AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1228890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1228890 MtrunA17_Chr8g0335681 93.130 262 2 1 1 246 1 262 1.86e-180 495
Msa1228890 MtrunA17_Chr7g0250291 73.308 266 51 3 1 246 1 266 3.34e-134 379
Msa1228890 MtrunA17_Chr3g0122601 55.285 246 92 2 18 245 16 261 8.21e-86 256
Msa1228890 MtrunA17_Chr4g0022101 52.564 234 91 3 29 244 1 232 1.53e-84 251
Msa1228890 MtrunA17_Chr7g0254541 52.869 244 83 4 26 244 81 317 3.12e-81 246
Msa1228890 MtrunA17_Chr0c29g0494021 63.736 91 16 2 173 246 1 91 3.98e-28 102
Msa1228890 MtrunA17_Chr0c29g0494031 84.211 38 6 0 87 124 5 42 2.47e-17 74.3
Msa1228890 MtrunA17_Chr0c29g0494041 69.091 55 14 1 1 52 1 55 5.95e-17 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1228890 AT2G44770.1 73.684 266 50 3 1 246 1 266 7.13e-138 388
Msa1228890 AT3G60260.2 70.677 266 58 3 1 246 1 266 7.13e-133 375
Msa1228890 AT3G60260.4 70.677 266 58 3 1 246 1 266 7.13e-133 375
Msa1228890 AT3G60260.1 70.677 266 58 3 1 246 1 266 7.13e-133 375
Msa1228890 AT3G60260.3 71.605 243 52 2 21 246 2 244 3.43e-124 353
Msa1228890 AT1G67400.1 50.570 263 103 4 10 245 19 281 6.51e-85 254
Msa1228890 AT1G03620.8 52.941 238 91 4 25 244 29 263 2.98e-84 252
Msa1228890 AT1G03620.10 52.941 238 91 4 25 244 29 263 2.98e-84 252
Msa1228890 AT1G03620.9 52.941 238 91 4 25 244 29 263 2.98e-84 252
Msa1228890 AT1G03620.1 52.941 238 91 4 25 244 29 263 2.98e-84 252
Msa1228890 AT1G03620.7 52.941 238 91 4 25 244 29 263 2.98e-84 252
Msa1228890 AT1G03620.4 52.941 238 91 4 25 244 29 263 2.98e-84 252
Msa1228890 AT1G03620.5 52.941 238 91 4 25 244 29 263 2.98e-84 252
Msa1228890 AT1G03620.11 52.941 238 91 4 25 244 29 263 2.98e-84 252
Msa1228890 AT1G03620.13 52.941 238 91 4 25 244 29 263 2.98e-84 252
Msa1228890 AT3G03610.4 54.167 240 90 4 26 246 97 335 3.79e-84 254
Msa1228890 AT3G03610.1 54.167 240 90 4 26 246 85 323 3.83e-84 254
Msa1228890 AT3G03610.3 54.167 240 90 4 26 246 85 323 3.83e-84 254
Msa1228890 AT3G03610.2 54.167 240 90 4 26 246 85 323 3.83e-84 254
Msa1228890 AT1G03620.12 52.941 238 91 4 25 244 61 295 1.36e-83 251
Msa1228890 AT1G03620.3 53.419 234 88 4 29 244 1 231 1.81e-83 249
Msa1228890 AT1G03620.6 53.419 234 88 4 29 244 1 231 1.81e-83 249
Msa1228890 AT1G03620.2 53.419 234 88 4 29 244 1 231 1.81e-83 249
Msa1228890 AT3G43400.1 57.143 140 40 2 95 218 72 207 2.73e-48 159

Find 107 sgRNAs with CRISPR-Local

Find 423 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAGGCCCTTAAGGCTTTA+TGG 0.246095 8_2:+4511664 Msa1228890:intron
GATACTTGCAATTCTAATTC+TGG 0.279039 8_2:+4509044 Msa1228890:CDS
GAAGAAGAAGAATAAGAAAA+TGG 0.285834 8_2:+4508971 Msa1228890:exon
GAGAGAGAAGGAGAAGAGTT+AGG 0.297613 8_2:-4508818 None:intergenic
ATTCCGTTTCTCTCCGATTC+CGG 0.302172 8_2:+4508858 Msa1228890:five_prime_UTR
ATTGCAGCTGAGGCTGTTGC+AGG 0.306569 8_2:+4510811 Msa1228890:intron
TACTTTGTAGAAATCCTTCC+AGG 0.323437 8_2:+4512124 Msa1228890:intron
CTGGAAAATTGAGGCGTAAC+CGG 0.334175 8_2:-4508877 None:intergenic
TTGTTGGCAGACATGATTAC+TGG 0.341717 8_2:+4515207 Msa1228890:three_prime_UTR
GAGTACCCGTTTGCCGTTGC+TGG 0.351816 8_2:+4512185 Msa1228890:CDS
AGAGAGAAGGAGAAGAGTTA+GGG 0.362482 8_2:-4508817 None:intergenic
TCACAGACTTGCAGTGTGTT+TGG 0.366409 8_2:+4515001 Msa1228890:three_prime_UTR
CATATTACAGGAGGCCCTTA+AGG 0.367402 8_2:+4511656 Msa1228890:intron
GTTCTTTGCTAGGAATTTCC+CGG 0.374040 8_2:+4511905 Msa1228890:CDS
GCGGTTCATGATTCATTAAC+GGG 0.378021 8_2:+4515303 Msa1228890:three_prime_UTR
AACCTTCCATAAAGCCTTAA+GGG 0.393515 8_2:-4511670 None:intergenic
CAACCTTCCATAAAGCCTTA+AGG 0.400193 8_2:-4511671 None:intergenic
GCCTCCCAACACCATTCTAA+TGG 0.401717 8_2:-4515109 None:intergenic
TAAGCCACGAAGTTCTTCTT+CGG 0.404370 8_2:-4511700 None:intergenic
ATCTACCTAAAATCTGTTGA+TGG 0.405572 8_2:-4511765 None:intergenic
CTGAGAGGATTGGATTGAAA+TGG 0.405961 8_2:-4508782 None:intergenic
TGCGGTTCATGATTCATTAA+CGG 0.407356 8_2:+4515302 Msa1228890:three_prime_UTR
AAGCCACGAAGTTCTTCTTC+GGG 0.407421 8_2:-4511699 None:intergenic
TTCGGAAGAAATCACCTCCT+TGG 0.411659 8_2:-4515063 None:intergenic
ATCGGAGCAGTGGAAGGAAA+TGG 0.419607 8_2:+4511725 Msa1228890:CDS
CAATCCTCAGGAGGAGTGCT+TGG 0.425788 8_2:+4511448 Msa1228890:intron
ATCTTAATTGTAAAATTGTC+GGG 0.426924 8_2:+4515231 Msa1228890:three_prime_UTR
AATCCTTCCAGGATCTGTTA+TGG 0.430424 8_2:+4512135 Msa1228890:CDS
TTCTATGCGTGCCTCATACA+TGG 0.433966 8_2:+4512903 Msa1228890:CDS
AATTGAGGCGTAACCGGAAT+CGG 0.436574 8_2:-4508871 None:intergenic
TGCTTGTGCTTCCATTAGAA+TGG 0.438477 8_2:+4515098 Msa1228890:three_prime_UTR
TCGGAAGAAATCACCTCCTT+GGG 0.439612 8_2:-4515062 None:intergenic
TTAACACCAGCAACGGCAAA+CGG 0.441947 8_2:-4512191 None:intergenic
CAAGTATCGGTATGAGGATT+GGG 0.445429 8_2:-4509029 None:intergenic
AATCTTAATTGTAAAATTGT+CGG 0.449941 8_2:+4515230 Msa1228890:three_prime_UTR
TGCTTCCATTAGAATGGTGT+TGG 0.451852 8_2:+4515104 Msa1228890:three_prime_UTR
CCCGCTTCCATAACAGATCC+TGG 0.454139 8_2:-4512142 None:intergenic
AGAACTTCGTGGCTTAATAT+CGG 0.455601 8_2:+4511707 Msa1228890:CDS
GCAAGTATCGGTATGAGGAT+TGG 0.456828 8_2:-4509030 None:intergenic
TCGTGAAAGTAGTTTGTATG+AGG 0.464656 8_2:-4514809 None:intergenic
TCTTGCTCATTTGTTTCTGA+AGG 0.470730 8_2:+4515376 Msa1228890:three_prime_UTR
TCATCATCATCATTATTAAA+CGG 0.478851 8_2:-4508910 None:intergenic
TCACATCACCGTTAAGCGTT+CGG 0.480693 8_2:-4515134 None:intergenic
TACATTGAAATCCATGTATG+AGG 0.482849 8_2:-4512914 None:intergenic
TGATTGAGATCTGAGAGGAT+TGG 0.484288 8_2:-4508792 None:intergenic
CTGCATAGCTTTCAAGCTGA+TGG 0.486549 8_2:+4512867 Msa1228890:CDS
GAATTGCAAGTATCGGTATG+AGG 0.487513 8_2:-4509035 None:intergenic
