AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0986920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0986920 MtrunA17_Chr6g0465411 95.876 194 7 1 1 193 1 194 2.48e-137 381
Msa0986920 MtrunA17_Chr1g0201111 50.000 178 84 2 19 192 2 178 1.23e-60 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0986920 AT1G71780.1 60.847 189 60 4 6 193 22 197 1.01e-75 226

Find 65 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATTTGCTCATCCATTC+TGG 0.210616 6_4:+36275527 None:intergenic
AAGAAAGGAATCGGACATTT+TGG 0.255089 6_4:-36280471 Msa0986920:five_prime_UTR
TGCGGTGTCGCCGTCGTTAC+CGG 0.272903 6_4:+36280266 None:intergenic
TCGAAACTATTACTATCATT+AGG 0.295309 6_4:+36275558 None:intergenic
GTGTTCGTGGTGTTCCTGTT+AGG 0.311079 6_4:-36280068 Msa0986920:CDS
GTTAGTTATATCATCATAAA+TGG 0.312204 6_4:-36275314 Msa0986920:three_prime_UTR
GAACTTCTCTCCATGGGTCT+TGG 0.328731 6_4:-36275492 Msa0986920:CDS
GGTGCTGTTGTTTATCTTGA+TGG 0.329828 6_4:-36280003 Msa0986920:CDS
CGAAACTATTACTATCATTA+GGG 0.344272 6_4:+36275559 None:intergenic
CTCCTGGGAACTTCTCTCCA+TGG 0.357592 6_4:-36275499 Msa0986920:CDS
TCCTGGGAACTTCTCTCCAT+GGG 0.376489 6_4:-36275498 Msa0986920:CDS
AAGTAGAGATCCATTTATTC+CGG 0.381633 6_4:-36280218 Msa0986920:CDS
TTCGATTTCGGATGTGAGTA+AGG 0.387206 6_4:+36280314 None:intergenic
TTCCTAGGATTAAACCTAAC+AGG 0.389199 6_4:+36280054 None:intergenic
TACTGTCTGCAGTTTGCATT+GGG 0.399017 6_4:-36275137 Msa0986920:three_prime_UTR
CGATTACCAGGATCTTGATT+GGG 0.405219 6_4:-36275595 Msa0986920:CDS
GTTGCTTATTTGAAGCATAT+AGG 0.408508 6_4:-36275179 Msa0986920:three_prime_UTR
TAAATCAGCGTTGGGAGGTT+GGG 0.413572 6_4:-36280169 Msa0986920:CDS
AATAAATGGATCTCTACTTC+AGG 0.416398 6_4:+36280222 None:intergenic
AAACATCAATCATTATGAAT+AGG 0.418852 6_4:+36275098 None:intergenic
CCGATTACCAGGATCTTGAT+TGG 0.418886 6_4:-36275596 Msa0986920:CDS
CTACTTCAGGTACCTTTGTT+CGG 0.419100 6_4:+36280235 None:intergenic
GAAGAAATCACCACCGCAAC+CGG 0.422292 6_4:-36280285 Msa0986920:CDS
TATATCATCATAAATGGTAT+AGG 0.430102 6_4:-36275308 Msa0986920:three_prime_UTR
CATTTATTCCGGCAAGGAAA+AGG 0.432348 6_4:-36280207 Msa0986920:CDS
CCAATCAAGATCCTGGTAAT+CGG 0.443266 6_4:+36275596 None:intergenic
CTTTGTTCGGACATGCTTTG+CGG 0.448560 6_4:+36280248 None:intergenic
GATTGAAGTTTGCGCAAGAA+AGG 0.450294 6_4:-36280486 Msa0986920:five_prime_UTR
ACCCATGGAGAGAAGTTCCC+AGG 0.463649 6_4:+36275497 None:intergenic
