AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0549170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549170 MtrunA17_Chr4g0033291 82.421 347 30 6 1 334 1 329 0.0 539
Msa0549170 MtrunA17_Chr4g0033281 82.405 341 32 4 1 331 1 323 0.0 529
Msa0549170 MtrunA17_Chr4g0033391 79.883 343 32 6 1 331 1 318 0.0 526
Msa0549170 MtrunA17_Chr2g0307131 61.497 374 84 8 1 333 1 355 2.77e-141 404
Msa0549170 MtrunA17_Chr2g0307141 60.267 375 93 7 1 334 1 360 1.52e-131 379
Msa0549170 MtrunA17_Chr6g0468491 63.554 332 83 10 23 334 1 314 8.91e-130 373
Msa0549170 MtrunA17_Chr4g0054581 52.208 385 127 8 1 334 1 379 2.85e-105 313
Msa0549170 MtrunA17_Chr6g0468461 53.890 347 99 11 1 317 1 316 4.80e-101 301
Msa0549170 MtrunA17_Chr7g0225901 55.034 298 65 7 23 309 1 240 4.52e-96 285
Msa0549170 MtrunA17_Chr4g0054621 47.411 367 135 11 1 334 1 342 3.07e-89 271
Msa0549170 MtrunA17_Chr5g0400621 43.976 332 153 10 17 333 20 333 1.36e-64 207
Msa0549170 MtrunA17_Chr5g0400661 35.143 350 172 9 13 329 7 334 2.60e-44 154
Msa0549170 MtrunA17_Chr4g0002801 41.667 204 98 6 148 330 128 331 8.87e-42 148
Msa0549170 MtrunA17_Chr5g0400641 52.500 160 58 5 170 315 1 156 1.99e-41 142
Msa0549170 MtrunA17_Chr8g0336681 37.449 243 127 4 105 330 102 336 1.57e-40 145
Msa0549170 MtrunA17_Chr4g0054551 35.741 263 137 6 93 328 67 324 1.64e-40 144
Msa0549170 MtrunA17_Chr2g0280161 44.022 184 90 2 159 331 171 352 1.69e-40 145
Msa0549170 MtrunA17_Chr2g0333641 36.398 261 144 7 78 328 58 306 5.01e-40 143
Msa0549170 MtrunA17_Chr4g0054561 35.361 263 138 6 93 328 67 324 2.31e-39 141
Msa0549170 MtrunA17_Chr4g0054571 35.714 336 165 14 13 331 30 331 5.15e-39 140
Msa0549170 MtrunA17_Chr4g0049331 39.614 207 103 3 141 331 109 309 6.08e-39 140
Msa0549170 MtrunA17_Chr2g0333621 36.515 241 134 4 105 333 82 315 9.24e-39 139
Msa0549170 MtrunA17_Chr4g0002781 36.614 254 125 7 98 330 112 350 2.73e-38 139
Msa0549170 MtrunA17_Chr2g0333541 43.850 187 89 5 156 327 81 266 4.22e-37 134
Msa0549170 MtrunA17_Chr5g0400671 35.749 207 105 4 142 329 126 323 5.98e-36 132
Msa0549170 MtrunA17_Chr7g0249811 37.981 208 121 4 126 330 127 329 2.80e-33 125
Msa0549170 MtrunA17_Chr2g0333611 38.421 190 105 5 153 331 29 217 3.64e-33 122
Msa0549170 MtrunA17_Chr4g0002831 38.037 163 94 5 169 328 45 203 7.43e-27 105
Msa0549170 MtrunA17_Chr7g0233441 37.931 145 78 2 190 328 57 195 5.90e-24 97.4
Msa0549170 MtrunA17_Chr4g0002851 39.568 139 76 2 190 328 65 195 4.69e-23 94.7
Msa0549170 MtrunA17_Chr8g0366751 29.940 167 86 2 158 293 443 609 1.20e-15 77.8
Msa0549170 MtrunA17_Chr1g0185621 31.944 144 76 3 167 290 475 616 7.28e-15 75.5
Msa0549170 MtrunA17_Chr8g0346151 29.333 150 77 4 141 266 248 392 3.46e-14 73.2
Msa0549170 MtrunA17_Chr8g0346161 29.630 162 99 4 139 286 263 423 6.53e-14 72.4
Msa0549170 MtrunA17_Chr5g0411341 30.539 167 91 4 152 293 474 640 1.02e-13 72.0
Msa0549170 MtrunA17_Chr7g0275821 30.519 154 101 2 163 310 244 397 1.02e-13 71.6
Msa0549170 MtrunA17_Chr3g0131691 28.488 172 102 3 169 320 300 470 1.23e-12 68.6
Msa0549170 MtrunA17_Chr7g0260841 36.082 97 52 1 134 220 312 408 3.12e-12 67.4
Msa0549170 MtrunA17_Chr8g0365711 26.036 169 102 4 157 306 234 398 7.29e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549170 AT4G37850.2 41.872 203 97 7 147 331 128 327 3.29e-37 136
Msa0549170 AT4G37850.1 41.872 203 97 7 147 331 128 327 3.29e-37 136
Msa0549170 AT2G22760.1 38.298 188 102 4 156 329 108 295 1.92e-35 130
Msa0549170 AT2G22750.3 33.333 360 175 14 8 332 4 333 8.38e-35 130
Msa0549170 AT2G22750.5 32.861 353 173 13 15 332 6 329 1.85e-34 129
