AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0249550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249550 MtrunA17_Chr2g0305901 97.955 489 10 0 1 489 1 489 0.0 952
Msa0249550 MtrunA17_Chr4g0020881 54.886 481 187 4 24 487 31 498 0.0 526
Msa0249550 MtrunA17_Chr4g0055641 55.236 487 207 4 3 489 2 477 2.87e-174 499
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0249550 AT2G13100.4 72.541 488 129 2 4 489 2 486 0.0 712
Msa0249550 AT2G13100.1 72.541 488 129 2 4 489 2 486 0.0 712
Msa0249550 AT3G47420.2 53.740 508 203 5 1 487 5 501 0.0 518
Msa0249550 AT3G47420.1 53.740 508 203 5 1 487 5 501 0.0 518
Msa0249550 AT3G47420.3 53.740 508 203 5 1 487 5 501 0.0 518
Msa0249550 AT1G30560.1 51.527 491 210 4 16 489 10 489 9.61e-178 509
Msa0249550 AT4G17550.1 50.854 527 217 3 1 486 1 526 1.46e-174 502
Msa0249550 AT4G25220.1 53.348 463 197 4 30 489 36 482 8.38e-172 493
Msa0249550 AT2G13100.2 73.092 249 64 1 241 489 89 334 2.43e-124 366
Msa0249550 AT2G13100.2 70.732 82 24 0 4 85 2 83 1.23e-31 124
Msa0249550 AT2G13100.3 77.982 218 48 0 272 489 83 300 3.94e-117 347
Msa0249550 AT2G13100.3 67.045 88 29 0 4 91 2 89 2.79e-32 125

Find 149 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATAAGAGAGAAGCTTTC+AGG 0.190851 2_2:-36321521 Msa0249550:CDS
AGAGATTCTAATATTAATTT+AGG 0.190955 2_2:-36323161 Msa0249550:five_prime_UTR
TTACTCCATTGGCATGTATT+TGG 0.217319 2_2:-36322815 Msa0249550:CDS
ATCACCTTGATGTTTCTTTC+TGG 0.224719 2_2:-36321800 Msa0249550:CDS
TGTTGTGAATCCGGTGGATA+TGG 0.256289 2_2:-36322419 Msa0249550:CDS
TGTTGGCACCAAATCTTAAA+TGG 0.258521 2_2:+36323235 None:intergenic
TTGAGGTTGTTTCTTGTGTT+TGG 0.258719 2_2:-36322766 Msa0249550:CDS
TTCCATCACCATTTAAGATT+TGG 0.266246 2_2:-36323243 Msa0249550:five_prime_UTR
CCTTGTGTTGTTGCAGTTGT+TGG 0.271567 2_2:-36322622 Msa0249550:CDS
CAGTTGTTGGGAATTGGCTT+GGG 0.271735 2_2:-36322609 Msa0249550:CDS
TAGTATTGTTAAAAGTGTTC+TGG 0.280648 2_2:-36322944 Msa0249550:CDS
TGATAATAAGAACACATATT+TGG 0.281967 2_2:+36323010 None:intergenic
TTTGATATTGGAGGAGTTCT+AGG 0.290006 2_2:-36321953 Msa0249550:CDS
GGTTATTGCTTCGGGTGTTT+TGG 0.290922 2_2:-36322518 Msa0249550:CDS
CTCATTTCAATTTCCATTCC+AGG 0.291532 2_2:+36322385 None:intergenic
ATCAAAGAGGGGATTGATAA+TGG 0.292694 2_2:-36322584 Msa0249550:CDS
TCAAATTCTTCGTCTGCTAT+TGG 0.299829 2_2:-36322283 Msa0249550:CDS
TTGCTTACACTTTCTTGTAT+TGG 0.304564 2_2:-36322192 Msa0249550:CDS
AAAACCTTTGCGTGGAAAAC+CGG 0.307123 2_2:+36323308 None:intergenic
CATTGGTTCGGTTATTGCTT+CGG 0.314100 2_2:-36322527 Msa0249550:CDS
CTTTCAACAATATTTGATAT+TGG 0.314253 2_2:-36321965 Msa0249550:CDS
TGTGGAGTGTTTCAGTCAAT+TGG 0.315612 2_2:-36322649 Msa0249550:CDS
ACCTGTGTGCCTTATGTAGA+AGG 0.333717 2_2:+36322165 None:intergenic
TGAGGTTGTTTCTTGTGTTT+GGG 0.335721 2_2:-36322765 Msa0249550:CDS
TGGTTTGATGTTCATGTGTT+GGG 0.336491 2_2:-36322697 Msa0249550:CDS
GTGTTGGTTGCAGCGGTTGC+TGG 0.336822 2_2:-36322019 Msa0249550:intron
GCTTTAGTGGTGGGAATTCT+CGG 0.342732 2_2:-36321712 Msa0249550:CDS
AACCAATTCAACCCTTGATT+CGG 0.343395 2_2:-36322908 Msa0249550:CDS
GTTCCCCGAGTTCCATTAAA+AGG 0.343662 2_2:+36322877 None:intergenic
GGTTCTGTTGGAGCTGCTCT+TGG 0.349690 2_2:-36321653 Msa0249550:CDS
CACATATTTGGTGGAATAGT+AGG 0.350389 2_2:+36323022 None:intergenic
TCTTAAATGGTGATGGAAAT+TGG 0.355213 2_2:+36323248 None:intergenic
GGGGATTGATAATGGGGATA+TGG 0.364452 2_2:-36322576 Msa0249550:CDS
ACCAATTCAACCCTTGATTC+GGG 0.365317 2_2:-36322907 Msa0249550:CDS
TCAAAGAGGGGATTGATAAT+GGG 0.369497 2_2:-36322583 Msa0249550:CDS
TGATTCCATTCTTACTCATC+AGG 0.373030 2_2:+36323113 None:intergenic
GGTTGGTCGTTTGTGGTGCC+TGG 0.375096 2_2:-36322484 Msa0249550:CDS
ACCCGAATCAAGGGTTGAAT+TGG 0.376330 2_2:+36322906 None:intergenic
CTCGGTACGCAGGGCTTTAG+TGG 0.382958 2_2:-36321725 Msa0249550:CDS
GCAGTTGTTGGGAATTGGCT+TGG 0.384000 2_2:-36322610 Msa0249550:CDS
GTTTCTTGTGTTTGGGATGG+TGG 0.396297 2_2:-36322758 Msa0249550:CDS
TTGTTGCAGTTGTTGGGAAT+TGG 0.403901 2_2:-36322615 Msa0249550:CDS
TCCATTGGCATGTATTTGGC+TGG 0.414022 2_2:-36322811 Msa0249550:CDS
TGGCTGGTCATGTTGGTGAT+AGG 0.414837 2_2:-36322795 Msa0249550:CDS
ATTGGTTCGGTTATTGCTTC+GGG 0.416295 2_2:-36322526 Msa0249550:CDS
AGTATTGTTAAAAGTGTTCT+GGG 0.416808 2_2:-36322943 Msa0249550:CDS
CTTGTGTTGTTGCAGTTGTT+GGG 0.419466 2_2:-36322621 Msa0249550:CDS
GAATTTGAAATCGAACTATC+AGG 0.420709 2_2:+36322298 None:intergenic
ACGAAAATGATCAAAATTCC+AGG 0.423719 2_2:+36322466 None:intergenic
ACCTCGGTTGGGAATATCAT+TGG 0.423859 2_2:-36322544 Msa0249550:CDS
TCTGTTTCTTGTTGTGAATC+CGG 0.429267 2_2:-36322428 Msa0249550:CDS
ATTGGTTACCCTTCTACATA+AGG 0.433887 2_2:-36322174 Msa0249550:CDS
CTGGTTTGATGTTCATGTGT+TGG 0.438300 2_2:-36322698 Msa0249550:CDS
TGGATGGGGTTGGTCGTTTG+TGG 0.439831 2_2:-36322491 Msa0249550:CDS
AACACGACTTACAAGATTGT+TGG 0.442880 2_2:+36323218 None:intergenic
TTTCTTACTTCTTACTCCAT+TGG 0.444854 2_2:-36322826 Msa0249550:CDS
ACTGTTACTGCAATCATTGA+TGG 0.445070 2_2:-36321680 Msa0249550:CDS
AATCTATCTCACAAAACTGC+TGG 0.446010 2_2:-36321992 Msa0249550:CDS
GTGGAGTGTTTCAGTCAATT+GGG 0.451035 2_2:-36322648 Msa0249550:CDS
AGATAAGAGAGAAGCTTTCA+GGG 0.451142 2_2:-36321520 Msa0249550:CDS
GGTTGGGAATATCATTGGTT+CGG 0.456341 2_2:-36322539 Msa0249550:CDS
GTTGTGAATCCGGTGGATAT+GGG 0.458906 2_2:-36322418 Msa0249550:CDS
GTCGGTGTTCAGATTGTTTG+TGG 0.462172 2_2:-36322667 Msa0249550:CDS
GATATGGGGTTTGCGAGTCC+TGG 0.465019 2_2:-36322403 Msa0249550:CDS
AACCGGGTTGTGTTCAGATC+GGG 0.473949 2_2:+36323325 None:intergenic
