Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1393880 | XP_003626318.2 | 87.423 | 326 | 11 | 5 | 1 | 319 | 14 | 316 | 0.0 | 562 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1393880 | sp|Q9C7T4|BH096_ARATH | 48.358 | 335 | 139 | 8 | 1 | 316 | 1 | 320 | 5.30e-82 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1393880 | G7KZP3 | 87.423 | 326 | 11 | 5 | 1 | 319 | 14 | 316 | 0.0 | 562 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1393880 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa1393880 | 0.814699 | 1.348562e-51 | -8.615850e-47 |
| Msa1366340 | Msa1393880 | 0.807678 | 4.496166e-50 | -8.615850e-47 |
| Msa1393880 | Msa1425880 | 0.842727 | 2.166658e-58 | -8.615850e-47 |
| Msa1393880 | Msa1440310 | 0.811556 | 6.598884e-51 | -8.615850e-47 |
| Msa0733010 | Msa1393880 | 0.801064 | 1.073839e-48 | -8.615850e-47 |
| Msa0795870 | Msa1393880 | 0.810719 | 1.002426e-50 | -8.615850e-47 |
| Msa0833530 | Msa1393880 | 0.806339 | 8.632541e-50 | -8.615850e-47 |
| Msa0833650 | Msa1393880 | 0.806579 | 7.679956e-50 | -8.615850e-47 |
| Msa0221000 | Msa1393880 | 0.802455 | 5.564972e-49 | -8.615850e-47 |
| Msa0225100 | Msa1393880 | 0.805109 | 1.564338e-49 | -8.615850e-47 |
| Msa1225860 | Msa1393880 | -0.845253 | 4.557393e-59 | -8.615850e-47 |
| Msa1228200 | Msa1393880 | 0.829771 | 4.270982e-55 | -8.615850e-47 |
| Msa1297230 | Msa1393880 | 0.820026 | 8.526305e-53 | -8.615850e-47 |
| Msa1307560 | Msa1393880 | 0.821209 | 4.560837e-53 | -8.615850e-47 |
| Msa0367870 | Msa1393880 | 0.820879 | 5.430812e-53 | -8.615850e-47 |
| Msa0406770 | Msa1393880 | 0.802048 | 6.749774e-49 | -8.615850e-47 |
| Msa0428920 | Msa1393880 | 0.825482 | 4.575777e-54 | -8.615850e-47 |
| Msa0460590 | Msa1393880 | 0.809648 | 1.705661e-50 | -8.615850e-47 |
| Msa1034500 | Msa1393880 | 0.804559 | 2.038361e-49 | -8.615850e-47 |
| Msa1039020 | Msa1393880 | 0.881911 | 1.618916e-70 | -8.615850e-47 |
| Msa1089450 | Msa1393880 | 0.809979 | 1.447990e-50 | -8.615850e-47 |
| Msa0240900 | Msa1393880 | 0.819480 | 1.135844e-52 | -8.615850e-47 |
| Msa0244640 | Msa1393880 | 0.812202 | 4.772684e-51 | -8.615850e-47 |
| Msa0266180 | Msa1393880 | 0.809121 | 2.212340e-50 | -8.615850e-47 |
| Msa0267270 | Msa1393880 | 0.883376 | 4.729148e-71 | -8.615850e-47 |
| Msa0283330 | Msa1393880 | 0.820888 | 5.405383e-53 | -8.615850e-47 |
| Msa0287740 | Msa1393880 | 0.803438 | 3.485659e-49 | -8.615850e-47 |
| Msa0317970 | Msa1393880 | 0.810669 | 1.027518e-50 | -8.615850e-47 |
| Msa0337700 | Msa1393880 | 0.823277 | 1.510418e-53 | -8.615850e-47 |
| Msa0360210 | Msa1393880 | 0.803620 | 3.195580e-49 | -8.615850e-47 |
| Msa1132840 | Msa1393880 | 0.808830 | 2.553623e-50 | -8.615850e-47 |
| Msa1155170 | Msa1393880 | -0.833108 | 6.444459e-56 | -8.615850e-47 |
| Msa1164960 | Msa1393880 | 0.919123 | 6.665431e-87 | -8.615850e-47 |
| Msa0555860 | Msa1393880 | -0.803410 | 3.532424e-49 | -8.615850e-47 |
| Msa0580370 | Msa1393880 | 0.803639 | 3.167581e-49 | -8.615850e-47 |
| Msa0583360 | Msa1393880 | -0.842001 | 3.374776e-58 | -8.615850e-47 |
| Msa0967380 | Msa1393880 | 0.800827 | 1.200783e-48 | -8.615850e-47 |
