AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0568820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568820 MtrunA17_Chr8g0383761 98.925 93 1 0 1 93 1 93 2.55e-63 186
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568820 AT5G09830.1 87.342 79 10 0 3 81 2 80 7.48e-47 145

Find 50 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGAAAGAATTAAAATTT+AGG 0.183954 4_1:+70448243 None:intergenic
CAGAACAATTTGAAGGAAAA+AGG 0.220014 4_1:-70448725 Msa0568820:CDS
AAGATGGGAAGGGTTGAGTT+TGG 0.324170 4_1:+70450466 None:intergenic
ATATATCATGACAGCGAGTT+TGG 0.342289 4_1:-70448050 Msa0568820:three_prime_UTR
AAGTTAAGACGCGAATATAT+AGG 0.397150 4_1:-70450586 Msa0568820:five_prime_UTR
CGGCAGAAAGGTCAGAGAAA+TGG 0.397569 4_1:-70450525 Msa0568820:exon
TTAACCTTGCTATAGTCATC+TGG 0.408338 4_1:-70448129 Msa0568820:three_prime_UTR
ACTCGCTGTCATGATATATC+AGG 0.415932 4_1:+70448054 None:intergenic
ATATAGGAGTATTTCACAAA+AGG 0.418863 4_1:-70450570 Msa0568820:five_prime_UTR
TATAGGAGTATTTCACAAAA+GGG 0.429297 4_1:-70450569 Msa0568820:five_prime_UTR
ACAAAGTGCTTGACTTTCAG+TGG 0.429776 4_1:-70448439 Msa0568820:three_prime_UTR
AAATCCTTACAATATGTTGC+TGG 0.434932 4_1:-70448538 Msa0568820:three_prime_UTR
AAACAATGCATGACTTATGA+AGG 0.436982 4_1:-70448312 Msa0568820:three_prime_UTR
ATTGTTTCAGAACAATTTGA+AGG 0.440449 4_1:-70448732 Msa0568820:CDS
CAGGAAGTAACTGATATATC+TGG 0.443253 4_1:-70448889 Msa0568820:CDS
TCTAGGCCGCAGAATTTGAT+TGG 0.445746 4_1:+70448583 None:intergenic
GGCCGCAGAATTTGATTGGT+TGG 0.446170 4_1:+70448587 None:intergenic
GGCAGAAAGGTCAGAGAAAT+GGG 0.453846 4_1:-70450524 Msa0568820:exon
TTCCACGTAAAGAATGAACT+TGG 0.476934 4_1:+70448225 None:intergenic
GTGAACGACAAAATAGGATA+AGG 0.493589 4_1:-70450652 None:intergenic
ACTGCCAGCAACATATTGTA+AGG 0.497239 4_1:+70448534 None:intergenic
CTCTTTCATTTCCTCCTCCA+AGG 0.499465 4_1:+70448671 None:intergenic
TATGTTGCTGGCAGTATTTG+TGG 0.513595 4_1:-70448526 Msa0568820:three_prime_UTR
TTATAAATATTATATGCTCT+AGG 0.527765 4_1:+70448566 None:intergenic
AATGGTGAATGCTGCCTTGG+AGG 0.528246 4_1:-70448685 Msa0568820:CDS
ATCGATCCGCGTGCGAGCAA+CGG 0.537897 4_1:-70450610 Msa0568820:five_prime_UTR
GAAAGAAAAGCTTACAAGAT+GGG 0.541620 4_1:+70450451 None:intergenic
TCGAATGGTGAATGCTGCCT+TGG 0.542792 4_1:-70448688 Msa0568820:CDS
CAAAGTGCTTGACTTTCAGT+GGG 0.546228 4_1:-70448438 Msa0568820:three_prime_UTR
GAAAAGCTTACAAGATGGGA+AGG 0.546986 4_1:+70450455 None:intergenic
GAAATCGAAGAACGGCAGAA+AGG 0.548954 4_1:-70450537 Msa0568820:five_prime_UTR