CTCCTAGAGTTTAGCTTCGA+AGG 0.493346 8_2:+4514861 Msa1228890:three_prime_UTR
GCTTAACGGTGATGTGAGCC+AGG 0.493769 8_2:+4515140 Msa1228890:three_prime_UTR
GCTTCGAAGGCCTTTGTGCA+TGG 0.498202 8_2:+4514874 Msa1228890:three_prime_UTR
GCTTCCATTAGAATGGTGTT+GGG 0.500199 8_2:+4515105 Msa1228890:three_prime_UTR
CCAGGATCTGTTATGGAAGC+GGG 0.507175 8_2:+4512142 Msa1228890:CDS
CGAATAGAAGTTCCATATGA+TGG 0.509767 8_2:+4511485 Msa1228890:CDS
TAACACCAGCAACGGCAAAC+GGG 0.511885 8_2:-4512190 None:intergenic
TACGTGTTTGTCAGGGGTGG+TGG 0.512647 8_2:+4511858 Msa1228890:intron
AATAAGAAAATGGATGATAG+AGG 0.513505 8_2:+4508981 Msa1228890:exon
TCGGAGCAGTGGAAGGAAAT+GGG 0.513871 8_2:+4511726 Msa1228890:CDS
AATCGGAGAGAAACGGAATC+CGG 0.515292 8_2:-4508854 None:intergenic
CAAATTGTGGATGATATTGT+TGG 0.519036 8_2:+4515191 Msa1228890:three_prime_UTR
ATTGAAATGGAAGACAGTTA+CGG 0.520445 8_2:-4508769 None:intergenic
CAAGCAACAAATCATTCCTT+CGG 0.522815 8_2:-4515081 None:intergenic
TGCATGCTGAATGGCAGGCA+TGG 0.528272 8_2:-4514920 None:intergenic
CAGATGCTTGATCTTGAAGC+AGG 0.530750 8_2:+4512233 Msa1228890:CDS
TCCATTAGAATGGTGTTGGG+AGG 0.532876 8_2:+4515108 Msa1228890:three_prime_UTR
AAAATCTCGCTGGAAAATTG+AGG 0.534594 8_2:-4508886 None:intergenic
GGCCCTTAAGGCTTTATGGA+AGG 0.535713 8_2:+4511668 Msa1228890:CDS
TCCAGGATCTGTTATGGAAG+CGG 0.539765 8_2:+4512141 Msa1228890:CDS
CTTAATATCGGAGCAGTGGA+AGG 0.541259 8_2:+4511719 Msa1228890:CDS
CTAAACTCTAGGAGACTGAC+AGG 0.543478 8_2:-4514852 None:intergenic
TATCTACTGTGTCTCAAACC+TGG 0.551915 8_2:-4515158 None:intergenic
TCAGCAGCATGGCTTGGTAG+AGG 0.553664 8_2:+4510835 Msa1228890:CDS
TCAACTATAGAACCATCATA+TGG 0.554157 8_2:-4511497 None:intergenic
GCAGGATCAGCAGCATGGCT+TGG 0.554647 8_2:+4510829 Msa1228890:CDS
TTTCCCGAAGAAGAACTTCG+TGG 0.555604 8_2:+4511696 Msa1228890:CDS
CAGAGAAGAGATAGCGACGC+GGG 0.556319 8_2:+4510877 Msa1228890:CDS
GGAAGGAAATGGGTTGGCAA+GGG 0.557960 8_2:+4511736 Msa1228890:CDS
GGAAATGGGTTGGCAAGGGA+AGG 0.561744 8_2:+4511740 Msa1228890:CDS
AGAATTAGAATTGCAAGTAT+CGG 0.564521 8_2:-4509042 None:intergenic
TCAAGCTGATGGATCACCAA+TGG 0.564603 8_2:+4512878 Msa1228890:CDS
GTTATTGCATGCTGAATGGC+AGG 0.566424 8_2:-4514925 None:intergenic
ATTAAACGGTAAAATCTCGC+TGG 0.567637 8_2:-4508896 None:intergenic
TGGAAGGAAATGGGTTGGCA+AGG 0.569053 8_2:+4511735 Msa1228890:CDS
TGGTTCTATAGTTGAGCACC+AGG 0.582856 8_2:+4511505 Msa1228890:CDS
GGCCTTCGAAGCTAAACTCT+AGG 0.583457 8_2:-4514863 None:intergenic
AAATGTTATTGCATGCTGAA+TGG 0.583836 8_2:-4514929 None:intergenic
AGCAGTGGAAGGAAATGGGT+TGG 0.590956 8_2:+4511730 Msa1228890:CDS
TAACCGGAATCGGAGAGAAA+CGG 0.599168 8_2:-4508861 None:intergenic
CGTGAAAGTAGTTTGTATGA+GGG 0.600468 8_2:-4514808 None:intergenic
AGGCACGCATAGAAAGCCAT+TGG 0.608578 8_2:-4512894 None:intergenic
GAGACAACGCTAATTCAGCT+TGG 0.619783 8_2:-4508720 None:intergenic
GTGGCTTAATATCGGAGCAG+TGG 0.619933 8_2:+4511715 Msa1228890:CDS
AAGGAGGTGATTTCTTCCGA+AGG 0.620784 8_2:+4515065 Msa1228890:three_prime_UTR
CTTGCAGTATTGTATTTCAG+CGG 0.620784 8_2:+4515335 Msa1228890:three_prime_UTR
CTTCCATAACAGATCCTGGA+AGG 0.623421 8_2:-4512138 None:intergenic
TGTGATGTTAACACCAGCAA+CGG 0.623780 8_2:-4512198 None:intergenic
GGCAAACGGGTACTCCCACA+CGG 0.625303 8_2:-4512177 None:intergenic
CTGTTGCAGGATCAGCAGCA+TGG 0.627647 8_2:+4510824 Msa1228890:CDS
GGAAGGAGATCGTTCCGTGT+GGG 0.632019 8_2:+4512163 Msa1228890:CDS
TGTTAACATCACATTCATGC+TGG 0.645069 8_2:+4512208 Msa1228890:CDS
GGGTTTGATTGAGATCTGAG+AGG 0.652178 8_2:-4508797 None:intergenic
CTCAGGAGGAGTGCTTGGAG+AGG 0.653461 8_2:+4511453 Msa1228890:intron
AGTTGCTTGCTGCTTCACAA+CGG 0.658520 8_2:-4508742 None:intergenic
GGGAAGGAGATCGTTCCGTG+TGG 0.666337 8_2:+4512162 Msa1228890:CDS
AGCACAGAGTCCATGCACAA+AGG 0.667410 8_2:-4514884 None:intergenic
GATCTGTTATGGAAGCGGGA+AGG 0.674343 8_2:+4512146 Msa1228890:CDS
TTAATGAATCATGAACCGCA+AGG 0.716239 8_2:-4515299 None:intergenic
ACAGAGAAGAGATAGCGACG+CGG 0.810969 8_2:+4510876 Msa1228890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTATAAAAATATTACCT+GGG - chr8_2:4510926-4510945 None:intergenic 10.0%
!! TTAATTATAAAAATATTACC+TGG - chr8_2:4510927-4510946 None:intergenic 10.0%
!! AAAAAAAAAAAAAAAAACTC+TGG - chr8_2:4511037-4511056 None:intergenic 10.0%
!! AATGCTATTAAAATTAATTA+AGG - chr8_2:4513588-4513607 None:intergenic 10.0%
!! ATTTCAATAAAATCCTAAAA+AGG - chr8_2:4509442-4509461 None:intergenic 15.0%
!! AAATTCAATTGTATTATTCA+TGG + chr8_2:4509521-4509540 Msa1228890:intron 15.0%
!!! AAGATTTATTTTTCGATATT+TGG - chr8_2:4511173-4511192 None:intergenic 15.0%
!! GTATCAATAAAAATCATTAA+CGG - chr8_2:4511841-4511860 None:intergenic 15.0%
!!! ATTTGTTTGTTTTTTTGTAT+TGG + chr8_2:4512027-4512046 Msa1228890:intron 15.0%
!! AATAGAGAAATTATAATAAC+AGG - chr8_2:4512271-4512290 None:intergenic 15.0%
!! TATATATCCTTTGTTAAATT+TGG - chr8_2:4512989-4513008 None:intergenic 15.0%
!!! TCAAATAAGTTTGTTAAAAA+GGG + chr8_2:4513218-4513237 Msa1228890:intron 15.0%
!!! TAAGGTGAAAAATATATTTT+TGG + chr8_2:4513435-4513454 Msa1228890:intron 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - chr8_2:4513910-4513929 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + chr8_2:4513810-4513829 Msa1228890:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr8_2:4514002-4514021 Msa1228890:intron 15.0%
!!! AGAAAATATTTTATCAAACA+AGG + chr8_2:4514336-4514355 Msa1228890:intron 15.0%
!!! TTATAAGGTATAAAAGTATA+AGG - chr8_2:4514365-4514384 None:intergenic 15.0%
!! TAATTCTTATCTTAGTTATA+AGG - chr8_2:4514380-4514399 None:intergenic 15.0%
!! TAAAAATACTTGAACTTATA+GGG + chr8_2:4514478-4514497 Msa1228890:intron 15.0%
!!! ATTTTAATGATGATAAATGT+CGG - chr8_2:4514589-4514608 None:intergenic 15.0%