Msa0549170 AT2G22750.2 36.929 241 114 6 125 332 70 305 9.14e-34 126
Msa0549170 AT2G22750.4 33.333 360 174 15 8 332 4 332 1.17e-33 127
Msa0549170 AT2G22750.1 36.929 241 113 7 125 332 70 304 1.36e-32 123
Msa0549170 AT2G22770.1 37.766 188 92 2 166 328 131 318 1.11e-30 118
Msa0549170 AT2G22760.2 38.323 167 90 3 156 309 108 274 1.51e-29 114
Msa0549170 AT5G46760.1 32.161 199 96 8 152 313 396 592 1.55e-18 87.0
Msa0549170 AT4G17880.1 30.705 241 125 9 110 311 350 587 2.18e-17 83.6
Msa0549170 AT1G32640.1 32.075 159 81 3 159 293 434 589 1.48e-15 78.2
Msa0549170 AT2G46510.1 37.931 116 54 3 159 264 377 484 1.06e-14 75.5
Msa0549170 AT1G01260.1 25.974 231 135 5 91 306 351 560 1.75e-13 71.6
Msa0549170 AT1G01260.2 25.974 231 135 5 91 306 351 560 1.75e-13 71.6
Msa0549170 AT1G01260.3 25.974 231 135 5 91 306 351 560 1.75e-13 71.6
Msa0549170 AT4G09820.1 26.728 217 136 6 118 332 321 516 3.07e-13 70.9
Msa0549170 AT4G16430.1 46.575 73 35 1 152 220 301 373 1.27e-12 68.9
Msa0549170 AT5G46830.1 54.839 62 24 1 163 220 335 396 4.20e-12 67.4
Msa0549170 AT5G41315.3 29.348 184 90 7 158 305 437 616 9.29e-12 66.6
Msa0549170 AT5G41315.1 29.348 184 90 7 158 305 432 611 9.69e-12 66.2
Msa0549170 AT5G41315.2 29.348 184 90 7 158 305 440 619 1.04e-11 66.2
Msa0549170 AT3G26744.1 29.697 165 96 2 168 312 308 472 2.42e-11 65.1
Msa0549170 AT3G26744.4 29.697 165 96 2 168 312 308 472 2.42e-11 65.1
Msa0549170 AT3G26744.2 29.697 165 96 2 168 312 308 472 2.42e-11 65.1

Find 49 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGTTCCTAACCTTAAAA+AGG 0.267726 4_1:-44068712 Msa0549170:intron
CAGCAGCTGGTTATCTGATT+TGG 0.268145 4_1:-44069564 Msa0549170:intron
TCAAGAACAAAACAAACAAT+TGG 0.334442 4_1:-44069114 Msa0549170:CDS
CAAGTGGAAGCAAGAGTGTT+AGG 0.334987 4_1:-44067830 Msa0549170:CDS
GGGGCTTCTAGTTAAAATTA+TGG 0.343764 4_1:-44067768 Msa0549170:CDS
GATGGTGATGGAGAAATATT+TGG 0.350142 4_1:+44069008 None:intergenic
CTGCAAGAGCAATGAAGCTT+TGG 0.357341 4_1:+44068736 None:intergenic
ATCAGTGTCTCCAACCGAAT+TGG 0.364748 4_1:-44068901 Msa0549170:CDS
CAAGAACAAAACAAACAATT+GGG 0.390107 4_1:-44069113 Msa0549170:CDS
CATCTGCATCAAGAAAATTA+AGG 0.394973 4_1:+44069174 None:intergenic
TTGATGATACTTTCATTGCT+TGG 0.395476 4_1:+44069588 None:intergenic
ATCGCTGCATATGCATGGTT+TGG 0.407010 4_1:+44067907 None:intergenic
ACTCTTGCTTCCACTTGAAA+TGG 0.409697 4_1:+44067836 None:intergenic
AGAAACCTCAAAAGGGTCAT+TGG 0.411401 4_1:-44068859 Msa0549170:CDS
AATAACAGTGTCTTACCCTT+TGG 0.416567 4_1:-44067713 Msa0549170:CDS
GCCCCTTGTGCTCCTTGCAT+TGG 0.417499 4_1:+44067786 None:intergenic
CACTCAACAGAAACCTCAAA+AGG 0.444007 4_1:-44068867 Msa0549170:CDS
TAGGAAAACAAGTGTTGATT+CGG 0.449123 4_1:-44067811 Msa0549170:CDS
TGCAAGAGCAATGAAGCTTT+GGG 0.460124 4_1:+44068737 None:intergenic
AAAGAGGAGTTAGATGGTGA+TGG 0.464747 4_1:+44068996 None:intergenic
GATAACATTGAATGTGTTGT+TGG 0.466089 4_1:-44067863 Msa0549170:CDS
TGACTTGCTGAGATCATTTG+TGG 0.473303 4_1:+44069082 None:intergenic
AACTGAAAAGAGGAGTTAGA+TGG 0.496291 4_1:+44068990 None:intergenic
GCTGAGATCATTTGTGGAAG+TGG 0.497595 4_1:+44069088 None:intergenic
AGCAAAAGGCCTCGTGCTCA+TGG 0.502148 4_1:-44068804 Msa0549170:CDS
GGTAGCTACCTGAGCAATGA+TGG 0.511294 4_1:+44067670 None:intergenic
AAGGCCTCGTGCTCATGGTA+AGG 0.535577 4_1:-44068799 Msa0549170:CDS
TTCTTGATGCAGATGTGGGA+GGG 0.544131 4_1:-44069166 Msa0549170:CDS
CGACATTACCATCATTGCTC+AGG 0.544333 4_1:-44067678 Msa0549170:intron
GTTGATTCGGTTCCAATGCA+AGG 0.545125 4_1:-44067798 Msa0549170:CDS
GTTCCAATGCAAGGAGCACA+AGG 0.563766 4_1:-44067789 Msa0549170:CDS
TCTTCATCGCTGCATATGCA+TGG 0.570607 4_1:+44067902 None:intergenic
