCTTC+AGG + tig0035767:19531-19550 Msa1455360:CDS 40.0%
AATTGGTCACGATTCTCTTG+AGG - tig0035767:19607-19626 Msa1455360:intergenic 40.0%
TGATTGGAGAATTTCCTTCG+TGG + tig0035767:19641-19660 Msa1455360:CDS 40.0%
GATTGGAGAATTTCCTTCGT+GGG + tig0035767:19642-19661 Msa1455360:CDS 40.0%
! AAGCAAAGATAGGAGGCTTT+TGG + tig0035767:19669-19688 Msa1455360:CDS 40.0%
GGACATAAAGGCAAATGTTG+TGG + tig0035767:19705-19724 Msa1455360:CDS 40.0%
CATAAAGGCAAATGTTGTGG+TGG + tig0035767:19708-19727 Msa1455360:CDS 40.0%
ACCTTCAAAAGTTCAACCGT+CGG + tig0035767:19943-19962 Msa1455360:CDS 40.0%
GTGAGGTGAAAGAAGGAGAT+TGG - tig0035767:19121-19140 Msa1455360:intergenic 45.0%
AGTATCTCACGTCCCAACTT+TGG + tig0035767:19207-19226 Msa1455360:CDS 45.0%
CGAGTCCCAAATTCTGTTCA+TGG - tig0035767:19395-19414 Msa1455360:intergenic 45.0%
! AACCATGCAACTTGCTTGGA+TGG + tig0035767:19487-19506 Msa1455360:CDS 45.0%
ATCCATCCAAGCAAGTTGCA+TGG - tig0035767:19492-19511 Msa1455360:intergenic 45.0%
CTCTGGATATCAAGTCCTGA+AGG - tig0035767:19549-19568 Msa1455360:intergenic 45.0%
! AGCTAGAGAAGATCTAGCTC+TGG - tig0035767:19566-19585 Msa1455360:intergenic 45.0%
TCTTTGCTTGTAACCCACGA+AGG - tig0035767:19658-19677 Msa1455360:intergenic 45.0%
! CGTGGGTTACAAGCAAAGAT+AGG + tig0035767:19659-19678 Msa1455360:CDS 45.0%
GGGTTACAAGCAAAGATAGG+AGG + tig0035767:19662-19681 Msa1455360:CDS 45.0%
! AATGTGATGCTCGTTGGTGA+TGG + tig0035767:19868-19887 Msa1455360:CDS 45.0%
! ACCGACGGTTGAACTTTTGA+AGG - tig0035767:19947-19966 Msa1455360:intergenic 45.0%
CAAAAGTTCAACCGTCGGTA+TGG + tig0035767:19948-19967 Msa1455360:CDS 45.0%
GTGAGGTGAAAGAAGGAGAT+TGG - tig0035767:19121-19140 Msa1455360:intergenic 45.0%
AGTATCTCACGTCCCAACTT+TGG + tig0035767:19207-19226 Msa1455360:CDS 45.0%
CGAGTCCCAAATTCTGTTCA+TGG - tig0035767:19395-19414 Msa1455360:intergenic 45.0%
! AACCATGCAACTTGCTTGGA+TGG + tig0035767:19487-19506 Msa1455360:CDS 45.0%
ATCCATCCAAGCAAGTTGCA+TGG - tig0035767:19492-19511 Msa1455360:intergenic 45.0%
CTCTGGATATCAAGTCCTGA+AGG - tig0035767:19549-19568 Msa1455360:intergenic 45.0%
! AGCTAGAGAAGATCTAGCTC+TGG - tig0035767:19566-19585 Msa1455360:intergenic 45.0%
TCTTTGCTTGTAACCCACGA+AGG - tig0035767:19658-19677 Msa1455360:intergenic 45.0%
! CGTGGGTTACAAGCAAAGAT+AGG + tig0035767:19659-19678 Msa1455360:CDS 45.0%
GGGTTACAAGCAAAGATAGG+AGG + tig0035767:19662-19681 Msa1455360:CDS 45.0%
! AATGTGATGCTCGTTGGTGA+TGG + tig0035767:19868-19887 Msa1455360:CDS 45.0%
! ACCGACGGTTGAACTTTTGA+AGG - tig0035767:19947-19966 Msa1455360:intergenic 45.0%
CAAAAGTTCAACCGTCGGTA+TGG + tig0035767:19948-19967 Msa1455360:CDS 45.0%
AGCTGTGGTGAGGTGAAAGA+AGG - tig0035767:19128-19147 Msa1455360:intergenic 50.0%
ACAGTAAACATGGGGAGCTG+TGG - tig0035767:19143-19162 Msa1455360:intergenic 50.0%
! CACGAACCATGCAACTTGCT+TGG + tig0035767:19483-19502 Msa1455360:CDS 50.0%
AGGTACATCTCGGGTCGTTA+TGG + tig0035767:19516-19535 Msa1455360:CDS 50.0%
AATGTTGTGGTGGCTCAGGA+TGG + tig0035767:19718-19737 Msa1455360:CDS 50.0%
ATGTTGTGGTGGCTCAGGAT+GGG + tig0035767:19719-19738 Msa1455360:CDS 50.0%
GAGTGGCAAGTTCAAGACTG+TGG + tig0035767:19741-19760 Msa1455360:CDS 50.0%
