Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0267270 | XP_003626318.2 | 87.077 | 325 | 11 | 5 | 1 | 316 | 14 | 316 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0267270 | sp|Q9C7T4|BH096_ARATH | 46.154 | 338 | 139 | 5 | 1 | 313 | 1 | 320 | 4.05e-81 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0267270 | G7KZP3 | 87.077 | 325 | 11 | 5 | 1 | 316 | 14 | 316 | 0.0 | 558 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0267270 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0267270 | 0.810271 | 1.252563e-50 | -8.615850e-47 |
| Msa0189040 | Msa0267270 | 0.809537 | 1.801674e-50 | -8.615850e-47 |
| Msa0237210 | Msa0267270 | 0.822005 | 2.985569e-53 | -8.615850e-47 |
| Msa0240900 | Msa0267270 | 0.813774 | 2.159018e-51 | -8.615850e-47 |
| Msa0241140 | Msa0267270 | 0.802096 | 6.596340e-49 | -8.615850e-47 |
| Msa0244640 | Msa0267270 | 0.806671 | 7.346573e-50 | -8.615850e-47 |
| Msa0266180 | Msa0267270 | 0.806888 | 6.608798e-50 | -8.615850e-47 |
| Msa0267270 | Msa0274980 | 0.837543 | 4.885621e-57 | -8.615850e-47 |
| Msa0267270 | Msa0278570 | 0.800127 | 1.667400e-48 | -8.615850e-47 |
| Msa0267270 | Msa0315690 | 0.830597 | 2.684524e-55 | -8.615850e-47 |
| Msa0267270 | Msa0317970 | 0.811791 | 5.866683e-51 | -8.615850e-47 |
| Msa0267270 | Msa0321620 | 0.822102 | 2.834144e-53 | -8.615850e-47 |
| Msa0267270 | Msa0337700 | 0.800431 | 1.445837e-48 | -8.615850e-47 |
| Msa0267270 | Msa0341690 | 0.804970 | 1.672380e-49 | -8.615850e-47 |
| Msa0267270 | Msa0367870 | 0.803213 | 3.880969e-49 | -8.615850e-47 |
| Msa0267270 | Msa0428920 | 0.821482 | 3.944544e-53 | -8.615850e-47 |
| Msa0267270 | Msa0583360 | -0.813991 | 1.934016e-51 | -8.615850e-47 |
| Msa0267270 | Msa0795870 | 0.802639 | 5.098605e-49 | -8.615850e-47 |
| Msa0267270 | Msa0833530 | 0.817688 | 2.896277e-52 | -8.615850e-47 |
| Msa0267270 | Msa1034500 | 0.813123 | 3.001033e-51 | -8.615850e-47 |
| Msa0267270 | Msa1039020 | 0.844765 | 6.174380e-59 | -8.615850e-47 |
| Msa0267270 | Msa1089450 | 0.818497 | 1.901052e-52 | -8.615850e-47 |
| Msa0267270 | Msa1145810 | 0.807764 | 4.310209e-50 | -8.615850e-47 |
| Msa0267270 | Msa1155170 | -0.806883 | 6.626983e-50 | -8.615850e-47 |
| Msa0267270 | Msa1164960 | 0.875360 | 3.275635e-68 | -8.615850e-47 |
| Msa0267270 | Msa1225860 | -0.814932 | 1.197366e-51 | -8.615850e-47 |
| Msa0267270 | Msa1228200 | 0.823087 | 1.672853e-53 | -8.615850e-47 |
| Msa0267270 | Msa1232700 | 0.809589 | 1.755729e-50 | -8.615850e-47 |
| Msa0267270 | Msa1297230 | 0.813775 | 2.157816e-51 | -8.615850e-47 |
| Msa0267270 | Msa1307560 | 0.819092 | 1.392692e-52 | -8.615850e-47 |
| Msa0267270 | Msa1393880 | 0.883376 | 4.729148e-71 | -8.615850e-47 |
| Msa0267270 | Msa1425880 | 0.829465 | 5.070979e-55 | -8.615850e-47 |
| Msa0267270 | Msa1440310 | 0.826630 | 2.441775e-54 | -8.615850e-47 |
| Msa0267270 | Msa1444510 | 0.800936 | 1.140814e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0267270 | MtrunA17_Chr7g0273081 | 87.077 | 325 | 11 | 5 | 1 | 316 | 14 | 316 | 0.0 | 558 |
| Msa0267270 | MtrunA17_Chr1g0191571 | 58.284 | 338 | 102 | 13 | 1 | 313 | 14 | 337 | 2.24e-109 | 321 |
