AlfalfaGEDB | Msa1126570

M. sativa cultivar zhongmu-4 / Msa1126570

KEGG: K14209
GO: GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0012505 GO:0015075 GO:0015171 GO:0015173 GO:0015175 GO:0015318 GO:0015711 GO:0015801 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031984 GO:0034220 GO:0042175 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:0098827 GO:1903825 GO:1905039
PFAM: PF01490.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126570	XP_013450280.1	97.297	407	11	0	1	407	1	407	0.0	803

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126570	sp\|Q9SF09\|ANT1_ARATH	63.895	421	137	3	2	407	12	432	0.0	546

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126570	A0A072U589	97.297	407	11	0	1	407	1	407	0.0	803

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0065950	Msa1126570	0.805026	1.628236e-49	-8.615850e-47
Msa0090390	Msa1126570	0.803229	3.851512e-49	-8.615850e-47
Msa0137870	Msa1126570	0.802678	5.005215e-49	-8.615850e-47
Msa0139670	Msa1126570	0.824512	7.753008e-54	-8.615850e-47
Msa0187830	Msa1126570	0.823743	1.175329e-53	-8.615850e-47
Msa0226180	Msa1126570	0.805649	1.205287e-49	-8.615850e-47
Msa0249550	Msa1126570	0.802428	5.637494e-49	-8.615850e-47
Msa0304840	Msa1126570	0.803172	3.957258e-49	-8.615850e-47
Msa0340690	Msa1126570	0.805758	1.143782e-49	-8.615850e-47
Msa0341230	Msa1126570	0.808652	2.787856e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126570	MtrunA17_Chr7g0268151	98.513	269	4	0	139	407	1	269	0.0	534
Msa1126570	MtrunA17_Chr5g0407141	37.440	414	229	7	3	404	19	414	1.12e-74	238
Msa1126570	MtrunA17_Chr8g0370311	37.681	414	231	5	4	407	12	408	2.33e-73	235
Msa1126570	MtrunA17_Chr8g0361631	27.842	431	259	13	1	407	1	403	2.06e-34	132
Msa1126570	MtrunA17_Chr7g0217401	25.829	422	277	11	2	407	26	427	1.43e-30	121
Msa1126570	MtrunA17_Chr8g0361641	26.562	384	251	10	34	407	1	363	1.46e-29	117
Msa1126570	MtrunA17_Chr7g0217381	25.118	422	281	11	1	407	25	426	1.87e-29	118
Msa1126570	MtrunA17_Chr3g0090101	25.879	398	262	11	21	407	5	380	9.51e-26	107
Msa1126570	MtrunA17_Chr3g0105861	25.121	414	281	9	4	407	33	427	4.28e-25	106
Msa1126570	MtrunA17_Chr8g0361211	24.557	395	267	8	17	401	68	441	1.13e-24	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126570	AT3G11900.2	63.895	421	137	3	2	407	12	432	0.0	546
Msa1126570	AT3G11900.1	63.895	421	137	3	2	407	12	432	0.0	546
Msa1126570	AT4G38250.1	37.559	426	223	8	3	404	22	428	2.00e-83	262
Msa1126570	AT2G42005.1	37.650	417	225	7	3	404	11	407	2.26e-80	253
Msa1126570	AT5G65990.1	37.136	412	230	7	3	404	27	419	4.80e-70	227
Msa1126570	AT5G15240.1	24.289	387	265	8	28	404	48	416	3.21e-29	118
Msa1126570	AT2G39130.2	25.424	413	278	10	1	404	150	541	4.24e-27	113
Msa1126570	AT2G39130.1	25.424	413	278	10	1	404	150	541	4.24e-27	113
Msa1126570	AT5G02180.1	26.442	416	267	12	4	404	150	541	9.65e-26	109
Msa1126570	AT5G02180.2	26.442	416	267	12	4	404	150	541	9.65e-26	109

