AlfalfaGEDB | Msa1234880

M. sativa cultivar zhongmu-4 / Msa1234880

KEGG: K12620
GO: -
PFAM: PF01423.25

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234880	XP_003627334.2	100.000	128	0	0	1	128	1	128	3.48e-87	259

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234880	sp\|Q8LFL8\|LSM1B_ARATH	86.719	128	17	0	1	128	1	128	1.70e-79	233

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234880	G7L7M4	100.000	128	0	0	1	128	1	128	1.66e-87	259

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032260	Msa1234880	0.801694	7.979913e-49	-8.615850e-47
Msa0076000	Msa1234880	0.800072	1.710698e-48	-8.615850e-47
Msa0199690	Msa1234880	0.805242	1.467547e-49	-8.615850e-47
Msa0568820	Msa1234880	0.817156	3.815648e-52	-8.615850e-47
Msa0619070	Msa1234880	0.818524	1.873938e-52	-8.615850e-47
Msa0709500	Msa1234880	0.815009	1.151277e-51	-8.615850e-47
Msa0790850	Msa1234880	0.815499	8.959837e-52	-8.615850e-47
Msa0974530	Msa1234880	0.803493	3.394955e-49	-8.615850e-47
Msa1125760	Msa1234880	0.800356	1.497938e-48	-8.615850e-47
Msa1171360	Msa1234880	0.816054	6.737102e-52	-8.615850e-47

Showing 1 to 10 of 19 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234880	MtrunA17_Chr8g0344441	100.000	128	0	0	1	128	1	128	3.20e-91	259
Msa1234880	MtrunA17_Chr2g0301051	82.812	128	22	0	1	128	1	128	2.35e-76	222
Msa1234880	MtrunA17_Chr4g0044211	38.356	73	44	1	14	85	7	79	1.97e-12	58.9

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234880	AT3G14080.2	86.719	128	17	0	1	128	1	128	1.72e-80	233
Msa1234880	AT3G14080.1	86.719	128	17	0	1	128	1	128	1.72e-80	233
Msa1234880	AT1G19120.1	81.250	128	24	0	1	128	1	128	2.07e-74	217
Msa1234880	AT3G14080.4	83.621	116	17	1	15	128	3	118	1.43e-65	194
Msa1234880	AT3G14080.3	90.123	81	8	0	1	81	1	81	5.61e-50	154
Msa1234880	AT1G65700.2	38.667	75	45	1	12	85	4	78	5.58e-12	58.2
Msa1234880	AT1G65700.1	38.667	75	45	1	12	85	4	78	5.58e-12	58.2

Showing 1 to 7 of 7 entries

Previous1Next

Find 62 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTAGCAAGTGAAGTAGAA+AGG	0.522695	8_2:+12624994	None:intergenic
AAGAACAAAATAAAATAACT+TGG	0.534155	8_2:+12622225	None:intergenic
AAGAATGGAGTTCCTTGACT+TGG	0.481713	8_2:-12622303	Msa1234880:CDS
AAGAGCCGCTGTAATATTTG+CGG	0.553134	8_2:+12622250	None:intergenic
AAGCGAAAGAGTGAAAATTT+GGG	0.332275	8_2:+12625250	None:intergenic
AAGTGGGTGATTTGAGAAAA+AGG	0.224442	8_2:+12625216	None:intergenic
ACCAACAATTACCCTCTCAC+AGG	0.608128	8_2:+12624127	None:intergenic
ACCCTCCTGATTTCTTCTGT+AGG	0.607048	8_2:+12623906	None:intergenic
ACGAGATGGTAGAAAGCTCA+TGG	0.524959	8_2:-12624276	Msa1234880:CDS
AGAAAGCAACGGAATAATAA+TGG	0.398474	8_2:+12622136	None:intergenic