| Msa0267270 | MtrunA17_Chr3g0132471 | 50.617 | 324 | 136 | 5 | 1 | 309 | 1 | 315 | 1.67e-102 | 303 |
| Msa0267270 | MtrunA17_Chr5g0426851 | 46.012 | 326 | 132 | 12 | 1 | 311 | 1 | 297 | 1.09e-82 | 252 |
| Msa0267270 | MtrunA17_Chr8g0366551 | 56.338 | 213 | 74 | 4 | 112 | 312 | 114 | 319 | 1.23e-72 | 227 |
| Msa0267270 | MtrunA17_Chr8g0345871 | 53.846 | 195 | 86 | 2 | 112 | 306 | 171 | 361 | 4.04e-57 | 188 |
| Msa0267270 | MtrunA17_Chr0c01g0489461 | 44.298 | 228 | 102 | 7 | 104 | 312 | 177 | 398 | 1.19e-49 | 170 |
| Msa0267270 | MtrunA17_Chr2g0287761 | 40.761 | 184 | 104 | 3 | 122 | 301 | 1 | 183 | 8.17e-35 | 125 |
| Msa0267270 | MtrunA17_Chr1g0158941 | 35.088 | 228 | 120 | 5 | 99 | 301 | 66 | 290 | 1.04e-31 | 120 |
| Msa0267270 | MtrunA17_Chr5g0400661 | 25.225 | 222 | 142 | 7 | 96 | 303 | 122 | 333 | 1.56e-13 | 70.1 |
| Msa0267270 | MtrunA17_Chr3g0126361 | 36.885 | 122 | 54 | 3 | 36 | 153 | 30 | 132 | 1.00e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0267270 | AT1G72210.1 | 46.154 | 338 | 139 | 5 | 1 | 313 | 1 | 320 | 4.12e-82 | 251 |
| Msa0267270 | AT1G22490.1 | 44.582 | 323 | 147 | 7 | 1 | 310 | 1 | 304 | 1.47e-74 | 231 |
| Msa0267270 | AT1G72210.2 | 45.779 | 308 | 124 | 5 | 1 | 283 | 1 | 290 | 4.87e-71 | 223 |
| Msa0267270 | AT1G22490.2 | 44.932 | 296 | 131 | 8 | 1 | 283 | 1 | 277 | 1.04e-63 | 204 |
| Msa0267270 | AT4G01460.1 | 48.309 | 207 | 93 | 3 | 112 | 309 | 105 | 306 | 4.15e-56 | 184 |
| Msa0267270 | AT4G01460.2 | 48.309 | 207 | 93 | 3 | 112 | 309 | 105 | 306 | 4.15e-56 | 184 |
| Msa0267270 | AT5G65320.1 | 47.980 | 198 | 97 | 3 | 118 | 309 | 98 | 295 | 1.65e-52 | 174 |
| Msa0267270 | AT2G46810.2 | 47.150 | 193 | 95 | 3 | 113 | 304 | 112 | 298 | 1.46e-51 | 172 |
| Msa0267270 | AT2G46810.3 | 47.150 | 193 | 95 | 3 | 113 | 304 | 172 | 358 | 1.08e-50 | 172 |
| Msa0267270 | AT2G46810.1 | 47.150 | 193 | 95 | 3 | 113 | 304 | 184 | 370 | 1.34e-50 | 172 |
| Msa0267270 | AT5G46690.1 | 44.828 | 232 | 87 | 5 | 112 | 309 | 78 | 302 | 1.02e-49 | 168 |
| Msa0267270 | AT3G24140.1 | 41.850 | 227 | 115 | 3 | 102 | 312 | 177 | 402 | 8.26e-49 | 168 |
| Msa0267270 | AT3G24140.2 | 41.410 | 227 | 116 | 3 | 102 | 312 | 177 | 402 | 2.38e-48 | 167 |
| Msa0267270 | AT3G61950.2 | 46.154 | 195 | 97 | 2 | 111 | 304 | 116 | 303 | 1.00e-47 | 162 |
| Msa0267270 | AT3G61950.1 | 46.154 | 195 | 97 | 2 | 111 | 304 | 167 | 354 | 7.74e-47 | 162 |
| Msa0267270 | AT2G46810.4 | 41.629 | 221 | 94 | 4 | 113 | 304 | 112 | 326 | 8.53e-46 | 158 |
| Msa0267270 | AT5G65320.2 | 49.708 | 171 | 81 | 2 | 118 | 283 | 98 | 268 | 1.15e-45 | 156 |
| Msa0267270 | AT3G61950.6 | 46.875 | 160 | 78 | 1 | 111 | 270 | 116 | 268 | 4.37e-40 | 142 |
| Msa0267270 | AT3G61950.3 | 46.875 | 160 | 78 | 1 | 111 | 270 | 167 | 319 | 2.25e-39 | 142 |
| Msa0267270 | AT5G46690.2 | 43.689 | 206 | 75 | 5 | 112 | 283 | 78 | 276 | 1.57e-38 | 138 |
| Msa0267270 | AT3G06120.1 | 38.095 | 189 | 105 | 3 | 122 | 299 | 1 | 188 | 3.74e-32 | 119 |
| Msa0267270 | AT5G53210.2 | 61.538 | 65 | 25 | 0 | 120 | 184 | 100 | 164 | 2.52e-20 | 90.5 |
| Msa0267270 | AT5G53210.1 | 61.538 | 65 | 25 | 0 | 120 | 184 | 100 | 164 | 3.43e-20 | 90.1 |
