Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081240 | XP_013450280.1 | 97.297 | 407 | 11 | 0 | 1 | 407 | 1 | 407 | 0.0 | 803 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081240 | sp|Q9SF09|ANT1_ARATH | 63.895 | 421 | 137 | 3 | 2 | 407 | 12 | 432 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081240 | A0A072U589 | 97.297 | 407 | 11 | 0 | 1 | 407 | 1 | 407 | 0.0 | 803 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045550 | Msa1081240 | 0.811245 | 7.709171e-51 | -8.615850e-47 |
| Msa0046560 | Msa1081240 | 0.836530 | 8.864959e-57 | -8.615850e-47 |
| Msa0051450 | Msa1081240 | 0.805012 | 1.639433e-49 | -8.615850e-47 |
| Msa0090390 | Msa1081240 | 0.814375 | 1.590539e-51 | -8.615850e-47 |
| Msa0638360 | Msa1081240 | 0.819818 | 9.509636e-53 | -8.615850e-47 |
| Msa0640940 | Msa1081240 | 0.826301 | 2.924875e-54 | -8.615850e-47 |
| Msa0679360 | Msa1081240 | 0.815404 | 9.407374e-52 | -8.615850e-47 |
| Msa0696850 | Msa1081240 | 0.802759 | 4.816961e-49 | -8.615850e-47 |
| Msa0698440 | Msa1081240 | 0.801544 | 8.566306e-49 | -8.615850e-47 |
| Msa0709120 | Msa1081240 | 0.831826 | 1.339377e-55 | -8.615850e-47 |
| Msa0721340 | Msa1081240 | 0.800306 | 1.533553e-48 | -8.615850e-47 |
| Msa0758250 | Msa1081240 | 0.807673 | 4.505347e-50 | -8.615850e-47 |
| Msa0789560 | Msa1081240 | 0.846652 | 1.898392e-59 | -8.615850e-47 |
| Msa0809140 | Msa1081240 | 0.801076 | 1.067901e-48 | -8.615850e-47 |
| Msa0137870 | Msa1081240 | 0.811528 | 6.693403e-51 | -8.615850e-47 |
| Msa0139670 | Msa1081240 | 0.834381 | 3.096884e-56 | -8.615850e-47 |
| Msa0175050 | Msa1081240 | 0.821415 | 4.087358e-53 | -8.615850e-47 |
| Msa0194010 | Msa1081240 | 0.824952 | 6.107520e-54 | -8.615850e-47 |
| Msa0200650 | Msa1081240 | 0.803945 | 2.735412e-49 | -8.615850e-47 |
| Msa0226180 | Msa1081240 | 0.800454 | 1.430323e-48 | -8.615850e-47 |
| Msa0232340 | Msa1081240 | 0.800098 | 1.690346e-48 | -8.615850e-47 |
| Msa0235880 | Msa1081240 | 0.835907 | 1.276884e-56 | -8.615850e-47 |
| Msa0382370 | Msa1081240 | 0.830053 | 3.647321e-55 | -8.615850e-47 |
| Msa0388650 | Msa1081240 | 0.965213 | 2.585444e-124 | -8.615850e-47 |
| Msa0395980 | Msa1081240 | 0.800152 | 1.648021e-48 | -8.615850e-47 |
| Msa0398200 | Msa1081240 | 0.831671 | 1.462554e-55 | -8.615850e-47 |
| Msa0432160 | Msa1081240 | 0.816765 | 4.670547e-52 | -8.615850e-47 |
| Msa0438040 | Msa1081240 | 0.805447 | 1.329319e-49 | -8.615850e-47 |
| Msa0476680 | Msa1081240 | 0.810128 | 1.344482e-50 | -8.615850e-47 |
| Msa0992600 | Msa1081240 | 0.813433 | 2.566234e-51 | -8.615850e-47 |
| Msa1034700 | Msa1081240 | 0.803224 | 3.861071e-49 | -8.615850e-47 |
| Msa1040980 | Msa1081240 | 0.803748 | 3.006378e-49 | -8.615850e-47 |
| Msa1072900 | Msa1081240 | 0.805197 | 1.499254e-49 | -8.615850e-47 |
| Msa1081220 | Msa1081240 | 0.990293 | 5.929474e-182 | -8.615850e-47 |
| Msa1081240 | Msa1126570 | 0.833526 | 5.069383e-56 | -8.615850e-47 |
| Msa1081240 | Msa1127380 | 0.839532 | 1.498279e-57 | -8.615850e-47 |
| Msa1081240 | Msa1127430 | 0.831623 | 1.502825e-55 | -8.615850e-47 |
| Msa1081240 | Msa1177780 | 0.819667 | 1.029649e-52 | -8.615850e-47 |
| Msa1081240 | Msa1208790 | 0.807401 | 5.145583e-50 | -8.615850e-47 |
| Msa1081240 | Msa1234620 | 0.846822 | 1.705603e-59 | -8.615850e-47 |
| Msa1081240 | Msa1258980 | 0.802129 | 6.493851e-49 | -8.615850e-47 |
| Msa1081240 | Msa1330630 | 0.804375 | 2.226400e-49 | -8.615850e-47 |
| Msa1081240 | Msa1332050 | 0.822638 | 2.127754e-53 | -8.615850e-47 |
| Msa1081240 | Msa1336040 | 0.839676 | 1.374019e-57 | -8.615850e-47 |
| Msa1081240 | Msa1384100 | 0.802717 | 4.913058e-49 | -8.615850e-47 |
| Msa1081240 | Msa1426910 | 0.827263 | 1.723117e-54 | -8.615850e-47 |
| Msa1081240 | Msa1434040 | 0.802641 | 5.095703e-49 | -8.615850e-47 |
| Msa1081240 | Msa1444120 | 0.808620 | 2.831367e-50 | -8.615850e-47 |
| Msa1081240 | Msa1456230 | 0.839278 | 1.743354e-57 | -8.615850e-47 |
| Msa0304840 | Msa1081240 | 0.828325 | 9.574245e-55 | -8.615850e-47 |
| Msa0341230 | Msa1081240 | 0.835783 | 1.372258e-56 | -8.615850e-47 |
| Msa0482940 | Msa1081240 | 0.805502 | 1.294221e-49 | -8.615850e-47 |
| Msa0485490 | Msa1081240 | 0.800118 | 1.674473e-48 | -8.615850e-47 |
| Msa0521010 | Msa1081240 | 0.813296 | 2.750795e-51 | -8.615850e-47 |
| Msa0600450 | Msa1081240 | 0.808802 | 2.589632e-50 | -8.615850e-47 |
| Msa0857300 | Msa1081240 | 0.814094 | 1.835145e-51 | -8.615850e-47 |
| Msa0921420 | Msa1081240 | 0.803717 | 3.051008e-49 | -8.615850e-47 |
| Msa0945120 | Msa1081240 | 0.805176 | 1.514554e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081240 | MtrunA17_Chr7g0268151 | 98.513 | 269 | 4 | 0 | 139 | 407 | 1 | 269 | 0.0 | 534 |