!! TAATATAACTATTAATGTTC+TGG + chr8_2:4514710-4514729 Msa1228890:intron 15.0%
!! AATCTTAATTGTAAAATTGT+CGG + chr8_2:4515230-4515249 Msa1228890:three_prime_UTR 15.0%
!! TCATCATCATCATTATTAAA+CGG - chr8_2:4508913-4508932 None:intergenic 20.0%
!! CAGAATTTCATAAGATAAAA+GGG - chr8_2:4511348-4511367 None:intergenic 20.0%
!! GATTGAAAATTCAACATTAT+GGG - chr8_2:4511433-4511452 None:intergenic 20.0%
!! AACAAAAACTATGAATACAT+AGG - chr8_2:4511580-4511599 None:intergenic 20.0%
!! AACCAAAAAATAAATCATAC+CGG - chr8_2:4511927-4511946 None:intergenic 20.0%
!! ATTGTAACGAATAAATAACT+TGG + chr8_2:4511963-4511982 Msa1228890:intron 20.0%
!! TTGTAACGAATAAATAACTT+GGG + chr8_2:4511964-4511983 Msa1228890:intron 20.0%
!!! TACAGAGTATAATAAGTTTT+AGG - chr8_2:4512106-4512125 None:intergenic 20.0%
!! TATGTCATTATTAATGATCT+TGG - chr8_2:4512526-4512545 None:intergenic 20.0%
!!! ATTTTTTTATGGATCAAAAG+AGG + chr8_2:4512702-4512721 Msa1228890:intron 20.0%
!!! GTAAATTTGATTTACGTTTA+TGG + chr8_2:4513179-4513198 Msa1228890:intron 20.0%
!!! CAAACTTATTTGAGTTTAAA+GGG - chr8_2:4513211-4513230 None:intergenic 20.0%
!!! ACAAACTTATTTGAGTTTAA+AGG - chr8_2:4513212-4513231 None:intergenic 20.0%
!!! CTCAAATAAGTTTGTTAAAA+AGG + chr8_2:4513217-4513236 Msa1228890:intron 20.0%
!!! AGAGAGGTTTTAAAAAATTT+AGG + chr8_2:4513320-4513339 Msa1228890:intron 20.0%
!! TTAAAATGTAGAAATTCACT+AGG + chr8_2:4513406-4513425 Msa1228890:intron 20.0%
!! TAAAATGTAGAAATTCACTA+GGG + chr8_2:4513407-4513426 Msa1228890:intron 20.0%
!! TAAATGACTATCAATGTATA+TGG - chr8_2:4513462-4513481 None:intergenic 20.0%
!! ATTGCAAATTGTTTCATATA+AGG - chr8_2:4513494-4513513 None:intergenic 20.0%
!! TTTATTTCCTAATTTCCTAT+AGG + chr8_2:4513513-4513532 Msa1228890:intron 20.0%
!! TTATTTCCTAATTTCCTATA+GGG + chr8_2:4513514-4513533 Msa1228890:intron 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG + chr8_2:4513845-4513864 Msa1228890:intron 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + chr8_2:4513939-4513958 Msa1228890:intron 20.0%
!! AAACAAATTTGAATTGAGTA+GGG + chr8_2:4513940-4513959 Msa1228890:intron 20.0%
!!! CAAATTTAAAACTTGCATAT+AGG - chr8_2:4514082-4514101 None:intergenic 20.0%
!!! CTATATGCAAGTTTTAAATT+TGG + chr8_2:4514080-4514099 Msa1228890:intron 20.0%
!! AAATGTCTTAAATGAGTTTA+AGG - chr8_2:4514107-4514126 None:intergenic 20.0%
!!! AAGTTTTCAAAGATTTGTAT+AGG - chr8_2:4514269-4514288 None:intergenic 20.0%
!! GTAAAAATACTTGAACTTAT+AGG + chr8_2:4514477-4514496 Msa1228890:intron 20.0%
!!! TTGTAATCTTTTTCATGAAT+AGG + chr8_2:4514507-4514526 Msa1228890:intron 20.0%
!! CAAATAAAATTGTCATGAAT+AGG + chr8_2:4514537-4514556 Msa1228890:intron 20.0%
!! ATCTTAATTGTAAAATTGTC+GGG + chr8_2:4515231-4515250 Msa1228890:three_prime_UTR 20.0%
!!! GTTAGATTTTTAATGAATTG+TGG + chr8_2:4515255-4515274 Msa1228890:three_prime_UTR 20.0%
! GAAGAAGAAGAATAAGAAAA+TGG + chr8_2:4508971-4508990 Msa1228890:exon 25.0%
! AATAAGAAAATGGATGATAG+AGG + chr8_2:4508981-4509000 Msa1228890:exon 25.0%
! AGAATTAGAATTGCAAGTAT+CGG - chr8_2:4509045-4509064 None:intergenic 25.0%
!!! TATGATGGATGAATCTAATA+TGG - chr8_2:4509197-4509216 None:intergenic 25.0%
! TTCTATTCTATTCTGATGAT+TGG + chr8_2:4509257-4509276 Msa1228890:intron 25.0%
! TAAAATCCTAAAAAGGTAAC+TGG - chr8_2:4509435-4509454 None:intergenic 25.0%
! TTGCTTATGTGAATGTTATT+GGG - chr8_2:4509878-4509897 None:intergenic 25.0%
!! TACCATGATTTTATAGAAAC+TGG + chr8_2:4510070-4510089 Msa1228890:intron 25.0%
!! ACCATGATTTTATAGAAACT+GGG + chr8_2:4510071-4510090 Msa1228890:intron 25.0%
! ACATCATGCATATAACAATA+TGG - chr8_2:4510462-4510481 None:intergenic 25.0%
!!! ATCTTTTGAAGATGATAAGT+GGG + chr8_2:4510587-4510606 Msa1228890:intron 25.0%
! TATGAAAGACAAACAAGAAA+AGG - chr8_2:4511219-4511238 None:intergenic 25.0%
! TGTCTTTCATATTGTGTATA+TGG + chr8_2:4511228-4511247 Msa1228890:intron 25.0%
!! ATGCAAGAAAATACAGTTTT+TGG + chr8_2:4511259-4511278 Msa1228890:intron 25.0%
!!! CTAATCAGTTTTTAGTTTAG+TGG + chr8_2:4511304-4511323 Msa1228890:intron 25.0%
! CCAGAATTTCATAAGATAAA+AGG - chr8_2:4511349-4511368 None:intergenic 25.0%
!! CCTTTTATCTTATGAAATTC+TGG + chr8_2:4511346-4511365 Msa1228890:intron 25.0%
!! AACATTATGGGAAAATTTTG+AGG - chr8_2:4511421-4511440 None:intergenic 25.0%
! GGATTGAAAATTCAACATTA+TGG - chr8_2:4511434-4511453 None:intergenic 25.0%
! ATTGTAATAGAAATGATACC+TGG - chr8_2:4511526-4511545 None:intergenic 25.0%
! GACTTTAATGTACATATTAC+AGG + chr8_2:4511644-4511663 Msa1228890:intron 25.0%
! TTTAATGTACATATTACAGG+AGG + chr8_2:4511647-4511666 Msa1228890:intron 25.0%
! ACCAAAAAATAAATCATACC+GGG - chr8_2:4511926-4511945 None:intergenic 25.0%
! AATCAAAGTTTACTATGGAA+AGG + chr8_2:4511995-4512014 Msa1228890:intron 25.0%
!!! GTTTTGTTATTTCATCTATC+TGG - chr8_2:4512410-4512429 None:intergenic 25.0%
!!! AACAAAACTGTTTTGAAGTT+AGG + chr8_2:4512422-4512441 Msa1228890:intron 25.0%
!!! ACAAAACTGTTTTGAAGTTA+GGG + chr8_2:4512423-4512442 Msa1228890:intron 25.0%
!!! ACTTTTCTAAAGTTTCTTGA+AGG + chr8_2:4512659-4512678 Msa1228890:intron 25.0%
! TAAATCTATTCATGTTTGTC+TGG + chr8_2:4512813-4512832 Msa1228890:intron 25.0%
! TAGAAATAGGGAAAATAGTA+TGG + chr8_2:4512958-4512977 Msa1228890:intron 25.0%
! AAAGACATAATCTCTTGATA+TGG + chr8_2:4513275-4513294 Msa1228890:intron 25.0%
!! ATTGATAGTCATTTAAACTC+CGG + chr8_2:4513467-4513486 Msa1228890:intron 25.0%
! AAATTGTTTCATATAAGGAC+CGG - chr8_2:4513489-4513508 None:intergenic 25.0%
! AATTAACCCTATAGGAAATT+AGG - chr8_2:4513523-4513542 None:intergenic 25.0%
! AGAAACATAATTAACCCTAT+AGG - chr8_2:4513531-4513550 None:intergenic 25.0%