| Msa0267270 | AT3G61950.4 | 72.093 | 43 | 12 | 0 | 111 | 153 | 167 | 209 | 4.31e-14 | 70.5 |
| Msa0267270 | AT3G61950.5 | 72.093 | 43 | 12 | 0 | 111 | 153 | 167 | 209 | 4.31e-14 | 70.5 |
Find 47 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATTATGCTTATGGAAAT+TGG | 0.223168 | 2_2:-68777737 | Msa0267270:CDS |
| ACCATCTTCAAGAGCTGTTT+TGG | 0.261447 | 2_2:+68777012 | None:intergenic |
| GGTGATCAAGCATCAATTAT+TGG | 0.265730 | 2_2:-68777288 | Msa0267270:CDS |
| GTTGAATTCTTTCCAACATT+TGG | 0.301786 | 2_2:+68776686 | None:intergenic |
| GAGCAGAAGCTACAATTTCT+TGG | 0.311027 | 2_2:-68777237 | Msa0267270:CDS |
| GTGATCAAGCATCAATTATT+GGG | 0.314095 | 2_2:-68777287 | Msa0267270:CDS |
| CATCAGCTGTAGTGACATTA+AGG | 0.320979 | 2_2:+68776953 | None:intergenic |
| ACCCTTTGGACGTAAGATTC+AGG | 0.337296 | 2_2:+68777474 | None:intergenic |
| TTGCTTCAGAATCTGTTAAC+AGG | 0.346873 | 2_2:+68777835 | None:intergenic |
| CAAACAGAGAATTATGCTTA+TGG | 0.362320 | 2_2:-68777744 | Msa0267270:CDS |
| CTTCTATTCTATCAGCGTTA+AGG | 0.373348 | 2_2:-68776923 | Msa0267270:intron |
| AAGCATAATTCTCTGTTTGT+TGG | 0.375728 | 2_2:+68777748 | None:intergenic |
| GTTGAAGATGATTGCAAGCT+TGG | 0.385709 | 2_2:-68776739 | Msa0267270:CDS |
| ACAATCATTGTTGCCACAAA+TGG | 0.405629 | 2_2:-68777679 | Msa0267270:CDS |
| ACTTTAAGATCTCTTGATGA+TGG | 0.419411 | 2_2:-68776597 | Msa0267270:three_prime_UTR |
| CCACAAGACCCTTTCACCTA+TGG | 0.431613 | 2_2:-68777885 | Msa0267270:CDS |
| TTAACAGGTTGTAATTGTAA+TGG | 0.451750 | 2_2:+68777850 | None:intergenic |
| ACCAAAACAGCTCTTGAAGA+TGG | 0.460812 | 2_2:-68777013 | Msa0267270:CDS |
| ACATTGCTGTAGAACGCAAC+AGG | 0.469202 | 2_2:-68777542 | Msa0267270:CDS |
| TTCTTACTTTGAGATTTGCA+TGG | 0.473698 | 2_2:+68777046 | None:intergenic |
| GAAATTGAACTATCTAAAGA+TGG | 0.481389 | 2_2:+68777642 | None:intergenic |
| TGTTGAATCCATAGGTGAAA+GGG | 0.493303 | 2_2:+68777877 | None:intergenic |
| AAGATGGTTTCTAGTTTGCA+TGG | 0.504712 | 2_2:-68776997 | Msa0267270:CDS |
| GGCAACAATGATTGTGGTGG+TGG | 0.505665 | 2_2:+68777687 | None:intergenic |
| TTTGACACTTCATCCATTTG+TGG | 0.511454 | 2_2:+68777666 | None:intergenic |
| TGCCTGAATCTTACGTCCAA+AGG | 0.512531 | 2_2:-68777476 | Msa0267270:CDS |
| GCCTGAATCTTACGTCCAAA+GGG | 0.523230 | 2_2:-68777475 | Msa0267270:intron |
| TCTTGTGGATATAGTAGAGT+TGG | 0.525531 | 2_2:+68777900 | None:intergenic |
| AACAATGATTGTGGTGGTGG+TGG | 0.531255 | 2_2:+68777690 | None:intergenic |
| CTGTCACTTGTTGAGTATTG+TGG | 0.536473 | 2_2:+68777153 | None:intergenic |
| TTGTTGAATCCATAGGTGAA+AGG | 0.539793 | 2_2:+68777876 | None:intergenic |
| TAGAGTTGGTTCTAGTGCCA+TGG | 0.564316 | 2_2:+68777914 | None:intergenic |
| CCATAGGTGAAAGGGTCTTG+TGG | 0.567251 | 2_2:+68777885 | None:intergenic |
| AAACAGCCTATGCAATAACT+AGG | 0.570827 | 2_2:+68776530 | None:intergenic |
| ATGGTCTTTGTTGAATCCAT+AGG | 0.572517 | 2_2:+68777869 | None:intergenic |
| GATGTACCTAGTTATTGCAT+AGG | 0.579097 | 2_2:-68776536 | Msa0267270:three_prime_UTR |
| TGCAGCTGTATACCAAATGT+TGG | 0.583918 | 2_2:-68776698 | Msa0267270:CDS |
| TGATTGCAAGCTTGGATCAG+TGG | 0.587540 | 2_2:-68776731 | Msa0267270:CDS |