GACATAGCGACACTCACTAA+AGG 0.559403 4_1:+70448076 None:intergenic
GTATTGCTCAATAGAGATGA+AGG 0.567760 4_1:-70448376 Msa0568820:three_prime_UTR
CAGAGAAATGGGTGTGACAA+AGG 0.570077 4_1:-70450513 Msa0568820:exon
AACTTGCCGTTGCTCGCACG+CGG 0.586487 4_1:+70450604 None:intergenic
TTCCAAGTTCATTCTTTACG+TGG 0.590894 4_1:-70448227 Msa0568820:three_prime_UTR
GGTGAATGCTGCCTTGGAGG+AGG 0.603126 4_1:-70448682 Msa0568820:CDS
AACTTGTTGACTTGAATGCG+TGG 0.616658 4_1:-70448200 Msa0568820:three_prime_UTR
GAAGTAACTGATATATCTGG+AGG 0.618293 4_1:-70448886 Msa0568820:CDS
GCTATTGGAAAGGCATCGAA+TGG 0.630188 4_1:-70448703 Msa0568820:CDS
GTCCAACCAATCAAATTCTG+CGG 0.635925 4_1:-70448589 Msa0568820:CDS
ACTTGTTGACTTGAATGCGT+GGG 0.636422 4_1:-70448199 Msa0568820:three_prime_UTR
ACCTTGCTATAGTCATCTGG+AGG 0.648282 4_1:-70448126 Msa0568820:three_prime_UTR
AAGCTGTAACTCCAGAACAG+TGG 0.652784 4_1:-70448626 Msa0568820:CDS
AAAAGCTTACAAGATGGGAA+GGG 0.654898 4_1:+70450456 None:intergenic
AGTGCAACATAAAATTTGAG+TGG 0.662237 4_1:+70448477 None:intergenic
AAGTAACTGATATATCTGGA+GGG 0.667213 4_1:-70448885 Msa0568820:intron
TCCTCCAGATGACTATAGCA+AGG 0.675835 4_1:+70448125 None:intergenic
TTACACGAGAAATCGAAGAA+CGG 0.723135 4_1:-70450545 Msa0568820:five_prime_UTR
AAAGTGCTTGACTTTCAGTG+GGG 0.752919 4_1:-70448437 Msa0568820:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTATTTTTTTATTTTTGT+TGG - chr4_1:70449594-70449613 Msa0568820:intron 10.0%
!! ATGCAAAAAAAAAAAAAACA+TGG + chr4_1:70448324-70448343 None:intergenic 15.0%
!! TTATAAATATTATATGCTCT+AGG + chr4_1:70450120-70450139 None:intergenic 15.0%
!!! TTTGAATTTTGGATACATTT+GGG + chr4_1:70448527-70448546 None:intergenic 20.0%
!!! TTTTGAATTTTGGATACATT+TGG + chr4_1:70448528-70448547 None:intergenic 20.0%
!! ATTGAATGTATCTATTAGTT+TGG + chr4_1:70448588-70448607 None:intergenic 20.0%
!! TTAACATGATCAGAATTTAA+TGG - chr4_1:70448876-70448895 Msa0568820:intron 20.0%
!! TCAAAATAACTATACAAAAG+TGG - chr4_1:70448975-70448994 Msa0568820:intron 20.0%
!! AAAAGTAAAAAGGAAGTAAA+GGG + chr4_1:70449071-70449090 None:intergenic 20.0%
!! TACTGTCAAATTTAGTAAAA+AGG + chr4_1:70449110-70449129 None:intergenic 20.0%
!!! TGATTTAATTAGTTTTACTG+TGG - chr4_1:70449219-70449238 Msa0568820:intron 20.0%
!!! GATTTAATTAGTTTTACTGT+GGG - chr4_1:70449220-70449239 Msa0568820:intron 20.0%
!!! ATTTAATTAGTTTTACTGTG+GGG - chr4_1:70449221-70449240 Msa0568820:intron 20.0%
!! AACTTTAACATATTTCACTT+AGG + chr4_1:70449533-70449552 None:intergenic 20.0%