TGGAATTCGCATACCTCGGT+TGG 0.474948 2_2:-36322556 Msa0249550:CDS
ATGCTTCCTTTCATGCATCT+AGG 0.475318 2_2:-36322975 Msa0249550:CDS
CACAGATTTGATTATAGTCT+AGG 0.479247 2_2:-36321473 Msa0249550:three_prime_UTR
GGCTGCCGATCTCGGTACGC+AGG 0.479417 2_2:-36321735 Msa0249550:CDS
TGGAGCTAGGCTCAAACTCT+TGG 0.480620 2_2:+36323086 None:intergenic
CTTTAGTGGTGGGAATTCTC+GGG 0.483451 2_2:-36321711 Msa0249550:CDS
ATTGGCTTGGGGAATCAAAG+AGG 0.486300 2_2:-36322597 Msa0249550:CDS
ACTGCTGTGGCTGCCGATCT+CGG 0.489455 2_2:-36321743 Msa0249550:CDS
TGAATCCTGATGAGTAAGAA+TGG 0.492797 2_2:-36323118 Msa0249550:exon
CACCAAATCTTAAATGGTGA+TGG 0.493676 2_2:+36323241 None:intergenic
TGGTGGGAATTCTCGGGCAC+TGG 0.495438 2_2:-36321705 Msa0249550:CDS
AAGGCGGCCAACCCGAATCA+AGG 0.499130 2_2:+36322896 None:intergenic
TTTCTTGTGTTTGGGATGGT+GGG 0.499647 2_2:-36322757 Msa0249550:CDS
GAAATTGGTGAGAGCAAGAG+AGG 0.501444 2_2:+36323263 None:intergenic
AAACCTTTGCGTGGAAAACC+GGG 0.501724 2_2:+36323309 None:intergenic
AATCATATCAGAAATGAAAC+CGG 0.508019 2_2:+36321919 None:intergenic
TCAACAATATTTGATATTGG+AGG 0.508821 2_2:-36321962 Msa0249550:CDS
GGTACGCAGGGCTTTAGTGG+TGG 0.512487 2_2:-36321722 Msa0249550:CDS
ACTGCAATCATTGATGGTAC+TGG 0.512877 2_2:-36321674 Msa0249550:CDS
TATTCTTGATTCAAGTTGCA+AGG 0.512896 2_2:-36321547 Msa0249550:CDS
AAAGCCCTGCGTACCGAGAT+CGG 0.516139 2_2:+36321730 None:intergenic
GTTGTTTCTTGTGTTTGGGA+TGG 0.516674 2_2:-36322761 Msa0249550:CDS
GCACGATACAAAAGCAGAGC+TGG 0.518122 2_2:+36321851 None:intergenic
GAATCAAGGGTTGAATTGGT+TGG 0.521050 2_2:+36322910 None:intergenic
AAATACACTGTTCCATCCCC+TGG 0.521294 2_2:+36321604 None:intergenic
GTGTTTGGGATGGTGGGCAG+CGG 0.524244 2_2:-36322751 Msa0249550:CDS
ACATATTTGGTGGAATAGTA+GGG 0.524391 2_2:+36323023 None:intergenic
GTTGAATTGGTTGGAACTGT+GGG 0.528850 2_2:+36322919 None:intergenic
GGAATTCGCATACCTCGGTT+GGG 0.531280 2_2:-36322555 Msa0249550:CDS
GAATCGATAGAAACAAGAAC+AGG 0.531762 2_2:+36321873 None:intergenic
CAAAGAGGGGATTGATAATG+GGG 0.532878 2_2:-36322582 Msa0249550:CDS
GTACGCAGGGCTTTAGTGGT+GGG 0.535609 2_2:-36321721 Msa0249550:CDS
ACTCGGGGAACTCACCGGCT+TGG 0.537297 2_2:-36322865 Msa0249550:CDS
TTAGAGGCGTGGAAAATACC+TGG 0.539044 2_2:-36322256 Msa0249550:CDS
ATCTATCTCACAAAACTGCT+GGG 0.540237 2_2:-36321991 Msa0249550:CDS
ATTCAACCCTTGATTCGGGT+TGG 0.543048 2_2:-36322903 Msa0249550:CDS
GTTATGTTTCAACCAGGGGA+TGG 0.543951 2_2:-36321616 Msa0249550:CDS
AGTTGTTGGGAATTGGCTTG+GGG 0.544754 2_2:-36322608 Msa0249550:CDS
GAAACATAACCTGCTAAAAG+TGG 0.547419 2_2:+36321629 None:intergenic
AGAGATTCAGAGCTGGAGCT+AGG 0.548429 2_2:+36323073 None:intergenic
TAATAAGAACACATATTTGG+TGG 0.548927 2_2:+36323013 None:intergenic
GGGGTTTGCGAGTCCTGGAA+TGG 0.552952 2_2:-36322398 Msa0249550:CDS
GCTGCCGATCTCGGTACGCA+GGG 0.553404 2_2:-36321734 Msa0249550:CDS
AAACCGGGTTGTGTTCAGAT+CGG 0.553649 2_2:+36323324 None:intergenic
CGAGATCAACCTCGCCAAGC+CGG 0.554092 2_2:+36322851 None:intergenic
AAAGCAAACGGAGCGACTCC+AGG 0.556148 2_2:+36322238 None:intergenic
GGTTGAATTGGTTGGAACTG+TGG 0.556170 2_2:+36322918 None:intergenic
GGGAACTCACCGGCTTGGCG+AGG 0.557718 2_2:-36322860 Msa0249550:CDS
ATGGAACTCGGGGAACTCAC+CGG 0.562728 2_2:-36322870 Msa0249550:CDS
GCAGTTGTAATTAGCGAGTA+CGG 0.564151 2_2:+36321761 None:intergenic
TAGCAGGTTATGTTTCAACC+AGG 0.566962 2_2:-36321622 Msa0249550:CDS
ATTGATGGTACTGGTTCTGT+TGG 0.568619 2_2:-36321665 Msa0249550:CDS
AGGCTTCCTAGATGCATGAA+AGG 0.573970 2_2:+36322969 None:intergenic
GCAGGTTATGTTTCAACCAG+GGG 0.574009 2_2:-36321620 Msa0249550:CDS
GGTTTGATGTTCATGTGTTG+GGG 0.575219 2_2:-36322696 Msa0249550:CDS
TTGGCTTGGGGAATCAAAGA+GGG 0.575740 2_2:-36322596 Msa0249550:CDS
ATGTATTTGGCTGGTCATGT+TGG 0.577593 2_2:-36322802 Msa0249550:CDS
TTTGGAAAGAGATTCAGAGC+TGG 0.577955 2_2:+36323066 None:intergenic
CCAACAACTGCAACAACACA+AGG 0.578535 2_2:+36322622 None:intergenic
AAATCCAGAAAGAAACATCA+AGG 0.579928 2_2:+36321796 None:intergenic
GTTCTAGGCGGAATCACCGC+CGG 0.584479 2_2:-36321938 Msa0249550:CDS
AGCAGGTTATGTTTCAACCA+GGG 0.585007 2_2:-36321621 Msa0249550:CDS
TGTTGAAAGGGACGGTGCAG+AGG 0.590416 2_2:-36322362 Msa0249550:CDS
AGCCCGATCTGAACACAACC+CGG 0.596321 2_2:-36323327 Msa0249550:five_prime_UTR
AATTGAAATGAGTGTTGAAA+GGG 0.597953 2_2:-36322374 Msa0249550:CDS
TCTGCAGAAAGTCGAATCAG+AGG 0.600067 2_2:-36322338 Msa0249550:CDS
AGGCGGCCAACCCGAATCAA+GGG 0.601656 2_2:+36322897 None:intergenic
CTCGCAAACCCCATATCCAC+CGG 0.601760 2_2:+36322409 None:intergenic
ACCAGCCAAATACATGCCAA+TGG 0.609265 2_2:+36322810 None:intergenic
CTCGCTAATTACAACTGCTG+TGG 0.611850 2_2:-36321756 Msa0249550:CDS
TTGTGAATCCGGTGGATATG+GGG 0.613842 2_2:-36322417 Msa0249550:CDS
TTGGTGATAGGATTGATTTG+AGG 0.616292 2_2:-36322783 Msa0249550:CDS
CCTGTGTGCCTTATGTAGAA+GGG 0.616762 2_2:+36322166 None:intergenic
CCCTTCTACATAAGGCACAC+AGG 0.627165 2_2:-36322166 Msa0249550:intron
AAATTGAAATGAGTGTTGAA+AGG 0.632392 2_2:-36322375 Msa0249550:CDS
GATATGGAATTCGCATACCT+CGG 0.635544 2_2:-36322560 Msa0249550:CDS
CCCCGAGTTCCATTAAAAGG+CGG 0.642431 2_2:+36322880 None:intergenic
GAGTGTTTCAGTCAATTGGG+TGG 0.653771 2_2:-36322645 Msa0249550:CDS
GTTTCTTGTTGTGAATCCGG+TGG 0.666770 2_2:-36322425 Msa0249550:CDS
ACCAATGATATTCCCAACCG+AGG 0.672100 2_2:+36322543 None:intergenic
TGGCTTGGGGAATCAAAGAG+GGG 0.677167 2_2:-36322595 Msa0249550:CDS
CATATCAGAAATGAAACCGG+CGG 0.690344 2_2:+36321922 None:intergenic
GATATTGGAGGAGTTCTAGG+CGG 0.700532 2_2:-36321950 Msa0249550:CDS