| CAGAAGCTACAATTTCTTGG+TGG | 0.593039 | 2_2:-68777234 | Msa0267270:CDS |
| TGATCAAGCATCAATTATTG+GGG | 0.599410 | 2_2:-68777286 | Msa0267270:CDS |
| TAGAGAAAGAGAGAGATCCA+TGG | 0.615999 | 2_2:-68777931 | Msa0267270:exon |
| AACTAGGTACATCTTGAGAG+AGG | 0.642765 | 2_2:+68776546 | None:intergenic |
| TGCTGATATTGAAGTGACAA+TGG | 0.646131 | 2_2:-68777076 | Msa0267270:CDS |
| ATTTGTGGCAACAATGATTG+TGG | 0.649128 | 2_2:+68777681 | None:intergenic |
| ACTTGTTGAGTATTGTGGAA+AGG | 0.653314 | 2_2:+68777158 | None:intergenic |
| TGTGGCAACAATGATTGTGG+TGG | 0.680500 | 2_2:+68777684 | None:intergenic |
| GATCAAGCATCAATTATTGG+GGG | 0.757063 | 2_2:-68777285 | Msa0267270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTATTTTGTAATTTGT+AGG | - | chr2_2:68777660-68777679 | Msa0267270:CDS | 10.0% |
| !!! | AATTTTATTTTGTAATTTGT+AGG | - | chr2_2:68777660-68777679 | Msa0267270:CDS | 10.0% |
| !!! | TCATTTTTAAATTGAAATTG+CGG | + | chr2_2:68777085-68777104 | None:intergenic | 15.0% |
| !! | GATCTTAAAGTTAAAAAAAA+GGG | + | chr2_2:68777815-68777834 | None:intergenic | 15.0% |
| !! | AGATCTTAAAGTTAAAAAAA+AGG | + | chr2_2:68777816-68777835 | None:intergenic | 15.0% |
| !!! | TCTTATATTATTTGATTTTC+TGG | - | chr2_2:68777939-68777958 | Msa0267270:five_prime_UTR | 15.0% |
| !!! | TCATTTTTAAATTGAAATTG+CGG | + | chr2_2:68777085-68777104 | None:intergenic | 15.0% |
| !! | GATCTTAAAGTTAAAAAAAA+GGG | + | chr2_2:68777815-68777834 | None:intergenic | 15.0% |
| !! | AGATCTTAAAGTTAAAAAAA+AGG | + | chr2_2:68777816-68777835 | None:intergenic | 15.0% |
| !!! | CTTCTATTACTTTTAAATTG+TGG | - | chr2_2:68776971-68776990 | Msa0267270:CDS | 20.0% |
| !!! | TTTTGATTGATGAATTTTTC+AGG | - | chr2_2:68777111-68777130 | Msa0267270:CDS | 20.0% |
| !!! | TTTGATTGATGAATTTTTCA+GGG | - | chr2_2:68777112-68777131 | Msa0267270:CDS | 20.0% |
| !! | AAGAAAAAAAAAACATGACA+GGG | + | chr2_2:68777538-68777557 | None:intergenic | 20.0% |
| !! | TTAAGTGCTTACAATAATTT+AGG | + | chr2_2:68777613-68777632 | None:intergenic | 20.0% |
| !!! | CTTCTATTACTTTTAAATTG+TGG | - | chr2_2:68776971-68776990 | Msa0267270:CDS | 20.0% |
| !!! | TTTTGATTGATGAATTTTTC+AGG | - | chr2_2:68777111-68777130 | Msa0267270:CDS | 20.0% |
| !!! | TTTGATTGATGAATTTTTCA+GGG | - | chr2_2:68777112-68777131 | Msa0267270:CDS | 20.0% |
| !! | AAGAAAAAAAAAACATGACA+GGG | + | chr2_2:68777538-68777557 | None:intergenic | 20.0% |
| !! | TTAAGTGCTTACAATAATTT+AGG | + | chr2_2:68777613-68777632 | None:intergenic | 20.0% |
| ! | TTAACAGGTTGTAATTGTAA+TGG | + | chr2_2:68776574-68776593 | None:intergenic | 25.0% |
| !! | AAAGTTCTTCTTGATTTTGA+AGG | + | chr2_2:68776634-68776653 | None:intergenic | 25.0% |
| ! | AGAATTATGCTTATGGAAAT+TGG | - | chr2_2:68776684-68776703 | Msa0267270:CDS | 25.0% |
| ! | GAAATTGAACTATCTAAAGA+TGG | + | chr2_2:68776782-68776801 | None:intergenic | 25.0% |
| ! | AAGGTGAAAAATTCAGAAAA+GGG | + | chr2_2:68777247-68777266 | None:intergenic | 25.0% |
| ! | AAAGGTGAAAAATTCAGAAA+AGG | + | chr2_2:68777248-68777267 | None:intergenic | 25.0% |
| ! | GAAGAAAAAAAAAACATGAC+AGG | + | chr2_2:68777539-68777558 | None:intergenic | 25.0% |
| ! | TTAACAGGTTGTAATTGTAA+TGG | + | chr2_2:68776574-68776593 | None:intergenic | 25.0% |