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Find 115 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGCATTGCACACA+AGG	0.559468	7_3:-78142413	None:intergenic
AAACGAAAACCCATCCTCTA+AGG	0.374336	7_3:-78141167	None:intergenic
AAAGTCTGAGCCAGCAATTT+TGG	0.194534	7_3:-78141319	None:intergenic
AAATAGGGAAGAGAGAGTGA+AGG	0.582416	7_3:+78142685	Msa1126570:three_prime_UTR
AAGTAGGAGCATGCAATAAT+AGG	0.366520	7_3:-78140175	None:intergenic
AATAATGATTCAATAAGACT+AGG	0.630124	7_3:+78142286	Msa1126570:CDS
AATATCATTGTTACTGTAGT+TGG	0.346950	7_3:+78140066	Msa1126570:CDS
AATATGTAGGAGGCAAGCGA+TGG	0.653012	7_3:-78141013	None:intergenic
ACAGCCATGCCTGCTGCAAA+TGG	0.444083	7_3:-78141229	None:intergenic
ACAGTTACACTCTGTTTGGT+AGG	0.521851	7_3:+78142658	Msa1126570:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTATAACATGTGTTTGATCA+TGG	+	chr7_3:78139910-78139929	Msa1126570:five_prime_UTR	30.0%
ATGAGCATAGAATTTGATTC+AGG	+	chr7_3:78140296-78140315	Msa1126570:intron	30.0%
ATTCAGGTAGGTTTCAATAT+TGG	+	chr7_3:78140312-78140331	Msa1126570:intron	30.0%
AAATGCAACACGCATAATAA+TGG	-	chr7_3:78140623-78140642	None:intergenic	30.0%
TTCATTATATGCAGGGAATT+CGG	+	chr7_3:78140745-78140764	Msa1126570:intron	30.0%
TGATTTCATTGATACAGGTT+TGG	+	chr7_3:78140798-78140817	Msa1126570:intron	30.0%
TAAGATCTTGATTCCACTAA+CGG	-	chr7_3:78140851-78140870	None:intergenic	30.0%
TTAGTGGAATCAAGATCTTA+TGG	+	chr7_3:78140851-78140870	Msa1126570:CDS	30.0%
TTATAAATTCTGTCAGATGC+CGG	-	chr7_3:78140910-78140929	None:intergenic	30.0%
GTTGCGTATTTGGTATTTAT+TGG	+	chr7_3:78140956-78140975	Msa1126570:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	78139766	78142854	78139766	ID=Msa1126570;Name=Msa1126570
chr7_3	mRNA	78139766	78142854	78139766	ID=Msa1126570-mRNA-1;Parent=Msa1126570;Name=Msa1126570-mRNA-1;_AED=0.05;_eAED=0.05;_QI=240\|1\|1\|1\|1\|1\|3\|281\|407
chr7_3	exon	78139766	78140197	78139766	ID=Msa1126570-mRNA-1:exon:21693;Parent=Msa1126570-mRNA-1
chr7_3	exon	78140815	78141462	78140815	ID=Msa1126570-mRNA-1:exon:21694;Parent=Msa1126570-mRNA-1
chr7_3	exon	78142190	78142854	78142190	ID=Msa1126570-mRNA-1:exon:21695;Parent=Msa1126570-mRNA-1
chr7_3	five_prime_UTR	78139766	78140005	78139766	ID=Msa1126570-mRNA-1:five_prime_utr;Parent=Msa1126570-mRNA-1
chr7_3	CDS	78140006	78140197	78140006	ID=Msa1126570-mRNA-1:cds;Parent=Msa1126570-mRNA-1
chr7_3	CDS	78140815	78141462	78140815	ID=Msa1126570-mRNA-1:cds;Parent=Msa1126570-mRNA-1
chr7_3	CDS	78142190	78142573	78142190	ID=Msa1126570-mRNA-1:cds;Parent=Msa1126570-mRNA-1
chr7_3	three_prime_UTR	78142574	78142854	78142574	ID=Msa1126570-mRNA-1:three_prime_utr;Parent=Msa1126570-mRNA-1