GAAATGAGTGTTGAAAGGGA+CGG 0.799585 2_2:-36322370 Msa0249550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAGATTCTAATATTAATTT+AGG - chr2_2:36321456-36321475 Msa0249550:three_prime_UTR 15.0%
!! TATGTAAACTAAATAAGATA+TGG + chr2_2:36322535-36322554 None:intergenic 15.0%
!! AGAGATTCTAATATTAATTT+AGG - chr2_2:36321456-36321475 Msa0249550:three_prime_UTR 15.0%
!! TATGTAAACTAAATAAGATA+TGG + chr2_2:36322535-36322554 None:intergenic 15.0%
!! TGATAATAAGAACACATATT+TGG + chr2_2:36321610-36321629 None:intergenic 20.0%
!!! GTTTTTTTACGATACTTTTT+GGG - chr2_2:36321888-36321907 Msa0249550:CDS 20.0%
!! CTTTCAACAATATTTGATAT+TGG - chr2_2:36322652-36322671 Msa0249550:CDS 20.0%
!!! GTTATTGATGAAGAAATTTT+TGG - chr2_2:36323214-36323233 Msa0249550:five_prime_UTR 20.0%
!!! ACTGTAGACATTTTTATTAA+AGG + chr2_2:36323295-36323314 None:intergenic 20.0%
!! TGATAATAAGAACACATATT+TGG + chr2_2:36321610-36321629 None:intergenic 20.0%
!!! GTTTTTTTACGATACTTTTT+GGG - chr2_2:36321888-36321907 Msa0249550:CDS 20.0%
!! CTTTCAACAATATTTGATAT+TGG - chr2_2:36322652-36322671 Msa0249550:CDS 20.0%
!!! GTTATTGATGAAGAAATTTT+TGG - chr2_2:36323214-36323233 Msa0249550:five_prime_UTR 20.0%
!!! ACTGTAGACATTTTTATTAA+AGG + chr2_2:36323295-36323314 None:intergenic 20.0%
! AAAAAAAAAAAACCTTTGCG+TGG + chr2_2:36321320-36321339 None:intergenic 25.0%
! TAATAAGAACACATATTTGG+TGG + chr2_2:36321607-36321626 None:intergenic 25.0%
!! AGAACACTTTTAACAATACT+AGG + chr2_2:36321674-36321693 None:intergenic 25.0%
!!! TAGTATTGTTAAAAGTGTTC+TGG - chr2_2:36321673-36321692 Msa0249550:CDS 25.0%
!!! AGTATTGTTAAAAGTGTTCT+GGG - chr2_2:36321674-36321693 Msa0249550:CDS 25.0%
!!! GGTTTTTTTACGATACTTTT+TGG - chr2_2:36321887-36321906 Msa0249550:CDS 25.0%
!!! GAATTTTGATCATTTTCGTT+GGG - chr2_2:36322155-36322174 Msa0249550:intron 25.0%
!!! AATTTTGATCATTTTCGTTG+GGG - chr2_2:36322156-36322175 Msa0249550:intron 25.0%
!!! AAATTGAAATGAGTGTTGAA+AGG - chr2_2:36322242-36322261 Msa0249550:CDS 25.0%
!!! AATTGAAATGAGTGTTGAAA+GGG - chr2_2:36322243-36322262 Msa0249550:CDS 25.0%
! AAAAAGAGACAAAAAGCAAA+CGG + chr2_2:36322394-36322413 None:intergenic 25.0%
!!! TTGAATTCGTTATTTTGTGT+TGG - chr2_2:36322582-36322601 Msa0249550:CDS 25.0%
! TCAACAATATTTGATATTGG+AGG - chr2_2:36322655-36322674 Msa0249550:CDS 25.0%
! AATCATATCAGAAATGAAAC+CGG + chr2_2:36322701-36322720 None:intergenic 25.0%
! AAAAAAAAAAAACCTTTGCG+TGG + chr2_2:36321320-36321339 None:intergenic 25.0%
! TAATAAGAACACATATTTGG+TGG + chr2_2:36321607-36321626 None:intergenic 25.0%
!! AGAACACTTTTAACAATACT+AGG + chr2_2:36321674-36321693 None:intergenic 25.0%
!!! TAGTATTGTTAAAAGTGTTC+TGG - chr2_2:36321673-36321692 Msa0249550:CDS 25.0%
!!! AGTATTGTTAAAAGTGTTCT+GGG - chr2_2:36321674-36321693 Msa0249550:CDS 25.0%
!!! GGTTTTTTTACGATACTTTT+TGG - chr2_2:36321887-36321906 Msa0249550:CDS 25.0%
!!! GAATTTTGATCATTTTCGTT+GGG - chr2_2:36322155-36322174 Msa0249550:intron 25.0%
!!! AATTTTGATCATTTTCGTTG+GGG - chr2_2:36322156-36322175 Msa0249550:intron 25.0%
!!! AAATTGAAATGAGTGTTGAA+AGG - chr2_2:36322242-36322261 Msa0249550:CDS 25.0%
!!! AATTGAAATGAGTGTTGAAA+GGG - chr2_2:36322243-36322262 Msa0249550:CDS 25.0%
! AAAAAGAGACAAAAAGCAAA+CGG + chr2_2:36322394-36322413 None:intergenic 25.0%
!!! TTGAATTCGTTATTTTGTGT+TGG - chr2_2:36322582-36322601 Msa0249550:CDS 25.0%
! TCAACAATATTTGATATTGG+AGG - chr2_2:36322655-36322674 Msa0249550:CDS 25.0%
! AATCATATCAGAAATGAAAC+CGG + chr2_2:36322701-36322720 None:intergenic 25.0%
!! TCTTAAATGGTGATGGAAAT+TGG + chr2_2:36321372-36321391 None:intergenic 30.0%
! TTCCATCACCATTTAAGATT+TGG - chr2_2:36321374-36321393 Msa0249550:three_prime_UTR 30.0%
! CGTGTTTTCATCTTCAATTT+TGG - chr2_2:36321416-36321435 Msa0249550:three_prime_UTR 30.0%
! ACATATTTGGTGGAATAGTA+GGG + chr2_2:36321597-36321616 None:intergenic 30.0%
! ACACTTTTAACAATACTAGG+AGG + chr2_2:36321671-36321690 None:intergenic 30.0%
TTTCTTACTTCTTACTCCAT+TGG - chr2_2:36321791-36321810 Msa0249550:CDS 30.0%
!!! TTTACGATACTTTTTGGGTT+AGG - chr2_2:36321893-36321912 Msa0249550:CDS 30.0%
ACGAAAATGATCAAAATTCC+AGG + chr2_2:36322154-36322173 None:intergenic 30.0%
!! GGAATTTTGATCATTTTCGT+TGG - chr2_2:36322154-36322173 Msa0249550:intron 30.0%
! GAATTTGAAATCGAACTATC+AGG + chr2_2:36322322-36322341 None:intergenic 30.0%
TTGCTTACACTTTCTTGTAT+TGG - chr2_2:36322425-36322444 Msa0249550:CDS 30.0%
AAATCCAGAAAGAAACATCA+AGG + chr2_2:36322824-36322843 None:intergenic 30.0%
! GATGTTTCTTTCTGGATTTT+TGG - chr2_2:36322825-36322844 Msa0249550:CDS 30.0%
! GTTTCATCTATTTTCTTTGC+TGG - chr2_2:36323045-36323064 Msa0249550:CDS 30.0%
!! TATTCTTGATTCAAGTTGCA+AGG - chr2_2:36323070-36323089 Msa0249550:CDS 30.0%
CACAGATTTGATTATAGTCT+AGG - chr2_2:36323144-36323163 Msa0249550:five_prime_UTR 30.0%
AATTCAAAAACGTCGTTTGT+TGG + chr2_2:36321263-36321282 None:intergenic 30.0%
!! TCTTAAATGGTGATGGAAAT+TGG + chr2_2:36321372-36321391 None:intergenic 30.0%
! TTCCATCACCATTTAAGATT+TGG - chr2_2:36321374-36321393 Msa0249550:three_prime_UTR 30.0%
! CGTGTTTTCATCTTCAATTT+TGG - chr2_2:36321416-36321435 Msa0249550:three_prime_UTR 30.0%
! ACATATTTGGTGGAATAGTA+GGG + chr2_2:36321597-36321616 None:intergenic 30.0%
! ACACTTTTAACAATACTAGG+AGG + chr2_2:36321671-36321690 None:intergenic 30.0%
TTTCTTACTTCTTACTCCAT+TGG - chr2_2:36321791-36321810 Msa0249550:CDS 30.0%
!!! TTTACGATACTTTTTGGGTT+AGG - chr2_2:36321893-36321912 Msa0249550:CDS 30.0%
ACGAAAATGATCAAAATTCC+AGG + chr2_2:36322154-36322173 None:intergenic 30.0%
!! GGAATTTTGATCATTTTCGT+TGG - chr2_2:36322154-36322173 Msa0249550:intron 30.0%