| !! | AAAGTTCTTCTTGATTTTGA+AGG | + | chr2_2:68776634-68776653 | None:intergenic | 25.0% |
| ! | AGAATTATGCTTATGGAAAT+TGG | - | chr2_2:68776684-68776703 | Msa0267270:CDS | 25.0% |
| ! | GAAATTGAACTATCTAAAGA+TGG | + | chr2_2:68776782-68776801 | None:intergenic | 25.0% |
| ! | AAGGTGAAAAATTCAGAAAA+GGG | + | chr2_2:68777247-68777266 | None:intergenic | 25.0% |
| ! | AAAGGTGAAAAATTCAGAAA+AGG | + | chr2_2:68777248-68777267 | None:intergenic | 25.0% |
| ! | GAAGAAAAAAAAAACATGAC+AGG | + | chr2_2:68777539-68777558 | None:intergenic | 25.0% |
| !! | TTGATTTTGAAGGTTGAAGT+TGG | + | chr2_2:68776624-68776643 | None:intergenic | 30.0% |
| AAGCATAATTCTCTGTTTGT+TGG | + | chr2_2:68776676-68776695 | None:intergenic | 30.0% | |
| CAAACAGAGAATTATGCTTA+TGG | - | chr2_2:68776677-68776696 | Msa0267270:CDS | 30.0% | |
| !! | AAAGTAATAGAAGTACCCTT+TGG | + | chr2_2:68776964-68776983 | None:intergenic | 30.0% |
| ! | TGCATTTTGCCTCAATATAA+AGG | + | chr2_2:68777019-68777038 | None:intergenic | 30.0% |
| GTGATCAAGCATCAATTATT+GGG | - | chr2_2:68777134-68777153 | Msa0267270:CDS | 30.0% | |
| TGATCAAGCATCAATTATTG+GGG | - | chr2_2:68777135-68777154 | Msa0267270:CDS | 30.0% | |
| !! | TTCTTACTTTGAGATTTGCA+TGG | + | chr2_2:68777378-68777397 | None:intergenic | 30.0% |
| GCTAAAAAGTGGTTAGAATT+TGG | + | chr2_2:68777568-68777587 | None:intergenic | 30.0% | |
| TTCAAGAGAAAGCTAAAAAG+TGG | + | chr2_2:68777579-68777598 | None:intergenic | 30.0% | |
| GTTGAATTCTTTCCAACATT+TGG | + | chr2_2:68777738-68777757 | None:intergenic | 30.0% | |
| !! | ACTTTAAGATCTCTTGATGA+TGG | - | chr2_2:68777824-68777843 | Msa0267270:CDS | 30.0% |
| !! | TTGATTTTGAAGGTTGAAGT+TGG | + | chr2_2:68776624-68776643 | None:intergenic | 30.0% |
| AAGCATAATTCTCTGTTTGT+TGG | + | chr2_2:68776676-68776695 | None:intergenic | 30.0% | |
| CAAACAGAGAATTATGCTTA+TGG | - | chr2_2:68776677-68776696 | Msa0267270:CDS | 30.0% | |
| !! | AAAGTAATAGAAGTACCCTT+TGG | + | chr2_2:68776964-68776983 | None:intergenic | 30.0% |
| ! | TGCATTTTGCCTCAATATAA+AGG | + | chr2_2:68777019-68777038 | None:intergenic | 30.0% |
| GTGATCAAGCATCAATTATT+GGG | - | chr2_2:68777134-68777153 | Msa0267270:CDS | 30.0% | |
| TGATCAAGCATCAATTATTG+GGG | - | chr2_2:68777135-68777154 | Msa0267270:CDS | 30.0% | |
| !! | TTCTTACTTTGAGATTTGCA+TGG | + | chr2_2:68777378-68777397 | None:intergenic | 30.0% |
| GCTAAAAAGTGGTTAGAATT+TGG | + | chr2_2:68777568-68777587 | None:intergenic | 30.0% | |
| TTCAAGAGAAAGCTAAAAAG+TGG | + | chr2_2:68777579-68777598 | None:intergenic | 30.0% | |
| GTTGAATTCTTTCCAACATT+TGG | + | chr2_2:68777738-68777757 | None:intergenic | 30.0% | |
| !! | ACTTTAAGATCTCTTGATGA+TGG | - | chr2_2:68777824-68777843 | Msa0267270:CDS | 30.0% |
| TCTTGTGGATATAGTAGAGT+TGG | + | chr2_2:68776524-68776543 | None:intergenic | 35.0% | |
| TGTTGAATCCATAGGTGAAA+GGG | + | chr2_2:68776547-68776566 | None:intergenic | 35.0% | |
| TTGTTGAATCCATAGGTGAA+AGG | + | chr2_2:68776548-68776567 | None:intergenic | 35.0% | |
| ATGGTCTTTGTTGAATCCAT+AGG | + | chr2_2:68776555-68776574 | None:intergenic | 35.0% | |
| TTGCTTCAGAATCTGTTAAC+AGG | + | chr2_2:68776589-68776608 | None:intergenic | 35.0% | |