! AATTAAGGACTAAACTTACA+AGG - chr8_2:4513573-4513592 None:intergenic 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - chr8_2:4513650-4513669 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - chr8_2:4513651-4513670 None:intergenic 25.0%
! AGGGCAAAAAAACAAAATTA+GGG + chr8_2:4513973-4513992 Msa1228890:intron 25.0%
! TAAAACTTGCATATAGGAAA+GGG - chr8_2:4514076-4514095 None:intergenic 25.0%
! TTAAAACTTGCATATAGGAA+AGG - chr8_2:4514077-4514096 None:intergenic 25.0%
! CAAAGATTTGTATAGGAATT+AGG - chr8_2:4514262-4514281 None:intergenic 25.0%
!! ATGACATGATATTTTCACTT+TGG - chr8_2:4514294-4514313 None:intergenic 25.0%
!! GAACCACAAAAACATTTTAA+TGG + chr8_2:4514559-4514578 Msa1228890:intron 25.0%
!!! TCTCCATTAAAATGTTTTTG+TGG - chr8_2:4514565-4514584 None:intergenic 25.0%
!! AATCTAAAGCTAAGAAGTAA+AGG - chr8_2:4514672-4514691 None:intergenic 25.0%
!! ATAAGCTTTTAGTCAAATTG+TGG + chr8_2:4515178-4515197 Msa1228890:three_prime_UTR 25.0%
ATTGAAATGGAAGACAGTTA+CGG - chr8_2:4508772-4508791 None:intergenic 30.0%
GATACTTGCAATTCTAATTC+TGG + chr8_2:4509044-4509063 Msa1228890:CDS 30.0%
ATAGATATAGAGAGAGAAAG+AGG - chr8_2:4509153-4509172 None:intergenic 30.0%
ATGGATGAATCTAATATGGA+GGG - chr8_2:4509193-4509212 None:intergenic 30.0%
! GATAATATCCTAACTTGCAT+TGG + chr8_2:4509281-4509300 Msa1228890:intron 30.0%
TAGTAAAAACAGAGCATATG+TGG - chr8_2:4509370-4509389 None:intergenic 30.0%
! TTGATTCCAGTTACCTTTTT+AGG + chr8_2:4509426-4509445 Msa1228890:intron 30.0%
CTCAAATTCTGATAGGAAAA+CGG + chr8_2:4509498-4509517 Msa1228890:intron 30.0%
ATCACAGTAACATGTTCATT+GGG - chr8_2:4509654-4509673 None:intergenic 30.0%
AATCACAGTAACATGTTCAT+TGG - chr8_2:4509655-4509674 None:intergenic 30.0%
AGTGCATAATTTGATTCAGT+GGG + chr8_2:4509702-4509721 Msa1228890:intron 30.0%
TAATTTGATTCAGTGGGATA+AGG + chr8_2:4509708-4509727 Msa1228890:intron 30.0%
AAAACAAACATCCACTTTGT+AGG + chr8_2:4509768-4509787 Msa1228890:intron 30.0%
TGCTTATGTGAATGTTATTG+GGG - chr8_2:4509877-4509896 None:intergenic 30.0%
GTTGCTTATGTGAATGTTAT+TGG - chr8_2:4509879-4509898 None:intergenic 30.0%
TCCCAGTTTCTATAAAATCA+TGG - chr8_2:4510075-4510094 None:intergenic 30.0%
!! TTGTAGCTTTAGCAAAATCA+CGG + chr8_2:4510156-4510175 Msa1228890:intron 30.0%
!!! CATGTGTTTGTCATTTTCTA+TGG - chr8_2:4510535-4510554 None:intergenic 30.0%
!! CATCTTTTGAAGATGATAAG+TGG + chr8_2:4510586-4510605 Msa1228890:intron 30.0%
CTAAAAATTTCATCCCAAGT+TGG - chr8_2:4510748-4510767 None:intergenic 30.0%
TTTCTTAGAGTCTTCATTGA+TGG + chr8_2:4510775-4510794 Msa1228890:intron 30.0%
TTCTTAGAGTCTTCATTGAT+GGG + chr8_2:4510776-4510795 Msa1228890:intron 30.0%
!!! ATTTTGTTTTATTGCAGCTG+AGG + chr8_2:4510801-4510820 Msa1228890:intron 30.0%
! TGGTTTCTTTTAGATTTTGC+TGG - chr8_2:4511017-4511036 None:intergenic 30.0%
! TTTTTGTAGAGCATGTGATA+TGG + chr8_2:4511057-4511076 Msa1228890:intron 30.0%
ATATTGTGTATATGGTCTGT+GGG + chr8_2:4511236-4511255 Msa1228890:intron 30.0%
! ATGTTGAATTTTCAATCCTC+AGG + chr8_2:4511436-4511455 Msa1228890:intron 30.0%
TCAACTATAGAACCATCATA+TGG - chr8_2:4511500-4511519 None:intergenic 30.0%
ATCTACCTAAAATCTGTTGA+TGG - chr8_2:4511768-4511787 None:intergenic 30.0%
ATTAAGATGAACACAAGATC+TGG - chr8_2:4511813-4511832 None:intergenic 30.0%
TTTATTGATACGTGTTTGTC+AGG + chr8_2:4511850-4511869 Msa1228890:intron 30.0%
TTATTGATACGTGTTTGTCA+GGG + chr8_2:4511851-4511870 Msa1228890:intron 30.0%
! AGAATTTTCTGTTCTTTGCT+AGG + chr8_2:4511895-4511914 Msa1228890:CDS 30.0%
!!! TCCCGGTATGATTTATTTTT+TGG + chr8_2:4511922-4511941 Msa1228890:intron 30.0%
! CCATAGTAAACTTTGATTTC+TGG - chr8_2:4511993-4512012 None:intergenic 30.0%
CCAGAAATCAAAGTTTACTA+TGG + chr8_2:4511990-4512009 Msa1228890:intron 30.0%
TTAGGATATAGATATGTGCA+TGG - chr8_2:4512088-4512107 None:intergenic 30.0%
TCAGCATATGTAACATTGAA+AGG - chr8_2:4512452-4512471 None:intergenic 30.0%
TTGCATAAATCAGTACAGAA+AGG + chr8_2:4512482-4512501 Msa1228890:intron 30.0%
TACATTGAAATCCATGTATG+AGG - chr8_2:4512917-4512936 None:intergenic 30.0%
TTCAAGATGCAGTTATAAGA+GGG - chr8_2:4513097-4513116 None:intergenic 30.0%
TTTCAAGATGCAGTTATAAG+AGG - chr8_2:4513098-4513117 None:intergenic 30.0%
ACATAATCTCTTGATATGGA+GGG + chr8_2:4513279-4513298 Msa1228890:intron 30.0%
AAATTCACTAGGGAGAAATA+AGG + chr8_2:4513417-4513436 Msa1228890:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr8_2:4514033-4514052 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr8_2:4514032-4514051 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG + chr8_2:4513713-4513732 Msa1228890:intron 30.0%
CAGGGCAAAAAAACAAAATT+AGG + chr8_2:4513972-4513991 Msa1228890:intron 30.0%
AAGTAAGGACTAAACTTACA+AGG + chr8_2:4514017-4514036 Msa1228890:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr8_2:4514032-4514051 Msa1228890:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr8_2:4514033-4514052 Msa1228890:intron 30.0%
TCTTGTCAATCTCTGTTAAA+TGG + chr8_2:4514428-4514447 Msa1228890:intron 30.0%
GTTAAATGGCAATAAATGCA+AGG + chr8_2:4514442-4514461 Msa1228890:intron 30.0%
AAATGTTATTGCATGCTGAA+TGG - chr8_2:4514932-4514951 None:intergenic 30.0%
!!! TAGTGTTAGAAGTTTTGACT+CGG - chr8_2:4514963-4514982 None:intergenic 30.0%
CTGAAAAATAACAATTCCCA+AGG + chr8_2:4515046-4515065 Msa1228890:three_prime_UTR 30.0%
AAAAATAACAATTCCCAAGG+AGG + chr8_2:4515049-4515068 Msa1228890:three_prime_UTR 30.0%
CAAATTGTGGATGATATTGT+TGG + chr8_2:4515191-4515210 Msa1228890:three_prime_UTR 30.0%
AAAATCTCGCTGGAAAATTG+AGG - chr8_2:4508889-4508908 None:intergenic 35.0%
ATTAAACGGTAAAATCTCGC+TGG - chr8_2:4508899-4508918 None:intergenic 35.0%
GATGGATGAATCTAATATGG+AGG - chr8_2:4509194-4509213 None:intergenic 35.0%
! TTGATGGTAAACGAGATCTA+AGG - chr8_2:4509344-4509363 None:intergenic 35.0%