| Msa0967870 | Msa1393880 | 0.803159 | 3.982693e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1393880 | MtrunA17_Chr7g0273081 | 87.423 | 326 | 11 | 5 | 1 | 319 | 14 | 316 | 0.0 | 562 |
| Msa1393880 | MtrunA17_Chr1g0191571 | 56.686 | 344 | 101 | 13 | 1 | 316 | 14 | 337 | 9.42e-109 | 320 |
| Msa1393880 | MtrunA17_Chr3g0132471 | 50.920 | 326 | 135 | 6 | 1 | 312 | 1 | 315 | 1.20e-101 | 301 |
| Msa1393880 | MtrunA17_Chr5g0426851 | 44.985 | 329 | 134 | 12 | 1 | 314 | 1 | 297 | 2.32e-81 | 248 |
| Msa1393880 | MtrunA17_Chr8g0366551 | 56.338 | 213 | 74 | 4 | 115 | 315 | 114 | 319 | 9.34e-73 | 227 |
| Msa1393880 | MtrunA17_Chr8g0345871 | 53.846 | 195 | 86 | 2 | 115 | 309 | 171 | 361 | 4.93e-57 | 188 |
| Msa1393880 | MtrunA17_Chr0c01g0489461 | 44.298 | 228 | 102 | 7 | 107 | 315 | 177 | 398 | 1.14e-49 | 170 |
| Msa1393880 | MtrunA17_Chr2g0287761 | 40.761 | 184 | 104 | 3 | 125 | 304 | 1 | 183 | 8.31e-35 | 125 |
| Msa1393880 | MtrunA17_Chr1g0158941 | 35.111 | 225 | 118 | 5 | 105 | 304 | 69 | 290 | 3.65e-31 | 118 |
| Msa1393880 | MtrunA17_Chr5g0400661 | 25.463 | 216 | 137 | 7 | 105 | 306 | 128 | 333 | 3.10e-13 | 69.3 |
| Msa1393880 | MtrunA17_Chr3g0126361 | 79.412 | 34 | 7 | 0 | 123 | 156 | 99 | 132 | 7.28e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1393880 | AT1G72210.1 | 48.358 | 335 | 139 | 8 | 1 | 316 | 1 | 320 | 5.38e-83 | 254 |
| Msa1393880 | AT1G22490.1 | 44.923 | 325 | 146 | 9 | 1 | 313 | 1 | 304 | 6.11e-73 | 228 |
| Msa1393880 | AT1G72210.2 | 48.185 | 303 | 127 | 7 | 1 | 286 | 1 | 290 | 1.06e-71 | 224 |
| Msa1393880 | AT1G22490.2 | 45.333 | 300 | 127 | 9 | 1 | 286 | 1 | 277 | 7.36e-62 | 200 |
| Msa1393880 | AT4G01460.1 | 48.309 | 207 | 93 | 3 | 115 | 312 | 105 | 306 | 5.94e-56 | 184 |
| Msa1393880 | AT4G01460.2 | 48.309 | 207 | 93 | 3 | 115 | 312 | 105 | 306 | 5.94e-56 | 184 |
| Msa1393880 | AT5G65320.1 | 47.980 | 198 | 97 | 3 | 121 | 312 | 98 | 295 | 1.26e-52 | 175 |
| Msa1393880 | AT2G46810.2 | 47.150 | 193 | 95 | 3 | 116 | 307 | 112 | 298 | 1.92e-51 | 172 |
| Msa1393880 | AT2G46810.3 | 47.150 | 193 | 95 | 3 | 116 | 307 | 172 | 358 | 1.04e-50 | 172 |
| Msa1393880 | AT2G46810.1 | 47.150 | 193 | 95 | 3 | 116 | 307 | 184 | 370 | 1.61e-50 | 172 |
| Msa1393880 | AT5G46690.1 | 44.828 | 232 | 87 | 5 | 115 | 312 | 78 | 302 | 8.73e-50 | 169 |
| Msa1393880 | AT3G24140.1 | 41.850 | 227 | 115 | 3 | 105 | 315 | 177 | 402 | 7.45e-49 | 168 |
| Msa1393880 | AT3G24140.2 | 40.343 | 233 | 122 | 3 | 99 | 315 | 171 | 402 | 2.24e-48 | 167 |
| Msa1393880 | AT3G61950.2 | 46.154 | 195 | 97 | 2 | 114 | 307 | 116 | 303 | 1.41e-47 | 162 |
| Msa1393880 | AT3G61950.1 | 46.154 | 195 | 97 | 2 | 114 | 307 | 167 | 354 | 9.67e-47 | 161 |
| Msa1393880 | AT2G46810.4 | 41.629 | 221 | 94 | 4 | 116 | 307 | 112 | 326 | 8.98e-46 | 158 |
| Msa1393880 | AT5G65320.2 | 49.708 | 171 | 81 | 2 | 121 | 286 | 98 | 268 | 9.16e-46 | 157 |
| Msa1393880 | AT3G61950.6 | 46.875 | 160 | 78 | 1 | 114 | 273 | 116 | 268 | 4.98e-40 | 142 |
| Msa1393880 | AT3G61950.3 | 46.875 | 160 | 78 | 1 | 114 | 273 | 167 | 319 | 2.97e-39 | 141 |
| Msa1393880 | AT5G46690.2 | 43.689 | 206 | 75 | 5 | 115 | 286 | 78 | 276 | 1.40e-38 | 138 |
| Msa1393880 | AT3G06120.1 | 38.095 | 189 | 105 | 3 | 125 | 302 | 1 | 188 | 4.88e-32 | 119 |