! GAATTTGAAATCGAACTATC+AGG + chr2_2:36322322-36322341 None:intergenic 30.0%
TTGCTTACACTTTCTTGTAT+TGG - chr2_2:36322425-36322444 Msa0249550:CDS 30.0%
AAATCCAGAAAGAAACATCA+AGG + chr2_2:36322824-36322843 None:intergenic 30.0%
! GATGTTTCTTTCTGGATTTT+TGG - chr2_2:36322825-36322844 Msa0249550:CDS 30.0%
! GTTTCATCTATTTTCTTTGC+TGG - chr2_2:36323045-36323064 Msa0249550:CDS 30.0%
!! TATTCTTGATTCAAGTTGCA+AGG - chr2_2:36323070-36323089 Msa0249550:CDS 30.0%
CACAGATTTGATTATAGTCT+AGG - chr2_2:36323144-36323163 Msa0249550:five_prime_UTR 30.0%
CACCAAATCTTAAATGGTGA+TGG + chr2_2:36321379-36321398 None:intergenic 35.0%
TGTTGGCACCAAATCTTAAA+TGG + chr2_2:36321385-36321404 None:intergenic 35.0%
AACACGACTTACAAGATTGT+TGG + chr2_2:36321402-36321421 None:intergenic 35.0%
TGAATCCTGATGAGTAAGAA+TGG - chr2_2:36321499-36321518 Msa0249550:exon 35.0%
TGATTCCATTCTTACTCATC+AGG + chr2_2:36321507-36321526 None:intergenic 35.0%
! CACATATTTGGTGGAATAGT+AGG + chr2_2:36321598-36321617 None:intergenic 35.0%
AACCAATTCAACCCTTGATT+CGG - chr2_2:36321709-36321728 Msa0249550:CDS 35.0%
TTACTCCATTGGCATGTATT+TGG - chr2_2:36321802-36321821 Msa0249550:CDS 35.0%
!! TTGGTGATAGGATTGATTTG+AGG - chr2_2:36321834-36321853 Msa0249550:CDS 35.0%
!! TTGAGGTTGTTTCTTGTGTT+TGG - chr2_2:36321851-36321870 Msa0249550:CDS 35.0%
!! TGAGGTTGTTTCTTGTGTTT+GGG - chr2_2:36321852-36321871 Msa0249550:CDS 35.0%
!!! TACTTTTTGGGTTAGGATAC+TGG - chr2_2:36321900-36321919 Msa0249550:CDS 35.0%
TGGTTTGATGTTCATGTGTT+GGG - chr2_2:36321920-36321939 Msa0249550:CDS 35.0%
ATCAAAGAGGGGATTGATAA+TGG - chr2_2:36322033-36322052 Msa0249550:intron 35.0%
! TCAAAGAGGGGATTGATAAT+GGG - chr2_2:36322034-36322053 Msa0249550:intron 35.0%
! TCTGTTTCTTGTTGTGAATC+CGG - chr2_2:36322189-36322208 Msa0249550:CDS 35.0%
CTCATTTCAATTTCCATTCC+AGG + chr2_2:36322235-36322254 None:intergenic 35.0%
TCAAATTCTTCGTCTGCTAT+TGG - chr2_2:36322334-36322353 Msa0249550:CDS 35.0%
!! GTCTGCTATTGGATTTTTAG+AGG - chr2_2:36322345-36322364 Msa0249550:CDS 35.0%
ATTGGTTACCCTTCTACATA+AGG - chr2_2:36322443-36322462 Msa0249550:CDS 35.0%
!!! TTATTTTGTGTTGGTTGCAG+CGG - chr2_2:36322591-36322610 Msa0249550:CDS 35.0%
AATCTATCTCACAAAACTGC+TGG - chr2_2:36322625-36322644 Msa0249550:CDS 35.0%
ATCTATCTCACAAAACTGCT+GGG - chr2_2:36322626-36322645 Msa0249550:CDS 35.0%
TTTGATATTGGAGGAGTTCT+AGG - chr2_2:36322664-36322683 Msa0249550:CDS 35.0%
GAATCGATAGAAACAAGAAC+AGG + chr2_2:36322747-36322766 None:intergenic 35.0%
ATCACCTTGATGTTTCTTTC+TGG - chr2_2:36322817-36322836 Msa0249550:CDS 35.0%
!!! CTTTCTGGATTTTTGGTGAA+TGG - chr2_2:36322832-36322851 Msa0249550:CDS 35.0%
ACTGTTACTGCAATCATTGA+TGG - chr2_2:36322937-36322956 Msa0249550:CDS 35.0%
GAAACATAACCTGCTAAAAG+TGG + chr2_2:36322991-36323010 None:intergenic 35.0%
AGATAAGAGAGAAGCTTTCA+GGG - chr2_2:36323097-36323116 Msa0249550:CDS 35.0%
CACCAAATCTTAAATGGTGA+TGG + chr2_2:36321379-36321398 None:intergenic 35.0%
TGTTGGCACCAAATCTTAAA+TGG + chr2_2:36321385-36321404 None:intergenic 35.0%
AACACGACTTACAAGATTGT+TGG + chr2_2:36321402-36321421 None:intergenic 35.0%
TGAATCCTGATGAGTAAGAA+TGG - chr2_2:36321499-36321518 Msa0249550:exon 35.0%
TGATTCCATTCTTACTCATC+AGG + chr2_2:36321507-36321526 None:intergenic 35.0%
! CACATATTTGGTGGAATAGT+AGG + chr2_2:36321598-36321617 None:intergenic 35.0%
AACCAATTCAACCCTTGATT+CGG - chr2_2:36321709-36321728 Msa0249550:CDS 35.0%
TTACTCCATTGGCATGTATT+TGG - chr2_2:36321802-36321821 Msa0249550:CDS 35.0%
!! TTGGTGATAGGATTGATTTG+AGG - chr2_2:36321834-36321853 Msa0249550:CDS 35.0%
!! TTGAGGTTGTTTCTTGTGTT+TGG - chr2_2:36321851-36321870 Msa0249550:CDS 35.0%
!! TGAGGTTGTTTCTTGTGTTT+GGG - chr2_2:36321852-36321871 Msa0249550:CDS 35.0%
!!! TACTTTTTGGGTTAGGATAC+TGG - chr2_2:36321900-36321919 Msa0249550:CDS 35.0%
TGGTTTGATGTTCATGTGTT+GGG - chr2_2:36321920-36321939 Msa0249550:CDS 35.0%
ATCAAAGAGGGGATTGATAA+TGG - chr2_2:36322033-36322052 Msa0249550:intron 35.0%
! TCAAAGAGGGGATTGATAAT+GGG - chr2_2:36322034-36322053 Msa0249550:intron 35.0%
! TCTGTTTCTTGTTGTGAATC+CGG - chr2_2:36322189-36322208 Msa0249550:CDS 35.0%
CTCATTTCAATTTCCATTCC+AGG + chr2_2:36322235-36322254 None:intergenic 35.0%
TCAAATTCTTCGTCTGCTAT+TGG - chr2_2:36322334-36322353 Msa0249550:CDS 35.0%
!! GTCTGCTATTGGATTTTTAG+AGG - chr2_2:36322345-36322364 Msa0249550:CDS 35.0%
ATTGGTTACCCTTCTACATA+AGG - chr2_2:36322443-36322462 Msa0249550:CDS 35.0%
!!! TTATTTTGTGTTGGTTGCAG+CGG - chr2_2:36322591-36322610 Msa0249550:CDS 35.0%
AATCTATCTCACAAAACTGC+TGG - chr2_2:36322625-36322644 Msa0249550:CDS 35.0%
ATCTATCTCACAAAACTGCT+GGG - chr2_2:36322626-36322645 Msa0249550:CDS 35.0%
TTTGATATTGGAGGAGTTCT+AGG - chr2_2:36322664-36322683 Msa0249550:CDS 35.0%
GAATCGATAGAAACAAGAAC+AGG + chr2_2:36322747-36322766 None:intergenic 35.0%
ATCACCTTGATGTTTCTTTC+TGG - chr2_2:36322817-36322836 Msa0249550:CDS 35.0%
!!! CTTTCTGGATTTTTGGTGAA+TGG - chr2_2:36322832-36322851 Msa0249550:CDS 35.0%
ACTGTTACTGCAATCATTGA+TGG - chr2_2:36322937-36322956 Msa0249550:CDS 35.0%
GAAACATAACCTGCTAAAAG+TGG + chr2_2:36322991-36323010 None:intergenic 35.0%
AGATAAGAGAGAAGCTTTCA+GGG - chr2_2:36323097-36323116 Msa0249550:CDS 35.0%
AAAACCTTTGCGTGGAAAAC+CGG + chr2_2:36321312-36321331 None:intergenic 40.0%
TTTGGAAAGAGATTCAGAGC+TGG + chr2_2:36321554-36321573 None:intergenic 40.0%
!! AATAGTAGGGTTTTGTGAGG+GGG + chr2_2:36321584-36321603 None:intergenic 40.0%
!! GAATAGTAGGGTTTTGTGAG+GGG + chr2_2:36321585-36321604 None:intergenic 40.0%