Gene Sequence

>Msa1126570

ATGGATCACGAAACCCCTTTGTTATCTTCCAAAAGAGCTTCAAAGCTTCAAACTTTGGGGAATATCATTGTTACTGTAGTTGGAACTGGTGTTTTGGGTTTACCCTTTGCTTTTCGGATTGCTGGTTGGGTTGCTGGCTCGCTTGGTGTTGCTATCGTTGGCATTGCAACCTATTATTGCATGCTCCTACTTGTTTGGTGCAGAGATAAGTTGGCATCAGAAGAGCCGTTAGTGGAATCAAGATCTTATGGAGACCTGGGTTATAGATGCTTTGGAACATTCGGCCGGCATCTGACAGAATTTATAATCGTCGTAGCACAATGTGCAGGATCTGTTGCGTATTTGGTATTTATTGGGCAAAACCTTGATTCTGTATTCCAAAAATATGGACCATCGCTTGCCTCCTACATATTTATGCTAGTACCAGTTGAAATTGGGATGTCATGGATAGGTAGCTTATCAGCTTTAGCACCATTTAGCATTTTTGCTGATGTGTGCAATGTCCTAGCTATGGGAATTGTAGTGAAGGAAGATGTACGAGTGGCCTTAGAGGATGGGTTTTCGTTTAGAGAAAGGACGGCAATCACGTCGAACATTGGGGGGTTGCCATTTGCAGCAGGCATGGCTGTTTTTTGTTTTGAGGGGTTTGGAATGACACTTGCCCTAGAGAATTCTATGAAGGATAAAGCTAAATTCCCAAAATTGCTGGCTCAGACTTTTAGTGGCATAACACTCGTATACATTCTTTTTGGGTTATGTGGTTACATGGCTTTTGGTGAAGAAACCAGAGACATTGTGACCCTTAATCTCCCTAGGAGCTGGTCATCTCTTGCCGTACAGGTAGGATTGTGCCTGGGGCTTATGTTCACATTTCCAATCATGTTACACCCAATTAATGAGATTGTAGAAGGAAAGCTCAAAATCATACACAGAAACAATAATGATTCAATAAGACTAGGAAAAATTACAGTATACATCAGTCGTGCTATTGTGGTGGTTGTGCTGGCTGTCATAGCTTCATTTGTGCCAGAATTTGGTGTATTTGCCTCATTTGTGGGGAGTACCTTGTGTGCAATGCTTTCTTTTGTTTTGCCAGCCACATTTCACCTAAAATTATTTGGCTCTTCTCTATGCCTCTGGCAAAAGGTCCTTGATTATATTGTATTAATCAGTGGATTATTTTTTGCTGTTTATGGAACTTACAACACAATTGTTGGAGTTTGA

Protein sequence

>Msa1126570

MDHETPLLSSKRASKLQTLGNIIVTVVGTGVLGLPFAFRIAGWVAGSLGVAIVGIATYYCMLLLVWCRDKLASEEPLVESRSYGDLGYRCFGTFGRHLTEFIIVVAQCAGSVAYLVFIGQNLDSVFQKYGPSLASYIFMLVPVEIGMSWIGSLSALAPFSIFADVCNVLAMGIVVKEDVRVALEDGFSFRERTAITSNIGGLPFAAGMAVFCFEGFGMTLALENSMKDKAKFPKLLAQTFSGITLVYILFGLCGYMAFGEETRDIVTLNLPRSWSSLAVQVGLCLGLMFTFPIMLHPINEIVEGKLKIIHRNNNDSIRLGKITVYISRAIVVVVLAVIASFVPEFGVFASFVGSTLCAMLSFVLPATFHLKLFGSSLCLWQKVLDYIVLISGLFFAVYGTYNTIVGV*