AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0032260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032260 MtrunA17_Chr1g0190621 100.000 126 0 0 1 126 1 126 5.49e-88 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0032260 AT1G08780.1 71.318 129 34 1 1 126 1 129 1.70e-62 187

Find 59 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCAATGTTTCTAACTTTC+CGG 0.166301 1_1:-59280883 Msa0032260:three_prime_UTR
TAACTTATTTATAGATTTCT+AGG 0.180155 1_1:-59281006 Msa0032260:three_prime_UTR
GATTTCTAGGTTACTTTCTA+TGG 0.191131 1_1:-59280993 Msa0032260:three_prime_UTR
TTTCTCTGCTTCTCAGGTTC+TGG 0.243160 1_1:-59284279 Msa0032260:five_prime_UTR
AAAATTCTGTATGGGAAGTT+TGG 0.251421 1_1:-59281057 Msa0032260:CDS
ACAATAAAGACTCCTTTCTT+TGG 0.267753 1_1:+59280821 None:intergenic
ACAGGAATCAAATGATAATT+TGG 0.284647 1_1:-59281271 Msa0032260:intron
AGAAGCGACAAGCCAGAAAT+TGG 0.310931 1_1:-59281133 Msa0032260:CDS
AACATTTGATACTTATGCTT+TGG 0.324058 1_1:-59280698 Msa0032260:three_prime_UTR
AGGTCGTTCGGTTTCAAATA+GGG 0.342219 1_1:-59281212 Msa0032260:CDS
GAGGTCGTTCGGTTTCAAAT+AGG 0.358066 1_1:-59281213 Msa0032260:CDS
GTTGATTCAAATTCGATGTA+TGG 0.367701 1_1:+59284218 None:intergenic
CTCCCAGGTAACTTCCGTTT+CGG 0.367751 1_1:+59284091 None:intergenic
CAATAAAGACTCCTTTCTTT+GGG 0.368723 1_1:+59280822 None:intergenic
CGAATTTGTTGATGTTCTGC+TGG 0.380247 1_1:+59284066 None:intergenic
AGATTGTGTCTCTTAATTGT+AGG 0.390561 1_1:-59280934 Msa0032260:three_prime_UTR
ACACTCTTTCTCTGCTTCTC+AGG 0.391951 1_1:-59284285 Msa0032260:five_prime_UTR
CGATCCAACCTAGTAATAAC+TGG 0.411872 1_1:-59280776 Msa0032260:three_prime_UTR
GATCCGAAACGGAAGTTACC+TGG 0.424382 1_1:-59284094 Msa0032260:CDS
CAGCAGAACATCAACAAATT+CGG 0.438286 1_1:-59284065 Msa0032260:CDS
GAACTGAAGAAAATTCTGTA+TGG 0.443165 1_1:-59281066 Msa0032260:CDS
TACAATTAAGAGACACAATC+TGG 0.461620 1_1:+59280936 None:intergenic
CTGCTCTCTACTTCATCCTT+AGG 0.477281 1_1:+59281171 None:intergenic
TCACAGATGAAGAGGTCGTT+CGG 0.479003 1_1:-59281224 Msa0032260:CDS
TTGAATCAACAAGATGCAAC+AGG 0.487875 1_1:-59284205 Msa0032260:intron
GATGTTCTGCTGGTCCTCCC+AGG 0.504132 1_1:+59284076 None:intergenic
AAGCAGAGAAAGAGTGTGAT+GGG 0.504996 1_1:+59284291 None:intergenic
GAGAAAGAGTGTGATGGGCC+TGG 0.506330 1_1:+59284296 None:intergenic
TTGACCAGTTATTACTAGGT+TGG 0.511692 1_1:+59280772 None:intergenic
CAGTTCTTAAAATTTGAGCC+AGG 0.529405 1_1:-59284314 Msa0032260:five_prime_UTR
TTGTATTCTATCCCAAAGAA+AGG 0.533087 1_1:-59280833 Msa0032260:three_prime_UTR
GGTATTTGCTCATGTGCCTA+AGG 0.537164 1_1:-59281187 Msa0032260:CDS
AACTGAAGAAAATTCTGTAT+GGG 0.540625 1_1:-59281065 Msa0032260:CDS
TTGTGATGCGTAAAGGGAGG+AGG 0.548135 1_1:-59284116 Msa0032260:intron