| Msa1393880 | AT5G53210.2 | 61.538 | 65 | 25 | 0 | 123 | 187 | 100 | 164 | 3.16e-20 | 90.1 |
| Msa1393880 | AT5G53210.1 | 61.538 | 65 | 25 | 0 | 123 | 187 | 100 | 164 | 4.29e-20 | 90.1 |
| Msa1393880 | AT3G61950.4 | 72.093 | 43 | 12 | 0 | 114 | 156 | 167 | 209 | 3.87e-14 | 70.9 |
| Msa1393880 | AT3G61950.5 | 72.093 | 43 | 12 | 0 | 114 | 156 | 167 | 209 | 3.87e-14 | 70.9 |
Find 48 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATTATGCTTATGGAAAT+TGG | 0.223168 | tig0021765:+46995 | Msa1393880:CDS |
| ACCATCTTCAAGAGCTGTTT+TGG | 0.261447 | tig0021765:-47723 | None:intergenic |
| GGTGATCAAGCATCAATTAT+TGG | 0.265730 | tig0021765:+47447 | Msa1393880:CDS |
| GTTGAATTCTTTCCAACATT+TGG | 0.301786 | tig0021765:-48049 | None:intergenic |
| GAGCAGAAGCTACAATTTCT+TGG | 0.311027 | tig0021765:+47498 | Msa1393880:CDS |
| GTGATCAAGCATCAATTATT+GGG | 0.314095 | tig0021765:+47448 | Msa1393880:CDS |
| CATCAGCTGTAGTGACATTA+AGG | 0.320979 | tig0021765:-47782 | None:intergenic |
| ACCCTTTGGACGTAAGATTC+AGG | 0.337296 | tig0021765:-47261 | None:intergenic |
| TTGCTTCAGAATCTGTTAAC+AGG | 0.346873 | tig0021765:-46891 | None:intergenic |
| CAAACAGAGAATTATGCTTA+TGG | 0.362320 | tig0021765:+46988 | Msa1393880:CDS |
| CTTCTATTCTATCAGCGTTA+AGG | 0.373348 | tig0021765:+47812 | Msa1393880:CDS |
| AAGCATAATTCTCTGTTTGT+TGG | 0.375728 | tig0021765:-46984 | None:intergenic |
| GTTGAAGATGATTGCAAGCT+TGG | 0.385709 | tig0021765:+47996 | Msa1393880:CDS |
| ACAATCATTGTTGCCACAAA+TGG | 0.405629 | tig0021765:+47053 | Msa1393880:CDS |
| ACTTTAAGATCTCTTGATGA+TGG | 0.419411 | tig0021765:+48138 | Msa1393880:three_prime_UTR |
| CCACAAGACCCTTTCACCTA+TGG | 0.431613 | tig0021765:+46841 | Msa1393880:CDS |
| TTAACAGGTTGTAATTGTAA+TGG | 0.451750 | tig0021765:-46876 | None:intergenic |
| ACCAAAACAGCTCTTGAAGA+TGG | 0.460812 | tig0021765:+47722 | Msa1393880:CDS |
| ACATTGCTGTAGAACGCAAC+AGG | 0.469202 | tig0021765:+47193 | Msa1393880:CDS |
| TTCTTACTTTGAGATTTGCA+TGG | 0.473698 | tig0021765:-47689 | None:intergenic |
| GAAATTGAACTATCTAAAGA+TGG | 0.481389 | tig0021765:-47090 | None:intergenic |
| TGTTGAATCCATAGGTGAAA+GGG | 0.493303 | tig0021765:-46849 | None:intergenic |
| AAGATGGTTTCTAGTTTGCA+TGG | 0.504712 | tig0021765:+47738 | Msa1393880:CDS |
| GGCAACAATGATTGTGGTGG+TGG | 0.505665 | tig0021765:-47045 | None:intergenic |
| TTTGACACTTCATCCATTTG+TGG | 0.511454 | tig0021765:-47066 | None:intergenic |
| TGCCTGAATCTTACGTCCAA+AGG | 0.512531 | tig0021765:+47259 | Msa1393880:CDS |
| GCCTGAATCTTACGTCCAAA+GGG | 0.523230 | tig0021765:+47260 | Msa1393880:CDS |
| TCTTGTGGATATAGTAGAGT+TGG | 0.525531 | tig0021765:-46826 | None:intergenic |
| AACAATGATTGTGGTGGTGG+TGG | 0.531255 | tig0021765:-47042 | None:intergenic |
| CTGTCACTTGTTGAGTATTG+TGG | 0.536473 | tig0021765:-47582 | None:intergenic |
| TTGTTGAATCCATAGGTGAA+AGG | 0.539793 | tig0021765:-46850 | None:intergenic |
| TAGAGTTGGTTCTAGTGCCA+TGG | 0.564316 | tig0021765:-46812 | None:intergenic |
| CCATAGGTGAAAGGGTCTTG+TGG | 0.567251 | tig0021765:-46841 | None:intergenic |
| AAACAGCCTATGCAATAACT+AGG | 0.570827 | tig0021765:-48205 | None:intergenic |
| ATGGTCTTTGTTGAATCCAT+AGG | 0.572517 | tig0021765:-46857 | None:intergenic |
