AlfalfaGEDB | Msa0267270

M. sativa cultivar zhongmu-4 / Msa0267270

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0267270	XP_003626318.2	87.077	325	11	5	1	316	14	316	0.0	558

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0267270	sp\|Q9C7T4\|BH096_ARATH	46.154	338	139	5	1	313	1	320	4.05e-81	251

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0267270	G7KZP3	87.077	325	11	5	1	316	14	316	0.0	558

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TFs/TRs:

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Gene ID	Type	Classification
Msa0267270	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0267270	0.810271	1.252563e-50	-8.615850e-47
Msa0189040	Msa0267270	0.809537	1.801674e-50	-8.615850e-47
Msa0237210	Msa0267270	0.822005	2.985569e-53	-8.615850e-47
Msa0240900	Msa0267270	0.813774	2.159018e-51	-8.615850e-47
Msa0241140	Msa0267270	0.802096	6.596340e-49	-8.615850e-47
Msa0244640	Msa0267270	0.806671	7.346573e-50	-8.615850e-47
Msa0266180	Msa0267270	0.806888	6.608798e-50	-8.615850e-47
Msa0267270	Msa0274980	0.837543	4.885621e-57	-8.615850e-47
Msa0267270	Msa0278570	0.800127	1.667400e-48	-8.615850e-47
Msa0267270	Msa0315690	0.830597	2.684524e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0267270	MtrunA17_Chr7g0273081	87.077	325	11	5	1	316	14	316	0.0	558
Msa0267270	MtrunA17_Chr1g0191571	58.284	338	102	13	1	313	14	337	2.24e-109	321
Msa0267270	MtrunA17_Chr3g0132471	50.617	324	136	5	1	309	1	315	1.67e-102	303
Msa0267270	MtrunA17_Chr5g0426851	46.012	326	132	12	1	311	1	297	1.09e-82	252
Msa0267270	MtrunA17_Chr8g0366551	56.338	213	74	4	112	312	114	319	1.23e-72	227
Msa0267270	MtrunA17_Chr8g0345871	53.846	195	86	2	112	306	171	361	4.04e-57	188
Msa0267270	MtrunA17_Chr0c01g0489461	44.298	228	102	7	104	312	177	398	1.19e-49	170
Msa0267270	MtrunA17_Chr2g0287761	40.761	184	104	3	122	301	1	183	8.17e-35	125
Msa0267270	MtrunA17_Chr1g0158941	35.088	228	120	5	99	301	66	290	1.04e-31	120
Msa0267270	MtrunA17_Chr5g0400661	25.225	222	142	7	96	303	122	333	1.56e-13	70.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0267270	AT1G72210.1	46.154	338	139	5	1	313	1	320	4.12e-82	251
Msa0267270	AT1G22490.1	44.582	323	147	7	1	310	1	304	1.47e-74	231
Msa0267270	AT1G72210.2	45.779	308	124	5	1	283	1	290	4.87e-71	223
Msa0267270	AT1G22490.2	44.932	296	131	8	1	283	1	277	1.04e-63	204
Msa0267270	AT4G01460.1	48.309	207	93	3	112	309	105	306	4.15e-56	184
Msa0267270	AT4G01460.2	48.309	207	93	3	112	309	105	306	4.15e-56	184
Msa0267270	AT5G65320.1	47.980	198	97	3	118	309	98	295	1.65e-52	174
Msa0267270	AT2G46810.2	47.150	193	95	3	113	304	112	298	1.46e-51	172
Msa0267270	AT2G46810.3	47.150	193	95	3	113	304	172	358	1.08e-50	172
Msa0267270	AT2G46810.1	47.150	193	95	3	113	304	184	370	1.34e-50	172