GGTCGTTCGGTTTCAAATAG+GGG 0.554503 1_1:-59281211 Msa0032260:CDS
GGAATCAAATGATAATTTGG+AGG 0.556672 1_1:-59281268 Msa0032260:CDS
AGCCGGAAAGTTAGAAACAT+TGG 0.556790 1_1:+59280881 None:intergenic
ACCGTTGACCAGTTATTACT+AGG 0.557040 1_1:+59280768 None:intergenic
GAAGCAGAGAAAGAGTGTGA+TGG 0.560791 1_1:+59284290 None:intergenic
TGGAGAATCTATCAATCTTG+AGG 0.571653 1_1:-59281037 Msa0032260:CDS
CTAAGGATGAAGTAGAGAGC+AGG 0.573213 1_1:-59281170 Msa0032260:CDS
GTTAATTCTCACAGATGAAG+AGG 0.578655 1_1:-59281232 Msa0032260:CDS
CTTGACATATTTGAGCATGT+TGG 0.583276 1_1:-59280739 Msa0032260:three_prime_UTR
AAATCAGTCAAAGTTCTATG+AGG 0.588949 1_1:+59280962 None:intergenic
ATCTCACAGAATGAACAAGC+CGG 0.592616 1_1:+59280864 None:intergenic
TGATGAGATCAAAATCGCTA+AGG 0.599557 1_1:-59284012 Msa0032260:intron
CCAGAAATTGGAAAAGCTTG+AGG 0.599943 1_1:-59281121 Msa0032260:CDS
ATCCGAAACGGAAGTTACCT+GGG 0.600013 1_1:-59284093 Msa0032260:CDS
CATTGGCAAACAGTGAAATG+AGG 0.613129 1_1:+59280898 None:intergenic
GGTTCTGGTCAAGCTTGCAG+TGG 0.615906 1_1:-59284264 Msa0032260:five_prime_UTR
CGTTCGGTTTCAAATAGGGG+AGG 0.636159 1_1:-59281208 Msa0032260:CDS
AGAATCTATCAATCTTGAGG+AGG 0.639907 1_1:-59281034 Msa0032260:CDS
AAAGGGAGGAGGATCCGAAA+CGG 0.642912 1_1:-59284105 Msa0032260:intron
ACCTAGTAATAACTGGTCAA+CGG 0.646427 1_1:-59280769 Msa0032260:three_prime_UTR
AGAACATCAACAAATTCGGA+AGG 0.648692 1_1:-59284061 Msa0032260:CDS
TTCAGACATCTGAGCAACCA+CGG 0.661375 1_1:+59281086 None:intergenic
GAAATTGGAAAAGCTTGAGG+AGG 0.664223 1_1:-59281118 Msa0032260:CDS
TGAGGAGGAGAAACAATCCG+TGG 0.717310 1_1:-59281103 Msa0032260:CDS
CGAAACGGAAGTTACCTGGG+AGG 0.771650 1_1:-59284090 Msa0032260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAAATTAAAAAATAT+AGG - chr1_1:59282896-59282915 Msa0032260:intron 0.0%
!!! TTAATAACTTTTTTCAATTA+AGG + chr1_1:59281377-59281396 None:intergenic 10.0%
!! AATTATTGCTTATTAAAATA+TGG - chr1_1:59283007-59283026 Msa0032260:intron 10.0%
!! TTATTAAAATATGGTATAAA+CGG - chr1_1:59283016-59283035 Msa0032260:intron 10.0%
!! AATCTCAAAAATTCAATTTA+GGG + chr1_1:59280827-59280846 None:intergenic 15.0%
!!! ATTTTAAAGGAAAACAAAAA+TGG - chr1_1:59281583-59281602 Msa0032260:intron 15.0%
!! AAAAACAAAAATACAAAATC+TGG - chr1_1:59281720-59281739 Msa0032260:intron 15.0%
!!! TTTTCAATTTATTTCCATAA+AGG - chr1_1:59282103-59282122 Msa0032260:intron 15.0%
!! ATATATATAATTCTTGTGAA+TGG + chr1_1:59282446-59282465 None:intergenic 15.0%
!! AAAAAAAATATATCAGCAAT+AGG - chr1_1:59282584-59282603 Msa0032260:intron 15.0%
!! AAAAAAATATATCAGCAATA+GGG - chr1_1:59282585-59282604 Msa0032260:intron 15.0%
!!! GTAAATTATTTTGAGAAATA+TGG - chr1_1:59282701-59282720 Msa0032260:intron 15.0%