!! TAAGTGAAATATGTTAAAGT+TGG - chr4_1:70449532-70449551 Msa0568820:intron 20.0%
!! AAAAACATAAGAAATCCAAA+AGG + chr4_1:70449759-70449778 None:intergenic 20.0%
!!! TTTTTTTTTGTTTGTGTTTC+AGG - chr4_1:70449775-70449794 Msa0568820:intron 20.0%
!! CTAATAAAAAATGTGTTAGA+TGG + chr4_1:70449837-70449856 None:intergenic 20.0%
!! CTTGGAAAGAATTAAAATTT+AGG + chr4_1:70450443-70450462 None:intergenic 20.0%
!!! ATATAGGAGTATTTCACAAA+AGG - chr4_1:70448113-70448132 Msa0568820:three_prime_UTR 25.0%
!!! TATAGGAGTATTTCACAAAA+GGG - chr4_1:70448114-70448133 Msa0568820:three_prime_UTR 25.0%
! TGCACAGTTCAAAATAATTA+GGG + chr4_1:70448409-70448428 None:intergenic 25.0%
! TTGCACAGTTCAAAATAATT+AGG + chr4_1:70448410-70448429 None:intergenic 25.0%
!!! TCGATGATGTTTTTGAATTT+TGG + chr4_1:70448538-70448557 None:intergenic 25.0%
!!! TTGTAATTTTGATACAACCA+AGG - chr4_1:70448677-70448696 Msa0568820:CDS 25.0%
!!! TGTAATTTTGATACAACCAA+GGG - chr4_1:70448678-70448697 Msa0568820:CDS 25.0%
! TGCATGAATATTGAATACAA+CGG + chr4_1:70448720-70448739 None:intergenic 25.0%
! TTGTATTCAATATTCATGCA+AGG - chr4_1:70448720-70448739 Msa0568820:CDS 25.0%
! AAATAACTATACAAAAGTGG+CGG - chr4_1:70448978-70448997 Msa0568820:intron 25.0%
! CAAAAGTAAAAAGGAAGTAA+AGG + chr4_1:70449072-70449091 None:intergenic 25.0%
! GTCGATTATCAAAAGTAAAA+AGG + chr4_1:70449081-70449100 None:intergenic 25.0%
!!! CAAGTTATGTTAGTTTTTCA+GGG - chr4_1:70449323-70449342 Msa0568820:intron 25.0%
!!! AAGTTCTTTTGAGAAAAAGA+GGG + chr4_1:70449461-70449480 None:intergenic 25.0%
!!! AAAGTTCTTTTGAGAAAAAG+AGG + chr4_1:70449462-70449481 None:intergenic 25.0%
!! TCTTTTTCTCAAAAGAACTT+TGG - chr4_1:70449461-70449480 Msa0568820:intron 25.0%
! ATTGTTTCAGAACAATTTGA+AGG - chr4_1:70449951-70449970 Msa0568820:intron 25.0%
AAGTTAAGACGCGAATATAT+AGG - chr4_1:70448097-70448116 Msa0568820:three_prime_UTR 30.0%
GAAAGAAAAGCTTACAAGAT+GGG + chr4_1:70448235-70448254 None:intergenic 30.0%
AACATGGTGTGTTGAAATTA+AGG + chr4_1:70448308-70448327 None:intergenic 30.0%
ATCATAGTTGAGTATGCTAA+TGG + chr4_1:70448354-70448373 None:intergenic 30.0%
CATACTCAACTATGATGTTT+AGG - chr4_1:70448358-70448377 Msa0568820:three_prime_UTR 30.0%
AAAATAATTAGGGCTAAGGA+TGG + chr4_1:70448399-70448418 None:intergenic 30.0%
GTTCAAAATAATTAGGGCTA+AGG + chr4_1:70448403-70448422 None:intergenic 30.0%
! CTTACACAATTAGGGATTTT+TGG + chr4_1:70448487-70448506 None:intergenic 30.0%
AAATCCCTAATTGTGTAAGA+CGG - chr4_1:70448488-70448507 Msa0568820:three_prime_UTR 30.0%
