Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164960 | XP_003626318.2 | 87.385 | 325 | 12 | 4 | 1 | 318 | 14 | 316 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164960 | sp|Q9C7T4|BH096_ARATH | 47.904 | 334 | 141 | 7 | 1 | 315 | 1 | 320 | 2.72e-81 | 252 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164960 | G7KZP3 | 87.385 | 325 | 12 | 4 | 1 | 318 | 14 | 316 | 0.0 | 565 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1164960 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0120400 | Msa1164960 | 0.805229 | 1.476183e-49 | -8.615850e-47 |
| Msa0662240 | Msa1164960 | 0.801434 | 9.020479e-49 | -8.615850e-47 |
| Msa0221000 | Msa1164960 | 0.809659 | 1.696082e-50 | -8.615850e-47 |
| Msa0225100 | Msa1164960 | 0.801619 | 8.267981e-49 | -8.615850e-47 |
| Msa0367870 | Msa1164960 | 0.814615 | 1.407901e-51 | -8.615850e-47 |
| Msa0378720 | Msa1164960 | 0.801874 | 7.328773e-49 | -8.615850e-47 |
| Msa0428920 | Msa1164960 | 0.804855 | 1.767545e-49 | -8.615850e-47 |
| Msa1039020 | Msa1164960 | 0.875001 | 4.344355e-68 | -8.615850e-47 |
| Msa1089450 | Msa1164960 | 0.809650 | 1.703842e-50 | -8.615850e-47 |
| Msa0240900 | Msa1164960 | 0.809405 | 1.923314e-50 | -8.615850e-47 |
| Msa0266180 | Msa1164960 | 0.812684 | 3.744729e-51 | -8.615850e-47 |
| Msa0267270 | Msa1164960 | 0.875360 | 3.275635e-68 | -8.615850e-47 |
| Msa0337700 | Msa1164960 | 0.814089 | 1.839542e-51 | -8.615850e-47 |
| Msa1145810 | Msa1164960 | 0.815129 | 1.082730e-51 | -8.615850e-47 |
| Msa1155170 | Msa1164960 | -0.815733 | 7.946497e-52 | -8.615850e-47 |
| Msa1164960 | Msa1225860 | -0.826955 | 2.041348e-54 | -8.615850e-47 |
| Msa1164960 | Msa1267770 | 0.801773 | 7.687193e-49 | -8.615850e-47 |
| Msa1164960 | Msa1297230 | 0.813558 | 2.409162e-51 | -8.615850e-47 |
| Msa1164960 | Msa1298370 | 0.805497 | 1.297429e-49 | -8.615850e-47 |
| Msa1164960 | Msa1366340 | 0.823387 | 1.423621e-53 | -8.615850e-47 |
| Msa1164960 | Msa1393880 | 0.919123 | 6.665431e-87 | -8.615850e-47 |
| Msa1164960 | Msa1425880 | 0.824465 | 7.953367e-54 | -8.615850e-47 |
| Msa0583360 | Msa1164960 | -0.822748 | 2.006638e-53 | -8.615850e-47 |
| Msa0967380 | Msa1164960 | 0.822817 | 1.933953e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164960 | MtrunA17_Chr7g0273081 | 87.385 | 325 | 12 | 4 | 1 | 318 | 14 | 316 | 0.0 | 565 |
| Msa1164960 | MtrunA17_Chr1g0191571 | 57.941 | 340 | 102 | 13 | 1 | 315 | 14 | 337 | 4.47e-109 | 320 |
| Msa1164960 | MtrunA17_Chr3g0132471 | 50.613 | 326 | 135 | 6 | 1 | 311 | 1 | 315 | 9.26e-101 | 299 |
| Msa1164960 | MtrunA17_Chr5g0426851 | 46.037 | 328 | 131 | 13 | 1 | 313 | 1 | 297 | 8.25e-82 | 249 |
| Msa1164960 | MtrunA17_Chr8g0366551 | 56.338 | 213 | 74 | 4 | 114 | 314 | 114 | 319 | 1.36e-72 | 227 |
| Msa1164960 | MtrunA17_Chr8g0345871 | 53.846 | 195 | 86 | 2 | 114 | 308 | 171 | 361 | 5.85e-57 | 188 |
| Msa1164960 | MtrunA17_Chr0c01g0489461 | 44.298 | 228 | 102 | 7 | 106 | 314 | 177 | 398 | 1.96e-49 | 169 |
| Msa1164960 | MtrunA17_Chr2g0287761 | 40.761 | 184 | 104 | 3 | 124 | 303 | 1 | 183 | 7.95e-35 | 125 |