| Msa1081240 | MtrunA17_Chr5g0407141 | 37.440 | 414 | 229 | 7 | 3 | 404 | 19 | 414 | 1.12e-74 | 238 |
| Msa1081240 | MtrunA17_Chr8g0370311 | 37.681 | 414 | 231 | 5 | 4 | 407 | 12 | 408 | 2.33e-73 | 235 |
| Msa1081240 | MtrunA17_Chr8g0361631 | 27.842 | 431 | 259 | 13 | 1 | 407 | 1 | 403 | 2.06e-34 | 132 |
| Msa1081240 | MtrunA17_Chr7g0217401 | 25.829 | 422 | 277 | 11 | 2 | 407 | 26 | 427 | 1.43e-30 | 121 |
| Msa1081240 | MtrunA17_Chr8g0361641 | 26.562 | 384 | 251 | 10 | 34 | 407 | 1 | 363 | 1.46e-29 | 117 |
| Msa1081240 | MtrunA17_Chr7g0217381 | 25.118 | 422 | 281 | 11 | 1 | 407 | 25 | 426 | 1.87e-29 | 118 |
| Msa1081240 | MtrunA17_Chr3g0090101 | 25.879 | 398 | 262 | 11 | 21 | 407 | 5 | 380 | 9.51e-26 | 107 |
| Msa1081240 | MtrunA17_Chr3g0105861 | 25.121 | 414 | 281 | 9 | 4 | 407 | 33 | 427 | 4.28e-25 | 106 |
| Msa1081240 | MtrunA17_Chr8g0361211 | 24.557 | 395 | 267 | 8 | 17 | 401 | 68 | 441 | 1.13e-24 | 105 |
| Msa1081240 | MtrunA17_Chr8g0361591 | 29.023 | 348 | 217 | 8 | 34 | 372 | 1 | 327 | 3.30e-24 | 102 |
| Msa1081240 | MtrunA17_Chr4g0022261 | 24.257 | 404 | 278 | 8 | 14 | 407 | 135 | 520 | 3.49e-24 | 104 |
| Msa1081240 | MtrunA17_Chr7g0256281 | 26.683 | 401 | 257 | 11 | 17 | 407 | 146 | 519 | 1.33e-23 | 102 |
| Msa1081240 | MtrunA17_Chr1g0171021 | 29.167 | 264 | 168 | 6 | 17 | 272 | 157 | 409 | 3.95e-23 | 100 |
| Msa1081240 | MtrunA17_Chr1g0199431 | 31.690 | 284 | 164 | 9 | 1 | 273 | 143 | 407 | 5.11e-23 | 100 |
| Msa1081240 | MtrunA17_Chr7g0239021 | 26.799 | 403 | 249 | 13 | 3 | 381 | 138 | 518 | 1.55e-17 | 84.7 |
| Msa1081240 | MtrunA17_Chr7g0239011 | 25.127 | 394 | 256 | 12 | 6 | 381 | 50 | 422 | 2.87e-16 | 80.5 |
| Msa1081240 | MtrunA17_Chr8g0376991 | 20.241 | 415 | 300 | 9 | 1 | 397 | 14 | 415 | 3.47e-15 | 77.0 |
| Msa1081240 | MtrunA17_Chr3g0122241 | 25.432 | 405 | 270 | 11 | 9 | 400 | 74 | 459 | 1.34e-14 | 75.5 |
| Msa1081240 | MtrunA17_Chr3g0077651 | 22.705 | 414 | 285 | 12 | 6 | 397 | 48 | 448 | 1.50e-14 | 75.1 |
| Msa1081240 | MtrunA17_Chr7g0256251 | 28.090 | 267 | 168 | 7 | 17 | 273 | 146 | 398 | 3.91e-14 | 73.6 |
| Msa1081240 | MtrunA17_Chr1g0184721 | 23.876 | 356 | 238 | 13 | 34 | 371 | 47 | 387 | 4.01e-14 | 73.6 |
| Msa1081240 | MtrunA17_Chr8g0366021 | 22.196 | 419 | 269 | 10 | 21 | 403 | 55 | 452 | 1.15e-12 | 69.3 |
| Msa1081240 | MtrunA17_Chr6g0458921 | 22.738 | 409 | 284 | 11 | 4 | 393 | 8 | 403 | 1.23e-12 | 68.9 |
| Msa1081240 | MtrunA17_Chr2g0328081 | 21.707 | 410 | 291 | 10 | 2 | 393 | 6 | 403 | 2.18e-12 | 68.2 |
| Msa1081240 | MtrunA17_Chr6g0459031 | 22.141 | 411 | 288 | 11 | 2 | 393 | 6 | 403 | 2.34e-12 | 68.2 |
| Msa1081240 | MtrunA17_Chr6g0459021 | 20.570 | 316 | 231 | 7 | 6 | 306 | 30 | 340 | 1.16e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1081240 | AT3G11900.2 | 63.895 | 421 | 137 | 3 | 2 | 407 | 12 | 432 | 0.0 | 546 |
| Msa1081240 | AT3G11900.1 | 63.895 | 421 | 137 | 3 | 2 | 407 | 12 | 432 | 0.0 | 546 |
| Msa1081240 | AT4G38250.1 | 37.559 | 426 | 223 | 8 | 3 | 404 | 22 | 428 | 2.00e-83 | 262 |
| Msa1081240 | AT2G42005.1 | 37.650 | 417 | 225 | 7 | 3 | 404 | 11 | 407 | 2.26e-80 | 253 |
| Msa1081240 | AT5G65990.1 | 37.136 | 412 | 230 | 7 | 3 | 404 | 27 | 419 | 4.80e-70 | 227 |
| Msa1081240 | AT5G15240.1 | 24.289 | 387 | 265 | 8 | 28 | 404 | 48 | 416 | 3.21e-29 | 118 |
| Msa1081240 | AT2G39130.2 | 25.424 | 413 | 278 | 10 | 1 | 404 | 150 | 541 | 4.24e-27 | 113 |
| Msa1081240 | AT2G39130.1 | 25.424 | 413 | 278 | 10 | 1 | 404 | 150 | 541 | 4.24e-27 | 113 |
| Msa1081240 | AT5G02180.1 | 26.442 | 416 | 267 | 12 | 4 | 404 | 150 | 541 | 9.65e-26 | 109 |
| Msa1081240 | AT5G02180.2 | 26.442 | 416 | 267 | 12 | 4 | 404 | 150 | 541 | 9.65e-26 | 109 |
| Msa1081240 | AT3G09340.1 | 27.047 | 403 | 255 | 13 | 17 | 404 | 138 | 516 | 1.32e-23 | 103 |
| Msa1081240 | AT3G09330.1 | 27.295 | 403 | 254 | 14 | 17 | 404 | 138 | 516 | 1.44e-23 | 103 |
| Msa1081240 | AT2G41190.1 | 23.645 | 406 | 276 | 10 | 14 | 407 | 148 | 531 | 4.95e-23 | 101 |
| Msa1081240 | AT5G15240.3 | 23.529 | 340 | 237 | 6 | 75 | 404 | 4 | 330 | 1.81e-22 | 97.8 |
| Msa1081240 | AT3G54830.2 | 27.027 | 370 | 229 | 11 | 10 | 360 | 147 | 494 | 2.22e-21 | 96.7 |
| Msa1081240 | AT3G54830.1 | 27.027 | 370 | 229 | 11 | 10 | 360 | 147 | 494 | 2.22e-21 | 96.7 |
| Msa1081240 | AT2G39130.3 | 28.315 | 279 | 178 | 8 | 3 | 273 | 152 | 416 | 4.27e-21 | 95.5 |
| Msa1081240 | AT3G28960.5 | 23.171 | 410 | 264 | 11 | 13 | 401 | 16 | 395 | 4.89e-21 | 94.7 |
| Msa1081240 | AT3G28960.2 | 23.171 | 410 | 264 | 11 | 13 | 401 | 16 | 395 | 4.89e-21 | 94.7 |
| Msa1081240 | AT3G28960.3 | 23.171 | 410 | 264 | 11 | 13 | 401 | 16 | 395 | 4.89e-21 | 94.7 |
| Msa1081240 | AT3G28960.1 | 23.171 | 410 | 264 | 11 | 13 | 401 | 16 | 395 | 4.89e-21 | 94.7 |