CTTTGTTCTCTTTCTCATGC+GGG 0.466577 6_4:+36275448 None:intergenic
AAAACAGACCTTCCATTCCT+AGG 0.466614 6_4:+36280039 None:intergenic
AGCGTTGGGAGGTTGGGAAC+AGG 0.477228 6_4:-36280163 Msa0986920:CDS
CCTTTGTTCTCTTTCTCATG+CGG 0.479369 6_4:+36275447 None:intergenic
GTCGCCGTCGTTACCGGTTG+CGG 0.484980 6_4:+36280272 None:intergenic
ATACTGTCTGCAGTTTGCAT+TGG 0.487604 6_4:-36275138 Msa0986920:three_prime_UTR
TTCCTGTTAGGTTTAATCCT+AGG 0.496073 6_4:-36280056 Msa0986920:CDS
TTAAATCAGCGTTGGGAGGT+TGG 0.505572 6_4:-36280170 Msa0986920:CDS
AGTTTGCGCAAGAAAGGAAT+CGG 0.507139 6_4:-36280480 Msa0986920:five_prime_UTR
GTTAGGTTTAATCCTAGGAA+TGG 0.509296 6_4:-36280051 Msa0986920:CDS
GTGGTGTTTAAATCAGCGTT+GGG 0.513647 6_4:-36280177 Msa0986920:CDS
CACTAATTAAACCGATTACC+AGG 0.516040 6_4:-36275607 Msa0986920:CDS
GAACAGGATCAGCTTGAAGT+TGG 0.519381 6_4:-36280147 Msa0986920:CDS
AATCATCAGACACGTGTTCG+TGG 0.521818 6_4:-36280081 Msa0986920:CDS
TGCTACCCCAATCAAGATCC+TGG 0.527300 6_4:+36275589 None:intergenic
GCTCTTGTTCAACAGAGTAA+AGG 0.537430 6_4:-36275241 Msa0986920:three_prime_UTR
GCTGATTTAAACACCACAAT+CGG 0.540207 6_4:+36280183 None:intergenic
AATGATAGTAATAGTTTCGA+GGG 0.540775 6_4:-36275555 Msa0986920:CDS
TGTGGTGTTTAAATCAGCGT+TGG 0.560050 6_4:-36280178 Msa0986920:CDS
GGTTTAATCCTAGGAATGGA+AGG 0.569067 6_4:-36280047 Msa0986920:CDS
TTATCTTGATGGAGAACCCA+AGG 0.571503 6_4:-36279992 Msa0986920:intron
TAATGATAGTAATAGTTTCG+AGG 0.576113 6_4:-36275556 Msa0986920:CDS
TCGATTTCGGATGTGAGTAA+GGG 0.581793 6_4:+36280315 None:intergenic
GAGATCCATTTATTCCGGCA+AGG 0.593898 6_4:-36280213 Msa0986920:CDS
GGTGATATTCTTGAGAAACA+TGG 0.597994 6_4:-36280126 Msa0986920:CDS
GCCGTCGTTACCGGTTGCGG+TGG 0.600924 6_4:+36280275 None:intergenic
TTTCGAGGGAAAGTCCAGAA+TGG 0.605851 6_4:-36275541 Msa0986920:CDS
CGCAAAGCATGTCCGAACAA+AGG 0.608336 6_4:-36280247 Msa0986920:CDS
GATTACCAGGATCTTGATTG+GGG 0.611764 6_4:-36275594 Msa0986920:CDS
AAGAAGACACAGTGACAGAG+TGG 0.613790 6_4:-36280408 Msa0986920:five_prime_UTR
ACTACGCAAGCCAAGACCCA+TGG 0.615167 6_4:+36275482 None:intergenic
GTGTTTAAATCAGCGTTGGG+AGG 0.631179 6_4:-36280174 Msa0986920:CDS
GCAAGGAAAAGGACCGATTG+TGG 0.632906 6_4:-36280196 Msa0986920:CDS
ACCACCGCAACCGGTAACGA+CGG 0.642588 6_4:-36280276 Msa0986920:CDS
ATCATCGTCGAATCAAACAA+TGG 0.661830 6_4:-36280358 Msa0986920:exon
CCGCATGAGAAAGAGAACAA+AGG 0.682254 6_4:-36275447 Msa0986920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAAAAAAAAAAAAAA+TGG + chr6_4:36275646-36275665 None:intergenic 0.0%