| Msa1164960 | MtrunA17_Chr1g0158941 | 35.088 | 228 | 120 | 5 | 101 | 303 | 66 | 290 | 1.06e-31 | 120 |
| Msa1164960 | MtrunA17_Chr5g0400661 | 24.775 | 222 | 143 | 7 | 98 | 305 | 122 | 333 | 5.09e-13 | 68.9 |
| Msa1164960 | MtrunA17_Chr3g0126361 | 48.438 | 64 | 29 | 1 | 96 | 155 | 69 | 132 | 6.50e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1164960 | AT1G72210.1 | 47.904 | 334 | 141 | 7 | 1 | 315 | 1 | 320 | 2.76e-82 | 252 |
| Msa1164960 | AT1G22490.1 | 44.615 | 325 | 146 | 8 | 1 | 312 | 1 | 304 | 1.88e-73 | 229 |
| Msa1164960 | AT1G72210.2 | 47.682 | 302 | 129 | 6 | 1 | 285 | 1 | 290 | 4.47e-71 | 223 |
| Msa1164960 | AT1G22490.2 | 45.000 | 300 | 127 | 8 | 1 | 285 | 1 | 277 | 1.04e-62 | 202 |
| Msa1164960 | AT4G01460.1 | 48.309 | 207 | 93 | 3 | 114 | 311 | 105 | 306 | 5.95e-56 | 184 |
| Msa1164960 | AT4G01460.2 | 48.309 | 207 | 93 | 3 | 114 | 311 | 105 | 306 | 5.95e-56 | 184 |
| Msa1164960 | AT5G65320.1 | 47.980 | 198 | 97 | 3 | 120 | 311 | 98 | 295 | 1.31e-52 | 175 |
| Msa1164960 | AT2G46810.2 | 47.150 | 193 | 95 | 3 | 115 | 306 | 112 | 298 | 2.14e-51 | 172 |
| Msa1164960 | AT2G46810.3 | 47.150 | 193 | 95 | 3 | 115 | 306 | 172 | 358 | 1.22e-50 | 172 |
| Msa1164960 | AT2G46810.1 | 47.150 | 193 | 95 | 3 | 115 | 306 | 184 | 370 | 1.68e-50 | 172 |
| Msa1164960 | AT5G46690.1 | 44.828 | 232 | 87 | 5 | 114 | 311 | 78 | 302 | 1.18e-49 | 168 |
| Msa1164960 | AT3G24140.1 | 41.410 | 227 | 116 | 3 | 104 | 314 | 177 | 402 | 5.47e-48 | 166 |
| Msa1164960 | AT3G24140.2 | 40.969 | 227 | 117 | 3 | 104 | 314 | 177 | 402 | 1.53e-47 | 165 |
| Msa1164960 | AT3G61950.2 | 45.876 | 194 | 97 | 2 | 114 | 306 | 117 | 303 | 3.84e-47 | 161 |
| Msa1164960 | AT3G61950.1 | 45.876 | 194 | 97 | 2 | 114 | 306 | 168 | 354 | 3.31e-46 | 160 |
| Msa1164960 | AT2G46810.4 | 41.629 | 221 | 94 | 4 | 115 | 306 | 112 | 326 | 8.92e-46 | 158 |
| Msa1164960 | AT5G65320.2 | 49.708 | 171 | 81 | 2 | 120 | 285 | 98 | 268 | 1.14e-45 | 156 |
| Msa1164960 | AT3G61950.6 | 46.541 | 159 | 78 | 1 | 114 | 272 | 117 | 268 | 1.60e-39 | 141 |
| Msa1164960 | AT3G61950.3 | 46.541 | 159 | 78 | 1 | 114 | 272 | 168 | 319 | 1.03e-38 | 140 |
| Msa1164960 | AT5G46690.2 | 43.689 | 206 | 75 | 5 | 114 | 285 | 78 | 276 | 1.69e-38 | 138 |
| Msa1164960 | AT3G06120.1 | 38.095 | 189 | 105 | 3 | 124 | 301 | 1 | 188 | 4.63e-32 | 119 |
| Msa1164960 | AT5G53210.2 | 48.485 | 99 | 34 | 2 | 104 | 186 | 67 | 164 | 1.02e-20 | 91.7 |
| Msa1164960 | AT5G53210.1 | 48.485 | 99 | 34 | 2 | 104 | 186 | 67 | 164 | 1.26e-20 | 91.7 |
| Msa1164960 | AT3G61950.4 | 71.429 | 42 | 12 | 0 | 114 | 155 | 168 | 209 | 1.45e-13 | 69.3 |
| Msa1164960 | AT3G61950.5 | 71.429 | 42 | 12 | 0 | 114 | 155 | 168 | 209 | 1.45e-13 | 69.3 |
Find 48 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATTATGCTTATGGAAAT+TGG | 0.223168 | 7_4:+56804998 | Msa1164960:CDS |
| ACCATCTTCAAGAGCTGTTT+TGG | 0.261447 | 7_4:-56805725 | None:intergenic |
| GGTGATCAAGCATCAATTAT+TGG | 0.265730 | 7_4:+56805449 | Msa1164960:CDS |