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGCGAAAGAGTGAAAATTT+GGG	+	chr8_2:12622051-12622070	None:intergenic	30.0%
TCACAATAAAAGGGTTAAGT+GGG	+	chr8_2:12622101-12622120	None:intergenic	30.0%
ATCACAATAAAAGGGTTAAG+TGG	+	chr8_2:12622102-12622121	None:intergenic	30.0%
TAACGGAATGAAAAGAACTA+AGG	+	chr8_2:12622137-12622156	None:intergenic	30.0%
CAGCTTATAAGCTATAATCA+AGG	+	chr8_2:12622403-12622422	None:intergenic	30.0%
CTTGATTATAGCTTATAAGC+TGG	-	chr8_2:12622401-12622420	Msa1234880:intron	30.0%
AATAAGTTCGTGTTACCAAA+CGG	+	chr8_2:12622443-12622462	None:intergenic	30.0%
TTTCTTGTCAAGGTAGTTTA+CGG	+	chr8_2:12622604-12622623	None:intergenic	30.0%
TACCTATCAACTTAAGCTTT+GGG	-	chr8_2:12622697-12622716	Msa1234880:intron	30.0%
ACATCCTGAAAATTGAAAGA+CGG	+	chr8_2:12623335-12623354	None:intergenic	30.0%

Showing 1 to 10 of 192 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	12622026	12625294	12622026	ID=Msa1234880;Name=Msa1234880
chr8_2	mRNA	12622026	12625294	12622026	ID=Msa1234880-mRNA-1;Parent=Msa1234880;Name=Msa1234880-mRNA-1;_AED=0.14;_eAED=0.14;_QI=249\|1\|1\|1\|1\|1\|5\|272\|128
chr8_2	exon	12622026	12622375	12622026	ID=Msa1234880-mRNA-1:exon:4921;Parent=Msa1234880-mRNA-1
chr8_2	exon	12623908	12623970	12623908	ID=Msa1234880-mRNA-1:exon:4920;Parent=Msa1234880-mRNA-1
chr8_2	exon	12624055	12624170	12624055	ID=Msa1234880-mRNA-1:exon:4919;Parent=Msa1234880-mRNA-1
chr8_2	exon	12624249	12624317	12624249	ID=Msa1234880-mRNA-1:exon:4918;Parent=Msa1234880-mRNA-1
chr8_2	exon	12624985	12625294	12624985	ID=Msa1234880-mRNA-1:exon:4917;Parent=Msa1234880-mRNA-1
chr8_2	five_prime_UTR	12625046	12625294	12625046	ID=Msa1234880-mRNA-1:five_prime_utr;Parent=Msa1234880-mRNA-1
chr8_2	CDS	12624985	12625045	12624985	ID=Msa1234880-mRNA-1:cds;Parent=Msa1234880-mRNA-1
chr8_2	CDS	12624249	12624317	12624249	ID=Msa1234880-mRNA-1:cds;Parent=Msa1234880-mRNA-1
chr8_2	CDS	12624055	12624170	12624055	ID=Msa1234880-mRNA-1:cds;Parent=Msa1234880-mRNA-1
chr8_2	CDS	12623908	12623970	12623908	ID=Msa1234880-mRNA-1:cds;Parent=Msa1234880-mRNA-1
chr8_2	CDS	12622298	12622375	12622298	ID=Msa1234880-mRNA-1:cds;Parent=Msa1234880-mRNA-1
chr8_2	three_prime_UTR	12622026	12622297	12622026	ID=Msa1234880-mRNA-1:three_prime_utr;Parent=Msa1234880-mRNA-1

Gene Sequence

>Msa1234880

ATGTCTTGGGCTGCTCCTGAGGATCTCTACCTTTCTACTTCACTTGCTAGTTATCTTGACAAGAAACTTCTTATATTGCTACGAGATGGTAGAAAGCTCATGGGGACACTTCGCTCTTTTGATCAATTTGCTAACGCTGTTCTTGAGGGTGCCTGTGAGAGGGTAATTGTTGGTGATCTATATTGTGACATCCCTCTAGGTCTTTATGTAATCCGTGGGGAAAATGTTGTTCTAATTGGTGAGATGGATGTGGAGAGGGAGGAACTTCCCCCACATATGACGCGTGTTCCTACAGAAGAAATCAGGAGGGCACAGAAAGTGGAAAGGGATGCTTCAGAACTAAAAGGGACTATGAGAAAAAGAATGGAGTTCCTTGACTTGGACTAG

Protein sequence

>Msa1234880

MSWAAPEDLYLSTSLASYLDKKLLILLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGEMDVEREELPPHMTRVPTEEIRRAQKVERDASELKGTMRKRMEFLDLD*