!! GGAATAGTAGGGTTTTGTGA+GGG + chr2_2:36321586-36321605 None:intergenic 40.0%
!! TGGAATAGTAGGGTTTTGTG+AGG + chr2_2:36321587-36321606 None:intergenic 40.0%
ATGCTTCCTTTCATGCATCT+AGG - chr2_2:36321642-36321661 Msa0249550:CDS 40.0%
GTTGAATTGGTTGGAACTGT+GGG + chr2_2:36321701-36321720 None:intergenic 40.0%
GAATCAAGGGTTGAATTGGT+TGG + chr2_2:36321710-36321729 None:intergenic 40.0%
ACCAATTCAACCCTTGATTC+GGG - chr2_2:36321710-36321729 Msa0249550:CDS 40.0%
! ATGTATTTGGCTGGTCATGT+TGG - chr2_2:36321815-36321834 Msa0249550:CDS 40.0%
!! GTTGTTTCTTGTGTTTGGGA+TGG - chr2_2:36321856-36321875 Msa0249550:CDS 40.0%
! TTTCTTGTGTTTGGGATGGT+GGG - chr2_2:36321860-36321879 Msa0249550:CDS 40.0%
! CTGGTTTGATGTTCATGTGT+TGG - chr2_2:36321919-36321938 Msa0249550:CDS 40.0%
GGTTTGATGTTCATGTGTTG+GGG - chr2_2:36321921-36321940 Msa0249550:CDS 40.0%
!!! CATGTGTTGGGGTTTTTTGT+CGG - chr2_2:36321932-36321951 Msa0249550:CDS 40.0%
! TGTGGAGTGTTTCAGTCAAT+TGG - chr2_2:36321968-36321987 Msa0249550:CDS 40.0%
! GTGGAGTGTTTCAGTCAATT+GGG - chr2_2:36321969-36321988 Msa0249550:CDS 40.0%
! CTTGTGTTGTTGCAGTTGTT+GGG - chr2_2:36321996-36322015 Msa0249550:CDS 40.0%
TTGTTGCAGTTGTTGGGAAT+TGG - chr2_2:36322002-36322021 Msa0249550:CDS 40.0%
!! CAAAGAGGGGATTGATAATG+GGG - chr2_2:36322035-36322054 Msa0249550:intron 40.0%
GATATGGAATTCGCATACCT+CGG - chr2_2:36322057-36322076 Msa0249550:intron 40.0%
! GGTTGGGAATATCATTGGTT+CGG - chr2_2:36322078-36322097 Msa0249550:intron 40.0%
!! CATTGGTTCGGTTATTGCTT+CGG - chr2_2:36322090-36322109 Msa0249550:intron 40.0%
!! ATTGGTTCGGTTATTGCTTC+GGG - chr2_2:36322091-36322110 Msa0249550:intron 40.0%
!!! GGGTGTTTTGGAATTTGGAT+GGG - chr2_2:36322111-36322130 Msa0249550:intron 40.0%
!!! GGTGTTTTGGAATTTGGATG+GGG - chr2_2:36322112-36322131 Msa0249550:intron 40.0%
!!! TTTTGGAATTTGGATGGGGT+TGG - chr2_2:36322116-36322135 Msa0249550:intron 40.0%
! GATCATTTTCGTTGGGGTTT+TGG - chr2_2:36322162-36322181 Msa0249550:intron 40.0%
!! GAAATGAGTGTTGAAAGGGA+CGG - chr2_2:36322247-36322266 Msa0249550:CDS 40.0%
!! CTATTGGATTTTTAGAGGCG+TGG - chr2_2:36322350-36322369 Msa0249550:CDS 40.0%
CATATCAGAAATGAAACCGG+CGG + chr2_2:36322698-36322717 None:intergenic 40.0%
!! CTGCTTTTGTATCGTGCTTT+CGG - chr2_2:36322772-36322791 Msa0249550:CDS 40.0%
! TGCTTTTGTATCGTGCTTTC+GGG - chr2_2:36322773-36322792 Msa0249550:CDS 40.0%
GCAGTTGTAATTAGCGAGTA+CGG + chr2_2:36322859-36322878 None:intergenic 40.0%
! ACTGCAATCATTGATGGTAC+TGG - chr2_2:36322943-36322962 Msa0249550:CDS 40.0%
!! ATTGATGGTACTGGTTCTGT+TGG - chr2_2:36322952-36322971 Msa0249550:CDS 40.0%
TAGCAGGTTATGTTTCAACC+AGG - chr2_2:36322995-36323014 Msa0249550:CDS 40.0%
AGCAGGTTATGTTTCAACCA+GGG - chr2_2:36322996-36323015 Msa0249550:CDS 40.0%
GAGATAAGAGAGAAGCTTTC+AGG - chr2_2:36323096-36323115 Msa0249550:CDS 40.0%
AAAACCTTTGCGTGGAAAAC+CGG + chr2_2:36321312-36321331 None:intergenic 40.0%
TTTGGAAAGAGATTCAGAGC+TGG + chr2_2:36321554-36321573 None:intergenic 40.0%
!! AATAGTAGGGTTTTGTGAGG+GGG + chr2_2:36321584-36321603 None:intergenic 40.0%
!! GAATAGTAGGGTTTTGTGAG+GGG + chr2_2:36321585-36321604 None:intergenic 40.0%
!! GGAATAGTAGGGTTTTGTGA+GGG + chr2_2:36321586-36321605 None:intergenic 40.0%
!! TGGAATAGTAGGGTTTTGTG+AGG + chr2_2:36321587-36321606 None:intergenic 40.0%
ATGCTTCCTTTCATGCATCT+AGG - chr2_2:36321642-36321661 Msa0249550:CDS 40.0%
GTTGAATTGGTTGGAACTGT+GGG + chr2_2:36321701-36321720 None:intergenic 40.0%
GAATCAAGGGTTGAATTGGT+TGG + chr2_2:36321710-36321729 None:intergenic 40.0%
ACCAATTCAACCCTTGATTC+GGG - chr2_2:36321710-36321729 Msa0249550:CDS 40.0%
! ATGTATTTGGCTGGTCATGT+TGG - chr2_2:36321815-36321834 Msa0249550:CDS 40.0%
!! GTTGTTTCTTGTGTTTGGGA+TGG - chr2_2:36321856-36321875 Msa0249550:CDS 40.0%
! TTTCTTGTGTTTGGGATGGT+GGG - chr2_2:36321860-36321879 Msa0249550:CDS 40.0%
! CTGGTTTGATGTTCATGTGT+TGG - chr2_2:36321919-36321938 Msa0249550:CDS 40.0%
GGTTTGATGTTCATGTGTTG+GGG - chr2_2:36321921-36321940 Msa0249550:CDS 40.0%
!!! CATGTGTTGGGGTTTTTTGT+CGG - chr2_2:36321932-36321951 Msa0249550:CDS 40.0%
! TGTGGAGTGTTTCAGTCAAT+TGG - chr2_2:36321968-36321987 Msa0249550:CDS 40.0%
! GTGGAGTGTTTCAGTCAATT+GGG - chr2_2:36321969-36321988 Msa0249550:CDS 40.0%
! CTTGTGTTGTTGCAGTTGTT+GGG - chr2_2:36321996-36322015 Msa0249550:CDS 40.0%
TTGTTGCAGTTGTTGGGAAT+TGG - chr2_2:36322002-36322021 Msa0249550:CDS 40.0%
!! CAAAGAGGGGATTGATAATG+GGG - chr2_2:36322035-36322054 Msa0249550:intron 40.0%
GATATGGAATTCGCATACCT+CGG - chr2_2:36322057-36322076 Msa0249550:intron 40.0%
! GGTTGGGAATATCATTGGTT+CGG - chr2_2:36322078-36322097 Msa0249550:intron 40.0%
!! CATTGGTTCGGTTATTGCTT+CGG - chr2_2:36322090-36322109 Msa0249550:intron 40.0%
!! ATTGGTTCGGTTATTGCTTC+GGG - chr2_2:36322091-36322110 Msa0249550:intron 40.0%
!!! GGGTGTTTTGGAATTTGGAT+GGG - chr2_2:36322111-36322130 Msa0249550:intron 40.0%
!!! GGTGTTTTGGAATTTGGATG+GGG - chr2_2:36322112-36322131 Msa0249550:intron 40.0%
!!! TTTTGGAATTTGGATGGGGT+TGG - chr2_2:36322116-36322135 Msa0249550:intron 40.0%
! GATCATTTTCGTTGGGGTTT+TGG - chr2_2:36322162-36322181 Msa0249550:intron 40.0%
!! GAAATGAGTGTTGAAAGGGA+CGG - chr2_2:36322247-36322266 Msa0249550:CDS 40.0%
!! CTATTGGATTTTTAGAGGCG+TGG - chr2_2:36322350-36322369 Msa0249550:CDS 40.0%
CATATCAGAAATGAAACCGG+CGG + chr2_2:36322698-36322717 None:intergenic 40.0%
!! CTGCTTTTGTATCGTGCTTT+CGG - chr2_2:36322772-36322791 Msa0249550:CDS 40.0%
! TGCTTTTGTATCGTGCTTTC+GGG - chr2_2:36322773-36322792 Msa0249550:CDS 40.0%
GCAGTTGTAATTAGCGAGTA+CGG + chr2_2:36322859-36322878 None:intergenic 40.0%