CAAGTTCAAGACTGTGGCTG+AGG + tig0035767:19747-19766 Msa1455360:CDS 50.0%
!! GATGCTCGTTGGTGATGGTA+TGG + tig0035767:19873-19892 Msa1455360:CDS 50.0%
AAGGGAAGGATCCATACCGA+CGG - tig0035767:19962-19981 Msa1455360:intergenic 50.0%
AGCTGTGGTGAGGTGAAAGA+AGG - tig0035767:19128-19147 Msa1455360:intergenic 50.0%
ACAGTAAACATGGGGAGCTG+TGG - tig0035767:19143-19162 Msa1455360:intergenic 50.0%
! CACGAACCATGCAACTTGCT+TGG + tig0035767:19483-19502 Msa1455360:CDS 50.0%
AGGTACATCTCGGGTCGTTA+TGG + tig0035767:19516-19535 Msa1455360:CDS 50.0%
AATGTTGTGGTGGCTCAGGA+TGG + tig0035767:19718-19737 Msa1455360:CDS 50.0%
ATGTTGTGGTGGCTCAGGAT+GGG + tig0035767:19719-19738 Msa1455360:CDS 50.0%
GAGTGGCAAGTTCAAGACTG+TGG + tig0035767:19741-19760 Msa1455360:CDS 50.0%
CAAGTTCAAGACTGTGGCTG+AGG + tig0035767:19747-19766 Msa1455360:CDS 50.0%
!! GATGCTCGTTGGTGATGGTA+TGG + tig0035767:19873-19892 Msa1455360:CDS 50.0%
AAGGGAAGGATCCATACCGA+CGG - tig0035767:19962-19981 Msa1455360:intergenic 50.0%
AAACATGGGGAGCTGTGGTG+AGG - tig0035767:19138-19157 Msa1455360:intergenic 55.0%
!!! TAGGAGGCTTTTGGAGTCCG+CGG + tig0035767:19678-19697 Msa1455360:CDS 55.0%
TGCCTTTATGTCCCCAACCG+CGG - tig0035767:19698-19717 Msa1455360:intergenic 55.0%
GGCAAATGTTGTGGTGGCTC+AGG + tig0035767:19714-19733 Msa1455360:CDS 55.0%
GTGGCATCTGCACCTGACAA+TGG + tig0035767:19772-19791 Msa1455360:CDS 55.0%
AAACATGGGGAGCTGTGGTG+AGG - tig0035767:19138-19157 Msa1455360:intergenic 55.0%
!!! TAGGAGGCTTTTGGAGTCCG+CGG + tig0035767:19678-19697 Msa1455360:CDS 55.0%
TGCCTTTATGTCCCCAACCG+CGG - tig0035767:19698-19717 Msa1455360:intergenic 55.0%
GGCAAATGTTGTGGTGGCTC+AGG + tig0035767:19714-19733 Msa1455360:CDS 55.0%
GTGGCATCTGCACCTGACAA+TGG + tig0035767:19772-19791 Msa1455360:CDS 55.0%
!!! AGGCTTTTGGAGTCCGCGGT+TGG + tig0035767:19682-19701 Msa1455360:CDS 60.0%
!!! GGCTTTTGGAGTCCGCGGTT+GGG + tig0035767:19683-19702 Msa1455360:CDS 60.0%
!!! GCTTTTGGAGTCCGCGGTTG+GGG + tig0035767:19684-19703 Msa1455360:CDS 60.0%
GTCCGCGGTTGGGGACATAA+AGG + tig0035767:19693-19712 Msa1455360:CDS 60.0%
CAAGACTGTGGCTGAGGCTG+TGG + tig0035767:19753-19772 Msa1455360:CDS 60.0%
!!! AGGCTTTTGGAGTCCGCGGT+TGG + tig0035767:19682-19701 Msa1455360:CDS 60.0%
!!! GGCTTTTGGAGTCCGCGGTT+GGG + tig0035767:19683-19702 Msa1455360:CDS 60.0%
!!! GCTTTTGGAGTCCGCGGTTG+GGG + tig0035767:19684-19703 Msa1455360:CDS 60.0%
GTCCGCGGTTGGGGACATAA+AGG + tig0035767:19693-19712 Msa1455360:CDS 60.0%
CAAGACTGTGGCTGAGGCTG+TGG + tig0035767:19753-19772 Msa1455360:CDS 60.0%
GTGGTGGCTCAGGATGGGAG+TGG + tig0035767:19724-19743 Msa1455360:CDS 65.0%
GTGGTGGCTCAGGATGGGAG+TGG + tig0035767:19724-19743 Msa1455360:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0035767 gene 18995 19990 18995 ID=Msa1455360;Name=Msa1455360
tig0035767 mRNA 18995 19990 18995 ID=Msa1455360-mRNA-1;Parent=Msa1455360;Name=Msa1455360-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|-1|0|1|-1|1|1|0|331
tig0035767 exon 18995 19990 18995 ID=Msa1455360-mRNA-1:exon:20234;Parent=Msa1455360-mRNA-1
tig0035767 CDS 18995 19990 18995 ID=Msa1455360-mRNA-1:cds;Parent=Msa1455360-mRNA-1
Gene Sequence