| Msa1081240 | AT5G02170.1 | 26.434 | 401 | 261 | 13 | 17 | 404 | 139 | 518 | 9.19e-21 | 94.7 |
| Msa1081240 | AT5G16740.1 | 23.133 | 415 | 288 | 10 | 2 | 403 | 16 | 412 | 2.66e-19 | 89.7 |
| Msa1081240 | AT3G28960.4 | 24.107 | 336 | 223 | 9 | 81 | 401 | 8 | 326 | 7.53e-18 | 84.3 |
| Msa1081240 | AT5G02170.2 | 25.067 | 375 | 234 | 13 | 17 | 386 | 139 | 471 | 1.38e-15 | 79.0 |
| Msa1081240 | AT2G41190.2 | 24.252 | 301 | 203 | 8 | 14 | 303 | 148 | 434 | 2.70e-15 | 78.2 |
| Msa1081240 | AT1G24400.1 | 21.212 | 363 | 251 | 11 | 1 | 343 | 19 | 366 | 2.04e-11 | 65.9 |
| Msa1081240 | AT1G48640.1 | 22.927 | 410 | 268 | 13 | 1 | 382 | 31 | 420 | 5.37e-11 | 64.7 |
Find 99 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTACAATCTCATTAAT+TGG | 0.119192 | 7_2:-81050417 | None:intergenic |
| ACATTTCACCTAAAATTATT+TGG | 0.180848 | 7_2:+81050627 | Msa1081240:CDS |
| AAAGTCTGAGCCAGCAATTT+TGG | 0.194534 | 7_2:-81049480 | None:intergenic |
| CGGATTGCTGGTTGGGTTGC+TGG | 0.195646 | 7_2:+81048320 | Msa1081240:CDS |
| ATGCTAGTACCAGTTGAAAT+TGG | 0.202789 | 7_2:+81049198 | Msa1081240:CDS |
| TTGAAGCTTTGAAGCTCTTT+TGG | 0.211711 | 7_2:-81048234 | None:intergenic |
| GCTTCATTTGTGCCAGAATT+TGG | 0.237616 | 7_2:+81050543 | Msa1081240:CDS |
| GAATGGATTCGTTGCTAAAA+AGG | 0.256311 | 7_2:-81048046 | None:intergenic |
| GTTGCGTATTTGGTATTTAT+TGG | 0.257482 | 7_2:+81049117 | Msa1081240:CDS |
| CCAATTGCGTGTCAGTAAAA+TGG | 0.260704 | 7_2:+81048187 | Msa1081240:exon |
| TGCAGGATCTGTTGCGTATT+TGG | 0.266618 | 7_2:+81049107 | Msa1081240:CDS |
| GCTTCAAAGCTTCAAACTTT+GGG | 0.276040 | 7_2:+81048242 | Msa1081240:CDS |
| TGTAGTTGGAACTGGTGTTT+TGG | 0.282817 | 7_2:+81048280 | Msa1081240:CDS |
| TTGCGTATTTGGTATTTATT+GGG | 0.311051 | 7_2:+81049118 | Msa1081240:CDS |
| AGCTTCAAAGCTTCAAACTT+TGG | 0.322711 | 7_2:+81048241 | Msa1081240:CDS |
| CGGCAATCACGTCGAACATT+GGG | 0.331674 | 7_2:+81049361 | Msa1081240:CDS |
| AATATCATTGTTACTGTAGT+TGG | 0.346950 | 7_2:+81048266 | Msa1081240:CDS |
| TTATGTGGTTACATGGCTTT+TGG | 0.362879 | 7_2:+81049537 | Msa1081240:CDS |
| AAGTAGGAGCATGCAATAAT+AGG | 0.366520 | 7_2:-81048375 | None:intergenic |
| CTTCTACAATCTCATTAATT+GGG | 0.367121 | 7_2:-81050416 | None:intergenic |
| AAACGAAAACCCATCCTCTA+AGG | 0.374336 | 7_2:-81049328 | None:intergenic |
| AGCTAAATTCCCAAAATTGC+TGG | 0.379222 | 7_2:+81049470 | Msa1081240:CDS |
| TGCTATTGTGGTGGTTGTGC+TGG | 0.379392 | 7_2:+81050512 | Msa1081240:CDS |
| GGAACTTACAACACAATTGT+TGG | 0.382897 | 7_2:+81050723 | Msa1081240:CDS |
| TTCTCTATGCCTCTGGCAAA+AGG | 0.387302 | 7_2:+81050653 | Msa1081240:CDS |
| TTGGCTCTTCTCTATGCCTC+TGG | 0.390599 | 7_2:+81050646 | Msa1081240:CDS |
| TGCTAGTACCAGTTGAAATT+GGG | 0.393945 | 7_2:+81049199 | Msa1081240:CDS |
| GACCTGGGTTATAGATGCTT+TGG | 0.394530 | 7_2:+81049036 | Msa1081240:CDS |
| TTAATTGGGTGTAACATGAT+TGG | 0.395355 | 7_2:-81050402 | None:intergenic |
| CACCGTCTTCATTCTCTTCA+CGG | 0.403011 | 7_2:+81047960 | None:intergenic |
| CCAATTAATGAGATTGTAGA+AGG | 0.404740 | 7_2:+81050417 | Msa1081240:CDS |
| GGTTGGGTTGCTGGCTCGCT+TGG | 0.405595 | 7_2:+81048329 | Msa1081240:CDS |
| GAGGCAAATACACCAAATTC+TGG | 0.406786 | 7_2:-81050555 | None:intergenic |
| TTAGTGGAATCAAGATCTTA+TGG | 0.409655 | 7_2:+81049012 | Msa1081240:CDS |
| GTTGCCATTTGCAGCAGGCA+TGG | 0.411945 | 7_2:+81049386 | Msa1081240:CDS |
| AGTTGTATAAAAGCTTAAAC+AGG | 0.416166 | 7_2:-81050780 | None:intergenic |
| CTGGTCATCTCTTGCCGTAC+AGG | 0.421828 | 7_2:+81049602 | Msa1081240:CDS |
| TATCCTTCATAGAATTCTCT+AGG | 0.427773 | 7_2:-81049446 | None:intergenic |
| TATAGATGCTTTGGAACATT+CGG | 0.429944 | 7_2:+81049045 | Msa1081240:CDS |
| TAATTGGGTGTAACATGATT+GGG | 0.432015 | 7_2:-81050401 | None:intergenic |
| GGTGTATTTGCCTCATTTGT+GGG | 0.432173 | 7_2:+81050564 | Msa1081240:CDS |
| ACAGCCATGCCTGCTGCAAA+TGG | 0.444083 | 7_2:-81049390 | None:intergenic |
| TGGTGTATTTGCCTCATTTG+TGG | 0.444849 | 7_2:+81050563 | Msa1081240:CDS |
| ATTGTTACTGTAGTTGGAAC+TGG | 0.462436 | 7_2:+81048272 | Msa1081240:CDS |
| ATTAAGAGTCACAATGTCTC+TGG | 0.463981 | 7_2:-81049568 | None:intergenic |
| TTGGAGAGGTGGAAAATGAA+TGG | 0.471448 | 7_2:-81048063 | None:intergenic |
| CATGACATCCCAATTTCAAC+TGG | 0.479088 | 7_2:-81049207 | None:intergenic |
| TCGCTTGGTGTTGCTATCGT+TGG | 0.480171 | 7_2:+81048344 | Msa1081240:CDS |
| CTATAACATGTGTTTGATCA+TGG | 0.483240 | 7_2:+81048110 | Msa1081240:five_prime_UTR |
| AGATGTACGAGTGGCCTTAG+AGG | 0.486364 | 7_2:+81049314 | Msa1081240:CDS |
| TAAGTAAAATTAGGGTTCAT+CGG | 0.488206 | 7_2:-81048133 | None:intergenic |
| GCAAGAGATGACCAGCTCCT+AGG | 0.507015 | 7_2:-81049594 | None:intergenic |
| GGTTTGGTGCAGAGATAAGT+TGG | 0.507286 | 7_2:+81048975 | Msa1081240:intron |