AAGTATCATCAATCAGCAGC+TGG 0.573007 4_1:-44069577 Msa0549170:CDS
TTTCTTGATGCAGATGTGGG+AGG 0.583981 4_1:-44069167 Msa0549170:CDS
TGGTATTTGAAACTGAAAAG+AGG 0.585974 4_1:+44068980 None:intergenic
ACTCAACAGAAACCTCAAAA+GGG 0.587077 4_1:-44068866 Msa0549170:CDS
GTCGAGTGTAGAATCTCCAA+AGG 0.590011 4_1:+44067697 None:intergenic
TCCAATGCAAGGAGCACAAG+GGG 0.595381 4_1:-44067787 Msa0549170:CDS
AGGGTACAACTTGAGCATAA+AGG 0.600355 4_1:-44067490 Msa0549170:CDS
TGTTGGTTCACCATTTCAAG+TGG 0.611743 4_1:-44067846 Msa0549170:CDS
TCATGGTAAGGATCACATCA+TGG 0.611981 4_1:-44068787 Msa0549170:CDS
TCGAGTGTAGAATCTCCAAA+GGG 0.615421 4_1:+44067698 None:intergenic
CTGCATATGCATGGTTTGGT+CGG 0.617639 4_1:+44067911 None:intergenic
CGAATACAATATATTTGCTG+AGG 0.624364 4_1:-44069204 Msa0549170:CDS
TGAAGATTCGTCATCATGTG+AGG 0.642706 4_1:-44067885 Msa0549170:CDS
TTCCAATGCAAGGAGCACAA+GGG 0.644827 4_1:-44067788 Msa0549170:CDS
AAGAACAAAACAAACAATTG+GGG 0.650416 4_1:-44069112 Msa0549170:CDS
ACTTGTGAAGAACGTACGCA+TGG 0.661373 4_1:-44067466 Msa0549170:CDS
TGATCCTTACCATGAGCACG+AGG 0.705697 4_1:+44068795 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTATATTTTGAAATATTT+AGG - chr4_1:44068519-44068538 Msa0549170:intron 10.0%
!!! TTTATTATTTTTCTTTTAGA+TGG - chr4_1:44069031-44069050 Msa0549170:CDS 10.0%
!!! ATCATATATTATTTTATAGT+TGG - chr4_1:44069528-44069547 Msa0549170:intron 10.0%
!!! TCATATATTATTTTATAGTT+GGG - chr4_1:44069529-44069548 Msa0549170:intron 10.0%
!!! GTTTATATTTTGAAATATTT+AGG - chr4_1:44068519-44068538 Msa0549170:intron 10.0%
!!! TTTATTATTTTTCTTTTAGA+TGG - chr4_1:44069031-44069050 Msa0549170:CDS 10.0%
!!! ATCATATATTATTTTATAGT+TGG - chr4_1:44069528-44069547 Msa0549170:intron 10.0%
!!! TCATATATTATTTTATAGTT+GGG - chr4_1:44069529-44069548 Msa0549170:intron 10.0%
!!! CTTACATTTAACTTAATTAA+TGG + chr4_1:44067585-44067604 None:intergenic 15.0%
!!! AGACAAATCAATTTTATTTA+AGG - chr4_1:44068973-44068992 Msa0549170:CDS 15.0%
!! ACATTAAAAAAAATTGTGAT+AGG + chr4_1:44069399-44069418 None:intergenic 15.0%
!! ATGATTAATATTAGATACAA+GGG + chr4_1:44069513-44069532 None:intergenic 15.0%
!! TATGATTAATATTAGATACA+AGG + chr4_1:44069514-44069533 None:intergenic 15.0%
!!! CTTACATTTAACTTAATTAA+TGG + chr4_1:44067585-44067604 None:intergenic 15.0%
!!! AGACAAATCAATTTTATTTA+AGG - chr4_1:44068973-44068992 Msa0549170:CDS 15.0%
!! ACATTAAAAAAAATTGTGAT+AGG + chr4_1:44069399-44069418 None:intergenic 15.0%
!! ATGATTAATATTAGATACAA+GGG + chr4_1:44069513-44069532 None:intergenic 15.0%
!! TATGATTAATATTAGATACA+AGG + chr4_1:44069514-44069533 None:intergenic 15.0%
!!! GTTTATTCTTATTTAAGGTT+AGG + chr4_1:44067668-44067687 None:intergenic 20.0%
!!! CCTATGTTTATTCTTATTTA+AGG + chr4_1:44067673-44067692 None:intergenic 20.0%
!! CCTTAAATAAGAATAAACAT+AGG - chr4_1:44067670-44067689 Msa0549170:intron 20.0%
!! AAAAAAAAATCTTGAAGACT+TGG + chr4_1:44067715-44067734 None:intergenic 20.0%
!!! TTTTTTCAGACAATAATTGA+TGG - chr4_1:44067731-44067750 Msa0549170:CDS 20.0%
!!! GAACTTTTATTTTTTTTTGC+AGG - chr4_1:44067811-44067830 Msa0549170:CDS 20.0%
!!! TTATTTTTTTTTGCAGGAAA+TGG - chr4_1:44067817-44067836 Msa0549170:CDS 20.0%
!!! TTACATAACATACCTTTTTA+AGG + chr4_1:44068348-44068367 None:intergenic 20.0%
!! TATACATGACATATATGAAT+TGG + chr4_1:44068448-44068467 None:intergenic 20.0%
!! ATACTTTGATCATATGTAAA+GGG + chr4_1:44068578-44068597 None:intergenic 20.0%
!! TGTATATTGTTTGTGTATAT+AGG + chr4_1:44068797-44068816 None:intergenic 20.0%
!! ATTTGACATATAATTATGAG+CGG - chr4_1:44068863-44068882 Msa0549170:CDS 20.0%
!!! GTTTATTCTTATTTAAGGTT+AGG + chr4_1:44067668-44067687 None:intergenic 20.0%