| GTTGAATTCTTTCCAACATT+TGG | 0.301786 | 7_4:-56806052 | None:intergenic |
| GAGCAGAAGCTACAATTTCT+TGG | 0.311027 | 7_4:+56805500 | Msa1164960:CDS |
| GTGATCAAGCATCAATTATT+GGG | 0.314095 | 7_4:+56805450 | Msa1164960:CDS |
| CATCAGCTGTAGTGACATTA+AGG | 0.320979 | 7_4:-56805784 | None:intergenic |
| ACCCTTTGGACGTAAGATTC+AGG | 0.337296 | 7_4:-56805261 | None:intergenic |
| TTGCTTCAGAATCTGTTAAC+AGG | 0.346873 | 7_4:-56804894 | None:intergenic |
| CAAACAGAGAATTATGCTTA+TGG | 0.362320 | 7_4:+56804991 | Msa1164960:CDS |
| CTTCTATTCTATCAGCGTTA+AGG | 0.373348 | 7_4:+56805814 | Msa1164960:CDS |
| AAGCATAATTCTCTGTTTGT+TGG | 0.375728 | 7_4:-56804987 | None:intergenic |
| GTTGAAGATGATTGCAAGCT+TGG | 0.385709 | 7_4:+56805999 | Msa1164960:CDS |
| ACAATCATTGTTGCCACAAA+TGG | 0.405629 | 7_4:+56805056 | Msa1164960:CDS |
| CCACAAGACCCTTTCACCTA+TGG | 0.431613 | 7_4:+56804844 | Msa1164960:CDS |
| GTTCTAGTGCCATGGACCTC+TGG | 0.443315 | 7_4:-56804807 | None:intergenic |
| TTAACAGGTTGTAATTGTAA+TGG | 0.451750 | 7_4:-56804879 | None:intergenic |
| ACCAAAACAGCTCTTGAAGA+TGG | 0.460812 | 7_4:+56805724 | Msa1164960:CDS |
| ACATTGCTGTAGAACGCAAC+AGG | 0.469202 | 7_4:+56805193 | Msa1164960:CDS |
| TTCTTACTTTGAGATTTGCA+TGG | 0.473698 | 7_4:-56805691 | None:intergenic |
| TGTTGAATCCATAGGTGAAA+GGG | 0.493303 | 7_4:-56804852 | None:intergenic |
| AAGATGGTTTCTAGTTTGCA+TGG | 0.504712 | 7_4:+56805740 | Msa1164960:CDS |
| GGCAACAATGATTGTGGTGG+TGG | 0.505665 | 7_4:-56805048 | None:intergenic |
| TTTGACACTTCATCCATTTG+TGG | 0.511454 | 7_4:-56805069 | None:intergenic |
| TGCCTGAATCTTACGTCCAA+AGG | 0.512531 | 7_4:+56805259 | Msa1164960:CDS |
| GCCTGAATCTTACGTCCAAA+GGG | 0.523230 | 7_4:+56805260 | Msa1164960:CDS |
| TCTTGTGGATATAGTAGAGT+TGG | 0.525531 | 7_4:-56804829 | None:intergenic |
| AACAATGATTGTGGTGGTGG+TGG | 0.531255 | 7_4:-56805045 | None:intergenic |
| CTGTCACTTGTTGAGTATTG+TGG | 0.536473 | 7_4:-56805584 | None:intergenic |
| TTGTTGAATCCATAGGTGAA+AGG | 0.539793 | 7_4:-56804853 | None:intergenic |
| CCATAGGTGAAAGGGTCTTG+TGG | 0.567251 | 7_4:-56804844 | None:intergenic |
| AAACAGCCTATGCAATAACT+AGG | 0.570827 | 7_4:-56806209 | None:intergenic |
| GAAATTGAACTATCTAAAGA+CGG | 0.572375 | 7_4:-56805093 | None:intergenic |
| ATGGTCTTTGTTGAATCCAT+AGG | 0.572517 | 7_4:-56804860 | None:intergenic |
| TAGAGTTGGTTCTAGTGCCA+TGG | 0.572651 | 7_4:-56804815 | None:intergenic |
| GATGTACCTAGTTATTGCAT+AGG | 0.579097 | 7_4:+56806203 | Msa1164960:three_prime_UTR |
| TGCAGCTGTATACCAAATGT+TGG | 0.583918 | 7_4:+56806040 | Msa1164960:CDS |
| TGATTGCAAGCTTGGATCAG+TGG | 0.587540 | 7_4:+56806007 | Msa1164960:CDS |
| CAGAAGCTACAATTTCTTGG+TGG | 0.593039 | 7_4:+56805503 | Msa1164960:CDS |
| TGATCAAGCATCAATTATTG+GGG | 0.599410 | 7_4:+56805451 | Msa1164960:CDS |
| AACCTTCAAAATCAAGAACA+AGG | 0.614022 | 7_4:+56804937 | Msa1164960:CDS |
| ATGTGTTTACCAGAGGTCCA+TGG | 0.637006 | 7_4:+56804798 | None:intergenic |
| AACTAGGTACATCTTGAGAG+AGG | 0.642765 | 7_4:-56806193 | None:intergenic |