AGAGCATATGTGGAATTTGA+TGG - chr8_2:4509360-4509379 None:intergenic 35.0%
ATCAGAATTTGAGCTCTGTA+TGG - chr8_2:4509491-4509510 None:intergenic 35.0%
TACAGAGCTCAAATTCTGAT+AGG + chr8_2:4509491-4509510 Msa1228890:intron 35.0%
GTATTATTCATGGAAACCGT+TGG + chr8_2:4509531-4509550 Msa1228890:intron 35.0%
CATGTTACCAATTATGCCAA+CGG - chr8_2:4509550-4509569 None:intergenic 35.0%
!! AAAAGCTACACTTTTTAGCC+TGG + chr8_2:4509610-4509629 Msa1228890:intron 35.0%
CAGTGCATAATTTGATTCAG+TGG + chr8_2:4509701-4509720 Msa1228890:intron 35.0%
!! AAAGTGGATGTTTGTTTTCG+CGG - chr8_2:4509766-4509785 None:intergenic 35.0%
ATTTCGGTAAACCTACAAAG+TGG - chr8_2:4509782-4509801 None:intergenic 35.0%
ATGGCAGCTTATAGTGATTT+CGG - chr8_2:4509798-4509817 None:intergenic 35.0%
! AACTACACTTTTAGCCTGTT+TGG + chr8_2:4510027-4510046 Msa1228890:intron 35.0%
AACATGCATGTTTGGTATCA+CGG - chr8_2:4510189-4510208 None:intergenic 35.0%
TGCTTATGTGGATGTTAGAA+GGG - chr8_2:4510237-4510256 None:intergenic 35.0%
TTGCTTATGTGGATGTTAGA+AGG - chr8_2:4510238-4510257 None:intergenic 35.0%
TTAAGGGAGAATTGCTTATG+TGG - chr8_2:4510249-4510268 None:intergenic 35.0%
ACAATGACGTATTAGGATAC+CGG - chr8_2:4510311-4510330 None:intergenic 35.0%
AATTGCTTGTGTGGATGTTA+GGG - chr8_2:4510339-4510358 None:intergenic 35.0%
! AGTTGATGTGGAGGAAAAAA+AGG - chr8_2:4510509-4510528 None:intergenic 35.0%
!! TTTCTATGGTAGAGTTGATG+TGG - chr8_2:4510521-4510540 None:intergenic 35.0%
CTGTGTATCTTAAGACAATG+TGG + chr8_2:4510617-4510636 Msa1228890:intron 35.0%
TATAGAGATGATCTGTGCTA+AGG + chr8_2:4510683-4510702 Msa1228890:intron 35.0%
! TCTTGCTTGTTAACCAACTT+GGG + chr8_2:4510732-4510751 Msa1228890:intron 35.0%
!!! TTTTGATTTAACTCTAGCCC+AGG + chr8_2:4510906-4510925 Msa1228890:CDS 35.0%
! AGAGCATGTGATATGGATTT+TGG + chr8_2:4511064-4511083 Msa1228890:intron 35.0%
! CAAGGAACATTTTGCAATCT+AGG + chr8_2:4511139-4511158 Msa1228890:intron 35.0%
CATATTGTGTATATGGTCTG+TGG + chr8_2:4511235-4511254 Msa1228890:intron 35.0%
AAAAGGGAGCTCAAGTATAT+TGG - chr8_2:4511332-4511351 None:intergenic 35.0%
! TTGAATTTTCAATCCTCAGG+AGG + chr8_2:4511439-4511458 Msa1228890:intron 35.0%
CGAATAGAAGTTCCATATGA+TGG + chr8_2:4511485-4511504 Msa1228890:CDS 35.0%
!! TACAGTCTTTTTAAGCAACG+TGG + chr8_2:4511548-4511567 Msa1228890:intron 35.0%
! CATAGTTTTTGTTCTTCCCA+TGG + chr8_2:4511587-4511606 Msa1228890:intron 35.0%
CACATATAGTAGTAAGCCAT+GGG - chr8_2:4511606-4511625 None:intergenic 35.0%
AACCTTCCATAAAGCCTTAA+GGG - chr8_2:4511673-4511692 None:intergenic 35.0%
AGAACTTCGTGGCTTAATAT+CGG + chr8_2:4511707-4511726 Msa1228890:CDS 35.0%
! AGGATCCATCAACAGATTTT+AGG + chr8_2:4511760-4511779 Msa1228890:CDS 35.0%
TATTGATACGTGTTTGTCAG+GGG + chr8_2:4511852-4511871 Msa1228890:intron 35.0%
ATGGTAACTGATTGGATCTA+AGG - chr8_2:4512069-4512088 None:intergenic 35.0%
ATATGTGCATGGTAACTGAT+TGG - chr8_2:4512077-4512096 None:intergenic 35.0%
TACTTTGTAGAAATCCTTCC+AGG + chr8_2:4512124-4512143 Msa1228890:intron 35.0%
TGTTAACATCACATTCATGC+TGG + chr8_2:4512208-4512227 Msa1228890:CDS 35.0%
CACAAGGATTAGAAACAGAA+GGG - chr8_2:4512368-4512387 None:intergenic 35.0%
TCACAAGGATTAGAAACAGA+AGG - chr8_2:4512369-4512388 None:intergenic 35.0%
TCGGCAAAATTAACATCACA+AGG - chr8_2:4512384-4512403 None:intergenic 35.0%
! TTGTGATGTTAATTTTGCCG+AGG + chr8_2:4512383-4512402 Msa1228890:intron 35.0%
TATTTCATCTATCTGGTCCT+CGG - chr8_2:4512403-4512422 None:intergenic 35.0%
GCATATGTAACATTGAAAGG+TGG - chr8_2:4512449-4512468 None:intergenic 35.0%
ATTTCTACGAGCTGTGATTA+AGG - chr8_2:4512945-4512964 None:intergenic 35.0%
TAATCACAGCTCGTAGAAAT+AGG + chr8_2:4512945-4512964 Msa1228890:intron 35.0%
AATCACAGCTCGTAGAAATA+GGG + chr8_2:4512946-4512965 Msa1228890:intron 35.0%
GGCTCAACCAAATTTAACAA+AGG + chr8_2:4512979-4512998 Msa1228890:intron 35.0%
! TTTTGTGCGATTTCTCCTTT+CGG - chr8_2:4513244-4513263 None:intergenic 35.0%
GACATAATCTCTTGATATGG+AGG + chr8_2:4513278-4513297 Msa1228890:intron 35.0%
GGTATATTTGAAGACTAGAG+AGG + chr8_2:4513304-4513323 Msa1228890:intron 35.0%
!!! TTTGCGATAATTTTTTGCGG+AGG + chr8_2:4513848-4513867 Msa1228890:intron 35.0%
TGGCAATAAATGCAAGGATA+AGG + chr8_2:4514448-4514467 Msa1228890:intron 35.0%
! CGTGAAAGTAGTTTGTATGA+GGG - chr8_2:4514811-4514830 None:intergenic 35.0%
! TCGTGAAAGTAGTTTGTATG+AGG - chr8_2:4514812-4514831 None:intergenic 35.0%
CAAGCAACAAATCATTCCTT+CGG - chr8_2:4515084-4515103 None:intergenic 35.0%
TTAATGAATCATGAACCGCA+AGG - chr8_2:4515302-4515321 None:intergenic 35.0%
TGCGGTTCATGATTCATTAA+CGG + chr8_2:4515302-4515321 Msa1228890:three_prime_UTR 35.0%
CTTGCAGTATTGTATTTCAG+CGG + chr8_2:4515335-4515354 Msa1228890:three_prime_UTR 35.0%
!! TCTTGCTCATTTGTTTCTGA+AGG + chr8_2:4515376-4515395 Msa1228890:three_prime_UTR 35.0%
CTGAGAGGATTGGATTGAAA+TGG - chr8_2:4508785-4508804 None:intergenic 40.0%
TGATTGAGATCTGAGAGGAT+TGG - chr8_2:4508795-4508814 None:intergenic 40.0%
AGAGAGAAGGAGAAGAGTTA+GGG - chr8_2:4508820-4508839 None:intergenic 40.0%
!! CAAGTATCGGTATGAGGATT+GGG - chr8_2:4509032-4509051 None:intergenic 40.0%
!! GAATTGCAAGTATCGGTATG+AGG - chr8_2:4509038-4509057 None:intergenic 40.0%
TTGACGAACCAATGCAAGTT+AGG - chr8_2:4509292-4509311 None:intergenic 40.0%
ATGGAAACCGTTGGCATAAT+TGG + chr8_2:4509540-4509559 Msa1228890:intron 40.0%
! CGTTGGCATAATTGGTAACA+TGG + chr8_2:4509548-4509567 Msa1228890:intron 40.0%
! TGGCATAATTGGTAACATGG+CGG + chr8_2:4509551-4509570 Msa1228890:intron 40.0%
!! ACTTTTTAGCCTGGTTGGTT+TGG + chr8_2:4509619-4509638 Msa1228890:intron 40.0%
CAATTTGCCTCCCCTATATA+CGG + chr8_2:4509843-4509862 Msa1228890:intron 40.0%
GGATAGACAACCGTATATAG+GGG - chr8_2:4509856-4509875 None:intergenic 40.0%
GGGATAGACAACCGTATATA+GGG - chr8_2:4509857-4509876 None:intergenic 40.0%