!!! ATACATGTCTTTTTTTTTTA+AGG + chr1_1:59282872-59282891 None:intergenic 15.0%
!! AAATAATATTTAGTTGTTTG+AGG - chr1_1:59283585-59283604 Msa0032260:intron 15.0%
!! AACATCAAAATATAAAACAA+TGG + chr1_1:59283682-59283701 None:intergenic 15.0%
!! TAACTTATTTATAGATTTCT+AGG - chr1_1:59283990-59284009 Msa0032260:intron 15.0%
!! CAATCTCAAAAATTCAATTT+AGG + chr1_1:59280828-59280847 None:intergenic 20.0%
!!! GAGTGTTTCATTTATTTTAA+AGG - chr1_1:59281570-59281589 Msa0032260:intron 20.0%
!!! TTGTTTTTTTCCATTCAAAT+AGG + chr1_1:59281708-59281727 None:intergenic 20.0%
!!! CTCAACATACATTTTTATTT+TGG - chr1_1:59281754-59281773 Msa0032260:intron 20.0%
!! CTCAAATAATGATAATTATC+TGG + chr1_1:59282007-59282026 None:intergenic 20.0%
!! TATGGAAATAAATTGAAAAC+AGG + chr1_1:59282102-59282121 None:intergenic 20.0%
!! TACAACCAAATTTATTAGAA+AGG + chr1_1:59282565-59282584 None:intergenic 20.0%
!! AACAACTATAAAAATTTACC+TGG - chr1_1:59282647-59282666 Msa0032260:intron 20.0%
!!! ATAAGCACTTGTTATATAAA+AGG + chr1_1:59283233-59283252 None:intergenic 20.0%
!!! TATATTTTGATGTTAATGCA+TGG - chr1_1:59283688-59283707 Msa0032260:intron 20.0%
!!! AAAGGTTTTGGAATAGAAAT+GGG - chr1_1:59281045-59281064 Msa0032260:CDS 25.0%
! GGATATAAACTACTCATATA+GGG + chr1_1:59281089-59281108 None:intergenic 25.0%
! AGGATATAAACTACTCATAT+AGG + chr1_1:59281090-59281109 None:intergenic 25.0%
! AATTTATAAGCTCAGATATG+TGG + chr1_1:59281175-59281194 None:intergenic 25.0%
!!! TTTTTCAATTAAGGCTACAA+TGG + chr1_1:59281368-59281387 None:intergenic 25.0%
! GTAGTGTTTGATAAAATTAG+CGG + chr1_1:59281414-59281433 None:intergenic 25.0%
! TAAAGGAAAACAAAAATGGT+TGG - chr1_1:59281587-59281606 Msa0032260:intron 25.0%
! TGATTCATATTGTATGATTC+TGG + chr1_1:59281675-59281694 None:intergenic 25.0%
! AAACTATAAGAACGATATAG+CGG + chr1_1:59281976-59281995 None:intergenic 25.0%
!! TATCGTTCTTATAGTTTTTG+AGG - chr1_1:59281979-59281998 Msa0032260:intron 25.0%
! TATAAGCTATTTATCCAAAC+GGG + chr1_1:59282130-59282149 None:intergenic 25.0%
! CTATAAGCTATTTATCCAAA+CGG + chr1_1:59282131-59282150 None:intergenic 25.0%
!! CTTACATAATTTGAAGTGTT+TGG - chr1_1:59282248-59282267 Msa0032260:intron 25.0%
! TCTCACCTTTCTAATAAATT+TGG - chr1_1:59282557-59282576 Msa0032260:intron 25.0%
! ACAATACAAATACAAATACC+AGG + chr1_1:59282668-59282687 None:intergenic 25.0%
! CGTGTGTTAATTAAAGAATA+AGG - chr1_1:59282814-59282833 Msa0032260:intron 25.0%
!! AAGAATAAGGTATTCTAGTT+AGG - chr1_1:59282827-59282846 Msa0032260:intron 25.0%
!!! ATATAGGCTTTGAAGAAAAA+AGG - chr1_1:59282912-59282931 Msa0032260:intron 25.0%
!!! TTTGTTTTCATAAGCTATCA+TGG + chr1_1:59283162-59283181 None:intergenic 25.0%