| GATGTACCTAGTTATTGCAT+AGG | 0.579097 | tig0021765:+48199 | Msa1393880:three_prime_UTR |
| TGCAGCTGTATACCAAATGT+TGG | 0.583918 | tig0021765:+48037 | Msa1393880:CDS |
| TGATTGCAAGCTTGGATCAG+TGG | 0.587540 | tig0021765:+48004 | Msa1393880:CDS |
| CAGAAGCTACAATTTCTTGG+TGG | 0.593039 | tig0021765:+47501 | Msa1393880:CDS |
| TGATCAAGCATCAATTATTG+GGG | 0.599410 | tig0021765:+47449 | Msa1393880:CDS |
| AACCTTCAAAATCAAGAACA+AGG | 0.614022 | tig0021765:+46934 | Msa1393880:CDS |
| TAGAGAAAGAGAGAGATCCA+TGG | 0.615999 | tig0021765:+46795 | Msa1393880:exon |
| AACTAGGTACATCTTGAGAG+AGG | 0.642765 | tig0021765:-48189 | None:intergenic |
| TGCTGATATTGAAGTGACAA+TGG | 0.646131 | tig0021765:+47659 | Msa1393880:CDS |
| ATTTGTGGCAACAATGATTG+TGG | 0.649128 | tig0021765:-47051 | None:intergenic |
| ACTTGTTGAGTATTGTGGAA+AGG | 0.653314 | tig0021765:-47577 | None:intergenic |
| TGTGGCAACAATGATTGTGG+TGG | 0.680500 | tig0021765:-47048 | None:intergenic |
| GATCAAGCATCAATTATTGG+GGG | 0.757063 | tig0021765:+47450 | Msa1393880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTATTTTGTAATTTGT+AGG | + | tig0021765:47974-47993 | Msa1393880:intron | 10.0% |
| !!! | AATTTTATTTTGTAATTTGT+AGG | + | tig0021765:47974-47993 | Msa1393880:intron | 10.0% |
| !!! | TCATTTTTAAATTGAAATTG+CGG | - | tig0021765:47399-47418 | None:intergenic | 15.0% |
| !! | GATCTTAAAGTTAAAAAAAA+GGG | - | tig0021765:48129-48148 | None:intergenic | 15.0% |
| !! | AGATCTTAAAGTTAAAAAAA+AGG | - | tig0021765:48130-48149 | None:intergenic | 15.0% |
| !!! | TCTTATATTATTTGATTTTC+TGG | + | tig0021765:48253-48272 | Msa1393880:three_prime_UTR | 15.0% |
| !!! | TCATTTTTAAATTGAAATTG+CGG | - | tig0021765:47399-47418 | None:intergenic | 15.0% |
| !! | GATCTTAAAGTTAAAAAAAA+GGG | - | tig0021765:48129-48148 | None:intergenic | 15.0% |
| !! | AGATCTTAAAGTTAAAAAAA+AGG | - | tig0021765:48130-48149 | None:intergenic | 15.0% |
| !!! | CTTCTATTACTTTTAAATTG+TGG | + | tig0021765:47285-47304 | Msa1393880:intron | 20.0% |
| !!! | TTTTGATTGATGAATTTTTC+AGG | + | tig0021765:47425-47444 | Msa1393880:intron | 20.0% |
| !!! | TTTGATTGATGAATTTTTCA+GGG | + | tig0021765:47426-47445 | Msa1393880:intron | 20.0% |
| !! | AAGAAAAAAAAAACATGACA+GGG | - | tig0021765:47852-47871 | None:intergenic | 20.0% |
| !! | TTAAGTGCTTACAATAATTT+AGG | - | tig0021765:47927-47946 | None:intergenic | 20.0% |
| !!! | CTTCTATTACTTTTAAATTG+TGG | + | tig0021765:47285-47304 | Msa1393880:intron | 20.0% |
| !!! | TTTTGATTGATGAATTTTTC+AGG | + | tig0021765:47425-47444 | Msa1393880:intron | 20.0% |
| !!! | TTTGATTGATGAATTTTTCA+GGG | + | tig0021765:47426-47445 | Msa1393880:intron | 20.0% |
| !! | AAGAAAAAAAAAACATGACA+GGG | - | tig0021765:47852-47871 | None:intergenic | 20.0% |
| !! | TTAAGTGCTTACAATAATTT+AGG | - | tig0021765:47927-47946 | None:intergenic | 20.0% |
| ! | TTAACAGGTTGTAATTGTAA+TGG | - | tig0021765:46879-46898 | None:intergenic | 25.0% |
| ! | AGAATTATGCTTATGGAAAT+TGG | + | tig0021765:46995-47014 | Msa1393880:CDS | 25.0% |
| ! | GAAATTGAACTATCTAAAGA+TGG | - | tig0021765:47093-47112 | None:intergenic | 25.0% |
| ! | AAGGTGAAAAATTCAGAAAA+GGG | - | tig0021765:47561-47580 | None:intergenic | 25.0% |