| TGCTGATATTGAAGTGACAA+TGG | 0.646131 | 7_4:+56805661 | Msa1164960:CDS |
| ATTTGTGGCAACAATGATTG+TGG | 0.649128 | 7_4:-56805054 | None:intergenic |
| ACTTGTTGAGTATTGTGGAA+AGG | 0.653314 | 7_4:-56805579 | None:intergenic |
| TGTGGCAACAATGATTGTGG+TGG | 0.680500 | 7_4:-56805051 | None:intergenic |
| GATCAAGCATCAATTATTGG+GGG | 0.757063 | 7_4:+56805452 | Msa1164960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTATTTTGTAATTTGT+AGG | + | chr7_4:56805977-56805996 | Msa1164960:intron | 10.0% |
| !! | ATCTTAAAGTTAAAAAAAAA+GGG | - | chr7_4:56806132-56806151 | None:intergenic | 10.0% |
| !!! | AATTTTATTTTGTAATTTGT+AGG | + | chr7_4:56805977-56805996 | Msa1164960:intron | 10.0% |
| !! | ATCTTAAAGTTAAAAAAAAA+GGG | - | chr7_4:56806132-56806151 | None:intergenic | 10.0% |
| !!! | TCATTTTTAAATTGAAATTG+CGG | - | chr7_4:56805399-56805418 | None:intergenic | 15.0% |
| !! | GATCTTAAAGTTAAAAAAAA+AGG | - | chr7_4:56806133-56806152 | None:intergenic | 15.0% |
| !!! | TCATTTTTAAATTGAAATTG+CGG | - | chr7_4:56805399-56805418 | None:intergenic | 15.0% |
| !! | GATCTTAAAGTTAAAAAAAA+AGG | - | chr7_4:56806133-56806152 | None:intergenic | 15.0% |
| !!! | CTTCTATTACTTTTAAATTG+TGG | + | chr7_4:56805285-56805304 | Msa1164960:intron | 20.0% |
| !!! | TTTTGATTGATGAATTTTTC+AGG | + | chr7_4:56805427-56805446 | Msa1164960:intron | 20.0% |
| !!! | TTTGATTGATGAATTTTTCA+GGG | + | chr7_4:56805428-56805447 | Msa1164960:intron | 20.0% |
| !! | AGAAAAAAAAAAACATGACA+GGG | - | chr7_4:56805854-56805873 | None:intergenic | 20.0% |
| !! | AAGAAAAAAAAAAACATGAC+AGG | - | chr7_4:56805855-56805874 | None:intergenic | 20.0% |
| !! | TTAAGTGCTTACAATAATTT+AGG | - | chr7_4:56805930-56805949 | None:intergenic | 20.0% |
| !!! | CTTCTATTACTTTTAAATTG+TGG | + | chr7_4:56805285-56805304 | Msa1164960:intron | 20.0% |
| !!! | TTTTGATTGATGAATTTTTC+AGG | + | chr7_4:56805427-56805446 | Msa1164960:intron | 20.0% |
| !!! | TTTGATTGATGAATTTTTCA+GGG | + | chr7_4:56805428-56805447 | Msa1164960:intron | 20.0% |
| !! | AGAAAAAAAAAAACATGACA+GGG | - | chr7_4:56805854-56805873 | None:intergenic | 20.0% |
| !! | AAGAAAAAAAAAAACATGAC+AGG | - | chr7_4:56805855-56805874 | None:intergenic | 20.0% |
| !! | TTAAGTGCTTACAATAATTT+AGG | - | chr7_4:56805930-56805949 | None:intergenic | 20.0% |
| ! | TTAACAGGTTGTAATTGTAA+TGG | - | chr7_4:56804882-56804901 | None:intergenic | 25.0% |
| ! | AGAATTATGCTTATGGAAAT+TGG | + | chr7_4:56804998-56805017 | Msa1164960:CDS | 25.0% |
| ! | GAAATTGAACTATCTAAAGA+CGG | - | chr7_4:56805096-56805115 | None:intergenic | 25.0% |
| ! | AAGGTGAAAAATTCAGAAAA+GGG | - | chr7_4:56805563-56805582 | None:intergenic | 25.0% |
| ! | AAAGGTGAAAAATTCAGAAA+AGG | - | chr7_4:56805564-56805583 | None:intergenic | 25.0% |
| ! | TTAACAGGTTGTAATTGTAA+TGG | - | chr7_4:56804882-56804901 | None:intergenic | 25.0% |
| ! | AGAATTATGCTTATGGAAAT+TGG | + | chr7_4:56804998-56805017 | Msa1164960:CDS | 25.0% |
| ! | GAAATTGAACTATCTAAAGA+CGG | - | chr7_4:56805096-56805115 | None:intergenic | 25.0% |