! AAACATCATCGAGTTTGTTT+CGG - chr4_1:70448546-70448565 Msa0568820:three_prime_UTR 30.0%
GCATGAATATTGAATACAAC+GGG + chr4_1:70448719-70448738 None:intergenic 30.0%
!! ACCCTAATAGTTGTTATTTG+TGG - chr4_1:70448743-70448762 Msa0568820:CDS 30.0%
GCCACAAATAACAACTATTA+GGG + chr4_1:70448747-70448766 None:intergenic 30.0%
AGCCACAAATAACAACTATT+AGG + chr4_1:70448748-70448767 None:intergenic 30.0%
ACATTACAAAGCCATTAAGT+TGG - chr4_1:70449252-70449271 Msa0568820:intron 30.0%
!!! GCAAGTTATGTTAGTTTTTC+AGG - chr4_1:70449322-70449341 Msa0568820:intron 30.0%
!! AGTTCTTTTGAGAAAAAGAG+GGG + chr4_1:70449460-70449479 None:intergenic 30.0%
TCTTCAACATATGTAACACT+AGG + chr4_1:70449506-70449525 None:intergenic 30.0%
AGAAAATGGTCAAACTTCTA+AGG - chr4_1:70449571-70449590 Msa0568820:intron 30.0%
GAAAATGGTCAAACTTCTAA+GGG - chr4_1:70449572-70449591 Msa0568820:intron 30.0%
AAACTGATAGATTGAAGGTT+AGG + chr4_1:70449634-70449653 None:intergenic 30.0%
CTGTAAAACTGATAGATTGA+AGG + chr4_1:70449639-70449658 None:intergenic 30.0%
AAGGGTCAAATACAAATGAA+AGG + chr4_1:70449727-70449746 None:intergenic 30.0%
TCCAAAAGGAAAAAAGAGAA+GGG + chr4_1:70449745-70449764 None:intergenic 30.0%
ATCCAAAAGGAAAAAAGAGA+AGG + chr4_1:70449746-70449765 None:intergenic 30.0%
AAGTAACTGATATATCTGGA+GGG - chr4_1:70449798-70449817 Msa0568820:intron 30.0%
ACAATCTTATGATTCCATGT+TGG - chr4_1:70449894-70449913 Msa0568820:intron 30.0%
GATTCCATGTTGGTATTATT+AGG - chr4_1:70449904-70449923 Msa0568820:intron 30.0%
CAGAACAATTTGAAGGAAAA+AGG - chr4_1:70449958-70449977 Msa0568820:intron 30.0%
ATTTGAAGGAAAAAGGCTAT+TGG - chr4_1:70449965-70449984 Msa0568820:intron 30.0%
AAATCCTTACAATATGTTGC+TGG - chr4_1:70450145-70450164 Msa0568820:intron 30.0%
AGTGCAACATAAAATTTGAG+TGG + chr4_1:70450209-70450228 None:intergenic 30.0%
AAACAATGCATGACTTATGA+AGG - chr4_1:70450371-70450390 Msa0568820:intron 30.0%
!! TCCTTTTCATTTTTCTTCTG+AGG - chr4_1:70450509-70450528 Msa0568820:CDS 30.0%
!! CCTTTTCATTTTTCTTCTGA+GGG - chr4_1:70450510-70450529 Msa0568820:exon 30.0%
TTACACGAGAAATCGAAGAA+CGG - chr4_1:70448138-70448157 Msa0568820:three_prime_UTR 35.0%
AAAAGCTTACAAGATGGGAA+GGG + chr4_1:70448230-70448249 None:intergenic 35.0%
GGAAAGAAAAGCTTACAAGA+TGG + chr4_1:70448236-70448255 None:intergenic 35.0%
CAAAGGAAAGGAACGAAATT+GGG + chr4_1:70448257-70448276 None:intergenic 35.0%
TCAAAGGAAAGGAACGAAAT+TGG + chr4_1:70448258-70448277 None:intergenic 35.0%
! AAGAGCGTAAATCAAAGGAA+AGG + chr4_1:70448269-70448288 None:intergenic 35.0%
! GTGAAAAGAGCGTAAATCAA+AGG + chr4_1:70448274-70448293 None:intergenic 35.0%