! TAAAGTTGTTTATCCAAACA+AGG - chr1_1:59283275-59283294 Msa0032260:intron 25.0%
! ACAGGAATCAAATGATAATT+TGG - chr1_1:59283725-59283744 Msa0032260:intron 25.0%
! AACTGAAGAAAATTCTGTAT+GGG - chr1_1:59283931-59283950 Msa0032260:intron 25.0%
! AACATTTGATACTTATGCTT+TGG - chr1_1:59284298-59284317 Msa0032260:five_prime_UTR 25.0%
!! TGGCTCAAATTTTAAGAACT+GGG + chr1_1:59280683-59280702 None:intergenic 30.0%
! GTTGATTCAAATTCGATGTA+TGG + chr1_1:59280781-59280800 None:intergenic 30.0%
ATTTGTTTGTGATGCGTAAA+GGG - chr1_1:59280874-59280893 Msa0032260:three_prime_UTR 30.0%
GCTAAGGTAATCAATCTTTA+CGG - chr1_1:59281000-59281019 Msa0032260:three_prime_UTR 30.0%
CATGTTCCAATCATATTCAA+AGG - chr1_1:59281027-59281046 Msa0032260:exon 30.0%
CCAAAACCTTTGAATATGAT+TGG + chr1_1:59281036-59281055 None:intergenic 30.0%
! CCAATCATATTCAAAGGTTT+TGG - chr1_1:59281033-59281052 Msa0032260:CDS 30.0%
!!! CAAAGGTTTTGGAATAGAAA+TGG - chr1_1:59281044-59281063 Msa0032260:CDS 30.0%
!! ATAGGGATTCTCTTTGATTT+TGG + chr1_1:59281072-59281091 None:intergenic 30.0%
AGAAAGTAGCTTATAGCTTA+AGG + chr1_1:59281222-59281241 None:intergenic 30.0%
TGATGTATACATGTATGTGT+GGG + chr1_1:59281531-59281550 None:intergenic 30.0%
GAGAAAGTTTCCTATTTGAA+TGG - chr1_1:59281695-59281714 Msa0032260:intron 30.0%
!! TTATTAGAGAAAGCGTTCAT+CGG - chr1_1:59281922-59281941 Msa0032260:intron 30.0%
TCGGAAGAAAAAGAAATTAG+CGG - chr1_1:59281941-59281960 Msa0032260:intron 30.0%
CATTATTTGAGCTTAACTAC+TGG - chr1_1:59282016-59282035 Msa0032260:intron 30.0%
ATAAGCTATTTATCCAAACG+GGG + chr1_1:59282129-59282148 None:intergenic 30.0%
CTCGATAAGCTATTTATGTT+TGG - chr1_1:59282206-59282225 Msa0032260:intron 30.0%
!! TTTTTACAGCTTTTTAGTCG+TGG + chr1_1:59282341-59282360 None:intergenic 30.0%
TCAAAATAAGCCAATCCAAA+CGG - chr1_1:59283125-59283144 Msa0032260:intron 30.0%
!! TTTATTTTCTGCTTGAGTCA+AGG + chr1_1:59283308-59283327 None:intergenic 30.0%
ATCCTCGAAAATCAATTATG+TGG - chr1_1:59283444-59283463 Msa0032260:intron 30.0%
!! AACCACATAATTGATTTTCG+AGG + chr1_1:59283449-59283468 None:intergenic 30.0%
GGAATCAAATGATAATTTGG+AGG - chr1_1:59283728-59283747 Msa0032260:intron 30.0%
GAACTGAAGAAAATTCTGTA+TGG - chr1_1:59283930-59283949 Msa0032260:intron 30.0%
AAAATTCTGTATGGGAAGTT+TGG - chr1_1:59283939-59283958 Msa0032260:intron 30.0%
! GATTTCTAGGTTACTTTCTA+TGG - chr1_1:59284003-59284022 Msa0032260:intron 30.0%
AAATCAGTCAAAGTTCTATG+AGG + chr1_1:59284037-59284056 None:intergenic 30.0%
TACAATTAAGAGACACAATC+TGG + chr1_1:59284063-59284082 None:intergenic 30.0%
AGATTGTGTCTCTTAATTGT+AGG - chr1_1:59284062-59284081 Msa0032260:CDS 30.0%
TTGTATTCTATCCCAAAGAA+AGG - chr1_1:59284163-59284182 Msa0032260:intron 30.0%