>Msa1455360

ATGGCTAGCCAACAATCTTTGCTAGACAAGCCAAGAAAATCCCTTCCCAAAACTTTCTGGTTAATCCTCTCTTTAGTTGCTATCATAAGCTCATCAGCCCTTATTGCAACTCATCTCAAGAAACCAATCTCCTTCTTTCACCTCACCACAGCTCCCCATGTTTACTGTGAACATGCTGTCGATGCAAAATCGTGTTTAGCTCATGTATCAGAAGTATCTCACGTCCCAACTTTGGTCACTGCAAAAGACCAAAGCTTGCATGTACTATTGTCCTTATTAACCAAGTCTACTACACACATCCAAAAAACCATGGACACAGCTAATGTTATCAAACGCCGAATTAACAGCCCTAGAGAAGAAATTGCTTTGAGTGACTGTGAACAACTAATGGACTTGTCCATGAACAGAATTTGGGACTCGATGTTAAAGCTAACAAAAAATAATATTGACTCATATCGAGATGCACATACATGGCTAAGCAGTGTGCTCACGAACCATGCAACTTGCTTGGATGGATTAGAAGGTACATCTCGGGTCGTTATGGAAAATGACCTTCAGGACTTGATATCCAGAGCTAGATCTTCTCTAGCTGTGTTTCTTGTTGTTTTTCCTCAAGAGAATCGTGACCAATTCATTGATGAAACATTGATTGGAGAATTTCCTTCGTGGGTTACAAGCAAAGATAGGAGGCTTTTGGAGTCCGCGGTTGGGGACATAAAGGCAAATGTTGTGGTGGCTCAGGATGGGAGTGGCAAGTTCAAGACTGTGGCTGAGGCTGTGGCATCTGCACCTGACAATGGTAAGACAAAGTATGTTATCTATGTGAAAAAGGGAACATACAAAGAGAACATAGAAATTGGTTCCAAAAAAACAAATGTGATGCTCGTTGGTGATGGTATGGATGCAACAATAATCACAGGCAACTTAAATTTTATCGATGGGACAACAACCTTCAAAAGTTCAACCGTCGGTATGGATCCTTCCCTTTTTTTGTAA

Protein sequence

>Msa1455360

MASQQSLLDKPRKSLPKTFWLILSLVAIISSSALIATHLKKPISFFHLTTAPHVYCEHAVDAKSCLAHVSEVSHVPTLVTAKDQSLHVLLSLLTKSTTHIQKTMDTANVIKRRINSPREEIALSDCEQLMDLSMNRIWDSMLKLTKNNIDSYRDAHTWLSSVLTNHATCLDGLEGTSRVVMENDLQDLISRARSSLAVFLVVFPQENRDQFIDETLIGEFPSWVTSKDRRLLESAVGDIKANVVVAQDGSGKFKTVAEAVASAPDNGKTKYVIYVKKGTYKENIEIGSKKTNVMLVGDGMDATIITGNLNFIDGTTTFKSSTVGMDPSLFL*