!!! CCTATGTTTATTCTTATTTA+AGG + chr4_1:44067673-44067692 None:intergenic 20.0%
!! CCTTAAATAAGAATAAACAT+AGG - chr4_1:44067670-44067689 Msa0549170:intron 20.0%
!! AAAAAAAAATCTTGAAGACT+TGG + chr4_1:44067715-44067734 None:intergenic 20.0%
!!! TTTTTTCAGACAATAATTGA+TGG - chr4_1:44067731-44067750 Msa0549170:CDS 20.0%
!!! GAACTTTTATTTTTTTTTGC+AGG - chr4_1:44067811-44067830 Msa0549170:CDS 20.0%
!!! TTATTTTTTTTTGCAGGAAA+TGG - chr4_1:44067817-44067836 Msa0549170:CDS 20.0%
!!! TTACATAACATACCTTTTTA+AGG + chr4_1:44068348-44068367 None:intergenic 20.0%
!! TATACATGACATATATGAAT+TGG + chr4_1:44068448-44068467 None:intergenic 20.0%
!! ATACTTTGATCATATGTAAA+GGG + chr4_1:44068578-44068597 None:intergenic 20.0%
!! TGTATATTGTTTGTGTATAT+AGG + chr4_1:44068797-44068816 None:intergenic 20.0%
!! ATTTGACATATAATTATGAG+CGG - chr4_1:44068863-44068882 Msa0549170:CDS 20.0%
!! GATTTGGTAAGAAAATCAAA+AGG - chr4_1:44067497-44067516 Msa0549170:CDS 25.0%
! TAATCAACCATCTTTGAATT+TGG + chr4_1:44067546-44067565 None:intergenic 25.0%
!!! ATGCTATTTTACTCAATCAT+AGG - chr4_1:44067626-44067645 Msa0549170:intron 25.0%
! TATATTATTTGTCTCAACGT+TGG - chr4_1:44067758-44067777 Msa0549170:CDS 25.0%
! TCAAGAACAAAACAAACAAT+TGG - chr4_1:44067931-44067950 Msa0549170:CDS 25.0%
! CAAGAACAAAACAAACAATT+GGG - chr4_1:44067932-44067951 Msa0549170:CDS 25.0%
! AAGAACAAAACAAACAATTG+GGG - chr4_1:44067933-44067952 Msa0549170:CDS 25.0%
!! GTGATTCATATTTTCCAATT+CGG + chr4_1:44068161-44068180 None:intergenic 25.0%
!!! TAACATACCTTTTTAAGGTT+AGG + chr4_1:44068343-44068362 None:intergenic 25.0%
!! ATTCTAAGAGTTAGCTAATA+GGG + chr4_1:44068381-44068400 None:intergenic 25.0%
! CATACTTTGATCATATGTAA+AGG + chr4_1:44068579-44068598 None:intergenic 25.0%
! CACAAAAGTTGTCAAAAAAA+TGG + chr4_1:44068632-44068651 None:intergenic 25.0%
! TAAAATTTGCACAAAAACCA+AGG + chr4_1:44068706-44068725 None:intergenic 25.0%
!!! GTGTTATTTGAACAACTATT+TGG + chr4_1:44068773-44068792 None:intergenic 25.0%
!!! ATTATTTTATAGTTGGGTGA+AGG - chr4_1:44069535-44069554 Msa0549170:intron 25.0%
!!! TTATTTTATAGTTGGGTGAA+GGG - chr4_1:44069536-44069555 Msa0549170:intron 25.0%
!! GATTTGGTAAGAAAATCAAA+AGG - chr4_1:44067497-44067516 Msa0549170:CDS 25.0%
! TAATCAACCATCTTTGAATT+TGG + chr4_1:44067546-44067565 None:intergenic 25.0%
!!! ATGCTATTTTACTCAATCAT+AGG - chr4_1:44067626-44067645 Msa0549170:intron 25.0%
! TATATTATTTGTCTCAACGT+TGG - chr4_1:44067758-44067777 Msa0549170:CDS 25.0%
! TCAAGAACAAAACAAACAAT+TGG - chr4_1:44067931-44067950 Msa0549170:CDS 25.0%
! CAAGAACAAAACAAACAATT+GGG - chr4_1:44067932-44067951 Msa0549170:CDS 25.0%
! AAGAACAAAACAAACAATTG+GGG - chr4_1:44067933-44067952 Msa0549170:CDS 25.0%
!! GTGATTCATATTTTCCAATT+CGG + chr4_1:44068161-44068180 None:intergenic 25.0%
!!! TAACATACCTTTTTAAGGTT+AGG + chr4_1:44068343-44068362 None:intergenic 25.0%
!! ATTCTAAGAGTTAGCTAATA+GGG + chr4_1:44068381-44068400 None:intergenic 25.0%
! CATACTTTGATCATATGTAA+AGG + chr4_1:44068579-44068598 None:intergenic 25.0%
! CACAAAAGTTGTCAAAAAAA+TGG + chr4_1:44068632-44068651 None:intergenic 25.0%
! TAAAATTTGCACAAAAACCA+AGG + chr4_1:44068706-44068725 None:intergenic 25.0%
!!! GTGTTATTTGAACAACTATT+TGG + chr4_1:44068773-44068792 None:intergenic 25.0%
!!! ATTATTTTATAGTTGGGTGA+AGG - chr4_1:44069535-44069554 Msa0549170:intron 25.0%
!!! TTATTTTATAGTTGGGTGAA+GGG - chr4_1:44069536-44069555 Msa0549170:intron 25.0%
! TTGATGATACTTTCATTGCT+TGG + chr4_1:44067460-44067479 None:intergenic 30.0%
TAGGTCTCAAATAGATTTGT+AGG - chr4_1:44067689-44067708 Msa0549170:CDS 30.0%