| ! | AAAGGTGAAAAATTCAGAAA+AGG | - | tig0021765:47562-47581 | None:intergenic | 25.0% |
| ! | GAAGAAAAAAAAAACATGAC+AGG | - | tig0021765:47853-47872 | None:intergenic | 25.0% |
| ! | TTAACAGGTTGTAATTGTAA+TGG | - | tig0021765:46879-46898 | None:intergenic | 25.0% |
| ! | AGAATTATGCTTATGGAAAT+TGG | + | tig0021765:46995-47014 | Msa1393880:CDS | 25.0% |
| ! | GAAATTGAACTATCTAAAGA+TGG | - | tig0021765:47093-47112 | None:intergenic | 25.0% |
| ! | AAGGTGAAAAATTCAGAAAA+GGG | - | tig0021765:47561-47580 | None:intergenic | 25.0% |
| ! | AAAGGTGAAAAATTCAGAAA+AGG | - | tig0021765:47562-47581 | None:intergenic | 25.0% |
| ! | GAAGAAAAAAAAAACATGAC+AGG | - | tig0021765:47853-47872 | None:intergenic | 25.0% |
| !! | TTGATTTTGAAGGTTGAAGT+TGG | - | tig0021765:46929-46948 | None:intergenic | 30.0% |
| AACCTTCAAAATCAAGAACA+AGG | + | tig0021765:46934-46953 | Msa1393880:CDS | 30.0% | |
| ! | AACCTTGTTCTTGATTTTGA+AGG | - | tig0021765:46939-46958 | None:intergenic | 30.0% |
| AAGCATAATTCTCTGTTTGT+TGG | - | tig0021765:46987-47006 | None:intergenic | 30.0% | |
| CAAACAGAGAATTATGCTTA+TGG | + | tig0021765:46988-47007 | Msa1393880:CDS | 30.0% | |
| !! | AAAGTAATAGAAGTACCCTT+TGG | - | tig0021765:47278-47297 | None:intergenic | 30.0% |
| ! | TGCATTTTGCCTCAATATAA+AGG | - | tig0021765:47333-47352 | None:intergenic | 30.0% |
| GTGATCAAGCATCAATTATT+GGG | + | tig0021765:47448-47467 | Msa1393880:CDS | 30.0% | |
| TGATCAAGCATCAATTATTG+GGG | + | tig0021765:47449-47468 | Msa1393880:CDS | 30.0% | |
| !! | TTCTTACTTTGAGATTTGCA+TGG | - | tig0021765:47692-47711 | None:intergenic | 30.0% |
| GCTAAAAAGTGGTTAGAATT+TGG | - | tig0021765:47882-47901 | None:intergenic | 30.0% | |
| TTCAAGAGAAAGCTAAAAAG+TGG | - | tig0021765:47893-47912 | None:intergenic | 30.0% | |
| GTTGAATTCTTTCCAACATT+TGG | - | tig0021765:48052-48071 | None:intergenic | 30.0% | |
| !! | ACTTTAAGATCTCTTGATGA+TGG | + | tig0021765:48138-48157 | Msa1393880:three_prime_UTR | 30.0% |
| !! | TTGATTTTGAAGGTTGAAGT+TGG | - | tig0021765:46929-46948 | None:intergenic | 30.0% |
| AACCTTCAAAATCAAGAACA+AGG | + | tig0021765:46934-46953 | Msa1393880:CDS | 30.0% | |
| ! | AACCTTGTTCTTGATTTTGA+AGG | - | tig0021765:46939-46958 | None:intergenic | 30.0% |
| AAGCATAATTCTCTGTTTGT+TGG | - | tig0021765:46987-47006 | None:intergenic | 30.0% | |
| CAAACAGAGAATTATGCTTA+TGG | + | tig0021765:46988-47007 | Msa1393880:CDS | 30.0% | |
| !! | AAAGTAATAGAAGTACCCTT+TGG | - | tig0021765:47278-47297 | None:intergenic | 30.0% |
| ! | TGCATTTTGCCTCAATATAA+AGG | - | tig0021765:47333-47352 | None:intergenic | 30.0% |
| GTGATCAAGCATCAATTATT+GGG | + | tig0021765:47448-47467 | Msa1393880:CDS | 30.0% | |
| TGATCAAGCATCAATTATTG+GGG | + | tig0021765:47449-47468 | Msa1393880:CDS | 30.0% | |
| !! | TTCTTACTTTGAGATTTGCA+TGG | - | tig0021765:47692-47711 | None:intergenic | 30.0% |
| GCTAAAAAGTGGTTAGAATT+TGG | - | tig0021765:47882-47901 | None:intergenic | 30.0% | |
| TTCAAGAGAAAGCTAAAAAG+TGG | - | tig0021765:47893-47912 | None:intergenic | 30.0% | |
| GTTGAATTCTTTCCAACATT+TGG | - | tig0021765:48052-48071 | None:intergenic | 30.0% | |
| !! | ACTTTAAGATCTCTTGATGA+TGG | + | tig0021765:48138-48157 | Msa1393880:three_prime_UTR | 30.0% |