| TACGAGTGGCCTTAGAGGAT+GGG | 0.517363 | 7_2:+81049319 | Msa1081240:CDS |
| CAGTTGAAATTGGGATGTCA+TGG | 0.517566 | 7_2:+81049208 | Msa1081240:CDS |
| ACGGCAATCACGTCGAACAT+TGG | 0.520931 | 7_2:+81049360 | Msa1081240:CDS |
| CTCTTAATCTCCCTAGGAGC+TGG | 0.522429 | 7_2:+81049583 | Msa1081240:CDS |
| CTTCAAAGCTTCAAACTTTG+GGG | 0.529013 | 7_2:+81048243 | Msa1081240:CDS |
| CAAGAGATGACCAGCTCCTA+GGG | 0.531338 | 7_2:-81049593 | None:intergenic |
| ATCAAGATCTTATGGAGACC+TGG | 0.532309 | 7_2:+81049020 | Msa1081240:CDS |
| GTACGAGTGGCCTTAGAGGA+TGG | 0.538625 | 7_2:+81049318 | Msa1081240:CDS |
| GGCATCAGAAGAGCCGTTAG+TGG | 0.542217 | 7_2:+81048996 | Msa1081240:CDS |
| TGCCCTAGAGAATTCTATGA+AGG | 0.544325 | 7_2:+81049443 | Msa1081240:CDS |
| TATGAATGTCTTTACCTGTA+CGG | 0.553018 | 7_2:-81049616 | None:intergenic |
| ACCAGCAATCCGAAAAGCAA+AGG | 0.553289 | 7_2:-81048309 | None:intergenic |
| TGGTACTAGCATAAATATGT+AGG | 0.553563 | 7_2:-81049187 | None:intergenic |
| ATACATCAGTCGTGCTATTG+TGG | 0.553742 | 7_2:+81050500 | Msa1081240:CDS |
| AAAAGAAAGCATTGCACACA+AGG | 0.559468 | 7_2:-81050592 | None:intergenic |
| ATGACAGGTAGGATTGTGCC+TGG | 0.559822 | 7_2:+81050362 | Msa1081240:intron |
| TTCCAAAGCATCTATAACCC+AGG | 0.563102 | 7_2:-81049038 | None:intergenic |
| CCAGCAATCCGAAAAGCAAA+GGG | 0.563950 | 7_2:-81048308 | None:intergenic |
| ATCCTTCATAGAATTCTCTA+GGG | 0.566292 | 7_2:-81049445 | None:intergenic |
| TGTGTGCAATGTCCTAGCTA+TGG | 0.568520 | 7_2:+81049275 | Msa1081240:CDS |
| GATTATATTGTATTAATCAG+TGG | 0.569319 | 7_2:+81050681 | Msa1081240:CDS |
| TAAGATCTTGATTCCACTAA+CGG | 0.573803 | 7_2:-81049009 | None:intergenic |
| GACAGGTAGGATTGTGCCTG+GGG | 0.581164 | 7_2:+81050364 | Msa1081240:intron |
| CAAGGTACTCCCCACAAATG+AGG | 0.581605 | 7_2:-81050574 | None:intergenic |
| GATGCTTTGGAACATTCGGC+CGG | 0.581817 | 7_2:+81049049 | Msa1081240:CDS |
| TGATTAATACAATATAATCA+AGG | 0.583002 | 7_2:-81050677 | None:intergenic |
| ATCGTGGTAGCACAATGTGC+AGG | 0.583248 | 7_2:+81049090 | Msa1081240:CDS |
| TTGTGACTCTTAATCTCCCT+AGG | 0.586720 | 7_2:+81049577 | Msa1081240:CDS |
| GAAATTGGGATGTCATGGAT+AGG | 0.588699 | 7_2:+81049213 | Msa1081240:CDS |
| AGCTATGGGAATTGTAGTGA+AGG | 0.588848 | 7_2:+81049290 | Msa1081240:CDS |
| GTGTATTTGCCTCATTTGTG+GGG | 0.590797 | 7_2:+81050565 | Msa1081240:CDS |
| TCAAGATCTTATGGAGACCT+GGG | 0.593639 | 7_2:+81049021 | Msa1081240:CDS |
| TTATAAATTCTGTCAGATGC+CGG | 0.594196 | 7_2:-81049068 | None:intergenic |
| TGACAGGTAGGATTGTGCCT+GGG | 0.602408 | 7_2:+81050363 | Msa1081240:intron |
| TCACTACAATTCCCATAGCT+AGG | 0.603325 | 7_2:-81049287 | None:intergenic |
| GGCAATCACGTCGAACATTG+GGG | 0.609772 | 7_2:+81049362 | Msa1081240:CDS |
| GGAATGTGAACATAAGCCCC+AGG | 0.620030 | 7_2:-81050380 | None:intergenic |
| TCTGACAGAATTTATAATCG+TGG | 0.625652 | 7_2:+81049074 | Msa1081240:CDS |
| AATAATGATTCAATAAGACT+AGG | 0.630124 | 7_2:+81050465 | Msa1081240:CDS |
| TACTAGCATAAATATGTAGG+AGG | 0.630914 | 7_2:-81049184 | None:intergenic |
| GTGTGCAATGTCCTAGCTAT+GGG | 0.634606 | 7_2:+81049276 | Msa1081240:CDS |
| AATATGTAGGAGGCAAGCGA+TGG | 0.653012 | 7_2:-81049174 | None:intergenic |
| CAATCACGTCGAACATTGGG+GGG | 0.667136 | 7_2:+81049364 | Msa1081240:CDS |
| CATCAGTCGTGCTATTGTGG+TGG | 0.682697 | 7_2:+81050503 | Msa1081240:CDS |
| AGTGAAGGAAGATGTACGAG+TGG | 0.702478 | 7_2:+81049305 | Msa1081240:CDS |
| GCAATCACGTCGAACATTGG+GGG | 0.711818 | 7_2:+81049363 | Msa1081240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTAGTAAAAAAATAAAA+AGG | - | chr7_2:81048638-81048657 | None:intergenic | 10.0% |
| !! | ATCCAAATTTATGAAAAATT+GGG | - | chr7_2:81048164-81048183 | None:intergenic | 15.0% |
| !! | TATCCAAATTTATGAAAAAT+TGG | - | chr7_2:81048165-81048184 | None:intergenic | 15.0% |
| !!! | TTACTACTATTCTTTTTTAT+TGG | + | chr7_2:81048648-81048667 | Msa1081240:intron | 15.0% |
| !!! | TACTACTATTCTTTTTTATT+GGG | + | chr7_2:81048649-81048668 | Msa1081240:intron | 15.0% |
| !! | TGATTAATACAATATAATCA+AGG | - | chr7_2:81050680-81050699 | None:intergenic | 15.0% |
| !!! | GGGAATTTTAAGTAAAATTA+GGG | - | chr7_2:81048144-81048163 | None:intergenic | 20.0% |
| !!! | TGGGAATTTTAAGTAAAATT+AGG | - | chr7_2:81048145-81048164 | None:intergenic | 20.0% |
| !!! | TTCCCAATTTTTCATAAATT+TGG | + | chr7_2:81048159-81048178 | Msa1081240:five_prime_UTR | 20.0% |
| !!! | ACTACTATTCTTTTTTATTG+GGG | + | chr7_2:81048650-81048669 | Msa1081240:intron | 20.0% |
| !! | TAGATTATTCCATTACTAAA+AGG | + | chr7_2:81048712-81048731 | Msa1081240:intron | 20.0% |
| !!! | ACATTAACATCTCAAATTTT+AGG | + | chr7_2:81050212-81050231 | Msa1081240:intron | 20.0% |
| !!! | CATTAACATCTCAAATTTTA+GGG | + | chr7_2:81050213-81050232 | Msa1081240:intron | 20.0% |