CAATAAAGACTCCTTTCTTT+GGG + chr1_1:59284177-59284196 None:intergenic 30.0%
ACAATAAAGACTCCTTTCTT+TGG + chr1_1:59284178-59284197 None:intergenic 30.0%
GTCTATCAGTAACAAAAATG+TGG - chr1_1:59284196-59284215 Msa0032260:intron 30.0%
!! CTGGCTCAAATTTTAAGAAC+TGG + chr1_1:59280684-59280703 None:intergenic 35.0%
CAGTTCTTAAAATTTGAGCC+AGG - chr1_1:59280682-59280701 Msa0032260:three_prime_UTR 35.0%
TTGAATCAACAAGATGCAAC+AGG - chr1_1:59280791-59280810 Msa0032260:three_prime_UTR 35.0%
CATTTGTTTGTGATGCGTAA+AGG - chr1_1:59280873-59280892 Msa0032260:three_prime_UTR 35.0%
CAGCAGAACATCAACAAATT+CGG - chr1_1:59280931-59280950 Msa0032260:three_prime_UTR 35.0%
AGAACATCAACAAATTCGGA+AGG - chr1_1:59280935-59280954 Msa0032260:three_prime_UTR 35.0%
TGATGAGATCAAAATCGCTA+AGG - chr1_1:59280984-59281003 Msa0032260:three_prime_UTR 35.0%
! CAACAAAAAGCATGTAGCAA+AGG + chr1_1:59281110-59281129 None:intergenic 35.0%
GACTTAAAACCCTATCTGTT+TGG - chr1_1:59281145-59281164 Msa0032260:CDS 35.0%
AAGTAGCTTATAGCTTAAGG+TGG + chr1_1:59281219-59281238 None:intergenic 35.0%
AAATAGCGAATCGCTGATAA+CGG + chr1_1:59281462-59281481 None:intergenic 35.0%
GTGGGAATAAGAATTGTTTG+TGG + chr1_1:59281513-59281532 None:intergenic 35.0%
GTGATGTATACATGTATGTG+TGG + chr1_1:59281532-59281551 None:intergenic 35.0%
ACTCTGTCTTTGTTCATATG+AGG + chr1_1:59281554-59281573 None:intergenic 35.0%
ATTTCCTATCAGGATGATTC+TGG + chr1_1:59281647-59281666 None:intergenic 35.0%
GAATCATCCTGATAGGAAAT+AGG - chr1_1:59281647-59281666 Msa0032260:intron 35.0%
TTGATCAGTTCTATAGTGCT+AGG + chr1_1:59281802-59281821 None:intergenic 35.0%
AGGGGGTCATATATATATAC+TGG - chr1_1:59282950-59282969 Msa0032260:intron 35.0%
TTACCCAAACGCATTTGAAA+AGG - chr1_1:59283071-59283090 Msa0032260:intron 35.0%
! AAGCCTTTTCAAATGCGTTT+GGG + chr1_1:59283077-59283096 None:intergenic 35.0%
! TAAGCCTTTTCAAATGCGTT+TGG + chr1_1:59283078-59283097 None:intergenic 35.0%
CAAAATAAGCCAATCCAAAC+GGG - chr1_1:59283126-59283145 Msa0032260:intron 35.0%
AAAATAAGCCAATCCAAACG+GGG - chr1_1:59283127-59283146 Msa0032260:intron 35.0%
ATAAGCTATCATGGAGAGTT+TGG + chr1_1:59283153-59283172 None:intergenic 35.0%
TGTGATGTCTTTCAACTTCT+CGG - chr1_1:59283555-59283574 Msa0032260:intron 35.0%
TTGCAAAATGCTTAGAAGGA+GGG + chr1_1:59283651-59283670 None:intergenic 35.0%
ATTGCAAAATGCTTAGAAGG+AGG + chr1_1:59283652-59283671 None:intergenic 35.0%
GTCATTGCAAAATGCTTAGA+AGG + chr1_1:59283655-59283674 None:intergenic 35.0%
!! ATGGAGATTTTGTTTGTCAC+AGG - chr1_1:59283707-59283726 Msa0032260:intron 35.0%
GTTAATTCTCACAGATGAAG+AGG - chr1_1:59283764-59283783 Msa0032260:intron 35.0%
TGGAGAATCTATCAATCTTG+AGG - chr1_1:59283959-59283978 Msa0032260:intron 35.0%