! CGAATACAATATATTTGCTG+AGG - chr4_1:44067841-44067860 Msa0549170:CDS 30.0%
CATCTGCATCAAGAAAATTA+AGG + chr4_1:44067874-44067893 None:intergenic 30.0%
! TAATTTTCTTGATGCAGATG+TGG - chr4_1:44067874-44067893 Msa0549170:CDS 30.0%
! AATTTTCTTGATGCAGATGT+GGG - chr4_1:44067875-44067894 Msa0549170:CDS 30.0%
! TGGTATTTGAAACTGAAAAG+AGG + chr4_1:44068068-44068087 None:intergenic 30.0%
!!! ATTCTCTTTTGAGTTACTAG+GGG + chr4_1:44068116-44068135 None:intergenic 30.0%
!!! CATTCTCTTTTGAGTTACTA+GGG + chr4_1:44068117-44068136 None:intergenic 30.0%
!!! TCATTCTCTTTTGAGTTACT+AGG + chr4_1:44068118-44068137 None:intergenic 30.0%
! TTCATATTTTCCAATTCGGT+TGG + chr4_1:44068157-44068176 None:intergenic 30.0%
TCTTGTTCCTAACCTTAAAA+AGG - chr4_1:44068333-44068352 Msa0549170:intron 30.0%
! GATTCTAAGAGTTAGCTAAT+AGG + chr4_1:44068382-44068401 None:intergenic 30.0%
!!! TTTTTTCCACAACTTCCAAT+CGG + chr4_1:44069109-44069128 None:intergenic 30.0%
GATAACATTGAATGTGTTGT+TGG - chr4_1:44069182-44069201 Msa0549170:CDS 30.0%
!! TAGGAAAACAAGTGTTGATT+CGG - chr4_1:44069234-44069253 Msa0549170:intron 30.0%
AGATACAAGGGTAAATTTCA+TGG + chr4_1:44069501-44069520 None:intergenic 30.0%
! TTGATGATACTTTCATTGCT+TGG + chr4_1:44067460-44067479 None:intergenic 30.0%
TAGGTCTCAAATAGATTTGT+AGG - chr4_1:44067689-44067708 Msa0549170:CDS 30.0%
! CGAATACAATATATTTGCTG+AGG - chr4_1:44067841-44067860 Msa0549170:CDS 30.0%
CATCTGCATCAAGAAAATTA+AGG + chr4_1:44067874-44067893 None:intergenic 30.0%
! TAATTTTCTTGATGCAGATG+TGG - chr4_1:44067874-44067893 Msa0549170:CDS 30.0%
! AATTTTCTTGATGCAGATGT+GGG - chr4_1:44067875-44067894 Msa0549170:CDS 30.0%
! TGGTATTTGAAACTGAAAAG+AGG + chr4_1:44068068-44068087 None:intergenic 30.0%
!!! ATTCTCTTTTGAGTTACTAG+GGG + chr4_1:44068116-44068135 None:intergenic 30.0%
!!! CATTCTCTTTTGAGTTACTA+GGG + chr4_1:44068117-44068136 None:intergenic 30.0%
!!! TCATTCTCTTTTGAGTTACT+AGG + chr4_1:44068118-44068137 None:intergenic 30.0%
! TTCATATTTTCCAATTCGGT+TGG + chr4_1:44068157-44068176 None:intergenic 30.0%
TCTTGTTCCTAACCTTAAAA+AGG - chr4_1:44068333-44068352 Msa0549170:intron 30.0%
! GATTCTAAGAGTTAGCTAAT+AGG + chr4_1:44068382-44068401 None:intergenic 30.0%
!!! TTTTTTCCACAACTTCCAAT+CGG + chr4_1:44069109-44069128 None:intergenic 30.0%
GATAACATTGAATGTGTTGT+TGG - chr4_1:44069182-44069201 Msa0549170:CDS 30.0%
!! TAGGAAAACAAGTGTTGATT+CGG - chr4_1:44069234-44069253 Msa0549170:intron 30.0%
AGATACAAGGGTAAATTTCA+TGG + chr4_1:44069501-44069520 None:intergenic 30.0%
TTGAATTTGGAAAGCAGGAA+AGG + chr4_1:44067533-44067552 None:intergenic 35.0%
CATCTTTGAATTTGGAAAGC+AGG + chr4_1:44067538-44067557 None:intergenic 35.0%
CTGCTTTCCAAATTCAAAGA+TGG - chr4_1:44067536-44067555 Msa0549170:intron 35.0%
TTACTCAATCATAGGTCTCA+AGG - chr4_1:44067634-44067653 Msa0549170:intron 35.0%
TACTCAATCATAGGTCTCAA+GGG - chr4_1:44067635-44067654 Msa0549170:intron 35.0%
!! GATGGTGATGGAGAAATATT+TGG + chr4_1:44068040-44068059 None:intergenic 35.0%
AACTGAAAAGAGGAGTTAGA+TGG + chr4_1:44068058-44068077 None:intergenic 35.0%
!!! TTCTCTTTTGAGTTACTAGG+GGG + chr4_1:44068115-44068134 None:intergenic 35.0%
ACTCAACAGAAACCTCAAAA+GGG - chr4_1:44068179-44068198 Msa0549170:intron 35.0%
! ATTTTCCAATGACCCTTTTG+AGG + chr4_1:44068194-44068213 None:intergenic 35.0%
!!! CCTTTTGCTTTTTGAGGTTT+TGG + chr4_1:44068230-44068249 None:intergenic 35.0%
CCAAAACCTCAAAAAGCAAA+AGG - chr4_1:44068227-44068246 Msa0549170:intron 35.0%
ACTTTACCTCTTTATTGCCT+TGG - chr4_1:44068686-44068705 Msa0549170:intron 35.0%
CAAAAACCAAGGCAATAAAG+AGG + chr4_1:44068695-44068714 None:intergenic 35.0%