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Find 47 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCCTATGCAATAACT+AGG	0.570827	2_2:+68776530	None:intergenic
AACAATGATTGTGGTGGTGG+TGG	0.531255	2_2:+68777690	None:intergenic
AACTAGGTACATCTTGAGAG+AGG	0.642765	2_2:+68776546	None:intergenic
AAGATGGTTTCTAGTTTGCA+TGG	0.504712	2_2:-68776997	Msa0267270:CDS
AAGCATAATTCTCTGTTTGT+TGG	0.375728	2_2:+68777748	None:intergenic
ACAATCATTGTTGCCACAAA+TGG	0.405629	2_2:-68777679	Msa0267270:CDS
ACATTGCTGTAGAACGCAAC+AGG	0.469202	2_2:-68777542	Msa0267270:CDS
ACCAAAACAGCTCTTGAAGA+TGG	0.460812	2_2:-68777013	Msa0267270:CDS
ACCATCTTCAAGAGCTGTTT+TGG	0.261447	2_2:+68777012	None:intergenic
ACCCTTTGGACGTAAGATTC+AGG	0.337296	2_2:+68777474	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCATAATTCTCTGTTTGT+TGG	+	chr2_2:68776676-68776695	None:intergenic	30.0%
CAAACAGAGAATTATGCTTA+TGG	-	chr2_2:68776677-68776696	Msa0267270:CDS	30.0%
GTGATCAAGCATCAATTATT+GGG	-	chr2_2:68777134-68777153	Msa0267270:CDS	30.0%
TGATCAAGCATCAATTATTG+GGG	-	chr2_2:68777135-68777154	Msa0267270:CDS	30.0%
GCTAAAAAGTGGTTAGAATT+TGG	+	chr2_2:68777568-68777587	None:intergenic	30.0%
TTCAAGAGAAAGCTAAAAAG+TGG	+	chr2_2:68777579-68777598	None:intergenic	30.0%
GTTGAATTCTTTCCAACATT+TGG	+	chr2_2:68777738-68777757	None:intergenic	30.0%
AAGCATAATTCTCTGTTTGT+TGG	+	chr2_2:68776676-68776695	None:intergenic	30.0%
CAAACAGAGAATTATGCTTA+TGG	-	chr2_2:68776677-68776696	Msa0267270:CDS	30.0%
GTGATCAAGCATCAATTATT+GGG	-	chr2_2:68777134-68777153	Msa0267270:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	68776484	68777959	68776484	ID=Msa0267270;Name=Msa0267270
chr2_2	mRNA	68776484	68777959	68776484	ID=Msa0267270-mRNA-1;Parent=Msa0267270;Name=Msa0267270-mRNA-1;_AED=0.07;_eAED=0.07;_QI=25\|1\|1\|1\|1\|1\|3\|173\|316
chr2_2	exon	68776484	68776761	68776484	ID=Msa0267270-mRNA-1:exon:21824;Parent=Msa0267270-mRNA-1
chr2_2	exon	68776924	68777310	68776924	ID=Msa0267270-mRNA-1:exon:21823;Parent=Msa0267270-mRNA-1
chr2_2	exon	68777476	68777959	68777476	ID=Msa0267270-mRNA-1:exon:21822;Parent=Msa0267270-mRNA-1
chr2_2	five_prime_UTR	68777935	68777959	68777935	ID=Msa0267270-mRNA-1:five_prime_utr;Parent=Msa0267270-mRNA-1
chr2_2	CDS	68777476	68777934	68777476	ID=Msa0267270-mRNA-1:cds;Parent=Msa0267270-mRNA-1
chr2_2	CDS	68776924	68777310	68776924	ID=Msa0267270-mRNA-1:cds;Parent=Msa0267270-mRNA-1
chr2_2	CDS	68776657	68776761	68776657	ID=Msa0267270-mRNA-1:cds;Parent=Msa0267270-mRNA-1
chr2_2	three_prime_UTR	68776484	68776656	68776484	ID=Msa0267270-mRNA-1:three_prime_utr;Parent=Msa0267270-mRNA-1

Gene Sequence

>Msa0267270

ATGGCACTAGAACCAACTCTACTATATCCACAAGACCCTTTCACCTATGGATTCAACAAAGACCATTACAATTACAACCTGTTAACAGATTCTGAAGCAAACTTTGACTACACCAACTTCAACCTTCAAAATCAAGAAGAACTTTCTACTTTTCTCATCAAGAACCAACAAACAGAGAATTATGCTTATGGAAATTGGAGTAACAATTGTTCATCTTCTTCACCACCACCACCACAATCATTGTTGCCACAAATGGATGAAGTGTCAAATCCATCTTTAGATAGTTCAATTTCAACTCGTTCTCGTTCCAAGAAACGCAGAGTCAAAACAAGTAAGAATAAAGAAGAAATTGAGAATCAGAGAATGACTCACATTGCTGTAGAACGCAACAGGAGAAAACAAATGAATGAGTATCTCTCTGTTCTTAGATCTCTCATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCAATTATTGGGGGTGCTATTAACTTTGTTAAGAAGCTTGAGCAGAAGCTACAATTTCTTGGTGGTGTTCAGAAACAAAAAGAGGAAAATAAAAACAAGCCCTTTTCTGAATTTTTCACCTTTCCACAATACTCAACAAGTGACAGTGTGTGTGAGAGTTCTGAGACAAAAATGGGTGGTGAGGTTCAATCTCGCAATATTGCTGATATTGAAGTGACAATGGTTGAAAGCCATGCAAATCTCAAAGTAAGAACAAAGAAAAGACCAAAACAGCTCTTGAAGATGGTTTCTAGTTTGCATGGATTGTGTCTCACAATCTTGCACCTTAATGTCACTACAGCTGATGAATTTGTCTTCTATTCTATCAGCGTTAAGGTTGAAGATGATTGCAAGCTTGGATCAGTGGATGAGATAGCTGCAGCTGTATACCAAATGTTGGAAAGAATTCAACAAGAGTCATCAATCAATATATTGAATTAA

Protein sequence

>Msa0267270

MALEPTLLYPQDPFTYGFNKDHYNYNLLTDSEANFDYTNFNLQNQEELSTFLIKNQQTENYAYGNWSNNCSSSSPPPPQSLLPQMDEVSNPSLDSSISTRSRSKKRRVKTSKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKKLEQKLQFLGGVQKQKEENKNKPFSEFFTFPQYSTSDSVCESSETKMGGEVQSRNIADIEVTMVESHANLKVRTKKRPKQLLKMVSSLHGLCLTILHLNVTTADEFVFYSISVKVEDDCKLGSVDEIAAAVYQMLERIQQESSINILN*