TTCGAGCCTAAGCTGAATAA+AGG - chr8_2:4509927-4509946 None:intergenic 40.0%
ACGACAGCTTTACCAGAATA+AGG + chr8_2:4509980-4509999 Msa1228890:intron 40.0%
CGACAGCTTTACCAGAATAA+GGG + chr8_2:4509981-4510000 Msa1228890:intron 40.0%
AGCTTTACCAGAATAAGGGT+GGG + chr8_2:4509985-4510004 Msa1228890:intron 40.0%
! CACTTTTAGCCTGTTTGGTT+TGG + chr8_2:4510032-4510051 Msa1228890:intron 40.0%
!!! TTTTAGCCTGTTTGGTTTGG+TGG + chr8_2:4510035-4510054 Msa1228890:intron 40.0%
!! GCATATGTTTGCTATTGCAG+TGG - chr8_2:4510135-4510154 None:intergenic 40.0%
!! TAGCTTTAGCAAAATCACGG+TGG + chr8_2:4510159-4510178 Msa1228890:intron 40.0%
CATGTTCCCTCTCCTATATA+TGG + chr8_2:4510203-4510222 Msa1228890:intron 40.0%
AGACGACCATATATAGGAGA+GGG - chr8_2:4510212-4510231 None:intergenic 40.0%
TAGACGACCATATATAGGAG+AGG - chr8_2:4510213-4510232 None:intergenic 40.0%
GCTTATGTGGATGTTAGAAG+GGG - chr8_2:4510236-4510255 None:intergenic 40.0%
GTGCTGAGTAGCAAAGTTAA+GGG - chr8_2:4510265-4510284 None:intergenic 40.0%
TTGCTACTCAGCACCTTTAT+TGG + chr8_2:4510271-4510290 Msa1228890:intron 40.0%
TGCTACTCAGCACCTTTATT+GGG + chr8_2:4510272-4510291 Msa1228890:intron 40.0%
TCAGCACCTTTATTGGGTTT+AGG + chr8_2:4510278-4510297 Msa1228890:intron 40.0%
TTCGAGCCTAAACCCAATAA+AGG - chr8_2:4510287-4510306 None:intergenic 40.0%
CAATGACGTATTAGGATACC+GGG - chr8_2:4510310-4510329 None:intergenic 40.0%
GGGATAGACAATGACGTATT+AGG - chr8_2:4510318-4510337 None:intergenic 40.0%
ATTGCTTGTGTGGATGTTAG+GGG - chr8_2:4510338-4510357 None:intergenic 40.0%
CAATTGCTTGTGTGGATGTT+AGG - chr8_2:4510340-4510359 None:intergenic 40.0%
!! GCTAATAAAGGTGCTGAGTA+CGG - chr8_2:4510374-4510393 None:intergenic 40.0%
!! TCAGCACCTTTATTAGCCTT+AGG + chr8_2:4510377-4510396 Msa1228890:intron 40.0%
TTCGAGCCTAAGGCTAATAA+AGG - chr8_2:4510386-4510405 None:intergenic 40.0%
ATCGCAGGGAAAAACTAGAA+TGG - chr8_2:4510485-4510504 None:intergenic 40.0%
GCACAGATCATCTCTATACT+TGG - chr8_2:4510681-4510700 None:intergenic 40.0%
! CTCTTGCTTGTTAACCAACT+TGG + chr8_2:4510731-4510750 Msa1228890:intron 40.0%
! CATCGTCTACACTGATTACA+AGG + chr8_2:4511121-4511140 Msa1228890:intron 40.0%
GCACATATAGTAGTAAGCCA+TGG - chr8_2:4511607-4511626 None:intergenic 40.0%
CAACCTTCCATAAAGCCTTA+AGG - chr8_2:4511674-4511693 None:intergenic 40.0%
TAAGCCACGAAGTTCTTCTT+CGG - chr8_2:4511703-4511722 None:intergenic 40.0%
!!! GGGTGGTGGTTTTATTTCTT+TGG + chr8_2:4511872-4511891 Msa1228890:CDS 40.0%
GTTCTTTGCTAGGAATTTCC+CGG + chr8_2:4511905-4511924 Msa1228890:CDS 40.0%
AATCCTTCCAGGATCTGTTA+TGG + chr8_2:4512135-4512154 Msa1228890:CDS 40.0%
TGTGATGTTAACACCAGCAA+CGG - chr8_2:4512201-4512220 None:intergenic 40.0%
! GTTTGTTAAAAAGGGCCGAA+AGG + chr8_2:4513226-4513245 Msa1228890:intron 40.0%
AATCTCTTGATATGGAGGGA+AGG + chr8_2:4513283-4513302 Msa1228890:intron 40.0%
! CAGAAGTAAAGTACTCTGCA+TGG + chr8_2:4513344-4513363 Msa1228890:intron 40.0%
! TACTCTGCATGGCATTTTAG+TGG + chr8_2:4513355-4513374 Msa1228890:intron 40.0%
!! ACTCTGCATGGCATTTTAGT+GGG + chr8_2:4513356-4513375 Msa1228890:intron 40.0%
AAGAGAATCACCATGACAGT+CGG - chr8_2:4513385-4513404 None:intergenic 40.0%
TTGAGTAGGGACTAATACTC+AGG + chr8_2:4513953-4513972 Msa1228890:intron 40.0%
TGAGTAGGGACTAATACTCA+GGG + chr8_2:4513954-4513973 Msa1228890:intron 40.0%
AGAGAGATGAGAGATTGTCT+TGG + chr8_2:4514609-4514628 Msa1228890:intron 40.0%
TGCTTGTGCTTCCATTAGAA+TGG + chr8_2:4515098-4515117 Msa1228890:three_prime_UTR 40.0%
TGCTTCCATTAGAATGGTGT+TGG + chr8_2:4515104-4515123 Msa1228890:three_prime_UTR 40.0%
GCTTCCATTAGAATGGTGTT+GGG + chr8_2:4515105-4515124 Msa1228890:three_prime_UTR 40.0%
TATCTACTGTGTCTCAAACC+TGG - chr8_2:4515161-4515180 None:intergenic 40.0%
TTGTTGGCAGACATGATTAC+TGG + chr8_2:4515207-4515226 Msa1228890:three_prime_UTR 40.0%
!!! TGTGGTTTGTCACTTTTGTC+TGG + chr8_2:4515273-4515292 Msa1228890:three_prime_UTR 40.0%
!! ACTTTTGTCTGGTTTCCTTG+CGG + chr8_2:4515284-4515303 Msa1228890:three_prime_UTR 40.0%
GCGGTTCATGATTCATTAAC+GGG + chr8_2:4515303-4515322 Msa1228890:three_prime_UTR 40.0%
! TGTATTTCAGCGGAGTTTTG+AGG + chr8_2:4515345-4515364 Msa1228890:three_prime_UTR 40.0%
GAGACAACGCTAATTCAGCT+TGG - chr8_2:4508723-4508742 None:intergenic 45.0%
! AGTTGCTTGCTGCTTCACAA+CGG - chr8_2:4508745-4508764 None:intergenic 45.0%
GGGTTTGATTGAGATCTGAG+AGG - chr8_2:4508800-4508819 None:intergenic 45.0%
GAGAGAGAAGGAGAAGAGTT+AGG - chr8_2:4508821-4508840 None:intergenic 45.0%
AATCGGAGAGAAACGGAATC+CGG - chr8_2:4508857-4508876 None:intergenic 45.0%
ATTCCGTTTCTCTCCGATTC+CGG + chr8_2:4508858-4508877 Msa1228890:five_prime_UTR 45.0%
TAACCGGAATCGGAGAGAAA+CGG - chr8_2:4508864-4508883 None:intergenic 45.0%
AATTGAGGCGTAACCGGAAT+CGG - chr8_2:4508874-4508893 None:intergenic 45.0%
CTGGAAAATTGAGGCGTAAC+CGG - chr8_2:4508880-4508899 None:intergenic 45.0%
!! GCAAGTATCGGTATGAGGAT+TGG - chr8_2:4509033-4509052 None:intergenic 45.0%
GAGAGAAAGAGGTAGCGAAA+AGG - chr8_2:4509142-4509161 None:intergenic 45.0%
! GGCATAATTGGTAACATGGC+GGG + chr8_2:4509552-4509571 Msa1228890:intron 45.0%
ACATAGACCCATCCTGATTC+TGG - chr8_2:4509582-4509601 None:intergenic 45.0%
!! GCTACACTTTTTAGCCTGGT+TGG + chr8_2:4509614-4509633 Msa1228890:intron 45.0%
!!! TTTTAGCCTGGTTGGTTTGG+AGG + chr8_2:4509622-4509641 Msa1228890:intron 45.0%
!! TGGCGGGTTTGTGAAAATCA+TGG - chr8_2:4509817-4509836 None:intergenic 45.0%
AGGCAAATTGGTATCATGGC+GGG - chr8_2:4509833-4509852 None:intergenic 45.0%
GAGGCAAATTGGTATCATGG+CGG - chr8_2:4509834-4509853 None:intergenic 45.0%
CGTATATAGGGGAGGCAAAT+TGG - chr8_2:4509845-4509864 None:intergenic 45.0%
TAGACAACCGTATATAGGGG+AGG - chr8_2:4509853-4509872 None:intergenic 45.0%