| TCTTGTGGATATAGTAGAGT+TGG | - | tig0021765:46829-46848 | None:intergenic | 35.0% | |
| TGTTGAATCCATAGGTGAAA+GGG | - | tig0021765:46852-46871 | None:intergenic | 35.0% | |
| TTGTTGAATCCATAGGTGAA+AGG | - | tig0021765:46853-46872 | None:intergenic | 35.0% | |
| ATGGTCTTTGTTGAATCCAT+AGG | - | tig0021765:46860-46879 | None:intergenic | 35.0% | |
| TTGCTTCAGAATCTGTTAAC+AGG | - | tig0021765:46894-46913 | None:intergenic | 35.0% | |
| ATTTGTGGCAACAATGATTG+TGG | - | tig0021765:47054-47073 | None:intergenic | 35.0% | |
| ACAATCATTGTTGCCACAAA+TGG | + | tig0021765:47053-47072 | Msa1393880:CDS | 35.0% | |
| TTTGACACTTCATCCATTTG+TGG | - | tig0021765:47069-47088 | None:intergenic | 35.0% | |
| TGCTGCAAACCTTTATATTG+AGG | + | tig0021765:47321-47340 | Msa1393880:intron | 35.0% | |
| GGTGATCAAGCATCAATTAT+TGG | + | tig0021765:47447-47466 | Msa1393880:CDS | 35.0% | |
| GATCAAGCATCAATTATTGG+GGG | + | tig0021765:47450-47469 | Msa1393880:CDS | 35.0% | |
| TGGTGTTCAGAAACAAAAAG+AGG | + | tig0021765:47521-47540 | Msa1393880:CDS | 35.0% | |
| ! | ACTTGTTGAGTATTGTGGAA+AGG | - | tig0021765:47580-47599 | None:intergenic | 35.0% |
| !! | TGAGAGTTCTGAGACAAAAA+TGG | + | tig0021765:47611-47630 | Msa1393880:CDS | 35.0% |
| !! | GAGAGTTCTGAGACAAAAAT+GGG | + | tig0021765:47612-47631 | Msa1393880:CDS | 35.0% |
| TGCTGATATTGAAGTGACAA+TGG | + | tig0021765:47659-47678 | Msa1393880:CDS | 35.0% | |
| !! | AAGATGGTTTCTAGTTTGCA+TGG | + | tig0021765:47738-47757 | Msa1393880:CDS | 35.0% |
| CTTCTATTCTATCAGCGTTA+AGG | + | tig0021765:47812-47831 | Msa1393880:CDS | 35.0% | |
| AGTGGTTAGAATTTGGAAAG+TGG | - | tig0021765:47875-47894 | None:intergenic | 35.0% | |
| GATGTACCTAGTTATTGCAT+AGG | + | tig0021765:48199-48218 | Msa1393880:three_prime_UTR | 35.0% | |
| AAACAGCCTATGCAATAACT+AGG | - | tig0021765:48208-48227 | None:intergenic | 35.0% | |
| TCTTGTGGATATAGTAGAGT+TGG | - | tig0021765:46829-46848 | None:intergenic | 35.0% | |
| TGTTGAATCCATAGGTGAAA+GGG | - | tig0021765:46852-46871 | None:intergenic | 35.0% | |
| TTGTTGAATCCATAGGTGAA+AGG | - | tig0021765:46853-46872 | None:intergenic | 35.0% | |
| ATGGTCTTTGTTGAATCCAT+AGG | - | tig0021765:46860-46879 | None:intergenic | 35.0% | |
| TTGCTTCAGAATCTGTTAAC+AGG | - | tig0021765:46894-46913 | None:intergenic | 35.0% | |
| ATTTGTGGCAACAATGATTG+TGG | - | tig0021765:47054-47073 | None:intergenic | 35.0% | |
| ACAATCATTGTTGCCACAAA+TGG | + | tig0021765:47053-47072 | Msa1393880:CDS | 35.0% | |
| TTTGACACTTCATCCATTTG+TGG | - | tig0021765:47069-47088 | None:intergenic | 35.0% | |
| TGCTGCAAACCTTTATATTG+AGG | + | tig0021765:47321-47340 | Msa1393880:intron | 35.0% | |
| GGTGATCAAGCATCAATTAT+TGG | + | tig0021765:47447-47466 | Msa1393880:CDS | 35.0% | |
| GATCAAGCATCAATTATTGG+GGG | + | tig0021765:47450-47469 | Msa1393880:CDS | 35.0% | |
| TGGTGTTCAGAAACAAAAAG+AGG | + | tig0021765:47521-47540 | Msa1393880:CDS | 35.0% | |
| ! | ACTTGTTGAGTATTGTGGAA+AGG | - | tig0021765:47580-47599 | None:intergenic | 35.0% |
| !! | TGAGAGTTCTGAGACAAAAA+TGG | + | tig0021765:47611-47630 | Msa1393880:CDS | 35.0% |
| !! | GAGAGTTCTGAGACAAAAAT+GGG | + | tig0021765:47612-47631 | Msa1393880:CDS | 35.0% |