GAAAGAGCTTAAAAACCGAT+TGG - chr4_1:44069091-44069110 Msa0549170:CDS 35.0%
TAAAAACCGATTGGAAGTTG+TGG - chr4_1:44069100-44069119 Msa0549170:CDS 35.0%
! GGGGCTTCTAGTTAAAATTA+TGG - chr4_1:44069277-44069296 Msa0549170:intron 35.0%
AATAACAGTGTCTTACCCTT+TGG - chr4_1:44069332-44069351 Msa0549170:intron 35.0%
TTGAATTTGGAAAGCAGGAA+AGG + chr4_1:44067533-44067552 None:intergenic 35.0%
CATCTTTGAATTTGGAAAGC+AGG + chr4_1:44067538-44067557 None:intergenic 35.0%
CTGCTTTCCAAATTCAAAGA+TGG - chr4_1:44067536-44067555 Msa0549170:intron 35.0%
TTACTCAATCATAGGTCTCA+AGG - chr4_1:44067634-44067653 Msa0549170:intron 35.0%
TACTCAATCATAGGTCTCAA+GGG - chr4_1:44067635-44067654 Msa0549170:intron 35.0%
!! GATGGTGATGGAGAAATATT+TGG + chr4_1:44068040-44068059 None:intergenic 35.0%
AACTGAAAAGAGGAGTTAGA+TGG + chr4_1:44068058-44068077 None:intergenic 35.0%
!!! TTCTCTTTTGAGTTACTAGG+GGG + chr4_1:44068115-44068134 None:intergenic 35.0%
ACTCAACAGAAACCTCAAAA+GGG - chr4_1:44068179-44068198 Msa0549170:intron 35.0%
! ATTTTCCAATGACCCTTTTG+AGG + chr4_1:44068194-44068213 None:intergenic 35.0%
!!! CCTTTTGCTTTTTGAGGTTT+TGG + chr4_1:44068230-44068249 None:intergenic 35.0%
CCAAAACCTCAAAAAGCAAA+AGG - chr4_1:44068227-44068246 Msa0549170:intron 35.0%
ACTTTACCTCTTTATTGCCT+TGG - chr4_1:44068686-44068705 Msa0549170:intron 35.0%
CAAAAACCAAGGCAATAAAG+AGG + chr4_1:44068695-44068714 None:intergenic 35.0%
GAAAGAGCTTAAAAACCGAT+TGG - chr4_1:44069091-44069110 Msa0549170:CDS 35.0%
TAAAAACCGATTGGAAGTTG+TGG - chr4_1:44069100-44069119 Msa0549170:CDS 35.0%
! GGGGCTTCTAGTTAAAATTA+TGG - chr4_1:44069277-44069296 Msa0549170:intron 35.0%
AATAACAGTGTCTTACCCTT+TGG - chr4_1:44069332-44069351 Msa0549170:intron 35.0%
AAGTATCATCAATCAGCAGC+TGG - chr4_1:44067468-44067487 Msa0549170:CDS 40.0%
!! TGACTTGCTGAGATCATTTG+TGG + chr4_1:44067966-44067985 None:intergenic 40.0%
AAAGAGGAGTTAGATGGTGA+TGG + chr4_1:44068052-44068071 None:intergenic 40.0%
!! TTTTGGGGGTTGTCAAAAGA+TGG + chr4_1:44068088-44068107 None:intergenic 40.0%
! TTACTAGGGGGTGAATTTTG+GGG + chr4_1:44068103-44068122 None:intergenic 40.0%
! GTTACTAGGGGGTGAATTTT+GGG + chr4_1:44068104-44068123 None:intergenic 40.0%
! AGTTACTAGGGGGTGAATTT+TGG + chr4_1:44068105-44068124 None:intergenic 40.0%
CACTCAACAGAAACCTCAAA+AGG - chr4_1:44068178-44068197 Msa0549170:intron 40.0%
AGAAACCTCAAAAGGGTCAT+TGG - chr4_1:44068186-44068205 Msa0549170:intron 40.0%
TCATGGTAAGGATCACATCA+TGG - chr4_1:44068258-44068277 Msa0549170:intron 40.0%
TGCAAGAGCAATGAAGCTTT+GGG + chr4_1:44068311-44068330 None:intergenic 40.0%
TGAAGATTCGTCATCATGTG+AGG - chr4_1:44069160-44069179 Msa0549170:CDS 40.0%
!! TGTTGGTTCACCATTTCAAG+TGG - chr4_1:44069199-44069218 Msa0549170:CDS 40.0%
ACTCTTGCTTCCACTTGAAA+TGG + chr4_1:44069212-44069231 None:intergenic 40.0%
TCGAGTGTAGAATCTCCAAA+GGG + chr4_1:44069350-44069369 None:intergenic 40.0%
AGGGTACAACTTGAGCATAA+AGG - chr4_1:44069555-44069574 Msa0549170:intron 40.0%
AAGTATCATCAATCAGCAGC+TGG - chr4_1:44067468-44067487 Msa0549170:CDS 40.0%
!! TGACTTGCTGAGATCATTTG+TGG + chr4_1:44067966-44067985 None:intergenic 40.0%
AAAGAGGAGTTAGATGGTGA+TGG + chr4_1:44068052-44068071 None:intergenic 40.0%
!! TTTTGGGGGTTGTCAAAAGA+TGG + chr4_1:44068088-44068107 None:intergenic 40.0%
! TTACTAGGGGGTGAATTTTG+GGG + chr4_1:44068103-44068122 None:intergenic 40.0%
! GTTACTAGGGGGTGAATTTT+GGG + chr4_1:44068104-44068123 None:intergenic 40.0%
! AGTTACTAGGGGGTGAATTT+TGG + chr4_1:44068105-44068124 None:intergenic 40.0%
CACTCAACAGAAACCTCAAA+AGG - chr4_1:44068178-44068197 Msa0549170:intron 40.0%
AGAAACCTCAAAAGGGTCAT+TGG - chr4_1:44068186-44068205 Msa0549170:intron 40.0%