AGAATCTATCAATCTTGAGG+AGG - chr1_1:59283962-59283981 Msa0032260:intron 35.0%
! TGCCAATGTTTCTAACTTTC+CGG - chr1_1:59284113-59284132 Msa0032260:intron 35.0%
TTGACCAGTTATTACTAGGT+TGG + chr1_1:59284227-59284246 None:intergenic 35.0%
ACCTAGTAATAACTGGTCAA+CGG - chr1_1:59284227-59284246 Msa0032260:five_prime_UTR 35.0%
CTTGACATATTTGAGCATGT+TGG - chr1_1:59284257-59284276 Msa0032260:five_prime_UTR 35.0%
! AAGCAGAGAAAGAGTGTGAT+GGG + chr1_1:59280708-59280727 None:intergenic 40.0%
!! CGAATTTGTTGATGTTCTGC+TGG + chr1_1:59280933-59280952 None:intergenic 40.0%
AGAAACTGTACGTCTCTGTT+TGG + chr1_1:59281489-59281508 None:intergenic 40.0%
! TATCAGGATGATTCTGGTTG+TGG + chr1_1:59281641-59281660 None:intergenic 40.0%
ACAACCAGAATCATCCTGAT+AGG - chr1_1:59281640-59281659 Msa0032260:intron 40.0%
! TCTGGTTCCTATTTCCTATC+AGG + chr1_1:59281657-59281676 None:intergenic 40.0%
TGCTAGGAGTTCAAAGTAAG+AGG + chr1_1:59281786-59281805 None:intergenic 40.0%
!! AAAGGTAAAGCGAGTATCGA+AGG - chr1_1:59282930-59282949 Msa0032260:intron 40.0%
!! AAGGTAAAGCGAGTATCGAA+GGG - chr1_1:59282931-59282950 Msa0032260:intron 40.0%
AGCTTACCACATAGCTTATG+CGG + chr1_1:59282984-59283003 None:intergenic 40.0%
TTGCTAGGTTTGAGGAAAAG+TGG - chr1_1:59283390-59283409 Msa0032260:intron 40.0%
ACACGACACACATGAGAAAA+GGG + chr1_1:59283482-59283501 None:intergenic 40.0%
TGTCTTTCAACTTCTCGGTT+TGG - chr1_1:59283560-59283579 Msa0032260:intron 40.0%
TGCAAAATGCTTAGAAGGAG+GGG + chr1_1:59283650-59283669 None:intergenic 40.0%
AGGTCGTTCGGTTTCAAATA+GGG - chr1_1:59283784-59283803 Msa0032260:intron 40.0%
! CCTCAAGCTTTTCCAATTTC+TGG + chr1_1:59283878-59283897 None:intergenic 40.0%
CCAGAAATTGGAAAAGCTTG+AGG - chr1_1:59283875-59283894 Msa0032260:intron 40.0%
GAAATTGGAAAAGCTTGAGG+AGG - chr1_1:59283878-59283897 Msa0032260:intron 40.0%
CATTGGCAAACAGTGAAATG+AGG + chr1_1:59284101-59284120 None:intergenic 40.0%
AGCCGGAAAGTTAGAAACAT+TGG + chr1_1:59284118-59284137 None:intergenic 40.0%
ATCTCACAGAATGAACAAGC+CGG + chr1_1:59284135-59284154 None:intergenic 40.0%
CGATCCAACCTAGTAATAAC+TGG - chr1_1:59284220-59284239 Msa0032260:five_prime_UTR 40.0%
ACCGTTGACCAGTTATTACT+AGG + chr1_1:59284231-59284250 None:intergenic 40.0%
! GAAGCAGAGAAAGAGTGTGA+TGG + chr1_1:59280709-59280728 None:intergenic 45.0%
ACACTCTTTCTCTGCTTCTC+AGG - chr1_1:59280711-59280730 Msa0032260:three_prime_UTR 45.0%
TTTCTCTGCTTCTCAGGTTC+TGG - chr1_1:59280717-59280736 Msa0032260:three_prime_UTR 45.0%
TGTTTGTGATGCGTAAAGGG+AGG - chr1_1:59280877-59280896 Msa0032260:three_prime_UTR 45.0%
ATCCGAAACGGAAGTTACCT+GGG - chr1_1:59280903-59280922 Msa0032260:three_prime_UTR 45.0%
! TGTGGCTTGCCAAACAGATA+GGG + chr1_1:59281157-59281176 None:intergenic 45.0%