! GTGTCTTAGGTTAGTTAGTT+TGG + chr4_1:70448613-70448632 None:intergenic 35.0%
TAACTAACCTAAGACACTTG+AGG - chr4_1:70448616-70448635 Msa0568820:CDS 35.0%
TGAATATTGAATACAACGGG+CGG + chr4_1:70448716-70448735 None:intergenic 35.0%
!! AGTTGTTATTTGTGGCTATC+TGG - chr4_1:70448751-70448770 Msa0568820:CDS 35.0%
TTGAAACTGATTGTGTGATG+TGG + chr4_1:70448959-70448978 None:intergenic 35.0%
ATTGGATGTCAGTGTAAAAC+TGG - chr4_1:70449026-70449045 Msa0568820:intron 35.0%
TGTAAATAGGGCCAACTTAA+TGG + chr4_1:70449266-70449285 None:intergenic 35.0%
!! AGCTAAAGTTTTCAAGCAAC+AGG + chr4_1:70449362-70449381 None:intergenic 35.0%
CTTCATGCTGAAAGAACTTT+AGG - chr4_1:70449408-70449427 Msa0568820:intron 35.0%
CTTCATGCTGAAAGAGAAAA+TGG - chr4_1:70449557-70449576 Msa0568820:intron 35.0%
!!! AAAGGTTCACATTTTCGAGT+TGG + chr4_1:70449709-70449728 None:intergenic 35.0%
!!! ACCCTTCTCTTTTTTCCTTT+TGG - chr4_1:70449741-70449760 Msa0568820:intron 35.0%
CAGGAAGTAACTGATATATC+TGG - chr4_1:70449794-70449813 Msa0568820:intron 35.0%
GAAGTAACTGATATATCTGG+AGG - chr4_1:70449797-70449816 Msa0568820:intron 35.0%
AGATACAAGCGACAAGTATA+CGG + chr4_1:70449873-70449892 None:intergenic 35.0%
CACACCTAATAATACCAACA+TGG + chr4_1:70449911-70449930 None:intergenic 35.0%
CATGTTGGTATTATTAGGTG+TGG - chr4_1:70449909-70449928 Msa0568820:intron 35.0%
AAGGAAAAAGGCTATTGGAA+AGG - chr4_1:70449970-70449989 Msa0568820:intron 35.0%
! TGCTCTCTTTTGTACTTTCT+TGG - chr4_1:70450284-70450303 Msa0568820:intron 35.0%
! GCTCTCTTTTGTACTTTCTT+GGG - chr4_1:70450285-70450304 Msa0568820:intron 35.0%
GTATTGCTCAATAGAGATGA+AGG - chr4_1:70450307-70450326 Msa0568820:intron 35.0%
TTCCAAGTTCATTCTTTACG+TGG - chr4_1:70450456-70450475 Msa0568820:intron 35.0%
TTCCACGTAAAGAATGAACT+TGG + chr4_1:70450461-70450480 None:intergenic 35.0%
CCCTCAGAAGAAAAATGAAA+AGG + chr4_1:70450513-70450532 None:intergenic 35.0%
! TTAACCTTGCTATAGTCATC+TGG - chr4_1:70450554-70450573 Msa0568820:five_prime_UTR 35.0%
ATATATCATGACAGCGAGTT+TGG - chr4_1:70450633-70450652 Msa0568820:five_prime_UTR 35.0%
GAAAAGCTTACAAGATGGGA+AGG + chr4_1:70448231-70448250 None:intergenic 40.0%
TTTGGATCTCCAATGCTAAG+TGG + chr4_1:70448469-70448488 None:intergenic 40.0%
GACACCGTCTTACACAATTA+GGG + chr4_1:70448495-70448514 None:intergenic 40.0%
TGACACCGTCTTACACAATT+AGG + chr4_1:70448496-70448515 None:intergenic 40.0%
ATTCAGTCCTCAAGTGTCTT+AGG + chr4_1:70448626-70448645 None:intergenic 40.0%
AGAATTTAATGGCTGTGCAC+TGG - chr4_1:70448887-70448906 Msa0568820:CDS 40.0%