TCATGGTAAGGATCACATCA+TGG - chr4_1:44068258-44068277 Msa0549170:intron 40.0%
TGCAAGAGCAATGAAGCTTT+GGG + chr4_1:44068311-44068330 None:intergenic 40.0%
TGAAGATTCGTCATCATGTG+AGG - chr4_1:44069160-44069179 Msa0549170:CDS 40.0%
!! TGTTGGTTCACCATTTCAAG+TGG - chr4_1:44069199-44069218 Msa0549170:CDS 40.0%
ACTCTTGCTTCCACTTGAAA+TGG + chr4_1:44069212-44069231 None:intergenic 40.0%
TCGAGTGTAGAATCTCCAAA+GGG + chr4_1:44069350-44069369 None:intergenic 40.0%
AGGGTACAACTTGAGCATAA+AGG - chr4_1:44069555-44069574 Msa0549170:intron 40.0%
CAGCAGCTGGTTATCTGATT+TGG - chr4_1:44067481-44067500 Msa0549170:CDS 45.0%
TTTCTTGATGCAGATGTGGG+AGG - chr4_1:44067878-44067897 Msa0549170:CDS 45.0%
TTCTTGATGCAGATGTGGGA+GGG - chr4_1:44067879-44067898 Msa0549170:CDS 45.0%
GCTGAGATCATTTGTGGAAG+TGG + chr4_1:44067960-44067979 None:intergenic 45.0%
! TACTAGGGGGTGAATTTTGG+GGG + chr4_1:44068102-44068121 None:intergenic 45.0%
ATCAGTGTCTCCAACCGAAT+TGG - chr4_1:44068144-44068163 Msa0549170:intron 45.0%
!!! ACGAGGCCTTTTGCTTTTTG+AGG + chr4_1:44068236-44068255 None:intergenic 45.0%
CTGCAAGAGCAATGAAGCTT+TGG + chr4_1:44068312-44068331 None:intergenic 45.0%
!! CTGCATATGCATGGTTTGGT+CGG + chr4_1:44069137-44069156 None:intergenic 45.0%
ATCGCTGCATATGCATGGTT+TGG + chr4_1:44069141-44069160 None:intergenic 45.0%
TCTTCATCGCTGCATATGCA+TGG + chr4_1:44069146-44069165 None:intergenic 45.0%
!! CAAGTGGAAGCAAGAGTGTT+AGG - chr4_1:44069215-44069234 Msa0549170:CDS 45.0%
!! GTTGATTCGGTTCCAATGCA+AGG - chr4_1:44069247-44069266 Msa0549170:intron 45.0%
! TTCCAATGCAAGGAGCACAA+GGG - chr4_1:44069257-44069276 Msa0549170:intron 45.0%
GTCGAGTGTAGAATCTCCAA+AGG + chr4_1:44069351-44069370 None:intergenic 45.0%
CGACATTACCATCATTGCTC+AGG - chr4_1:44069367-44069386 Msa0549170:intron 45.0%
ACTTGTGAAGAACGTACGCA+TGG - chr4_1:44069579-44069598 Msa0549170:CDS 45.0%
CAGCAGCTGGTTATCTGATT+TGG - chr4_1:44067481-44067500 Msa0549170:CDS 45.0%
TTTCTTGATGCAGATGTGGG+AGG - chr4_1:44067878-44067897 Msa0549170:CDS 45.0%
TTCTTGATGCAGATGTGGGA+GGG - chr4_1:44067879-44067898 Msa0549170:CDS 45.0%
GCTGAGATCATTTGTGGAAG+TGG + chr4_1:44067960-44067979 None:intergenic 45.0%
! TACTAGGGGGTGAATTTTGG+GGG + chr4_1:44068102-44068121 None:intergenic 45.0%
ATCAGTGTCTCCAACCGAAT+TGG - chr4_1:44068144-44068163 Msa0549170:intron 45.0%
!!! ACGAGGCCTTTTGCTTTTTG+AGG + chr4_1:44068236-44068255 None:intergenic 45.0%
CTGCAAGAGCAATGAAGCTT+TGG + chr4_1:44068312-44068331 None:intergenic 45.0%
!! CTGCATATGCATGGTTTGGT+CGG + chr4_1:44069137-44069156 None:intergenic 45.0%
ATCGCTGCATATGCATGGTT+TGG + chr4_1:44069141-44069160 None:intergenic 45.0%
TCTTCATCGCTGCATATGCA+TGG + chr4_1:44069146-44069165 None:intergenic 45.0%
!! CAAGTGGAAGCAAGAGTGTT+AGG - chr4_1:44069215-44069234 Msa0549170:CDS 45.0%
!! GTTGATTCGGTTCCAATGCA+AGG - chr4_1:44069247-44069266 Msa0549170:intron 45.0%
! TTCCAATGCAAGGAGCACAA+GGG - chr4_1:44069257-44069276 Msa0549170:intron 45.0%
GTCGAGTGTAGAATCTCCAA+AGG + chr4_1:44069351-44069370 None:intergenic 45.0%
CGACATTACCATCATTGCTC+AGG - chr4_1:44069367-44069386 Msa0549170:intron 45.0%
ACTTGTGAAGAACGTACGCA+TGG - chr4_1:44069579-44069598 Msa0549170:CDS 45.0%
!!! TTTATATTTTGAAATATTTA+GGG - chr4_1:44068520-44068539 Msa0549170:intron 5.0%
!!! TTATTTTTTTTTGTAAATTT+TGG - chr4_1:44068728-44068747 Msa0549170:CDS 5.0%
!!! ATTTTGTTTTTTTTTTATTT+TGG - chr4_1:44069465-44069484 Msa0549170:intron 5.0%
!!! TTTATATTTTGAAATATTTA+GGG - chr4_1:44068520-44068539 Msa0549170:intron 5.0%
!!! TTATTTTTTTTTGTAAATTT+TGG - chr4_1:44068728-44068747 Msa0549170:CDS 5.0%