| TGCTGATATTGAAGTGACAA+TGG | + | tig0021765:47659-47678 | Msa1393880:CDS | 35.0% | |
| !! | AAGATGGTTTCTAGTTTGCA+TGG | + | tig0021765:47738-47757 | Msa1393880:CDS | 35.0% |
| CTTCTATTCTATCAGCGTTA+AGG | + | tig0021765:47812-47831 | Msa1393880:CDS | 35.0% | |
| AGTGGTTAGAATTTGGAAAG+TGG | - | tig0021765:47875-47894 | None:intergenic | 35.0% | |
| GATGTACCTAGTTATTGCAT+AGG | + | tig0021765:48199-48218 | Msa1393880:three_prime_UTR | 35.0% | |
| AAACAGCCTATGCAATAACT+AGG | - | tig0021765:48208-48227 | None:intergenic | 35.0% | |
| TAGAGAAAGAGAGAGATCCA+TGG | + | tig0021765:46795-46814 | Msa1393880:exon | 40.0% | |
| !!! | TGTTTTGACTCTGCGTTTCT+TGG | - | tig0021765:47133-47152 | None:intergenic | 40.0% |
| GAGGCAAAATGCAGAAATTG+CGG | + | tig0021765:47340-47359 | Msa1393880:intron | 40.0% | |
| CTGCAAGAGAAACGATTCTA+AGG | - | tig0021765:47376-47395 | None:intergenic | 40.0% | |
| GAGCAGAAGCTACAATTTCT+TGG | + | tig0021765:47498-47517 | Msa1393880:CDS | 40.0% | |
| CAGAAGCTACAATTTCTTGG+TGG | + | tig0021765:47501-47520 | Msa1393880:CDS | 40.0% | |
| ! | CTGTCACTTGTTGAGTATTG+TGG | - | tig0021765:47585-47604 | None:intergenic | 40.0% |
| !! | AGTTCTGAGACAAAAATGGG+TGG | + | tig0021765:47615-47634 | Msa1393880:CDS | 40.0% |
| ACCAAAACAGCTCTTGAAGA+TGG | + | tig0021765:47722-47741 | Msa1393880:CDS | 40.0% | |
| ! | ACCATCTTCAAGAGCTGTTT+TGG | - | tig0021765:47726-47745 | None:intergenic | 40.0% |
| CATCAGCTGTAGTGACATTA+AGG | - | tig0021765:47785-47804 | None:intergenic | 40.0% | |
| AGCGTTAAGGTAATTGTCTG+TGG | + | tig0021765:47825-47844 | Msa1393880:intron | 40.0% | |
| GTTGAAGATGATTGCAAGCT+TGG | + | tig0021765:47996-48015 | Msa1393880:CDS | 40.0% | |
| TGCAGCTGTATACCAAATGT+TGG | + | tig0021765:48037-48056 | Msa1393880:CDS | 40.0% | |
| AACTAGGTACATCTTGAGAG+AGG | - | tig0021765:48192-48211 | None:intergenic | 40.0% | |
| TAGAGAAAGAGAGAGATCCA+TGG | + | tig0021765:46795-46814 | Msa1393880:exon | 40.0% | |
| !!! | TGTTTTGACTCTGCGTTTCT+TGG | - | tig0021765:47133-47152 | None:intergenic | 40.0% |
| GAGGCAAAATGCAGAAATTG+CGG | + | tig0021765:47340-47359 | Msa1393880:intron | 40.0% | |
| CTGCAAGAGAAACGATTCTA+AGG | - | tig0021765:47376-47395 | None:intergenic | 40.0% | |
| GAGCAGAAGCTACAATTTCT+TGG | + | tig0021765:47498-47517 | Msa1393880:CDS | 40.0% | |
| CAGAAGCTACAATTTCTTGG+TGG | + | tig0021765:47501-47520 | Msa1393880:CDS | 40.0% | |
| ! | CTGTCACTTGTTGAGTATTG+TGG | - | tig0021765:47585-47604 | None:intergenic | 40.0% |
| !! | AGTTCTGAGACAAAAATGGG+TGG | + | tig0021765:47615-47634 | Msa1393880:CDS | 40.0% |
| ACCAAAACAGCTCTTGAAGA+TGG | + | tig0021765:47722-47741 | Msa1393880:CDS | 40.0% | |
| ! | ACCATCTTCAAGAGCTGTTT+TGG | - | tig0021765:47726-47745 | None:intergenic | 40.0% |
| CATCAGCTGTAGTGACATTA+AGG | - | tig0021765:47785-47804 | None:intergenic | 40.0% | |
| AGCGTTAAGGTAATTGTCTG+TGG | + | tig0021765:47825-47844 | Msa1393880:intron | 40.0% | |
| GTTGAAGATGATTGCAAGCT+TGG | + | tig0021765:47996-48015 | Msa1393880:CDS | 40.0% | |
| TGCAGCTGTATACCAAATGT+TGG | + | tig0021765:48037-48056 | Msa1393880:CDS | 40.0% | |
| AACTAGGTACATCTTGAGAG+AGG | - | tig0021765:48192-48211 | None:intergenic | 40.0% | |
| !! | TAGAGTTGGTTCTAGTGCCA+TGG | - | tig0021765:46815-46834 | None:intergenic | 45.0% |