! ACTGCAATCATTGATGGTAC+TGG - chr2_2:36322943-36322962 Msa0249550:CDS 40.0%
!! ATTGATGGTACTGGTTCTGT+TGG - chr2_2:36322952-36322971 Msa0249550:CDS 40.0%
TAGCAGGTTATGTTTCAACC+AGG - chr2_2:36322995-36323014 Msa0249550:CDS 40.0%
AGCAGGTTATGTTTCAACCA+GGG - chr2_2:36322996-36323015 Msa0249550:CDS 40.0%
GAGATAAGAGAGAAGCTTTC+AGG - chr2_2:36323096-36323115 Msa0249550:CDS 40.0%
AAACCGGGTTGTGTTCAGAT+CGG + chr2_2:36321296-36321315 None:intergenic 45.0%
AAACCTTTGCGTGGAAAACC+GGG + chr2_2:36321311-36321330 None:intergenic 45.0%
GAAATTGGTGAGAGCAAGAG+AGG + chr2_2:36321357-36321376 None:intergenic 45.0%
AGGCTTCCTAGATGCATGAA+AGG + chr2_2:36321651-36321670 None:intergenic 45.0%
GGTTGAATTGGTTGGAACTG+TGG + chr2_2:36321702-36321721 None:intergenic 45.0%
ACCCGAATCAAGGGTTGAAT+TGG + chr2_2:36321714-36321733 None:intergenic 45.0%
!! ATTCAACCCTTGATTCGGGT+TGG - chr2_2:36321714-36321733 Msa0249550:CDS 45.0%
GTTCCCCGAGTTCCATTAAA+AGG + chr2_2:36321743-36321762 None:intergenic 45.0%
TCCATTGGCATGTATTTGGC+TGG - chr2_2:36321806-36321825 Msa0249550:CDS 45.0%
ACCAGCCAAATACATGCCAA+TGG + chr2_2:36321810-36321829 None:intergenic 45.0%
! GTTTCTTGTGTTTGGGATGG+TGG - chr2_2:36321859-36321878 Msa0249550:CDS 45.0%
! GTCGGTGTTCAGATTGTTTG+TGG - chr2_2:36321950-36321969 Msa0249550:CDS 45.0%
GAGTGTTTCAGTCAATTGGG+TGG - chr2_2:36321972-36321991 Msa0249550:CDS 45.0%
CCAACAACTGCAACAACACA+AGG + chr2_2:36321998-36322017 None:intergenic 45.0%
! CCTTGTGTTGTTGCAGTTGT+TGG - chr2_2:36321995-36322014 Msa0249550:CDS 45.0%
! CAGTTGTTGGGAATTGGCTT+GGG - chr2_2:36322008-36322027 Msa0249550:CDS 45.0%
!! AGTTGTTGGGAATTGGCTTG+GGG - chr2_2:36322009-36322028 Msa0249550:CDS 45.0%
!! ATTGGCTTGGGGAATCAAAG+AGG - chr2_2:36322020-36322039 Msa0249550:intron 45.0%
!! TTGGCTTGGGGAATCAAAGA+GGG - chr2_2:36322021-36322040 Msa0249550:intron 45.0%
!! GGGGATTGATAATGGGGATA+TGG - chr2_2:36322041-36322060 Msa0249550:intron 45.0%
ACCTCGGTTGGGAATATCAT+TGG - chr2_2:36322073-36322092 Msa0249550:intron 45.0%
ACCAATGATATTCCCAACCG+AGG + chr2_2:36322077-36322096 None:intergenic 45.0%
! GGTTATTGCTTCGGGTGTTT+TGG - chr2_2:36322099-36322118 Msa0249550:intron 45.0%
!!! GCTTCGGGTGTTTTGGAATT+TGG - chr2_2:36322106-36322125 Msa0249550:intron 45.0%
!!! CGGGTGTTTTGGAATTTGGA+TGG - chr2_2:36322110-36322129 Msa0249550:intron 45.0%
! GTTTCTTGTTGTGAATCCGG+TGG - chr2_2:36322192-36322211 Msa0249550:CDS 45.0%
TGTTGTGAATCCGGTGGATA+TGG - chr2_2:36322198-36322217 Msa0249550:CDS 45.0%
GTTGTGAATCCGGTGGATAT+GGG - chr2_2:36322199-36322218 Msa0249550:CDS 45.0%
TTGTGAATCCGGTGGATATG+GGG - chr2_2:36322200-36322219 Msa0249550:CDS 45.0%
TCTGCAGAAAGTCGAATCAG+AGG - chr2_2:36322279-36322298 Msa0249550:CDS 45.0%
! TTAGAGGCGTGGAAAATACC+TGG - chr2_2:36322361-36322380 Msa0249550:CDS 45.0%
CCTGTGTGCCTTATGTAGAA+GGG + chr2_2:36322454-36322473 None:intergenic 45.0%
ACCTGTGTGCCTTATGTAGA+AGG + chr2_2:36322455-36322474 None:intergenic 45.0%
!! GATATTGGAGGAGTTCTAGG+CGG - chr2_2:36322667-36322686 Msa0249550:CDS 45.0%
CTCGCTAATTACAACTGCTG+TGG - chr2_2:36322861-36322880 Msa0249550:CDS 45.0%
! GCTTTAGTGGTGGGAATTCT+CGG - chr2_2:36322905-36322924 Msa0249550:CDS 45.0%
! CTTTAGTGGTGGGAATTCTC+GGG - chr2_2:36322906-36322925 Msa0249550:CDS 45.0%
GCAGGTTATGTTTCAACCAG+GGG - chr2_2:36322997-36323016 Msa0249550:CDS 45.0%
GTTATGTTTCAACCAGGGGA+TGG - chr2_2:36323001-36323020 Msa0249550:CDS 45.0%
AAATACACTGTTCCATCCCC+TGG + chr2_2:36323016-36323035 None:intergenic 45.0%
AAACCGGGTTGTGTTCAGAT+CGG + chr2_2:36321296-36321315 None:intergenic 45.0%
AAACCTTTGCGTGGAAAACC+GGG + chr2_2:36321311-36321330 None:intergenic 45.0%
GAAATTGGTGAGAGCAAGAG+AGG + chr2_2:36321357-36321376 None:intergenic 45.0%
AGGCTTCCTAGATGCATGAA+AGG + chr2_2:36321651-36321670 None:intergenic 45.0%
GGTTGAATTGGTTGGAACTG+TGG + chr2_2:36321702-36321721 None:intergenic 45.0%
ACCCGAATCAAGGGTTGAAT+TGG + chr2_2:36321714-36321733 None:intergenic 45.0%
!! ATTCAACCCTTGATTCGGGT+TGG - chr2_2:36321714-36321733 Msa0249550:CDS 45.0%
GTTCCCCGAGTTCCATTAAA+AGG + chr2_2:36321743-36321762 None:intergenic 45.0%
TCCATTGGCATGTATTTGGC+TGG - chr2_2:36321806-36321825 Msa0249550:CDS 45.0%
ACCAGCCAAATACATGCCAA+TGG + chr2_2:36321810-36321829 None:intergenic 45.0%
! GTTTCTTGTGTTTGGGATGG+TGG - chr2_2:36321859-36321878 Msa0249550:CDS 45.0%
! GTCGGTGTTCAGATTGTTTG+TGG - chr2_2:36321950-36321969 Msa0249550:CDS 45.0%
GAGTGTTTCAGTCAATTGGG+TGG - chr2_2:36321972-36321991 Msa0249550:CDS 45.0%
CCAACAACTGCAACAACACA+AGG + chr2_2:36321998-36322017 None:intergenic 45.0%
! CCTTGTGTTGTTGCAGTTGT+TGG - chr2_2:36321995-36322014 Msa0249550:CDS 45.0%
! CAGTTGTTGGGAATTGGCTT+GGG - chr2_2:36322008-36322027 Msa0249550:CDS 45.0%
!! AGTTGTTGGGAATTGGCTTG+GGG - chr2_2:36322009-36322028 Msa0249550:CDS 45.0%
!! ATTGGCTTGGGGAATCAAAG+AGG - chr2_2:36322020-36322039 Msa0249550:intron 45.0%
!! TTGGCTTGGGGAATCAAAGA+GGG - chr2_2:36322021-36322040 Msa0249550:intron 45.0%
!! GGGGATTGATAATGGGGATA+TGG - chr2_2:36322041-36322060 Msa0249550:intron 45.0%
ACCTCGGTTGGGAATATCAT+TGG - chr2_2:36322073-36322092 Msa0249550:intron 45.0%
ACCAATGATATTCCCAACCG+AGG + chr2_2:36322077-36322096 None:intergenic 45.0%
! GGTTATTGCTTCGGGTGTTT+TGG - chr2_2:36322099-36322118 Msa0249550:intron 45.0%
!!! GCTTCGGGTGTTTTGGAATT+TGG - chr2_2:36322106-36322125 Msa0249550:intron 45.0%
!!! CGGGTGTTTTGGAATTTGGA+TGG - chr2_2:36322110-36322129 Msa0249550:intron 45.0%
! GTTTCTTGTTGTGAATCCGG+TGG - chr2_2:36322192-36322211 Msa0249550:CDS 45.0%