!!! ATTTTGTTTTTTTTTTATTT+TGG - chr4_1:44069465-44069484 Msa0549170:intron 5.0%
TGATCCTTACCATGAGCACG+AGG + chr4_1:44068253-44068272 None:intergenic 50.0%
! GTTCCAATGCAAGGAGCACA+AGG - chr4_1:44069256-44069275 Msa0549170:intron 50.0%
! TCCAATGCAAGGAGCACAAG+GGG - chr4_1:44069258-44069277 Msa0549170:intron 50.0%
GGTAGCTACCTGAGCAATGA+TGG + chr4_1:44069378-44069397 None:intergenic 50.0%
TGATCCTTACCATGAGCACG+AGG + chr4_1:44068253-44068272 None:intergenic 50.0%
! GTTCCAATGCAAGGAGCACA+AGG - chr4_1:44069256-44069275 Msa0549170:intron 50.0%
! TCCAATGCAAGGAGCACAAG+GGG - chr4_1:44069258-44069277 Msa0549170:intron 50.0%
GGTAGCTACCTGAGCAATGA+TGG + chr4_1:44069378-44069397 None:intergenic 50.0%
AGCAAAAGGCCTCGTGCTCA+TGG - chr4_1:44068241-44068260 Msa0549170:intron 55.0%
AAGGCCTCGTGCTCATGGTA+AGG - chr4_1:44068246-44068265 Msa0549170:intron 55.0%
AGCAAAAGGCCTCGTGCTCA+TGG - chr4_1:44068241-44068260 Msa0549170:intron 55.0%
AAGGCCTCGTGCTCATGGTA+AGG - chr4_1:44068246-44068265 Msa0549170:intron 55.0%
GCCCCTTGTGCTCCTTGCAT+TGG + chr4_1:44069262-44069281 None:intergenic 60.0%
GCCCCTTGTGCTCCTTGCAT+TGG + chr4_1:44069262-44069281 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 44067440 44069627 44067440 ID=Msa0549170;Name=Msa0549170
chr4_1 mRNA 44067440 44069627 44067440 ID=Msa0549170-mRNA-1;Parent=Msa0549170;Name=Msa0549170-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|4|0|334
chr4_1 exon 44069565 44069627 44069565 ID=Msa0549170-mRNA-1:exon:11393;Parent=Msa0549170-mRNA-1
chr4_1 exon 44068713 44069234 44068713 ID=Msa0549170-mRNA-1:exon:11392;Parent=Msa0549170-mRNA-1
chr4_1 exon 44067679 44068017 44067679 ID=Msa0549170-mRNA-1:exon:11391;Parent=Msa0549170-mRNA-1
chr4_1 exon 44067440 44067520 44067440 ID=Msa0549170-mRNA-1:exon:11390;Parent=Msa0549170-mRNA-1
chr4_1 CDS 44069565 44069627 44069565 ID=Msa0549170-mRNA-1:cds;Parent=Msa0549170-mRNA-1
chr4_1 CDS 44068713 44069234 44068713 ID=Msa0549170-mRNA-1:cds;Parent=Msa0549170-mRNA-1
chr4_1 CDS 44067679 44068017 44067679 ID=Msa0549170-mRNA-1:cds;Parent=Msa0549170-mRNA-1
chr4_1 CDS 44067440 44067520 44067440 ID=Msa0549170-mRNA-1:cds;Parent=Msa0549170-mRNA-1
Gene Sequence

>Msa0549170

ATGGAGGAAATCAACAACCAAGCAATGAAAGTATCATCAATCAGCAGCTGGTTATCTGATTTGGAAATGGACGAATACAATATATTTGCTGAGGAATGCAACCTTAATTTTCTTGATGCAGATGTGGGAGGGTTTCTTTCAGATGACATATCTAATGTATTTCAAGAACAAAACAAACAATTGGGGTCCACTTCCACAAATGATCTCAGCAAGTCATTCATTCACGAAACAATTGATAATAGTGACAAAATCAATGAATCACTTTCACCAAATATTTCTCCATCACCATCTAACTCCTCTTTTCAGTTTCAAATACCATCTTTTGACAACCCCCAAAATTCACCCCCTAGTAACTCAAAAGAGAATGAAACAATATCAGTGTCTCCAACCGAATTGGAAAATATGAATCACTCAACAGAAACCTCAAAAGGGTCATTGGAAAATGAAAAGTTTGAAGCCAAAACCTCAAAAAGCAAAAGGCCTCGTGCTCATGGTAAGGATCACATCATGGCTGAGAGAAATCGTAGAGAGAAACTCACCCAAAGCTTCATTGCTCTTGCAGCTCTTGTTCCTAACCTTAAAAAGATGGACAAGTTATCTGTACTAATTGACACTATCAAATACTTGAAAGAGCTTAAAAACCGATTGGAAGTTGTGGAAAAAAAGTCACCGACCAAACCATGCATATGCAGCGATGAAGATTCGTCATCATGTGAGGATAACATTGAATGTGTTGTTGGTTCACCATTTCAAGTGGAAGCAAGAGTGTTAGGAAAACAAGTGTTGATTCGGTTCCAATGCAAGGAGCACAAGGGGCTTCTAGTTAAAATTATGGTCGAAATTCAAAAATTTCAACTATTTGTTGTCAATAACAGTGTCTTACCCTTTGGAGATTCTACACTCGACATTACCATCATTGCTCAGTTGGGTGAAGGGTACAACTTGAGCATAAAGGAACTTGTGAAGAACGTACGCATGGCATTATTGAAGTTTACATCATCATAA

Protein sequence

>Msa0549170

MEEINNQAMKVSSISSWLSDLEMDEYNIFAEECNLNFLDADVGGFLSDDISNVFQEQNKQLGSTSTNDLSKSFIHETIDNSDKINESLSPNISPSPSNSSFQFQIPSFDNPQNSPPSNSKENETISVSPTELENMNHSTETSKGSLENEKFEAKTSKSKRPRAHGKDHIMAERNRREKLTQSFIALAALVPNLKKMDKLSVLIDTIKYLKELKNRLEVVEKKSPTKPCICSDEDSSSCEDNIECVVGSPFQVEARVLGKQVLIRFQCKEHKGLLVKIMVEIQKFQLFVVNNSVLPFGDSTLDITIIAQLGEGYNLSIKELVKNVRMALLKFTSS*