! ATGTGGCTTGCCAAACAGAT+AGG + chr1_1:59281158-59281177 None:intergenic 45.0%
! AGGATGATTCTGGTTGTGGT+GGG + chr1_1:59281637-59281656 None:intergenic 45.0%
TTCCCGCAAAAGAACATGCT+TGG - chr1_1:59281890-59281909 Msa0032260:intron 45.0%
TCCCGCAAAAGAACATGCTT+GGG - chr1_1:59281891-59281910 Msa0032260:intron 45.0%
TAAGCGCTTGAGAGACTGTT+TGG - chr1_1:59282041-59282060 Msa0032260:intron 45.0%
AAGCGCTTGAGAGACTGTTT+GGG - chr1_1:59282042-59282061 Msa0032260:intron 45.0%
ATTTCCATAAAGGCCCCGTT+TGG - chr1_1:59282113-59282132 Msa0032260:intron 45.0%
TTATCCAAACGGGGCCTTTA+TGG + chr1_1:59282120-59282139 None:intergenic 45.0%
!! AGGTAAAGCGAGTATCGAAG+GGG - chr1_1:59282932-59282951 Msa0032260:intron 45.0%
TAAGCTCCGCATAAGCTATG+TGG - chr1_1:59282975-59282994 Msa0032260:intron 45.0%
! TCAAGGAGATCTGCCTTGTT+TGG + chr1_1:59283291-59283310 None:intergenic 45.0%
CAAACCTAGCAAAGAACTCG+AGG + chr1_1:59283382-59283401 None:intergenic 45.0%
CGAGTTCTTTGCTAGGTTTG+AGG - chr1_1:59283382-59283401 Msa0032260:intron 45.0%
CACACGACACACATGAGAAA+AGG + chr1_1:59283483-59283502 None:intergenic 45.0%
TCACAGATGAAGAGGTCGTT+CGG - chr1_1:59283772-59283791 Msa0032260:intron 45.0%
GAGGTCGTTCGGTTTCAAAT+AGG - chr1_1:59283783-59283802 Msa0032260:intron 45.0%
GGTCGTTCGGTTTCAAATAG+GGG - chr1_1:59283785-59283804 Msa0032260:intron 45.0%
GGTATTTGCTCATGTGCCTA+AGG - chr1_1:59283809-59283828 Msa0032260:intron 45.0%
CTGCTCTCTACTTCATCCTT+AGG + chr1_1:59283828-59283847 None:intergenic 45.0%
CTAAGGATGAAGTAGAGAGC+AGG - chr1_1:59283826-59283845 Msa0032260:intron 45.0%
AGAAGCGACAAGCCAGAAAT+TGG - chr1_1:59283863-59283882 Msa0032260:intron 45.0%
TTCAGACATCTGAGCAACCA+CGG + chr1_1:59283913-59283932 None:intergenic 45.0%
TTGTGATGCGTAAAGGGAGG+AGG - chr1_1:59280880-59280899 Msa0032260:three_prime_UTR 50.0%
AAAGGGAGGAGGATCCGAAA+CGG - chr1_1:59280891-59280910 Msa0032260:three_prime_UTR 50.0%
GATCCGAAACGGAAGTTACC+TGG - chr1_1:59280902-59280921 Msa0032260:three_prime_UTR 50.0%
CTCCCAGGTAACTTCCGTTT+CGG + chr1_1:59280908-59280927 None:intergenic 50.0%
!! GCGAATCGCTGATAACGGAT+AGG + chr1_1:59281457-59281476 None:intergenic 50.0%
! CAGGATGATTCTGGTTGTGG+TGG + chr1_1:59281638-59281657 None:intergenic 50.0%
! CCCCAAGCATGTTCTTTTGC+GGG + chr1_1:59281895-59281914 None:intergenic 50.0%
CCCGCAAAAGAACATGCTTG+GGG - chr1_1:59281892-59281911 Msa0032260:intron 50.0%
! CCCCCAAGCATGTTCTTTTG+CGG + chr1_1:59281896-59281915 None:intergenic 50.0%
CCGCAAAAGAACATGCTTGG+GGG - chr1_1:59281893-59281912 Msa0032260:intron 50.0%
AAGAACATGCTTGGGGGTGA+TGG - chr1_1:59281899-59281918 Msa0032260:intron 50.0%
!! GGTAAAGCGAGTATCGAAGG+GGG - chr1_1:59282933-59282952 Msa0032260:intron 50.0%