| !!! | AATTTCGTTATTTTTCCTAT+TGG | + | chr7_2:81050307-81050326 | Msa1081240:intron | 20.0% |
| !! | AATAATGATTCAATAAGACT+AGG | + | chr7_2:81050465-81050484 | Msa1081240:CDS | 20.0% |
| !!! | AAATAATTTTAGGTGAAATG+TGG | - | chr7_2:81050628-81050647 | None:intergenic | 20.0% |
| !! | ACATTTCACCTAAAATTATT+TGG | + | chr7_2:81050627-81050646 | Msa1081240:CDS | 20.0% |
| !! | GATTATATTGTATTAATCAG+TGG | + | chr7_2:81050681-81050700 | Msa1081240:CDS | 20.0% |
| ! | TAAGTAAAATTAGGGTTCAT+CGG | - | chr7_2:81048136-81048155 | None:intergenic | 25.0% |
| ! | AATATCATTGTTACTGTAGT+TGG | + | chr7_2:81048266-81048285 | Msa1081240:CDS | 25.0% |
| ! | TATAACATTTGTGAAAGTAG+TGG | - | chr7_2:81048607-81048626 | None:intergenic | 25.0% |
| ! | TGGAATAATCTAATCTAAGT+CGG | - | chr7_2:81048704-81048723 | None:intergenic | 25.0% |
| !!! | AAATTGGTTCCTTTTAGTAA+TGG | - | chr7_2:81048724-81048743 | None:intergenic | 25.0% |
| !! | GGAACCAATTTAAAGTAATA+CGG | + | chr7_2:81048733-81048752 | Msa1081240:intron | 25.0% |
| ! | TGTTCCGTATTACTTTAAAT+TGG | - | chr7_2:81048740-81048759 | None:intergenic | 25.0% |
| !!! | GATTTTGATTTCATTGATAC+AGG | + | chr7_2:81048954-81048973 | Msa1081240:intron | 25.0% |
| ! | TTGCGTATTTGGTATTTATT+GGG | + | chr7_2:81049118-81049137 | Msa1081240:CDS | 25.0% |
| !!! | ATTTTTGGAATACAGAATCA+AGG | - | chr7_2:81049149-81049168 | None:intergenic | 25.0% |
| ! | GATTCTGTATTCCAAAAATA+TGG | + | chr7_2:81049150-81049169 | Msa1081240:CDS | 25.0% |
| ! | GTGAAAGCAAAATATATACA+TGG | - | chr7_2:81049652-81049671 | None:intergenic | 25.0% |
| ! | TGGAAATTTATTATGTGCAT+TGG | + | chr7_2:81050104-81050123 | Msa1081240:intron | 25.0% |
| ! | AATTTATCCTTAGATGTCTA+CGG | + | chr7_2:81050128-81050147 | Msa1081240:intron | 25.0% |
| ! | AAATTTCCAATGCACATAAT+TGG | - | chr7_2:81050093-81050112 | None:intergenic | 25.0% |
| !! | TTTGTTGTAGACATGTATAA+AGG | - | chr7_2:81050183-81050202 | None:intergenic | 25.0% |
| ! | AACAAAATATTATGAACTCC+TGG | - | chr7_2:81050275-81050294 | None:intergenic | 25.0% |
| ! | CTTCTACAATCTCATTAATT+GGG | - | chr7_2:81050419-81050438 | None:intergenic | 25.0% |
| !!! | GGATTATTTTTTGCTGTTTA+TGG | + | chr7_2:81050702-81050721 | Msa1081240:CDS | 25.0% |
| ! | AGTTGTATAAAAGCTTAAAC+AGG | - | chr7_2:81050783-81050802 | None:intergenic | 25.0% |
| CTATAACATGTGTTTGATCA+TGG | + | chr7_2:81048110-81048129 | Msa1081240:five_prime_UTR | 30.0% | |
| !! | TCTTTTGGAAGATAACAAAG+GGG | - | chr7_2:81048222-81048241 | None:intergenic | 30.0% |
| !! | CTCTTTTGGAAGATAACAAA+GGG | - | chr7_2:81048223-81048242 | None:intergenic | 30.0% |
| ATGAGCATAGAATTTGATTC+AGG | + | chr7_2:81048496-81048515 | Msa1081240:intron | 30.0% | |
| ATTCAGGTAGGTTTCAATAT+TGG | + | chr7_2:81048512-81048531 | Msa1081240:intron | 30.0% | |
| AAATGCATCACGCATAATAA+TGG | - | chr7_2:81048784-81048803 | None:intergenic | 30.0% | |
| TTCATTATATGCAGGGAATT+CGG | + | chr7_2:81048906-81048925 | Msa1081240:intron | 30.0% | |
| TGATTTCATTGATACAGGTT+TGG | + | chr7_2:81048959-81048978 | Msa1081240:intron | 30.0% | |
| TAAGATCTTGATTCCACTAA+CGG | - | chr7_2:81049012-81049031 | None:intergenic | 30.0% | |
| TTAGTGGAATCAAGATCTTA+TGG | + | chr7_2:81049012-81049031 | Msa1081240:CDS | 30.0% | |
| !! | TATAGATGCTTTGGAACATT+CGG | + | chr7_2:81049045-81049064 | Msa1081240:CDS | 30.0% |
| TTATAAATTCTGTCAGATGC+CGG | - | chr7_2:81049071-81049090 | None:intergenic | 30.0% | |
| TCTGACAGAATTTATAATCG+TGG | + | chr7_2:81049074-81049093 | Msa1081240:CDS | 30.0% | |
| GTTGCGTATTTGGTATTTAT+TGG | + | chr7_2:81049117-81049136 | Msa1081240:CDS | 30.0% | |
| TACTAGCATAAATATGTAGG+AGG | - | chr7_2:81049187-81049206 | None:intergenic | 30.0% | |
| TGGTACTAGCATAAATATGT+AGG | - | chr7_2:81049190-81049209 | None:intergenic | 30.0% | |
| ACATCAGCAAAAATGCTAAA+TGG | - | chr7_2:81049258-81049277 | None:intergenic | 30.0% | |
| !!! | ATGGCTGTTTTTTGTTTTGA+GGG | + | chr7_2:81049405-81049424 | Msa1081240:CDS | 30.0% |
| ATCCTTCATAGAATTCTCTA+GGG | - | chr7_2:81049448-81049467 | None:intergenic | 30.0% | |
| TATCCTTCATAGAATTCTCT+AGG | - | chr7_2:81049449-81049468 | None:intergenic | 30.0% | |
| ! | ACACTCGTATACATTCTTTT+TGG | + | chr7_2:81049513-81049532 | Msa1081240:CDS | 30.0% |
| ! | CACTCGTATACATTCTTTTT+GGG | + | chr7_2:81049514-81049533 | Msa1081240:CDS | 30.0% |
| !!! | TACATTCTTTTTGGGTTATG+TGG | + | chr7_2:81049522-81049541 | Msa1081240:CDS | 30.0% |
| TATGAATGTCTTTACCTGTA+CGG | - | chr7_2:81049619-81049638 | None:intergenic | 30.0% | |
| AGCAGTATACTCAAATAACA+TGG | - | chr7_2:81049787-81049806 | None:intergenic | 30.0% | |
| ! | ATGTTATTTGAGTATACTGC+TGG | + | chr7_2:81049786-81049805 | Msa1081240:intron | 30.0% |
| ! | GTTTGGTTGCTTTAACTATA+TGG | + | chr7_2:81049836-81049855 | Msa1081240:intron | 30.0% |