TGTTGTGAATCCGGTGGATA+TGG - chr2_2:36322198-36322217 Msa0249550:CDS 45.0%
GTTGTGAATCCGGTGGATAT+GGG - chr2_2:36322199-36322218 Msa0249550:CDS 45.0%
TTGTGAATCCGGTGGATATG+GGG - chr2_2:36322200-36322219 Msa0249550:CDS 45.0%
TCTGCAGAAAGTCGAATCAG+AGG - chr2_2:36322279-36322298 Msa0249550:CDS 45.0%
! TTAGAGGCGTGGAAAATACC+TGG - chr2_2:36322361-36322380 Msa0249550:CDS 45.0%
CCTGTGTGCCTTATGTAGAA+GGG + chr2_2:36322454-36322473 None:intergenic 45.0%
ACCTGTGTGCCTTATGTAGA+AGG + chr2_2:36322455-36322474 None:intergenic 45.0%
!! GATATTGGAGGAGTTCTAGG+CGG - chr2_2:36322667-36322686 Msa0249550:CDS 45.0%
CTCGCTAATTACAACTGCTG+TGG - chr2_2:36322861-36322880 Msa0249550:CDS 45.0%
! GCTTTAGTGGTGGGAATTCT+CGG - chr2_2:36322905-36322924 Msa0249550:CDS 45.0%
! CTTTAGTGGTGGGAATTCTC+GGG - chr2_2:36322906-36322925 Msa0249550:CDS 45.0%
GCAGGTTATGTTTCAACCAG+GGG - chr2_2:36322997-36323016 Msa0249550:CDS 45.0%
GTTATGTTTCAACCAGGGGA+TGG - chr2_2:36323001-36323020 Msa0249550:CDS 45.0%
AAATACACTGTTCCATCCCC+TGG + chr2_2:36323016-36323035 None:intergenic 45.0%
AACCGGGTTGTGTTCAGATC+GGG + chr2_2:36321295-36321314 None:intergenic 50.0%
TGGAGCTAGGCTCAAACTCT+TGG + chr2_2:36321534-36321553 None:intergenic 50.0%
AGAGATTCAGAGCTGGAGCT+AGG + chr2_2:36321547-36321566 None:intergenic 50.0%
!! TTGTGAGGGGGTTTCAGGTT+TGG + chr2_2:36321572-36321591 None:intergenic 50.0%
! GGCCGCCTTTTAATGGAACT+CGG - chr2_2:36321735-36321754 Msa0249550:CDS 50.0%
! GCCGCCTTTTAATGGAACTC+GGG - chr2_2:36321736-36321755 Msa0249550:CDS 50.0%
CCCCGAGTTCCATTAAAAGG+CGG + chr2_2:36321740-36321759 None:intergenic 50.0%
! CCGCCTTTTAATGGAACTCG+GGG - chr2_2:36321737-36321756 Msa0249550:CDS 50.0%
!! TGGCTGGTCATGTTGGTGAT+AGG - chr2_2:36321822-36321841 Msa0249550:CDS 50.0%
GCAGTTGTTGGGAATTGGCT+TGG - chr2_2:36322007-36322026 Msa0249550:CDS 50.0%
! TGGCTTGGGGAATCAAAGAG+GGG - chr2_2:36322022-36322041 Msa0249550:intron 50.0%
TGGAATTCGCATACCTCGGT+TGG - chr2_2:36322061-36322080 Msa0249550:intron 50.0%
GGAATTCGCATACCTCGGTT+GGG - chr2_2:36322062-36322081 Msa0249550:intron 50.0%
CCCTTCTACATAAGGCACAC+AGG - chr2_2:36322451-36322470 Msa0249550:CDS 50.0%
GCACGATACAAAAGCAGAGC+TGG + chr2_2:36322769-36322788 None:intergenic 50.0%
!! GCTCTTGGACCACTTTTAGC+AGG - chr2_2:36322979-36322998 Msa0249550:CDS 50.0%
AACCGGGTTGTGTTCAGATC+GGG + chr2_2:36321295-36321314 None:intergenic 50.0%
TGGAGCTAGGCTCAAACTCT+TGG + chr2_2:36321534-36321553 None:intergenic 50.0%
AGAGATTCAGAGCTGGAGCT+AGG + chr2_2:36321547-36321566 None:intergenic 50.0%
!! TTGTGAGGGGGTTTCAGGTT+TGG + chr2_2:36321572-36321591 None:intergenic 50.0%
! GGCCGCCTTTTAATGGAACT+CGG - chr2_2:36321735-36321754 Msa0249550:CDS 50.0%
! GCCGCCTTTTAATGGAACTC+GGG - chr2_2:36321736-36321755 Msa0249550:CDS 50.0%
CCCCGAGTTCCATTAAAAGG+CGG + chr2_2:36321740-36321759 None:intergenic 50.0%
! CCGCCTTTTAATGGAACTCG+GGG - chr2_2:36321737-36321756 Msa0249550:CDS 50.0%
!! TGGCTGGTCATGTTGGTGAT+AGG - chr2_2:36321822-36321841 Msa0249550:CDS 50.0%
GCAGTTGTTGGGAATTGGCT+TGG - chr2_2:36322007-36322026 Msa0249550:CDS 50.0%
! TGGCTTGGGGAATCAAAGAG+GGG - chr2_2:36322022-36322041 Msa0249550:intron 50.0%
TGGAATTCGCATACCTCGGT+TGG - chr2_2:36322061-36322080 Msa0249550:intron 50.0%
GGAATTCGCATACCTCGGTT+GGG - chr2_2:36322062-36322081 Msa0249550:intron 50.0%
CCCTTCTACATAAGGCACAC+AGG - chr2_2:36322451-36322470 Msa0249550:CDS 50.0%
GCACGATACAAAAGCAGAGC+TGG + chr2_2:36322769-36322788 None:intergenic 50.0%
!! GCTCTTGGACCACTTTTAGC+AGG - chr2_2:36322979-36322998 Msa0249550:CDS 50.0%
AGCCCGATCTGAACACAACC+CGG - chr2_2:36321290-36321309 Msa0249550:three_prime_UTR 55.0%
! CAACCCGGTTTTCCACGCAA+AGG - chr2_2:36321305-36321324 Msa0249550:three_prime_UTR 55.0%
!! GGGTTTTGTGAGGGGGTTTC+AGG + chr2_2:36321577-36321596 None:intergenic 55.0%
!!! TCGGGTTGGCCGCCTTTTAA+TGG - chr2_2:36321728-36321747 Msa0249550:CDS 55.0%
ATGGAACTCGGGGAACTCAC+CGG - chr2_2:36321747-36321766 Msa0249550:CDS 55.0%
!! TGGATGGGGTTGGTCGTTTG+TGG - chr2_2:36322126-36322145 Msa0249550:intron 55.0%
CTCGCAAACCCCATATCCAC+CGG + chr2_2:36322211-36322230 None:intergenic 55.0%
GATATGGGGTTTGCGAGTCC+TGG - chr2_2:36322214-36322233 Msa0249550:CDS 55.0%
TGTTGAAAGGGACGGTGCAG+AGG - chr2_2:36322255-36322274 Msa0249550:CDS 55.0%
AAAGCAAACGGAGCGACTCC+AGG + chr2_2:36322382-36322401 None:intergenic 55.0%
AAAGCCCTGCGTACCGAGAT+CGG + chr2_2:36322890-36322909 None:intergenic 55.0%
! GTACGCAGGGCTTTAGTGGT+GGG - chr2_2:36322896-36322915 Msa0249550:CDS 55.0%
GGTTCTGTTGGAGCTGCTCT+TGG - chr2_2:36322964-36322983 Msa0249550:CDS 55.0%
AGCCCGATCTGAACACAACC+CGG - chr2_2:36321290-36321309 Msa0249550:three_prime_UTR 55.0%
! CAACCCGGTTTTCCACGCAA+AGG - chr2_2:36321305-36321324 Msa0249550:three_prime_UTR 55.0%
!! GGGTTTTGTGAGGGGGTTTC+AGG + chr2_2:36321577-36321596 None:intergenic 55.0%
!!! TCGGGTTGGCCGCCTTTTAA+TGG - chr2_2:36321728-36321747 Msa0249550:CDS 55.0%
ATGGAACTCGGGGAACTCAC+CGG - chr2_2:36321747-36321766 Msa0249550:CDS 55.0%
!! TGGATGGGGTTGGTCGTTTG+TGG - chr2_2:36322126-36322145 Msa0249550:intron 55.0%
CTCGCAAACCCCATATCCAC+CGG + chr2_2:36322211-36322230 None:intergenic 55.0%
GATATGGGGTTTGCGAGTCC+TGG - chr2_2:36322214-36322233 Msa0249550:CDS 55.0%
TGTTGAAAGGGACGGTGCAG+AGG - chr2_2:36322255-36322274 Msa0249550:CDS 55.0%
AAAGCAAACGGAGCGACTCC+AGG + chr2_2:36322382-36322401 None:intergenic 55.0%
AAAGCCCTGCGTACCGAGAT+CGG + chr2_2:36322890-36322909 None:intergenic 55.0%
! GTACGCAGGGCTTTAGTGGT+GGG - chr2_2:36322896-36322915 Msa0249550:CDS 55.0%