GGGGATAGACAACCGTATAT+AGG - chr8_2:4509858-4509877 None:intergenic 45.0%
TCGGCACCTTTATTCAGCTT+AGG + chr8_2:4509918-4509937 Msa1228890:intron 45.0%
CTGGTATCCTAACACATGCT+GGG + chr8_2:4509948-4509967 Msa1228890:intron 45.0%
CTGGTAAAGCTGTCGTGATA+CGG - chr8_2:4509976-4509995 None:intergenic 45.0%
CAGCTTTACCAGAATAAGGG+TGG + chr8_2:4509984-4510003 Msa1228890:intron 45.0%
TGCAGCTTCTGTCAAACATG+TGG + chr8_2:4510097-4510116 Msa1228890:intron 45.0%
AGGGGTAGACGACCATATAT+AGG - chr8_2:4510218-4510237 None:intergenic 45.0%
! GGTGCTGAGTAGCAAAGTTA+AGG - chr8_2:4510266-4510285 None:intergenic 45.0%
TTAGGGGACAATTGCTTGTG+TGG - chr8_2:4510348-4510367 None:intergenic 45.0%
GTGCTGAGTACGGAATTTAG+GGG - chr8_2:4510364-4510383 None:intergenic 45.0%
! GGTGCTGAGTACGGAATTTA+GGG - chr8_2:4510365-4510384 None:intergenic 45.0%
!! AGGTGCTGAGTACGGAATTT+AGG - chr8_2:4510366-4510385 None:intergenic 45.0%
!! ATTAGCCTTAGGCTCGAACT+CGG + chr8_2:4510388-4510407 Msa1228890:intron 45.0%
AAGTGAGACAAGACTGTGTC+AGG - chr8_2:4510416-4510435 None:intergenic 45.0%
!! GAGGAAAAAAAGGCATCGCA+GGG - chr8_2:4510499-4510518 None:intergenic 45.0%
!! CTATGGTAGAGTTGATGTGG+AGG - chr8_2:4510518-4510537 None:intergenic 45.0%
! TGGTTCTATAGTTGAGCACC+AGG + chr8_2:4511505-4511524 Msa1228890:CDS 45.0%
CATATTACAGGAGGCCCTTA+AGG + chr8_2:4511656-4511675 Msa1228890:intron 45.0%
TTTCCCGAAGAAGAACTTCG+TGG + chr8_2:4511696-4511715 Msa1228890:CDS 45.0%
AAGCCACGAAGTTCTTCTTC+GGG - chr8_2:4511702-4511721 None:intergenic 45.0%
CTTAATATCGGAGCAGTGGA+AGG + chr8_2:4511719-4511738 Msa1228890:CDS 45.0%
CTTCCATAACAGATCCTGGA+AGG - chr8_2:4512141-4512160 None:intergenic 45.0%
TCCAGGATCTGTTATGGAAG+CGG + chr8_2:4512141-4512160 Msa1228890:CDS 45.0%
TTAACACCAGCAACGGCAAA+CGG - chr8_2:4512194-4512213 None:intergenic 45.0%
CAGATGCTTGATCTTGAAGC+AGG + chr8_2:4512233-4512252 Msa1228890:CDS 45.0%
!! TGATCTTGGCGTTGATTCGA+TGG - chr8_2:4512512-4512531 None:intergenic 45.0%
CTGCATAGCTTTCAAGCTGA+TGG + chr8_2:4512867-4512886 Msa1228890:CDS 45.0%
! TCAAGCTGATGGATCACCAA+TGG + chr8_2:4512878-4512897 Msa1228890:CDS 45.0%
TTCTATGCGTGCCTCATACA+TGG + chr8_2:4512903-4512922 Msa1228890:CDS 45.0%
!! GTTATAAGAGGGTGTTGACG+TGG - chr8_2:4513086-4513105 None:intergenic 45.0%
CGACTGACGTGACAAAATAG+TGG + chr8_2:4513130-4513149 Msa1228890:intron 45.0%
GAGATGAGAGATTGTCTTGG+AGG + chr8_2:4514612-4514631 Msa1228890:intron 45.0%
! CTAAACTCTAGGAGACTGAC+AGG - chr8_2:4514855-4514874 None:intergenic 45.0%
! CTCCTAGAGTTTAGCTTCGA+AGG + chr8_2:4514861-4514880 Msa1228890:three_prime_UTR 45.0%
GTTATTGCATGCTGAATGGC+AGG - chr8_2:4514928-4514947 None:intergenic 45.0%
TCACAGACTTGCAGTGTGTT+TGG + chr8_2:4515001-4515020 Msa1228890:three_prime_UTR 45.0%
TCGGAAGAAATCACCTCCTT+GGG - chr8_2:4515065-4515084 None:intergenic 45.0%
TTCGGAAGAAATCACCTCCT+TGG - chr8_2:4515066-4515085 None:intergenic 45.0%
AAGGAGGTGATTTCTTCCGA+AGG + chr8_2:4515065-4515084 Msa1228890:three_prime_UTR 45.0%
! TCCATTAGAATGGTGTTGGG+AGG + chr8_2:4515108-4515127 Msa1228890:three_prime_UTR 45.0%
TCACATCACCGTTAAGCGTT+CGG - chr8_2:4515137-4515156 None:intergenic 45.0%
!! AAATAATAAATAATATATGA+TGG - chr8_2:4509212-4509231 None:intergenic 5.0%
!!! TAAGTAAATTTTTTTTTATA+GGG - chr8_2:4513617-4513636 None:intergenic 5.0%
!!! ATAAGTAAATTTTTTTTTAT+AGG - chr8_2:4513618-4513637 None:intergenic 5.0%
GAGAGAGAGAGAGAGAGAGA+AGG - chr8_2:4508833-4508852 None:intergenic 50.0%
TCTCTCTCTCTCTCTCTCAC+CGG + chr8_2:4508835-4508854 Msa1228890:five_prime_UTR 50.0%
GGGTTTGCCAGAATCAGGAT+GGG + chr8_2:4509572-4509591 Msa1228890:intron 50.0%
GGGGAGGCAAATTGGTATCA+TGG - chr8_2:4509837-4509856 None:intergenic 50.0%
!! CTGAATAAAGGTGCCGAGTC+GGG - chr8_2:4509915-4509934 None:intergenic 50.0%
!! GCTGAATAAAGGTGCCGAGT+CGG - chr8_2:4509916-4509935 None:intergenic 50.0%
ATTCAGCTTAGGCTCGAACC+TGG + chr8_2:4509929-4509948 Msa1228890:intron 50.0%
CCAGCATGTGTTAGGATACC+AGG - chr8_2:4509950-4509969 None:intergenic 50.0%
CCTGGTATCCTAACACATGC+TGG + chr8_2:4509947-4509966 Msa1228890:intron 50.0%
TACGGTACCCAGCATGTGTT+AGG - chr8_2:4509958-4509977 None:intergenic 50.0%
ACAGTGACCCACCCTTATTC+TGG - chr8_2:4509995-4510014 None:intergenic 50.0%
!! TAGCCTGTTTGGTTTGGTGG+TGG + chr8_2:4510038-4510057 Msa1228890:intron 50.0%
!! AGCCTGTTTGGTTTGGTGGT+GGG + chr8_2:4510039-4510058 Msa1228890:intron 50.0%
GGAGAGGGAACATGCATGTT+TGG - chr8_2:4510197-4510216 None:intergenic 50.0%
ATTGGGTTTAGGCTCGAACC+CGG + chr8_2:4510289-4510308 Msa1228890:intron 50.0%
!! GGAGGAAAAAAAGGCATCGC+AGG - chr8_2:4510500-4510519 None:intergenic 50.0%
ACAGAGAAGAGATAGCGACG+CGG + chr8_2:4510876-4510895 Msa1228890:CDS 50.0%
AGGAGGCCCTTAAGGCTTTA+TGG + chr8_2:4511664-4511683 Msa1228890:intron 50.0%
! GGCCCTTAAGGCTTTATGGA+AGG + chr8_2:4511668-4511687 Msa1228890:CDS 50.0%
GTGGCTTAATATCGGAGCAG+TGG + chr8_2:4511715-4511734 Msa1228890:CDS 50.0%
ATCGGAGCAGTGGAAGGAAA+TGG + chr8_2:4511725-4511744 Msa1228890:CDS 50.0%
TCGGAGCAGTGGAAGGAAAT+GGG + chr8_2:4511726-4511745 Msa1228890:CDS 50.0%
AGCAGTGGAAGGAAATGGGT+TGG + chr8_2:4511730-4511749 Msa1228890:CDS 50.0%
!! TGGAAGGAAATGGGTTGGCA+AGG + chr8_2:4511735-4511754 Msa1228890:CDS 50.0%
!! GGAAGGAAATGGGTTGGCAA+GGG + chr8_2:4511736-4511755 Msa1228890:CDS 50.0%
TGATACGTGTTTGTCAGGGG+TGG + chr8_2:4511855-4511874 Msa1228890:intron 50.0%
CCAGGATCTGTTATGGAAGC+GGG + chr8_2:4512142-4512161 Msa1228890:CDS 50.0%
GATCTGTTATGGAAGCGGGA+AGG + chr8_2:4512146-4512165 Msa1228890:CDS 50.0%
TAACACCAGCAACGGCAAAC+GGG - chr8_2:4512193-4512212 None:intergenic 50.0%
TACAGTCAAGCCACGCACAT+TGG + chr8_2:4512628-4512647 Msa1228890:intron 50.0%
AGGCACGCATAGAAAGCCAT+TGG - chr8_2:4512897-4512916 None:intergenic 50.0%