| !! | AACAATGATTGTGGTGGTGG+TGG | - | tig0021765:47045-47064 | None:intergenic | 45.0% |
| TGTGGCAACAATGATTGTGG+TGG | - | tig0021765:47051-47070 | None:intergenic | 45.0% | |
| ACATTGCTGTAGAACGCAAC+AGG | + | tig0021765:47193-47212 | Msa1393880:CDS | 45.0% | |
| TGCCTGAATCTTACGTCCAA+AGG | + | tig0021765:47259-47278 | Msa1393880:CDS | 45.0% | |
| GCCTGAATCTTACGTCCAAA+GGG | + | tig0021765:47260-47279 | Msa1393880:CDS | 45.0% | |
| ACCCTTTGGACGTAAGATTC+AGG | - | tig0021765:47264-47283 | None:intergenic | 45.0% | |
| TGAGACAAAAATGGGTGGTG+AGG | + | tig0021765:47620-47639 | Msa1393880:CDS | 45.0% | |
| TGATTGCAAGCTTGGATCAG+TGG | + | tig0021765:48004-48023 | Msa1393880:CDS | 45.0% | |
| !! | TAGAGTTGGTTCTAGTGCCA+TGG | - | tig0021765:46815-46834 | None:intergenic | 45.0% |
| !! | AACAATGATTGTGGTGGTGG+TGG | - | tig0021765:47045-47064 | None:intergenic | 45.0% |
| TGTGGCAACAATGATTGTGG+TGG | - | tig0021765:47051-47070 | None:intergenic | 45.0% | |
| ACATTGCTGTAGAACGCAAC+AGG | + | tig0021765:47193-47212 | Msa1393880:CDS | 45.0% | |
| TGCCTGAATCTTACGTCCAA+AGG | + | tig0021765:47259-47278 | Msa1393880:CDS | 45.0% | |
| GCCTGAATCTTACGTCCAAA+GGG | + | tig0021765:47260-47279 | Msa1393880:CDS | 45.0% | |
| ACCCTTTGGACGTAAGATTC+AGG | - | tig0021765:47264-47283 | None:intergenic | 45.0% | |
| TGAGACAAAAATGGGTGGTG+AGG | + | tig0021765:47620-47639 | Msa1393880:CDS | 45.0% | |
| TGATTGCAAGCTTGGATCAG+TGG | + | tig0021765:48004-48023 | Msa1393880:CDS | 45.0% | |
| CCATAGGTGAAAGGGTCTTG+TGG | - | tig0021765:46844-46863 | None:intergenic | 50.0% | |
| CCACAAGACCCTTTCACCTA+TGG | + | tig0021765:46841-46860 | Msa1393880:CDS | 50.0% | |
| GGCAACAATGATTGTGGTGG+TGG | - | tig0021765:47048-47067 | None:intergenic | 50.0% | |
| CCATAGGTGAAAGGGTCTTG+TGG | - | tig0021765:46844-46863 | None:intergenic | 50.0% | |
| CCACAAGACCCTTTCACCTA+TGG | + | tig0021765:46841-46860 | Msa1393880:CDS | 50.0% | |
| GGCAACAATGATTGTGGTGG+TGG | - | tig0021765:47048-47067 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021765 | gene | 46789 | 48273 | 46789 | ID=Msa1393880;Name=Msa1393880 |
| tig0021765 | mRNA | 46789 | 48273 | 46789 | ID=Msa1393880-mRNA-1;Parent=Msa1393880;Name=Msa1393880-mRNA-1;_AED=0.07;_eAED=0.07;_QI=25|1|1|1|1|1|3|173|319 |
| tig0021765 | exon | 46789 | 47281 | 46789 | ID=Msa1393880-mRNA-1:exon:14083;Parent=Msa1393880-mRNA-1 |
| tig0021765 | exon | 47447 | 47833 | 47447 | ID=Msa1393880-mRNA-1:exon:14084;Parent=Msa1393880-mRNA-1 |
| tig0021765 | exon | 47996 | 48273 | 47996 | ID=Msa1393880-mRNA-1:exon:14085;Parent=Msa1393880-mRNA-1 |
| tig0021765 | five_prime_UTR | 46789 | 46813 | 46789 | ID=Msa1393880-mRNA-1:five_prime_utr;Parent=Msa1393880-mRNA-1 |
| tig0021765 | CDS | 46814 | 47281 | 46814 | ID=Msa1393880-mRNA-1:cds;Parent=Msa1393880-mRNA-1 |
| tig0021765 | CDS | 47447 | 47833 | 47447 | ID=Msa1393880-mRNA-1:cds;Parent=Msa1393880-mRNA-1 |
| tig0021765 | CDS | 47996 | 48100 | 47996 | ID=Msa1393880-mRNA-1:cds;Parent=Msa1393880-mRNA-1 |
| tig0021765 | three_prime_UTR | 48101 | 48273 | 48101 | ID=Msa1393880-mRNA-1:three_prime_utr;Parent=Msa1393880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