| ! | AAGGTGAAAAATTCAGAAAA+GGG | - | chr7_4:56805563-56805582 | None:intergenic | 25.0% |
| ! | AAAGGTGAAAAATTCAGAAA+AGG | - | chr7_4:56805564-56805583 | None:intergenic | 25.0% |
| !! | TTGATTTTGAAGGTTGAAGT+TGG | - | chr7_4:56804932-56804951 | None:intergenic | 30.0% |
| AACCTTCAAAATCAAGAACA+AGG | + | chr7_4:56804937-56804956 | Msa1164960:CDS | 30.0% | |
| ! | AACCTTGTTCTTGATTTTGA+AGG | - | chr7_4:56804942-56804961 | None:intergenic | 30.0% |
| AAGCATAATTCTCTGTTTGT+TGG | - | chr7_4:56804990-56805009 | None:intergenic | 30.0% | |
| CAAACAGAGAATTATGCTTA+TGG | + | chr7_4:56804991-56805010 | Msa1164960:CDS | 30.0% | |
| !! | AAAGTAATAGAAGTACCCTT+TGG | - | chr7_4:56805278-56805297 | None:intergenic | 30.0% |
| ! | TGCATTTTGCCTCAATATAA+AGG | - | chr7_4:56805333-56805352 | None:intergenic | 30.0% |
| GTGATCAAGCATCAATTATT+GGG | + | chr7_4:56805450-56805469 | Msa1164960:CDS | 30.0% | |
| TGATCAAGCATCAATTATTG+GGG | + | chr7_4:56805451-56805470 | Msa1164960:CDS | 30.0% | |
| !! | TTCTTACTTTGAGATTTGCA+TGG | - | chr7_4:56805694-56805713 | None:intergenic | 30.0% |
| GCTAAAAAGTGGTTAGAATT+TGG | - | chr7_4:56805885-56805904 | None:intergenic | 30.0% | |
| TTCAAGAGAAAGCTAAAAAG+TGG | - | chr7_4:56805896-56805915 | None:intergenic | 30.0% | |
| GTTGAATTCTTTCCAACATT+TGG | - | chr7_4:56806055-56806074 | None:intergenic | 30.0% | |
| !! | TTGATTTTGAAGGTTGAAGT+TGG | - | chr7_4:56804932-56804951 | None:intergenic | 30.0% |
| AACCTTCAAAATCAAGAACA+AGG | + | chr7_4:56804937-56804956 | Msa1164960:CDS | 30.0% | |
| ! | AACCTTGTTCTTGATTTTGA+AGG | - | chr7_4:56804942-56804961 | None:intergenic | 30.0% |
| AAGCATAATTCTCTGTTTGT+TGG | - | chr7_4:56804990-56805009 | None:intergenic | 30.0% | |
| CAAACAGAGAATTATGCTTA+TGG | + | chr7_4:56804991-56805010 | Msa1164960:CDS | 30.0% | |
| !! | AAAGTAATAGAAGTACCCTT+TGG | - | chr7_4:56805278-56805297 | None:intergenic | 30.0% |
| ! | TGCATTTTGCCTCAATATAA+AGG | - | chr7_4:56805333-56805352 | None:intergenic | 30.0% |
| GTGATCAAGCATCAATTATT+GGG | + | chr7_4:56805450-56805469 | Msa1164960:CDS | 30.0% | |
| TGATCAAGCATCAATTATTG+GGG | + | chr7_4:56805451-56805470 | Msa1164960:CDS | 30.0% | |
| !! | TTCTTACTTTGAGATTTGCA+TGG | - | chr7_4:56805694-56805713 | None:intergenic | 30.0% |
| GCTAAAAAGTGGTTAGAATT+TGG | - | chr7_4:56805885-56805904 | None:intergenic | 30.0% | |
| TTCAAGAGAAAGCTAAAAAG+TGG | - | chr7_4:56805896-56805915 | None:intergenic | 30.0% | |
| GTTGAATTCTTTCCAACATT+TGG | - | chr7_4:56806055-56806074 | None:intergenic | 30.0% | |
| TCTTGTGGATATAGTAGAGT+TGG | - | chr7_4:56804832-56804851 | None:intergenic | 35.0% | |
| TGTTGAATCCATAGGTGAAA+GGG | - | chr7_4:56804855-56804874 | None:intergenic | 35.0% | |
| TTGTTGAATCCATAGGTGAA+AGG | - | chr7_4:56804856-56804875 | None:intergenic | 35.0% | |
| ATGGTCTTTGTTGAATCCAT+AGG | - | chr7_4:56804863-56804882 | None:intergenic | 35.0% | |
| TTGCTTCAGAATCTGTTAAC+AGG | - | chr7_4:56804897-56804916 | None:intergenic | 35.0% | |
| ATTTGTGGCAACAATGATTG+TGG | - | chr7_4:56805057-56805076 | None:intergenic | 35.0% | |