| ATTTGTGGCAACAATGATTG+TGG | + | chr2_2:68776743-68776762 | None:intergenic | 35.0% | |
| ACAATCATTGTTGCCACAAA+TGG | - | chr2_2:68776742-68776761 | Msa0267270:CDS | 35.0% | |
| TTTGACACTTCATCCATTTG+TGG | + | chr2_2:68776758-68776777 | None:intergenic | 35.0% | |
| TGCTGCAAACCTTTATATTG+AGG | - | chr2_2:68777007-68777026 | Msa0267270:CDS | 35.0% | |
| GGTGATCAAGCATCAATTAT+TGG | - | chr2_2:68777133-68777152 | Msa0267270:CDS | 35.0% | |
| GATCAAGCATCAATTATTGG+GGG | - | chr2_2:68777136-68777155 | Msa0267270:CDS | 35.0% | |
| TGGTGTTCAGAAACAAAAAG+AGG | - | chr2_2:68777207-68777226 | Msa0267270:CDS | 35.0% | |
| ! | ACTTGTTGAGTATTGTGGAA+AGG | + | chr2_2:68777266-68777285 | None:intergenic | 35.0% |
| !! | TGAGAGTTCTGAGACAAAAA+TGG | - | chr2_2:68777297-68777316 | Msa0267270:intron | 35.0% |
| !! | GAGAGTTCTGAGACAAAAAT+GGG | - | chr2_2:68777298-68777317 | Msa0267270:intron | 35.0% |
| TGCTGATATTGAAGTGACAA+TGG | - | chr2_2:68777345-68777364 | Msa0267270:intron | 35.0% | |
| !! | AAGATGGTTTCTAGTTTGCA+TGG | - | chr2_2:68777424-68777443 | Msa0267270:intron | 35.0% |
| CTTCTATTCTATCAGCGTTA+AGG | - | chr2_2:68777498-68777517 | Msa0267270:CDS | 35.0% | |
| AGTGGTTAGAATTTGGAAAG+TGG | + | chr2_2:68777561-68777580 | None:intergenic | 35.0% | |
| GATGTACCTAGTTATTGCAT+AGG | - | chr2_2:68777885-68777904 | Msa0267270:CDS | 35.0% | |
| AAACAGCCTATGCAATAACT+AGG | + | chr2_2:68777894-68777913 | None:intergenic | 35.0% | |
| TCTTGTGGATATAGTAGAGT+TGG | + | chr2_2:68776524-68776543 | None:intergenic | 35.0% | |
| TGTTGAATCCATAGGTGAAA+GGG | + | chr2_2:68776547-68776566 | None:intergenic | 35.0% | |
| TTGTTGAATCCATAGGTGAA+AGG | + | chr2_2:68776548-68776567 | None:intergenic | 35.0% | |
| ATGGTCTTTGTTGAATCCAT+AGG | + | chr2_2:68776555-68776574 | None:intergenic | 35.0% | |
| TTGCTTCAGAATCTGTTAAC+AGG | + | chr2_2:68776589-68776608 | None:intergenic | 35.0% | |
| ATTTGTGGCAACAATGATTG+TGG | + | chr2_2:68776743-68776762 | None:intergenic | 35.0% | |
| ACAATCATTGTTGCCACAAA+TGG | - | chr2_2:68776742-68776761 | Msa0267270:CDS | 35.0% | |
| TTTGACACTTCATCCATTTG+TGG | + | chr2_2:68776758-68776777 | None:intergenic | 35.0% | |
| TGCTGCAAACCTTTATATTG+AGG | - | chr2_2:68777007-68777026 | Msa0267270:CDS | 35.0% | |
| GGTGATCAAGCATCAATTAT+TGG | - | chr2_2:68777133-68777152 | Msa0267270:CDS | 35.0% | |
| GATCAAGCATCAATTATTGG+GGG | - | chr2_2:68777136-68777155 | Msa0267270:CDS | 35.0% | |
| TGGTGTTCAGAAACAAAAAG+AGG | - | chr2_2:68777207-68777226 | Msa0267270:CDS | 35.0% | |
| ! | ACTTGTTGAGTATTGTGGAA+AGG | + | chr2_2:68777266-68777285 | None:intergenic | 35.0% |
| !! | TGAGAGTTCTGAGACAAAAA+TGG | - | chr2_2:68777297-68777316 | Msa0267270:intron | 35.0% |
| !! | GAGAGTTCTGAGACAAAAAT+GGG | - | chr2_2:68777298-68777317 | Msa0267270:intron | 35.0% |
| TGCTGATATTGAAGTGACAA+TGG | - | chr2_2:68777345-68777364 | Msa0267270:intron | 35.0% | |
| !! | AAGATGGTTTCTAGTTTGCA+TGG | - | chr2_2:68777424-68777443 | Msa0267270:intron | 35.0% |
| CTTCTATTCTATCAGCGTTA+AGG | - | chr2_2:68777498-68777517 | Msa0267270:CDS | 35.0% | |
| AGTGGTTAGAATTTGGAAAG+TGG | + | chr2_2:68777561-68777580 | None:intergenic | 35.0% | |