GACAGTCTCTCATTAGATGT+CGG + chr4_1:70448930-70448949 None:intergenic 40.0%
GCAACGTAGTGAATTCACAT+TGG - chr4_1:70449008-70449027 Msa0568820:intron 40.0%
ACCCTGCAGATGTGTAAATA+GGG + chr4_1:70449278-70449297 None:intergenic 40.0%
TACCCTGCAGATGTGTAAAT+AGG + chr4_1:70449279-70449298 None:intergenic 40.0%
!! AAGTTTTCAAGCAACAGGTC+CGG + chr4_1:70449357-70449376 None:intergenic 40.0%
AAGTAGCCAAGTAGATGGTT+CGG + chr4_1:70449391-70449410 None:intergenic 40.0%
!!! TGCTGTTTTTTCCACTGTTC+TGG + chr4_1:70450071-70450090 None:intergenic 40.0%
GTCCAACCAATCAAATTCTG+CGG - chr4_1:70450094-70450113 Msa0568820:intron 40.0%
ACTGCCAGCAACATATTGTA+AGG + chr4_1:70450152-70450171 None:intergenic 40.0%
TATGTTGCTGGCAGTATTTG+TGG - chr4_1:70450157-70450176 Msa0568820:intron 40.0%
! ACAAAGTGCTTGACTTTCAG+TGG - chr4_1:70450244-70450263 Msa0568820:intron 40.0%
! CAAAGTGCTTGACTTTCAGT+GGG - chr4_1:70450245-70450264 Msa0568820:intron 40.0%
! AAAGTGCTTGACTTTCAGTG+GGG - chr4_1:70450246-70450265 Msa0568820:intron 40.0%
!! AACTTGTTGACTTGAATGCG+TGG - chr4_1:70450483-70450502 Msa0568820:CDS 40.0%
!! ACTTGTTGACTTGAATGCGT+GGG - chr4_1:70450484-70450503 Msa0568820:CDS 40.0%
ACTCGCTGTCATGATATATC+AGG + chr4_1:70450632-70450651 None:intergenic 40.0%
GAAATCGAAGAACGGCAGAA+AGG - chr4_1:70448146-70448165 Msa0568820:three_prime_UTR 45.0%
GGCAGAAAGGTCAGAGAAAT+GGG - chr4_1:70448159-70448178 Msa0568820:three_prime_UTR 45.0%
CAGAGAAATGGGTGTGACAA+AGG - chr4_1:70448170-70448189 Msa0568820:three_prime_UTR 45.0%
AAGATGGGAAGGGTTGAGTT+TGG + chr4_1:70448220-70448239 None:intergenic 45.0%
! TGCTTCATGCCACTTAGCAT+TGG - chr4_1:70448457-70448476 Msa0568820:three_prime_UTR 45.0%
! GACTCGTGAAGTTTTCACAC+TGG - chr4_1:70448840-70448859 Msa0568820:intron 45.0%
GCCCTATTTACACATCTGCA+GGG - chr4_1:70449274-70449293 Msa0568820:intron 45.0%
!!! GTTTTTCAGGGTTCGAACTC+CGG - chr4_1:70449335-70449354 Msa0568820:intron 45.0%
CATCAACCGAACCATCTACT+TGG - chr4_1:70449382-70449401 Msa0568820:intron 45.0%
GCATGAAGTAGCCAAGTAGA+TGG + chr4_1:70449396-70449415 None:intergenic 45.0%
TACAAGCGACAAGTATACGG+TGG + chr4_1:70449870-70449889 None:intergenic 45.0%
!! GCTATTGGAAAGGCATCGAA+TGG - chr4_1:70449980-70449999 Msa0568820:intron 45.0%
CTCTTTCATTTCCTCCTCCA+AGG + chr4_1:70450015-70450034 None:intergenic 45.0%
AAGCTGTAACTCCAGAACAG+TGG - chr4_1:70450057-70450076 Msa0568820:intron 45.0%
TCTAGGCCGCAGAATTTGAT+TGG + chr4_1:70450103-70450122 None:intergenic 45.0%