| ACAATCATTGTTGCCACAAA+TGG | + | chr7_4:56805056-56805075 | Msa1164960:CDS | 35.0% | |
| TTTGACACTTCATCCATTTG+TGG | - | chr7_4:56805072-56805091 | None:intergenic | 35.0% | |
| TGCTGCAAACCTTTATATTG+AGG | + | chr7_4:56805321-56805340 | Msa1164960:intron | 35.0% | |
| GGTGATCAAGCATCAATTAT+TGG | + | chr7_4:56805449-56805468 | Msa1164960:CDS | 35.0% | |
| GATCAAGCATCAATTATTGG+GGG | + | chr7_4:56805452-56805471 | Msa1164960:CDS | 35.0% | |
| TGGTGTTCAGAAACAAAAAG+AGG | + | chr7_4:56805523-56805542 | Msa1164960:CDS | 35.0% | |
| ! | ACTTGTTGAGTATTGTGGAA+AGG | - | chr7_4:56805582-56805601 | None:intergenic | 35.0% |
| !! | TGAGAGTTCTGAGACAAAAA+TGG | + | chr7_4:56805613-56805632 | Msa1164960:CDS | 35.0% |
| !! | GAGAGTTCTGAGACAAAAAT+GGG | + | chr7_4:56805614-56805633 | Msa1164960:CDS | 35.0% |
| TGCTGATATTGAAGTGACAA+TGG | + | chr7_4:56805661-56805680 | Msa1164960:CDS | 35.0% | |
| !! | AAGATGGTTTCTAGTTTGCA+TGG | + | chr7_4:56805740-56805759 | Msa1164960:CDS | 35.0% |
| CTTCTATTCTATCAGCGTTA+AGG | + | chr7_4:56805814-56805833 | Msa1164960:CDS | 35.0% | |
| AGTGGTTAGAATTTGGAAAG+TGG | - | chr7_4:56805878-56805897 | None:intergenic | 35.0% | |
| GATGTACCTAGTTATTGCAT+AGG | + | chr7_4:56806203-56806222 | Msa1164960:three_prime_UTR | 35.0% | |
| AAACAGCCTATGCAATAACT+AGG | - | chr7_4:56806212-56806231 | None:intergenic | 35.0% | |
| TCTTGTGGATATAGTAGAGT+TGG | - | chr7_4:56804832-56804851 | None:intergenic | 35.0% | |
| TGTTGAATCCATAGGTGAAA+GGG | - | chr7_4:56804855-56804874 | None:intergenic | 35.0% | |
| TTGTTGAATCCATAGGTGAA+AGG | - | chr7_4:56804856-56804875 | None:intergenic | 35.0% | |
| ATGGTCTTTGTTGAATCCAT+AGG | - | chr7_4:56804863-56804882 | None:intergenic | 35.0% | |
| TTGCTTCAGAATCTGTTAAC+AGG | - | chr7_4:56804897-56804916 | None:intergenic | 35.0% | |
| ATTTGTGGCAACAATGATTG+TGG | - | chr7_4:56805057-56805076 | None:intergenic | 35.0% | |
| ACAATCATTGTTGCCACAAA+TGG | + | chr7_4:56805056-56805075 | Msa1164960:CDS | 35.0% | |
| TTTGACACTTCATCCATTTG+TGG | - | chr7_4:56805072-56805091 | None:intergenic | 35.0% | |
| TGCTGCAAACCTTTATATTG+AGG | + | chr7_4:56805321-56805340 | Msa1164960:intron | 35.0% | |
| GGTGATCAAGCATCAATTAT+TGG | + | chr7_4:56805449-56805468 | Msa1164960:CDS | 35.0% | |
| GATCAAGCATCAATTATTGG+GGG | + | chr7_4:56805452-56805471 | Msa1164960:CDS | 35.0% | |
| TGGTGTTCAGAAACAAAAAG+AGG | + | chr7_4:56805523-56805542 | Msa1164960:CDS | 35.0% | |
| ! | ACTTGTTGAGTATTGTGGAA+AGG | - | chr7_4:56805582-56805601 | None:intergenic | 35.0% |
| !! | TGAGAGTTCTGAGACAAAAA+TGG | + | chr7_4:56805613-56805632 | Msa1164960:CDS | 35.0% |
| !! | GAGAGTTCTGAGACAAAAAT+GGG | + | chr7_4:56805614-56805633 | Msa1164960:CDS | 35.0% |
| TGCTGATATTGAAGTGACAA+TGG | + | chr7_4:56805661-56805680 | Msa1164960:CDS | 35.0% | |
| !! | AAGATGGTTTCTAGTTTGCA+TGG | + | chr7_4:56805740-56805759 | Msa1164960:CDS | 35.0% |
| CTTCTATTCTATCAGCGTTA+AGG | + | chr7_4:56805814-56805833 | Msa1164960:CDS | 35.0% | |
| AGTGGTTAGAATTTGGAAAG+TGG | - | chr7_4:56805878-56805897 | None:intergenic | 35.0% | |