| GATGTACCTAGTTATTGCAT+AGG | - | chr2_2:68777885-68777904 | Msa0267270:CDS | 35.0% | |
| AAACAGCCTATGCAATAACT+AGG | + | chr2_2:68777894-68777913 | None:intergenic | 35.0% | |
| TAGAGAAAGAGAGAGATCCA+TGG | - | chr2_2:68776490-68776509 | Msa0267270:three_prime_UTR | 40.0% | |
| !!! | TGTTTTGACTCTGCGTTTCT+TGG | + | chr2_2:68776819-68776838 | None:intergenic | 40.0% |
| GAGGCAAAATGCAGAAATTG+CGG | - | chr2_2:68777026-68777045 | Msa0267270:CDS | 40.0% | |
| CTGCAAGAGAAACGATTCTA+AGG | + | chr2_2:68777062-68777081 | None:intergenic | 40.0% | |
| GAGCAGAAGCTACAATTTCT+TGG | - | chr2_2:68777184-68777203 | Msa0267270:CDS | 40.0% | |
| CAGAAGCTACAATTTCTTGG+TGG | - | chr2_2:68777187-68777206 | Msa0267270:CDS | 40.0% | |
| ! | CTGTCACTTGTTGAGTATTG+TGG | + | chr2_2:68777271-68777290 | None:intergenic | 40.0% |
| !! | AGTTCTGAGACAAAAATGGG+TGG | - | chr2_2:68777301-68777320 | Msa0267270:intron | 40.0% |
| ACCAAAACAGCTCTTGAAGA+TGG | - | chr2_2:68777408-68777427 | Msa0267270:intron | 40.0% | |
| ! | ACCATCTTCAAGAGCTGTTT+TGG | + | chr2_2:68777412-68777431 | None:intergenic | 40.0% |
| CATCAGCTGTAGTGACATTA+AGG | + | chr2_2:68777471-68777490 | None:intergenic | 40.0% | |
| AGCGTTAAGGTAATTGTCTG+TGG | - | chr2_2:68777511-68777530 | Msa0267270:CDS | 40.0% | |
| GTTGAAGATGATTGCAAGCT+TGG | - | chr2_2:68777682-68777701 | Msa0267270:CDS | 40.0% | |
| TGCAGCTGTATACCAAATGT+TGG | - | chr2_2:68777723-68777742 | Msa0267270:CDS | 40.0% | |
| AACTAGGTACATCTTGAGAG+AGG | + | chr2_2:68777878-68777897 | None:intergenic | 40.0% | |
| TAGAGAAAGAGAGAGATCCA+TGG | - | chr2_2:68776490-68776509 | Msa0267270:three_prime_UTR | 40.0% | |
| !!! | TGTTTTGACTCTGCGTTTCT+TGG | + | chr2_2:68776819-68776838 | None:intergenic | 40.0% |
| GAGGCAAAATGCAGAAATTG+CGG | - | chr2_2:68777026-68777045 | Msa0267270:CDS | 40.0% | |
| CTGCAAGAGAAACGATTCTA+AGG | + | chr2_2:68777062-68777081 | None:intergenic | 40.0% | |
| GAGCAGAAGCTACAATTTCT+TGG | - | chr2_2:68777184-68777203 | Msa0267270:CDS | 40.0% | |
| CAGAAGCTACAATTTCTTGG+TGG | - | chr2_2:68777187-68777206 | Msa0267270:CDS | 40.0% | |
| ! | CTGTCACTTGTTGAGTATTG+TGG | + | chr2_2:68777271-68777290 | None:intergenic | 40.0% |
| !! | AGTTCTGAGACAAAAATGGG+TGG | - | chr2_2:68777301-68777320 | Msa0267270:intron | 40.0% |
| ACCAAAACAGCTCTTGAAGA+TGG | - | chr2_2:68777408-68777427 | Msa0267270:intron | 40.0% | |
| ! | ACCATCTTCAAGAGCTGTTT+TGG | + | chr2_2:68777412-68777431 | None:intergenic | 40.0% |
| CATCAGCTGTAGTGACATTA+AGG | + | chr2_2:68777471-68777490 | None:intergenic | 40.0% | |
| AGCGTTAAGGTAATTGTCTG+TGG | - | chr2_2:68777511-68777530 | Msa0267270:CDS | 40.0% | |
| GTTGAAGATGATTGCAAGCT+TGG | - | chr2_2:68777682-68777701 | Msa0267270:CDS | 40.0% | |
| TGCAGCTGTATACCAAATGT+TGG | - | chr2_2:68777723-68777742 | Msa0267270:CDS | 40.0% | |
| AACTAGGTACATCTTGAGAG+AGG | + | chr2_2:68777878-68777897 | None:intergenic | 40.0% | |
| !! | TAGAGTTGGTTCTAGTGCCA+TGG | + | chr2_2:68776510-68776529 | None:intergenic | 45.0% |
| !! | AACAATGATTGTGGTGGTGG+TGG | + | chr2_2:68776734-68776753 | None:intergenic | 45.0% |