AAGAACTCGAGGTAGGCAAC+AGG + chr1_1:59283371-59283390 None:intergenic 50.0%
CCTAGCAAAGAACTCGAGGT+AGG + chr1_1:59283378-59283397 None:intergenic 50.0%
CCTACCTCGAGTTCTTTGCT+AGG - chr1_1:59283375-59283394 Msa0032260:intron 50.0%
CGTTCGGTTTCAAATAGGGG+AGG - chr1_1:59283788-59283807 Msa0032260:intron 50.0%
TGAGGAGGAGAAACAATCCG+TGG - chr1_1:59283893-59283912 Msa0032260:intron 50.0%
!! GAGAAAGAGTGTGATGGGCC+TGG + chr1_1:59280703-59280722 None:intergenic 55.0%
! GGTTCTGGTCAAGCTTGCAG+TGG - chr1_1:59280732-59280751 Msa0032260:three_prime_UTR 55.0%
CGAAACGGAAGTTACCTGGG+AGG - chr1_1:59280906-59280925 Msa0032260:three_prime_UTR 55.0%
GAGTTTGGCCCCGTTTGGAT+TGG + chr1_1:59283138-59283157 None:intergenic 55.0%
ATGGAGAGTTTGGCCCCGTT+TGG + chr1_1:59283143-59283162 None:intergenic 55.0%
GTGTGTCGTGTGTGTCTGAG+AGG - chr1_1:59283491-59283510 Msa0032260:intron 55.0%
GATGTTCTGCTGGTCCTCCC+AGG + chr1_1:59280923-59280942 None:intergenic 60.0%
GCGGGAAGTCTAGCACATCG+AGG + chr1_1:59281877-59281896 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 59280670 59284348 59280670 ID=Msa0032260;Name=Msa0032260
chr1_1 mRNA 59280670 59284348 59280670 ID=Msa0032260-mRNA-1;Parent=Msa0032260;Name=Msa0032260-mRNA-1;_AED=0.01;_eAED=0.01;_QI=134|1|1|1|1|1|3|359|126
chr1_1 exon 59280670 59281289 59280670 ID=Msa0032260-mRNA-1:exon:18265;Parent=Msa0032260-mRNA-1
chr1_1 exon 59284013 59284123 59284013 ID=Msa0032260-mRNA-1:exon:18264;Parent=Msa0032260-mRNA-1
chr1_1 exon 59284206 59284348 59284206 ID=Msa0032260-mRNA-1:exon:18263;Parent=Msa0032260-mRNA-1
chr1_1 five_prime_UTR 59284215 59284348 59284215 ID=Msa0032260-mRNA-1:five_prime_utr;Parent=Msa0032260-mRNA-1
chr1_1 CDS 59284206 59284214 59284206 ID=Msa0032260-mRNA-1:cds;Parent=Msa0032260-mRNA-1
chr1_1 CDS 59284013 59284123 59284013 ID=Msa0032260-mRNA-1:cds;Parent=Msa0032260-mRNA-1
chr1_1 CDS 59281029 59281289 59281029 ID=Msa0032260-mRNA-1:cds;Parent=Msa0032260-mRNA-1
chr1_1 three_prime_UTR 59280670 59281028 59280670 ID=Msa0032260-mRNA-1:three_prime_utr;Parent=Msa0032260-mRNA-1
Gene Sequence

>Msa0032260

ATGCAACAGGGAGGAGGATCCGAAACGGAAGTTACCTGGGAGGACCAGCAGAACATCAACAAATTCGGAAGGTTGAATAATCGCTTACACGAGCTACATGATGAGATCAAAATCGCTAAGGAATCAAATGATAATTTGGAGGATGCAAGCAATGAGTTAATTCTCACAGATGAAGAGGTCGTTCGGTTTCAAATAGGGGAGGTATTTGCTCATGTGCCTAAGGATGAAGTAGAGAGCAGGATAGAACAGATGCAAGAAGCGACAAGCCAGAAATTGGAAAAGCTTGAGGAGGAGAAACAATCCGTGGTTGCTCAGATGTCTGAACTGAAGAAAATTCTGTATGGGAAGTTTGGAGAATCTATCAATCTTGAGGAGGATTAG

Protein sequence

>Msa0032260

MQQGGGSETEVTWEDQQNINKFGRLNNRLHELHDEIKIAKESNDNLEDASNELILTDEEVVRFQIGEVFAHVPKDEVESRIEQMQEATSQKLEKLEEEKQSVVAQMSELKKILYGKFGESINLEED*