| GATGTACCTAGTTATTGCAT+AGG | + | chr7_4:56806203-56806222 | Msa1164960:three_prime_UTR | 35.0% | |
| AAACAGCCTATGCAATAACT+AGG | - | chr7_4:56806212-56806231 | None:intergenic | 35.0% | |
| !!! | TGTTTTGACTCTGCGTTTCT+TGG | - | chr7_4:56805133-56805152 | None:intergenic | 40.0% |
| GAGGCAAAATGCAGAAATTG+CGG | + | chr7_4:56805340-56805359 | Msa1164960:intron | 40.0% | |
| CTGCAAGAGAAACGATTCTA+AGG | - | chr7_4:56805376-56805395 | None:intergenic | 40.0% | |
| GAGCAGAAGCTACAATTTCT+TGG | + | chr7_4:56805500-56805519 | Msa1164960:CDS | 40.0% | |
| CAGAAGCTACAATTTCTTGG+TGG | + | chr7_4:56805503-56805522 | Msa1164960:CDS | 40.0% | |
| ! | CTGTCACTTGTTGAGTATTG+TGG | - | chr7_4:56805587-56805606 | None:intergenic | 40.0% |
| !! | AGTTCTGAGACAAAAATGGG+TGG | + | chr7_4:56805617-56805636 | Msa1164960:CDS | 40.0% |
| ACCAAAACAGCTCTTGAAGA+TGG | + | chr7_4:56805724-56805743 | Msa1164960:CDS | 40.0% | |
| ! | ACCATCTTCAAGAGCTGTTT+TGG | - | chr7_4:56805728-56805747 | None:intergenic | 40.0% |
| CATCAGCTGTAGTGACATTA+AGG | - | chr7_4:56805787-56805806 | None:intergenic | 40.0% | |
| AGCGTTAAGGTAATTGTCTG+TGG | + | chr7_4:56805827-56805846 | Msa1164960:intron | 40.0% | |
| GTTGAAGATGATTGCAAGCT+TGG | + | chr7_4:56805999-56806018 | Msa1164960:CDS | 40.0% | |
| TGCAGCTGTATACCAAATGT+TGG | + | chr7_4:56806040-56806059 | Msa1164960:CDS | 40.0% | |
| AACTAGGTACATCTTGAGAG+AGG | - | chr7_4:56806196-56806215 | None:intergenic | 40.0% | |
| !!! | TGTTTTGACTCTGCGTTTCT+TGG | - | chr7_4:56805133-56805152 | None:intergenic | 40.0% |
| GAGGCAAAATGCAGAAATTG+CGG | + | chr7_4:56805340-56805359 | Msa1164960:intron | 40.0% | |
| CTGCAAGAGAAACGATTCTA+AGG | - | chr7_4:56805376-56805395 | None:intergenic | 40.0% | |
| GAGCAGAAGCTACAATTTCT+TGG | + | chr7_4:56805500-56805519 | Msa1164960:CDS | 40.0% | |
| CAGAAGCTACAATTTCTTGG+TGG | + | chr7_4:56805503-56805522 | Msa1164960:CDS | 40.0% | |
| ! | CTGTCACTTGTTGAGTATTG+TGG | - | chr7_4:56805587-56805606 | None:intergenic | 40.0% |
| !! | AGTTCTGAGACAAAAATGGG+TGG | + | chr7_4:56805617-56805636 | Msa1164960:CDS | 40.0% |
| ACCAAAACAGCTCTTGAAGA+TGG | + | chr7_4:56805724-56805743 | Msa1164960:CDS | 40.0% | |
| ! | ACCATCTTCAAGAGCTGTTT+TGG | - | chr7_4:56805728-56805747 | None:intergenic | 40.0% |
| CATCAGCTGTAGTGACATTA+AGG | - | chr7_4:56805787-56805806 | None:intergenic | 40.0% | |
| AGCGTTAAGGTAATTGTCTG+TGG | + | chr7_4:56805827-56805846 | Msa1164960:intron | 40.0% | |
| GTTGAAGATGATTGCAAGCT+TGG | + | chr7_4:56805999-56806018 | Msa1164960:CDS | 40.0% | |
| TGCAGCTGTATACCAAATGT+TGG | + | chr7_4:56806040-56806059 | Msa1164960:CDS | 40.0% | |
| AACTAGGTACATCTTGAGAG+AGG | - | chr7_4:56806196-56806215 | None:intergenic | 40.0% | |
| !! | TAGAGTTGGTTCTAGTGCCA+TGG | - | chr7_4:56804818-56804837 | None:intergenic | 45.0% |
| !! | AACAATGATTGTGGTGGTGG+TGG | - | chr7_4:56805048-56805067 | None:intergenic | 45.0% |
| TGTGGCAACAATGATTGTGG+TGG | - | chr7_4:56805054-56805073 | None:intergenic | 45.0% | |