! TAGTGGGTAACCGACTGTCA+TGG + chr8_2:4513372-4513391 Msa1228890:intron 50.0%
GGCCTTCGAAGCTAAACTCT+AGG - chr8_2:4514866-4514885 None:intergenic 50.0%
AGCACAGAGTCCATGCACAA+AGG - chr8_2:4514887-4514906 None:intergenic 50.0%
GCCTCCCAACACCATTCTAA+TGG - chr8_2:4515112-4515131 None:intergenic 50.0%
!! ATGGCGGGTTTGCCAGAATC+AGG + chr8_2:4509567-4509586 Msa1228890:intron 55.0%
CGGGTTTGCCAGAATCAGGA+TGG + chr8_2:4509571-4509590 Msa1228890:intron 55.0%
ACGTGACCTCCAAACCAACC+AGG - chr8_2:4509631-4509650 None:intergenic 55.0%
TCTCCCTTAACCTCCCGACT+CGG + chr8_2:4509899-4509918 Msa1228890:intron 55.0%
!! AATAAAGGTGCCGAGTCGGG+AGG - chr8_2:4509912-4509931 None:intergenic 55.0%
CTCCCACCACCAAACCAAAC+AGG - chr8_2:4510044-4510063 None:intergenic 55.0%
!! AGGTACCGAGTTCGAGCCTA+AGG - chr8_2:4510396-4510415 None:intergenic 55.0%
ATTGCAGCTGAGGCTGTTGC+AGG + chr8_2:4510811-4510830 Msa1228890:intron 55.0%
CTGTTGCAGGATCAGCAGCA+TGG + chr8_2:4510824-4510843 Msa1228890:CDS 55.0%
!! TCAGCAGCATGGCTTGGTAG+AGG + chr8_2:4510835-4510854 Msa1228890:CDS 55.0%
CAGAGAAGAGATAGCGACGC+GGG + chr8_2:4510877-4510896 Msa1228890:CDS 55.0%
!! CAATCCTCAGGAGGAGTGCT+TGG + chr8_2:4511448-4511467 Msa1228890:intron 55.0%
!! GGAAATGGGTTGGCAAGGGA+AGG + chr8_2:4511740-4511759 Msa1228890:CDS 55.0%
TACGTGTTTGTCAGGGGTGG+TGG + chr8_2:4511858-4511877 Msa1228890:intron 55.0%
CCCGCTTCCATAACAGATCC+TGG - chr8_2:4512145-4512164 None:intergenic 55.0%
GGAAGGAGATCGTTCCGTGT+GGG + chr8_2:4512163-4512182 Msa1228890:CDS 55.0%
AGTCAAGCCACGCACATTGG+TGG + chr8_2:4512631-4512650 Msa1228890:intron 55.0%
GTCAAGCCACGCACATTGGT+GGG + chr8_2:4512632-4512651 Msa1228890:intron 55.0%
GCTTCGAAGGCCTTTGTGCA+TGG + chr8_2:4514874-4514893 Msa1228890:three_prime_UTR 55.0%
TGCATGCTGAATGGCAGGCA+TGG - chr8_2:4514923-4514942 None:intergenic 55.0%
GGAGGCTTCCGAACGCTTAA+CGG + chr8_2:4515126-4515145 Msa1228890:three_prime_UTR 55.0%
GCTTAACGGTGATGTGAGCC+AGG + chr8_2:4515140-4515159 Msa1228890:three_prime_UTR 55.0%
GTGCCGAGTCGGGAGGTTAA+GGG - chr8_2:4509905-4509924 None:intergenic 60.0%
GCAGGATCAGCAGCATGGCT+TGG + chr8_2:4510829-4510848 Msa1228890:CDS 60.0%
CTCTCCAAGCACTCCTCCTG+AGG - chr8_2:4511455-4511474 None:intergenic 60.0%
!! CTCAGGAGGAGTGCTTGGAG+AGG + chr8_2:4511453-4511472 Msa1228890:intron 60.0%
GGGAAGGAGATCGTTCCGTG+TGG + chr8_2:4512162-4512181 Msa1228890:CDS 60.0%
GGCAAACGGGTACTCCCACA+CGG - chr8_2:4512180-4512199 None:intergenic 60.0%
GAGTACCCGTTTGCCGTTGC+TGG + chr8_2:4512185-4512204 Msa1228890:CDS 60.0%
GTTGCTCCCACCAATGTGCG+TGG - chr8_2:4512641-4512660 None:intergenic 60.0%
! GGTGCCGAGTCGGGAGGTTA+AGG - chr8_2:4509906-4509925 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 4508702 4515428 4508702 ID=Msa1228890;Name=Msa1228890
chr8_2 mRNA 4508702 4515428 4508702 ID=Msa1228890-mRNA-1;Parent=Msa1228890;Name=Msa1228890-mRNA-1;_AED=0.09;_eAED=0.09;_QI=288|0.85|1|1|1|1|8|594|246
chr8_2 exon 4508702 4509065 4508702 ID=Msa1228890-mRNA-1:exon:1481;Parent=Msa1228890-mRNA-1
chr8_2 exon 4510818 4510927 4510818 ID=Msa1228890-mRNA-1:exon:1482;Parent=Msa1228890-mRNA-1
chr8_2 exon 4511458 4511526 4511458 ID=Msa1228890-mRNA-1:exon:1483;Parent=Msa1228890-mRNA-1
chr8_2 exon 4511666 4511781 4511666 ID=Msa1228890-mRNA-1:exon:1484;Parent=Msa1228890-mRNA-1
chr8_2 exon 4511872 4511926 4511872 ID=Msa1228890-mRNA-1:exon:1485;Parent=Msa1228890-mRNA-1
chr8_2 exon 4512134 4512254 4512134 ID=Msa1228890-mRNA-1:exon:1486;Parent=Msa1228890-mRNA-1
chr8_2 exon 4512839 4512933 4512839 ID=Msa1228890-mRNA-1:exon:1487;Parent=Msa1228890-mRNA-1
chr8_2 exon 4514736 4515428 4514736 ID=Msa1228890-mRNA-1:exon:1488;Parent=Msa1228890-mRNA-1
chr8_2 five_prime_UTR 4508702 4508989 4508702 ID=Msa1228890-mRNA-1:five_prime_utr;Parent=Msa1228890-mRNA-1
chr8_2 CDS 4508990 4509065 4508990 ID=Msa1228890-mRNA-1:cds;Parent=Msa1228890-mRNA-1
chr8_2 CDS 4510818 4510927 4510818 ID=Msa1228890-mRNA-1:cds;Parent=Msa1228890-mRNA-1
chr8_2 CDS 4511458 4511526 4511458 ID=Msa1228890-mRNA-1:cds;Parent=Msa1228890-mRNA-1
chr8_2 CDS 4511666 4511781 4511666 ID=Msa1228890-mRNA-1:cds;Parent=Msa1228890-mRNA-1
chr8_2 CDS 4511872 4511926 4511872 ID=Msa1228890-mRNA-1:cds;Parent=Msa1228890-mRNA-1
chr8_2 CDS 4512134 4512254 4512134 ID=Msa1228890-mRNA-1:cds;Parent=Msa1228890-mRNA-1
chr8_2 CDS 4512839 4512933 4512839 ID=Msa1228890-mRNA-1:cds;Parent=Msa1228890-mRNA-1
chr8_2 CDS 4514736 4514834 4514736 ID=Msa1228890-mRNA-1:cds;Parent=Msa1228890-mRNA-1
chr8_2 three_prime_UTR 4514835 4515428 4514835 ID=Msa1228890-mRNA-1:three_prime_utr;Parent=Msa1228890-mRNA-1
Gene Sequence

>Msa1228890

ATGGATGATAGAGGTGCTTCATTCGTTGCTGTTCGAAGACCCAATCCTCATACCGATACTTGCAATTCTAATTCTGCTGAGGCTGTTGCAGGATCAGCAGCATGGCTTGGTAGAGGTCTGTCTTGTGTCTGTGCACAGAGAAGAGATAGCGACGCGGGTAGCTTTTTTGATTTAACTCTAGCCCAGGAGGAGTGCTTGGAGAGGCTACAGAGACGAATAGAAGTTCCATATGATGGTTCTATAGTTGAGCACCAGGAGGCCCTTAAGGCTTTATGGAAGGTTGCATTTCCCGAAGAAGAACTTCGTGGCTTAATATCGGAGCAGTGGAAGGAAATGGGTTGGCAAGGGAAGGATCCATCAACAGATTTTAGGGGTGGTGGTTTTATTTCTTTGGAGAATTTTCTGTTCTTTGCTAGGAATTTCCCGAAATCCTTCCAGGATCTGTTATGGAAGCGGGAAGGAGATCGTTCCGTGTGGGAGTACCCGTTTGCCGTTGCTGGTGTTAACATCACATTCATGCTGGTGCAGATGCTTGATCTTGAAGCAGAAAATGAATCAGCTTTTGATCTTCTCTACTGCATAGCTTTCAAGCTGATGGATCACCAATGGCTTTCTATGCGTGCCTCATACATGGATTTCAATACAGTGATGAAATCTACACGTCAAGAGCTAGAAAAAGAGCTTCTTCAAGAAGTTTCGCATCTTGAAGATTTACCCTCATACAAACTACTTTCACGATAG
Protein sequence

>Msa1228890

MDDRGASFVAVRRPNPHTDTCNSNSAEAVAGSAAWLGRGLSCVCAQRRDSDAGSFFDLTLAQEECLERLQRRIEVPYDGSIVEHQEALKALWKVAFPEEELRGLISEQWKEMGWQGKDPSTDFRGGGFISLENFLFFARNFPKSFQDLLWKREGDRSVWEYPFAVAGVNITFMLVQMLDLEAENESAFDLLYCIAFKLMDHQWLSMRASYMDFNTVMKSTRQELEKELLQEVSHLEDLPSYKLLSR*