| TGTGGCAACAATGATTGTGG+TGG | + | chr2_2:68776740-68776759 | None:intergenic | 45.0% | |
| ACATTGCTGTAGAACGCAAC+AGG | - | chr2_2:68776879-68776898 | Msa0267270:intron | 45.0% | |
| TGCCTGAATCTTACGTCCAA+AGG | - | chr2_2:68776945-68776964 | Msa0267270:CDS | 45.0% | |
| GCCTGAATCTTACGTCCAAA+GGG | - | chr2_2:68776946-68776965 | Msa0267270:CDS | 45.0% | |
| ACCCTTTGGACGTAAGATTC+AGG | + | chr2_2:68776950-68776969 | None:intergenic | 45.0% | |
| TGAGACAAAAATGGGTGGTG+AGG | - | chr2_2:68777306-68777325 | Msa0267270:intron | 45.0% | |
| TGATTGCAAGCTTGGATCAG+TGG | - | chr2_2:68777690-68777709 | Msa0267270:CDS | 45.0% | |
| !! | TAGAGTTGGTTCTAGTGCCA+TGG | + | chr2_2:68776510-68776529 | None:intergenic | 45.0% |
| !! | AACAATGATTGTGGTGGTGG+TGG | + | chr2_2:68776734-68776753 | None:intergenic | 45.0% |
| TGTGGCAACAATGATTGTGG+TGG | + | chr2_2:68776740-68776759 | None:intergenic | 45.0% | |
| ACATTGCTGTAGAACGCAAC+AGG | - | chr2_2:68776879-68776898 | Msa0267270:intron | 45.0% | |
| TGCCTGAATCTTACGTCCAA+AGG | - | chr2_2:68776945-68776964 | Msa0267270:CDS | 45.0% | |
| GCCTGAATCTTACGTCCAAA+GGG | - | chr2_2:68776946-68776965 | Msa0267270:CDS | 45.0% | |
| ACCCTTTGGACGTAAGATTC+AGG | + | chr2_2:68776950-68776969 | None:intergenic | 45.0% | |
| TGAGACAAAAATGGGTGGTG+AGG | - | chr2_2:68777306-68777325 | Msa0267270:intron | 45.0% | |
| TGATTGCAAGCTTGGATCAG+TGG | - | chr2_2:68777690-68777709 | Msa0267270:CDS | 45.0% | |
| CCATAGGTGAAAGGGTCTTG+TGG | + | chr2_2:68776539-68776558 | None:intergenic | 50.0% | |
| CCACAAGACCCTTTCACCTA+TGG | - | chr2_2:68776536-68776555 | Msa0267270:three_prime_UTR | 50.0% | |
| GGCAACAATGATTGTGGTGG+TGG | + | chr2_2:68776737-68776756 | None:intergenic | 50.0% | |
| CCATAGGTGAAAGGGTCTTG+TGG | + | chr2_2:68776539-68776558 | None:intergenic | 50.0% | |
| CCACAAGACCCTTTCACCTA+TGG | - | chr2_2:68776536-68776555 | Msa0267270:three_prime_UTR | 50.0% | |
| GGCAACAATGATTGTGGTGG+TGG | + | chr2_2:68776737-68776756 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 68776484 | 68777959 | 68776484 | ID=Msa0267270;Name=Msa0267270 |
| chr2_2 | mRNA | 68776484 | 68777959 | 68776484 | ID=Msa0267270-mRNA-1;Parent=Msa0267270;Name=Msa0267270-mRNA-1;_AED=0.07;_eAED=0.07;_QI=25|1|1|1|1|1|3|173|316 |
| chr2_2 | exon | 68776484 | 68776761 | 68776484 | ID=Msa0267270-mRNA-1:exon:21824;Parent=Msa0267270-mRNA-1 |
| chr2_2 | exon | 68776924 | 68777310 | 68776924 | ID=Msa0267270-mRNA-1:exon:21823;Parent=Msa0267270-mRNA-1 |
| chr2_2 | exon | 68777476 | 68777959 | 68777476 | ID=Msa0267270-mRNA-1:exon:21822;Parent=Msa0267270-mRNA-1 |
| chr2_2 | five_prime_UTR | 68777935 | 68777959 | 68777935 | ID=Msa0267270-mRNA-1:five_prime_utr;Parent=Msa0267270-mRNA-1 |
| chr2_2 | CDS | 68777476 | 68777934 | 68777476 | ID=Msa0267270-mRNA-1:cds;Parent=Msa0267270-mRNA-1 |
| chr2_2 | CDS | 68776924 | 68777310 | 68776924 | ID=Msa0267270-mRNA-1:cds;Parent=Msa0267270-mRNA-1 |
| chr2_2 | CDS | 68776657 | 68776761 | 68776657 | ID=Msa0267270-mRNA-1:cds;Parent=Msa0267270-mRNA-1 |
| chr2_2 | three_prime_UTR | 68776484 | 68776656 | 68776484 | ID=Msa0267270-mRNA-1:three_prime_utr;Parent=Msa0267270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