| ACATTGCTGTAGAACGCAAC+AGG | + | chr7_4:56805193-56805212 | Msa1164960:CDS | 45.0% | |
| TGCCTGAATCTTACGTCCAA+AGG | + | chr7_4:56805259-56805278 | Msa1164960:CDS | 45.0% | |
| GCCTGAATCTTACGTCCAAA+GGG | + | chr7_4:56805260-56805279 | Msa1164960:CDS | 45.0% | |
| ACCCTTTGGACGTAAGATTC+AGG | - | chr7_4:56805264-56805283 | None:intergenic | 45.0% | |
| TGAGACAAAAATGGGTGGTG+AGG | + | chr7_4:56805622-56805641 | Msa1164960:CDS | 45.0% | |
| TGATTGCAAGCTTGGATCAG+TGG | + | chr7_4:56806007-56806026 | Msa1164960:CDS | 45.0% | |
| !! | TAGAGTTGGTTCTAGTGCCA+TGG | - | chr7_4:56804818-56804837 | None:intergenic | 45.0% |
| !! | AACAATGATTGTGGTGGTGG+TGG | - | chr7_4:56805048-56805067 | None:intergenic | 45.0% |
| TGTGGCAACAATGATTGTGG+TGG | - | chr7_4:56805054-56805073 | None:intergenic | 45.0% | |
| ACATTGCTGTAGAACGCAAC+AGG | + | chr7_4:56805193-56805212 | Msa1164960:CDS | 45.0% | |
| TGCCTGAATCTTACGTCCAA+AGG | + | chr7_4:56805259-56805278 | Msa1164960:CDS | 45.0% | |
| GCCTGAATCTTACGTCCAAA+GGG | + | chr7_4:56805260-56805279 | Msa1164960:CDS | 45.0% | |
| ACCCTTTGGACGTAAGATTC+AGG | - | chr7_4:56805264-56805283 | None:intergenic | 45.0% | |
| TGAGACAAAAATGGGTGGTG+AGG | + | chr7_4:56805622-56805641 | Msa1164960:CDS | 45.0% | |
| TGATTGCAAGCTTGGATCAG+TGG | + | chr7_4:56806007-56806026 | Msa1164960:CDS | 45.0% | |
| CCATAGGTGAAAGGGTCTTG+TGG | - | chr7_4:56804847-56804866 | None:intergenic | 50.0% | |
| CCACAAGACCCTTTCACCTA+TGG | + | chr7_4:56804844-56804863 | Msa1164960:CDS | 50.0% | |
| GGCAACAATGATTGTGGTGG+TGG | - | chr7_4:56805051-56805070 | None:intergenic | 50.0% | |
| CCATAGGTGAAAGGGTCTTG+TGG | - | chr7_4:56804847-56804866 | None:intergenic | 50.0% | |
| CCACAAGACCCTTTCACCTA+TGG | + | chr7_4:56804844-56804863 | Msa1164960:CDS | 50.0% | |
| GGCAACAATGATTGTGGTGG+TGG | - | chr7_4:56805051-56805070 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 56804809 | 56806277 | 56804809 | ID=Msa1164960;Name=Msa1164960 |
| chr7_4 | mRNA | 56804809 | 56806277 | 56804809 | ID=Msa1164960-mRNA-1;Parent=Msa1164960;Name=Msa1164960-mRNA-1;_AED=0.06;_eAED=0.06;_QI=8|1|1|1|1|1|3|174|318 |
| chr7_4 | exon | 56804809 | 56805281 | 56804809 | ID=Msa1164960-mRNA-1:exon:17001;Parent=Msa1164960-mRNA-1 |
| chr7_4 | exon | 56805449 | 56805835 | 56805449 | ID=Msa1164960-mRNA-1:exon:17002;Parent=Msa1164960-mRNA-1 |
| chr7_4 | exon | 56805999 | 56806277 | 56805999 | ID=Msa1164960-mRNA-1:exon:17003;Parent=Msa1164960-mRNA-1 |
| chr7_4 | five_prime_UTR | 56804809 | 56804816 | 56804809 | ID=Msa1164960-mRNA-1:five_prime_utr;Parent=Msa1164960-mRNA-1 |
| chr7_4 | CDS | 56804817 | 56805281 | 56804817 | ID=Msa1164960-mRNA-1:cds;Parent=Msa1164960-mRNA-1 |
| chr7_4 | CDS | 56805449 | 56805835 | 56805449 | ID=Msa1164960-mRNA-1:cds;Parent=Msa1164960-mRNA-1 |
| chr7_4 | CDS | 56805999 | 56806103 | 56805999 | ID=Msa1164960-mRNA-1:cds;Parent=Msa1164960-mRNA-1 |
| chr7_4 | three_prime_UTR | 56806104 | 56806277 | 56806104 | ID=Msa1164960-mRNA-1:three_prime_utr;Parent=Msa1164960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