| ! | AACTATATGGTCTTCACTTT+TGG | + | chr7_2:81049849-81049868 | Msa1081240:intron | 30.0% |
| !! | ACTATATGGTCTTCACTTTT+GGG | + | chr7_2:81049850-81049869 | Msa1081240:intron | 30.0% |
| TGTAAAACAGATTAACTGAC+AGG | - | chr7_2:81049896-81049915 | None:intergenic | 30.0% | |
| !! | GCATTTTATATGATGATGAC+AGG | + | chr7_2:81050347-81050366 | Msa1081240:intron | 30.0% |
| ! | TTTATATGATGATGACAGGT+AGG | + | chr7_2:81050351-81050370 | Msa1081240:intron | 30.0% |
| TAATTGGGTGTAACATGATT+GGG | - | chr7_2:81050404-81050423 | None:intergenic | 30.0% | |
| TTAATTGGGTGTAACATGAT+TGG | - | chr7_2:81050405-81050424 | None:intergenic | 30.0% | |
| CCTTCTACAATCTCATTAAT+TGG | - | chr7_2:81050420-81050439 | None:intergenic | 30.0% | |
| CCAATTAATGAGATTGTAGA+AGG | + | chr7_2:81050417-81050436 | Msa1081240:CDS | 30.0% | |
| ! | GAGAAGAGCCAAATAATTTT+AGG | - | chr7_2:81050638-81050657 | None:intergenic | 30.0% |
| ! | GAATGGATTCGTTGCTAAAA+AGG | - | chr7_2:81048049-81048068 | None:intergenic | 35.0% |
| !!! | TGTTTTTTGATTTGGAGAGG+TGG | - | chr7_2:81048077-81048096 | None:intergenic | 35.0% |
| !!! | ACGTGTTTTTTGATTTGGAG+AGG | - | chr7_2:81048080-81048099 | None:intergenic | 35.0% |
| !!! | GAAGCACGTGTTTTTTGATT+TGG | - | chr7_2:81048085-81048104 | None:intergenic | 35.0% |
| ! | ATTTTACTGACACGCAATTG+GGG | - | chr7_2:81048188-81048207 | None:intergenic | 35.0% |
| ! | CATTTTACTGACACGCAATT+GGG | - | chr7_2:81048189-81048208 | None:intergenic | 35.0% |
| !! | GCTCTTTTGGAAGATAACAA+AGG | - | chr7_2:81048224-81048243 | None:intergenic | 35.0% |
| !!! | TTGAAGCTTTGAAGCTCTTT+TGG | - | chr7_2:81048237-81048256 | None:intergenic | 35.0% |
| AGCTTCAAAGCTTCAAACTT+TGG | + | chr7_2:81048241-81048260 | Msa1081240:CDS | 35.0% | |
| GCTTCAAAGCTTCAAACTTT+GGG | + | chr7_2:81048242-81048261 | Msa1081240:CDS | 35.0% | |
| CTTCAAAGCTTCAAACTTTG+GGG | + | chr7_2:81048243-81048262 | Msa1081240:CDS | 35.0% | |
| ATTGTTACTGTAGTTGGAAC+TGG | + | chr7_2:81048272-81048291 | Msa1081240:CDS | 35.0% | |
| ! | AAGTAGGAGCATGCAATAAT+AGG | - | chr7_2:81048378-81048397 | None:intergenic | 35.0% |
| GCATAGAATTTGATTCAGGT+AGG | + | chr7_2:81048500-81048519 | Msa1081240:intron | 35.0% | |
| CGTGATGCATTTATTGATCT+TGG | + | chr7_2:81048792-81048811 | Msa1081240:intron | 35.0% | |
| TCCGAGTTTCATTATATGCA+GGG | + | chr7_2:81048899-81048918 | Msa1081240:intron | 35.0% | |
| TCCCTGCATATAATGAAACT+CGG | - | chr7_2:81048903-81048922 | None:intergenic | 35.0% | |
| ATGCTAGTACCAGTTGAAAT+TGG | + | chr7_2:81049198-81049217 | Msa1081240:CDS | 35.0% | |
| TGCTAGTACCAGTTGAAATT+GGG | + | chr7_2:81049199-81049218 | Msa1081240:CDS | 35.0% | |
| ! | ATGGGTTTTCGTTTAGAGAA+AGG | + | chr7_2:81049337-81049356 | Msa1081240:CDS | 35.0% |
| ! | GTTTTCGTTTAGAGAAAGGA+CGG | + | chr7_2:81049341-81049360 | Msa1081240:CDS | 35.0% |
| !!! | CATGGCTGTTTTTTGTTTTG+AGG | + | chr7_2:81049404-81049423 | Msa1081240:CDS | 35.0% |
| !!! | TGGCTGTTTTTTGTTTTGAG+GGG | + | chr7_2:81049406-81049425 | Msa1081240:CDS | 35.0% |
| !!! | GTTTTTTGTTTTGAGGGGTT+TGG | + | chr7_2:81049411-81049430 | Msa1081240:CDS | 35.0% |
| AGCTAAATTCCCAAAATTGC+TGG | + | chr7_2:81049470-81049489 | Msa1081240:CDS | 35.0% | |
| !!! | TTTTGGGTTATGTGGTTACA+TGG | + | chr7_2:81049530-81049549 | Msa1081240:CDS | 35.0% |
| ! | TTATGTGGTTACATGGCTTT+TGG | + | chr7_2:81049537-81049556 | Msa1081240:CDS | 35.0% |
| ATTAAGAGTCACAATGTCTC+TGG | - | chr7_2:81049571-81049590 | None:intergenic | 35.0% | |
| !! | TTTGGGTTGTATGTGTCAAT+TGG | + | chr7_2:81049867-81049886 | Msa1081240:intron | 35.0% |
| GTAGCACATATTATGTGCAT+TGG | + | chr7_2:81050084-81050103 | Msa1081240:intron | 35.0% | |
| ATATTATGAACTCCTGGCAA+TGG | - | chr7_2:81050269-81050288 | None:intergenic | 35.0% | |
| GAAGTCAAACATTGACCAAT+AGG | - | chr7_2:81050325-81050344 | None:intergenic | 35.0% | |
| !! | AAAAGAAAGCATTGCACACA+AGG | - | chr7_2:81050595-81050614 | None:intergenic | 35.0% |
| !! | AATTTTAGGTGAAATGTGGC+TGG | - | chr7_2:81050624-81050643 | None:intergenic | 35.0% |
| GGAACTTACAACACAATTGT+TGG | + | chr7_2:81050723-81050742 | Msa1081240:CDS | 35.0% | |
| TTGGAGAGGTGGAAAATGAA+TGG | - | chr7_2:81048066-81048085 | None:intergenic | 40.0% | |
| ! | CCATTTTACTGACACGCAAT+TGG | - | chr7_2:81048190-81048209 | None:intergenic | 40.0% |
| CCAATTGCGTGTCAGTAAAA+TGG | + | chr7_2:81048187-81048206 | Msa1081240:exon | 40.0% | |
| ! | TGTAGTTGGAACTGGTGTTT+TGG | + | chr7_2:81048280-81048299 | Msa1081240:CDS | 40.0% |
| ! | GTAGTTGGAACTGGTGTTTT+GGG | + | chr7_2:81048281-81048300 | Msa1081240:CDS | 40.0% |
| !! | TGGGTTTACCCTTTGCTTTT+CGG | + | chr7_2:81048300-81048319 | Msa1081240:CDS | 40.0% |
| TTATTGCATGCTCCTACTTG+TGG | + | chr7_2:81048379-81048398 | Msa1081240:intron | 40.0% | |