! ACCTTGCTATAGTCATCTGG+AGG - chr4_1:70450557-70450576 Msa0568820:five_prime_UTR 45.0%
TCCTCCAGATGACTATAGCA+AGG + chr4_1:70450561-70450580 None:intergenic 45.0%
GACATAGCGACACTCACTAA+AGG + chr4_1:70450610-70450629 None:intergenic 45.0%
CGGCAGAAAGGTCAGAGAAA+TGG - chr4_1:70448158-70448177 Msa0568820:three_prime_UTR 50.0%
GGCCCTATTTACACATCTGC+AGG - chr4_1:70449273-70449292 Msa0568820:intron 50.0%
TCGAATGGTGAATGCTGCCT+TGG - chr4_1:70449995-70450014 Msa0568820:intron 50.0%
AATGGTGAATGCTGCCTTGG+AGG - chr4_1:70449998-70450017 Msa0568820:intron 50.0%
GGCCGCAGAATTTGATTGGT+TGG + chr4_1:70450099-70450118 None:intergenic 50.0%
! GCGGTGTCAATGTAGTCCCT+TGG + chr4_1:70448697-70448716 None:intergenic 55.0%
ATACAAAAGTGGCGGCGACG+TGG - chr4_1:70448986-70449005 Msa0568820:intron 55.0%
ATCGATCCGCGTGCGAGCAA+CGG - chr4_1:70448073-70448092 Msa0568820:three_prime_UTR 60.0%
AACTTGCCGTTGCTCGCACG+CGG + chr4_1:70448082-70448101 None:intergenic 60.0%
GGTGAATGCTGCCTTGGAGG+AGG - chr4_1:70450001-70450020 Msa0568820:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 70448046 70450659 70448046 ID=Msa0568820;Name=Msa0568820
chr4_1 mRNA 70448046 70450659 70448046 ID=Msa0568820-mRNA-1;Parent=Msa0568820;Name=Msa0568820-mRNA-1;_AED=0.20;_eAED=0.20;_QI=131|1|1|1|1|1|3|538|93
chr4_1 exon 70448046 70448779 70448046 ID=Msa0568820-mRNA-1:exon:23793;Parent=Msa0568820-mRNA-1
chr4_1 exon 70448886 70448908 70448886 ID=Msa0568820-mRNA-1:exon:23792;Parent=Msa0568820-mRNA-1
chr4_1 exon 70450466 70450659 70450466 ID=Msa0568820-mRNA-1:exon:23791;Parent=Msa0568820-mRNA-1
chr4_1 five_prime_UTR 70450529 70450659 70450529 ID=Msa0568820-mRNA-1:five_prime_utr;Parent=Msa0568820-mRNA-1
chr4_1 CDS 70450466 70450528 70450466 ID=Msa0568820-mRNA-1:cds;Parent=Msa0568820-mRNA-1
chr4_1 CDS 70448886 70448908 70448886 ID=Msa0568820-mRNA-1:cds;Parent=Msa0568820-mRNA-1
chr4_1 CDS 70448584 70448779 70448584 ID=Msa0568820-mRNA-1:cds;Parent=Msa0568820-mRNA-1
chr4_1 three_prime_UTR 70448046 70448583 70448046 ID=Msa0568820-mRNA-1:three_prime_utr;Parent=Msa0568820-mRNA-1
Gene Sequence

>Msa0568820

ATGGGTGTGACAAAGGAACAAGTCGAATCATCTTTGAACTCCAAACTCAACCCTTCCCATCTTGAAGTAACTGATATATCTGGAGGGTGTGGCTCAAGTTTTGCAGTTGAGATTGTTTCAGAACAATTTGAAGGAAAAAGGCTATTGGAAAGGCATCGAATGGTGAATGCTGCCTTGGAGGAGGAAATGAAAGAGATTCATGCACTCTCTGTAAAGAAAGCTGTAACTCCAGAACAGTGGAAAAAACAGCAAGAGTCCAACCAATCAAATTCTGCGGCCTAG

Protein sequence

>Msa0568820

MGVTKEQVESSLNSKLNPSHLEVTDISGGCGSSFAVEIVSEQFEGKRLLERHRMVNAALEEEMKEIHALSVKKAVTPEQWKKQQESNQSNSAA*