GGTTCTGTTGGAGCTGCTCT+TGG - chr2_2:36322964-36322983 Msa0249550:CDS 55.0%
AGGCGGCCAACCCGAATCAA+GGG + chr2_2:36321723-36321742 None:intergenic 60.0%
AAGGCGGCCAACCCGAATCA+AGG + chr2_2:36321724-36321743 None:intergenic 60.0%
CGAGATCAACCTCGCCAAGC+CGG + chr2_2:36321769-36321788 None:intergenic 60.0%
!! GTGTTTGGGATGGTGGGCAG+CGG - chr2_2:36321866-36321885 Msa0249550:CDS 60.0%
! GGTTGGTCGTTTGTGGTGCC+TGG - chr2_2:36322133-36322152 Msa0249550:intron 60.0%
GGGGTTTGCGAGTCCTGGAA+TGG - chr2_2:36322219-36322238 Msa0249550:CDS 60.0%
!! GTGTTGGTTGCAGCGGTTGC+TGG - chr2_2:36322598-36322617 Msa0249550:CDS 60.0%
! GTTCTAGGCGGAATCACCGC+CGG - chr2_2:36322679-36322698 Msa0249550:CDS 60.0%
ACTGCTGTGGCTGCCGATCT+CGG - chr2_2:36322874-36322893 Msa0249550:CDS 60.0%
! CTCGGTACGCAGGGCTTTAG+TGG - chr2_2:36322892-36322911 Msa0249550:CDS 60.0%
! GGTACGCAGGGCTTTAGTGG+TGG - chr2_2:36322895-36322914 Msa0249550:CDS 60.0%
TGGTGGGAATTCTCGGGCAC+TGG - chr2_2:36322912-36322931 Msa0249550:CDS 60.0%
AGGCGGCCAACCCGAATCAA+GGG + chr2_2:36321723-36321742 None:intergenic 60.0%
AAGGCGGCCAACCCGAATCA+AGG + chr2_2:36321724-36321743 None:intergenic 60.0%
CGAGATCAACCTCGCCAAGC+CGG + chr2_2:36321769-36321788 None:intergenic 60.0%
!! GTGTTTGGGATGGTGGGCAG+CGG - chr2_2:36321866-36321885 Msa0249550:CDS 60.0%
! GGTTGGTCGTTTGTGGTGCC+TGG - chr2_2:36322133-36322152 Msa0249550:intron 60.0%
GGGGTTTGCGAGTCCTGGAA+TGG - chr2_2:36322219-36322238 Msa0249550:CDS 60.0%
!! GTGTTGGTTGCAGCGGTTGC+TGG - chr2_2:36322598-36322617 Msa0249550:CDS 60.0%
! GTTCTAGGCGGAATCACCGC+CGG - chr2_2:36322679-36322698 Msa0249550:CDS 60.0%
ACTGCTGTGGCTGCCGATCT+CGG - chr2_2:36322874-36322893 Msa0249550:CDS 60.0%
! CTCGGTACGCAGGGCTTTAG+TGG - chr2_2:36322892-36322911 Msa0249550:CDS 60.0%
! GGTACGCAGGGCTTTAGTGG+TGG - chr2_2:36322895-36322914 Msa0249550:CDS 60.0%
TGGTGGGAATTCTCGGGCAC+TGG - chr2_2:36322912-36322931 Msa0249550:CDS 60.0%
! ACTCGGGGAACTCACCGGCT+TGG - chr2_2:36321752-36321771 Msa0249550:CDS 65.0%
GCTGCCGATCTCGGTACGCA+GGG - chr2_2:36322883-36322902 Msa0249550:CDS 65.0%
! ACTCGGGGAACTCACCGGCT+TGG - chr2_2:36321752-36321771 Msa0249550:CDS 65.0%
GCTGCCGATCTCGGTACGCA+GGG - chr2_2:36322883-36322902 Msa0249550:CDS 65.0%
!! GGGAACTCACCGGCTTGGCG+AGG - chr2_2:36321757-36321776 Msa0249550:CDS 70.0%
GGCTGCCGATCTCGGTACGC+AGG - chr2_2:36322882-36322901 Msa0249550:CDS 70.0%
!! GGGAACTCACCGGCTTGGCG+AGG - chr2_2:36321757-36321776 Msa0249550:CDS 70.0%
GGCTGCCGATCTCGGTACGC+AGG - chr2_2:36322882-36322901 Msa0249550:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 36321261 36323378 36321261 ID=Msa0249550;Name=Msa0249550
chr2_2 mRNA 36321261 36323378 36321261 ID=Msa0249550-mRNA-1;Parent=Msa0249550;Name=Msa0249550-mRNA-1;_AED=0.03;_eAED=0.03;_QI=257|1|1|1|1|1|2|253|489
chr2_2 exon 36321261 36322028 36321261 ID=Msa0249550-mRNA-1:exon:11668;Parent=Msa0249550-mRNA-1
chr2_2 exon 36322167 36323378 36322167 ID=Msa0249550-mRNA-1:exon:11667;Parent=Msa0249550-mRNA-1
chr2_2 five_prime_UTR 36323122 36323378 36323122 ID=Msa0249550-mRNA-1:five_prime_utr;Parent=Msa0249550-mRNA-1
chr2_2 CDS 36322167 36323121 36322167 ID=Msa0249550-mRNA-1:cds;Parent=Msa0249550-mRNA-1
chr2_2 CDS 36321514 36322028 36321514 ID=Msa0249550-mRNA-1:cds;Parent=Msa0249550-mRNA-1
chr2_2 three_prime_UTR 36321261 36321513 36321261 ID=Msa0249550-mRNA-1:three_prime_utr;Parent=Msa0249550-mRNA-1
Gene Sequence

>Msa0249550

ATGGAATCAAATTCCAAGAGTTTGAGCCTAGCTCCAGCTCTGAATCTCTTTCCAAACCTGAAACCCCCTCACAAAACCCTACTATTCCACCAAATATGTGTTCTTATTATCACATTTCTTGCATATGCTTCCTTTCATGCATCTAGGAAGCCTCCTAGTATTGTTAAAAGTGTTCTGGGACCCACAGTTCCAACCAATTCAACCCTTGATTCGGGTTGGCCGCCTTTTAATGGAACTCGGGGAACTCACCGGCTTGGCGAGGTTGATCTCGCATTTCTTACTTCTTACTCCATTGGCATGTATTTGGCTGGTCATGTTGGTGATAGGATTGATTTGAGGTTGTTTCTTGTGTTTGGGATGGTGGGCAGCGGTTTTTTTACGATACTTTTTGGGTTAGGATACTGGTTTGATGTTCATGTGTTGGGGTTTTTTGTCGGTGTTCAGATTGTTTGTGGAGTGTTTCAGTCAATTGGGTGGCCTTGTGTTGTTGCAGTTGTTGGGAATTGGCTTGGGGAATCAAAGAGGGGATTGATAATGGGGATATGGAATTCGCATACCTCGGTTGGGAATATCATTGGTTCGGTTATTGCTTCGGGTGTTTTGGAATTTGGATGGGGTTGGTCGTTTGTGGTGCCTGGAATTTTGATCATTTTCGTTGGGGTTTTGGTGTTTCTGTTTCTTGTTGTGAATCCGGTGGATATGGGGTTTGCGAGTCCTGGAATGGAAATTGAAATGAGTGTTGAAAGGGACGGTGCAGAGGATCTGCAGAAAGTCGAATCAGAGGAAGCAAAGCTAATTGATCCTGATAGTTCGATTTCAAATTCTTCGTCTGCTATTGGATTTTTAGAGGCGTGGAAAATACCTGGAGTCGCTCCGTTTGCTTTTTGTCTCTTTTTCTCAAAATTTGTTGCTTACACTTTCTTGTATTGGTTACCCTTCTACATAAGGCACACAGCGGTTGCTGGTGTGAATCTATCTCACAAAACTGCTGGGTTACTTTCAACAATATTTGATATTGGAGGAGTTCTAGGCGGAATCACCGCCGGTTTCATTTCTGATATGATTGAAGCTCGCGCTGTGACTTCAATCCTGTTCTTGTTTCTATCGATTCCAGCTCTGCTTTTGTATCGTGCTTTCGGGAGCATTTCTATGTTTACTAACATCACCTTGATGTTTCTTTCTGGATTTTTGGTGAATGGTCCGTACTCGCTAATTACAACTGCTGTGGCTGCCGATCTCGGTACGCAGGGCTTTAGTGGTGGGAATTCTCGGGCACTGGCTACTGTTACTGCAATCATTGATGGTACTGGTTCTGTTGGAGCTGCTCTTGGACCACTTTTAGCAGGTTATGTTTCAACCAGGGGATGGAACAGTGTATTTTTTATGCTCGTTTCATCTATTTTCTTTGCTGGTTTATTCTTGATTCAAGTTGCAAGGACTGAGATAAGAGAGAAGCTTTCAGGGAAGTGA

Protein sequence

>Msa0249550

MESNSKSLSLAPALNLFPNLKPPHKTLLFHQICVLIITFLAYASFHASRKPPSIVKSVLGPTVPTNSTLDSGWPPFNGTRGTHRLGEVDLAFLTSYSIGMYLAGHVGDRIDLRLFLVFGMVGSGFFTILFGLGYWFDVHVLGFFVGVQIVCGVFQSIGWPCVVAVVGNWLGESKRGLIMGIWNSHTSVGNIIGSVIASGVLEFGWGWSFVVPGILIIFVGVLVFLFLVVNPVDMGFASPGMEIEMSVERDGAEDLQKVESEEAKLIDPDSSISNSSSAIGFLEAWKIPGVAPFAFCLFFSKFVAYTFLYWLPFYIRHTAVAGVNLSHKTAGLLSTIFDIGGVLGGITAGFISDMIEARAVTSILFLFLSIPALLLYRAFGSISMFTNITLMFLSGFLVNGPYSLITTAVAADLGTQGFSGGNSRALATVTAIIDGTGSVGAALGPLLAGYVSTRGWNSVFFMLVSSIFFAGLFLIQVARTEIREKLSGK*