| TATTGCATGCTCCTACTTGT+GGG | + | chr7_2:81048380-81048399 | Msa1081240:intron | 40.0% | |
| TAGAAAGATGACCCACAAGT+AGG | - | chr7_2:81048394-81048413 | None:intergenic | 40.0% | |
| ! | TGTTGTGTACTTCACTGACT+TGG | + | chr7_2:81048677-81048696 | Msa1081240:intron | 40.0% |
| CTCCGAGTTTCATTATATGC+AGG | + | chr7_2:81048898-81048917 | Msa1081240:intron | 40.0% | |
| ! | GTTCTTGAGTTGTCATTGCA+TGG | + | chr7_2:81048928-81048947 | Msa1081240:intron | 40.0% |
| ATCAAGATCTTATGGAGACC+TGG | + | chr7_2:81049020-81049039 | Msa1081240:CDS | 40.0% | |
| TCAAGATCTTATGGAGACCT+GGG | + | chr7_2:81049021-81049040 | Msa1081240:CDS | 40.0% | |
| ! | TTCCAAAGCATCTATAACCC+AGG | - | chr7_2:81049041-81049060 | None:intergenic | 40.0% |
| ! | CAAGCGATGGTCCATATTTT+TGG | - | chr7_2:81049164-81049183 | None:intergenic | 40.0% |
| CATGACATCCCAATTTCAAC+TGG | - | chr7_2:81049210-81049229 | None:intergenic | 40.0% | |
| CAGTTGAAATTGGGATGTCA+TGG | + | chr7_2:81049208-81049227 | Msa1081240:CDS | 40.0% | |
| GAAATTGGGATGTCATGGAT+AGG | + | chr7_2:81049213-81049232 | Msa1081240:CDS | 40.0% | |
| TCACTACAATTCCCATAGCT+AGG | - | chr7_2:81049290-81049309 | None:intergenic | 40.0% | |
| AGCTATGGGAATTGTAGTGA+AGG | + | chr7_2:81049290-81049309 | Msa1081240:CDS | 40.0% | |
| AAACGAAAACCCATCCTCTA+AGG | - | chr7_2:81049331-81049350 | None:intergenic | 40.0% | |
| TGCCCTAGAGAATTCTATGA+AGG | + | chr7_2:81049443-81049462 | Msa1081240:CDS | 40.0% | |
| ! | AAGTCTGAGCCAGCAATTTT+GGG | - | chr7_2:81049482-81049501 | None:intergenic | 40.0% |
| ! | AAAGTCTGAGCCAGCAATTT+TGG | - | chr7_2:81049483-81049502 | None:intergenic | 40.0% |
| TTGTGACTCTTAATCTCCCT+AGG | + | chr7_2:81049577-81049596 | Msa1081240:CDS | 40.0% | |
| ! | TGAACAAAGAGCATGAGAAG+AGG | - | chr7_2:81049762-81049781 | None:intergenic | 40.0% |
| !! | TTGAAGGTGATGATGGTGTT+TGG | + | chr7_2:81049819-81049838 | Msa1081240:intron | 40.0% |
| TTGTCTATGTGGTCACATGT+TGG | + | chr7_2:81049952-81049971 | Msa1081240:intron | 40.0% | |
| TAGTTGTGTATGTCCTGCTT+TGG | + | chr7_2:81050061-81050080 | Msa1081240:intron | 40.0% | |
| AGTTGTGTATGTCCTGCTTT+GGG | + | chr7_2:81050062-81050081 | Msa1081240:intron | 40.0% | |
| TAATATGTGCTACCCAAAGC+AGG | - | chr7_2:81050077-81050096 | None:intergenic | 40.0% | |
| GGCAAACCAATTATGTGCAT+TGG | + | chr7_2:81050149-81050168 | Msa1081240:intron | 40.0% | |
| ! | ATACATCAGTCGTGCTATTG+TGG | + | chr7_2:81050500-81050519 | Msa1081240:CDS | 40.0% |
| GCTTCATTTGTGCCAGAATT+TGG | + | chr7_2:81050543-81050562 | Msa1081240:CDS | 40.0% | |
| GAGGCAAATACACCAAATTC+TGG | - | chr7_2:81050558-81050577 | None:intergenic | 40.0% | |
| TGGTGTATTTGCCTCATTTG+TGG | + | chr7_2:81050563-81050582 | Msa1081240:CDS | 40.0% | |
| GGTGTATTTGCCTCATTTGT+GGG | + | chr7_2:81050564-81050583 | Msa1081240:CDS | 40.0% | |
| GTGTATTTGCCTCATTTGTG+GGG | + | chr7_2:81050565-81050584 | Msa1081240:CDS | 40.0% | |
| CCAGCAATCCGAAAAGCAAA+GGG | - | chr7_2:81048311-81048330 | None:intergenic | 45.0% | |
| ACCAGCAATCCGAAAAGCAA+AGG | - | chr7_2:81048312-81048331 | None:intergenic | 45.0% | |
| !! | TTGCTTTTCGGATTGCTGGT+TGG | + | chr7_2:81048312-81048331 | Msa1081240:CDS | 45.0% |
| !! | TGCTTTTCGGATTGCTGGTT+GGG | + | chr7_2:81048313-81048332 | Msa1081240:CDS | 45.0% |
| GGCTATAGCTCAGATAGCTT+TGG | + | chr7_2:81048533-81048552 | Msa1081240:intron | 45.0% | |
| GCATCACGCATAATAATGGC+AGG | - | chr7_2:81048780-81048799 | None:intergenic | 45.0% | |
| !! | CTCAGCCATCGATTTCAGAT+CGG | - | chr7_2:81048860-81048879 | None:intergenic | 45.0% |
| !! | GGTTTGGTGCAGAGATAAGT+TGG | + | chr7_2:81048975-81048994 | Msa1081240:intron | 45.0% |
| GACCTGGGTTATAGATGCTT+TGG | + | chr7_2:81049036-81049055 | Msa1081240:CDS | 45.0% | |
| TGCAGGATCTGTTGCGTATT+TGG | + | chr7_2:81049107-81049126 | Msa1081240:CDS | 45.0% | |
| AATATGTAGGAGGCAAGCGA+TGG | - | chr7_2:81049177-81049196 | None:intergenic | 45.0% | |
| TGTGTGCAATGTCCTAGCTA+TGG | + | chr7_2:81049275-81049294 | Msa1081240:CDS | 45.0% | |
| GTGTGCAATGTCCTAGCTAT+GGG | + | chr7_2:81049276-81049295 | Msa1081240:CDS | 45.0% | |
| AGTGAAGGAAGATGTACGAG+TGG | + | chr7_2:81049305-81049324 | Msa1081240:CDS | 45.0% | |
| !!! | TTGCTGGCTCAGACTTTTAG+TGG | + | chr7_2:81049486-81049505 | Msa1081240:CDS | 45.0% |
| CATCATCACCTTCAAGCACT+AGG | - | chr7_2:81049814-81049833 | None:intergenic | 45.0% | |
| CTAGTGCTTGAAGGTGATGA+TGG | + | chr7_2:81049812-81049831 | Msa1081240:intron | 45.0% | |
| ACGCTTCGTGGACAGAATTT+AGG | - | chr7_2:81049928-81049947 | None:intergenic | 45.0% | |
| ATAGACAAACACACGCTTCG+TGG | - | chr7_2:81049940-81049959 | None:intergenic | 45.0% | |
| GAAGCGTGTGTTTGTCTATG+TGG | + | chr7_2:81049941-81049960 | Msa1081240:intron | 45.0% | |
| GAACGTGCTTGTAAGCATGT+TGG | - | chr7_2:81050005-81050024 | None:intergenic | 45.0% | |
| ! | TGGTTTGCCGTAGACATCTA+AGG | - | chr7_2:81050138-81050157 | None:intergenic | 45.0% |
| ATGAGAAAGCTTCCATTGCC+AGG | + | chr7_2:81050254-81050273 | Msa1081240:intron | 45.0% | |
| TTCTCTATGCCTCTGGCAAA+AGG | + | chr7_2:81050653-81050672 | Msa1081240:CDS | 45.0% | |
| ! | AATCAAGGACCTTTTGCCAG+AGG | - | chr7_2:81050665-81050684 | None:intergenic | 45.0% |
| !! | CCCTTTGCTTTTCGGATTGC+TGG | + | chr7_2:81048308-81048327 | Msa1081240:CDS | 50.0% |
| !! | TCGCTTGGTGTTGCTATCGT+TGG | + | chr7_2:81048344-81048363 | Msa1081240:CDS | 50.0% |
| ! | GTCGACCGATCTGAAATCGA+TGG | + | chr7_2:81048852-81048871 | Msa1081240:intron | 50.0% |
| !! | GATGCTTTGGAACATTCGGC+CGG | + | chr7_2:81049049-81049068 | Msa1081240:CDS | 50.0% |
| ATCGTGGTAGCACAATGTGC+AGG | + | chr7_2:81049090-81049109 | Msa1081240:CDS | 50.0% | |
| ! | AGATGTACGAGTGGCCTTAG+AGG | + | chr7_2:81049314-81049333 | Msa1081240:CDS | 50.0% |
| ! | TACGAGTGGCCTTAGAGGAT+GGG | + | chr7_2:81049319-81049338 | Msa1081240:CDS | 50.0% |
| ACGGCAATCACGTCGAACAT+TGG | + | chr7_2:81049360-81049379 | Msa1081240:CDS | 50.0% | |
| CGGCAATCACGTCGAACATT+GGG | + | chr7_2:81049361-81049380 | Msa1081240:CDS | 50.0% | |
| GGCAATCACGTCGAACATTG+GGG | + | chr7_2:81049362-81049381 | Msa1081240:CDS | 50.0% | |
| GCAATCACGTCGAACATTGG+GGG | + | chr7_2:81049363-81049382 | Msa1081240:CDS | 50.0% | |
| CAATCACGTCGAACATTGGG+GGG | + | chr7_2:81049364-81049383 | Msa1081240:CDS | 50.0% | |
| CTCTTAATCTCCCTAGGAGC+TGG | + | chr7_2:81049583-81049602 | Msa1081240:CDS | 50.0% | |
| CAAGAGATGACCAGCTCCTA+GGG | - | chr7_2:81049596-81049615 | None:intergenic | 50.0% | |
| TGCTGGTACCTAGTGCTTGA+AGG | + | chr7_2:81049803-81049822 | Msa1081240:intron | 50.0% | |
| ATGACAGGTAGGATTGTGCC+TGG | + | chr7_2:81050362-81050381 | Msa1081240:intron | 50.0% | |
| TGACAGGTAGGATTGTGCCT+GGG | + | chr7_2:81050363-81050382 | Msa1081240:intron | 50.0% | |
| GGAATGTGAACATAAGCCCC+AGG | - | chr7_2:81050383-81050402 | None:intergenic | 50.0% | |
| ! | CATCAGTCGTGCTATTGTGG+TGG | + | chr7_2:81050503-81050522 | Msa1081240:CDS | 50.0% |
| TGCTATTGTGGTGGTTGTGC+TGG | + | chr7_2:81050512-81050531 | Msa1081240:CDS | 50.0% | |
| ! | CAAGGTACTCCCCACAAATG+AGG | - | chr7_2:81050577-81050596 | None:intergenic | 50.0% |
| ! | TTGGCTCTTCTCTATGCCTC+TGG | + | chr7_2:81050646-81050665 | Msa1081240:CDS | 50.0% |
| GGCATCAGAAGAGCCGTTAG+TGG | + | chr7_2:81048996-81049015 | Msa1081240:CDS | 55.0% | |
| ! | GTACGAGTGGCCTTAGAGGA+TGG | + | chr7_2:81049318-81049337 | Msa1081240:CDS | 55.0% |
| ! | GTTGCCATTTGCAGCAGGCA+TGG | + | chr7_2:81049386-81049405 | Msa1081240:CDS | 55.0% |
| ACAGCCATGCCTGCTGCAAA+TGG | - | chr7_2:81049393-81049412 | None:intergenic | 55.0% | |
| GCAAGAGATGACCAGCTCCT+AGG | - | chr7_2:81049597-81049616 | None:intergenic | 55.0% | |
| CTGGTCATCTCTTGCCGTAC+AGG | + | chr7_2:81049602-81049621 | Msa1081240:CDS | 55.0% | |
| TTGGACACGAAGCCTTGCAG+TGG | + | chr7_2:81049971-81049990 | Msa1081240:intron | 55.0% | |
| TTGGACTCAACGCCACTGCA+AGG | - | chr7_2:81049986-81050005 | None:intergenic | 55.0% | |
| GACAGGTAGGATTGTGCCTG+GGG | + | chr7_2:81050364-81050383 | Msa1081240:intron | 55.0% | |
| ! | CGGATTGCTGGTTGGGTTGC+TGG | + | chr7_2:81048320-81048339 | Msa1081240:CDS | 60.0% |
| !! | GGTTGGGTTGCTGGCTCGCT+TGG | + | chr7_2:81048329-81048348 | Msa1081240:CDS | 65.0% |
| ! | GGGGGGTTGCCATTTGCAGC+AGG | + | chr7_2:81049381-81049400 | Msa1081240:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 81047966 | 81050864 | 81047966 | ID=Msa1081240;Name=Msa1081240 |
| chr7_2 | mRNA | 81047966 | 81050864 | 81047966 | ID=Msa1081240-mRNA-1;Parent=Msa1081240;Name=Msa1081240-mRNA-1;_AED=0.08;_eAED=0.08;_QI=240|1|1|1|1|1|3|112|407 |
| chr7_2 | exon | 81047966 | 81048397 | 81047966 | ID=Msa1081240-mRNA-1:exon:20625;Parent=Msa1081240-mRNA-1 |
| chr7_2 | exon | 81048976 | 81049623 | 81048976 | ID=Msa1081240-mRNA-1:exon:20626;Parent=Msa1081240-mRNA-1 |
| chr7_2 | exon | 81050369 | 81050864 | 81050369 | ID=Msa1081240-mRNA-1:exon:20627;Parent=Msa1081240-mRNA-1 |
| chr7_2 | five_prime_UTR | 81047966 | 81048205 | 81047966 | ID=Msa1081240-mRNA-1:five_prime_utr;Parent=Msa1081240-mRNA-1 |
| chr7_2 | CDS | 81048206 | 81048397 | 81048206 | ID=Msa1081240-mRNA-1:cds;Parent=Msa1081240-mRNA-1 |
| chr7_2 | CDS | 81048976 | 81049623 | 81048976 | ID=Msa1081240-mRNA-1:cds;Parent=Msa1081240-mRNA-1 |
| chr7_2 | CDS | 81050369 | 81050752 | 81050369 | ID=Msa1081240-mRNA-1:cds;Parent=Msa1081240-mRNA-1 |
| chr7_2 | three_prime_UTR | 81050753 | 81050864 | 81050753 | ID=Msa1081240-mRNA-1:three_prime_utr;Parent=Msa1081240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