!!! TTTTGCAAAAAAAATAAAAA+AGG - chr6_4:36277221-36277240 Msa0986920:intron 10.0%
!!! TTTTATCTTAAAACTTTTTA+AGG - chr6_4:36279047-36279066 Msa0986920:intron 10.0%
!!! ATTAATTTGTGTTTTTAAGT+TGG - chr6_4:36275672-36275691 Msa0986920:intron 15.0%
!! GTTTAATAATTTGAGAAATT+AGG - chr6_4:36276087-36276106 Msa0986920:intron 15.0%
!!! GAAGAAGTTTTTTTTAAAAA+AGG + chr6_4:36277329-36277348 None:intergenic 15.0%
!! CAATAATCATTAATTATGAT+AGG + chr6_4:36277599-36277618 None:intergenic 15.0%
!! TCATAATTAATGATTATTGT+TGG - chr6_4:36277600-36277619 Msa0986920:intron 15.0%
!! AAAATCTGAAAAATGAAAAA+TGG + chr6_4:36279838-36279857 None:intergenic 15.0%
!!! TTCTCTAAATTGAAATTTTT+TGG - chr6_4:36280264-36280283 Msa0986920:CDS 15.0%
!! AAAAAATTAATATCAACTCG+AGG - chr6_4:36275083-36275102 Msa0986920:three_prime_UTR 20.0%
!!! GTGATATGTTATTTAGTAAA+AGG + chr6_4:36276326-36276345 None:intergenic 20.0%
!! TTTCCATTTATACATTATGT+TGG - chr6_4:36276670-36276689 Msa0986920:intron 20.0%
!! GAAGATAATAACTAAGTAAT+AGG + chr6_4:36277050-36277069 None:intergenic 20.0%
!! TTCATAATTGTTGAAATTTG+GGG + chr6_4:36277805-36277824 None:intergenic 20.0%
!! GTTCATAATTGTTGAAATTT+GGG + chr6_4:36277806-36277825 None:intergenic 20.0%
!! AGTTCATAATTGTTGAAATT+TGG + chr6_4:36277807-36277826 None:intergenic 20.0%
!!! TAGTTTAATGTTTGATTTAG+AGG - chr6_4:36277827-36277846 Msa0986920:intron 20.0%
!!! TTTACTTTTTACCTATTAGT+AGG - chr6_4:36277900-36277919 Msa0986920:intron 20.0%
!! TAAATATTAACCCCTTTATA+GGG + chr6_4:36278053-36278072 None:intergenic 20.0%
!! ATAAATATTAACCCCTTTAT+AGG + chr6_4:36278054-36278073 None:intergenic 20.0%
!!! TTTATGTACTCTTTTGTATA+AGG - chr6_4:36278069-36278088 Msa0986920:intron 20.0%
!! AATGATTAGTGTAATATGAT+TGG + chr6_4:36278101-36278120 None:intergenic 20.0%
!!! TTTGATTTTTTTAGACTAGT+TGG - chr6_4:36278258-36278277 Msa0986920:intron 20.0%
!! TCAAATTCTAATAGATATCT+TGG + chr6_4:36278367-36278386 None:intergenic 20.0%
!! CTATTAGAATTTGATTATAC+CGG - chr6_4:36278373-36278392 Msa0986920:intron 20.0%
!! ATCTAATAGATTCAAATTGA+TGG + chr6_4:36278489-36278508 None:intergenic 20.0%
!! TTTATGCTTATTTACTTCAT+TGG - chr6_4:36278599-36278618 Msa0986920:intron 20.0%
!!! TATATTTTAAAGGGTGTTTT+TGG - chr6_4:36278836-36278855 Msa0986920:intron 20.0%
!!! TTTAATAAAGCATTGTTTAG+TGG + chr6_4:36278965-36278984 None:intergenic 20.0%
!!! ATCTTAAAACTTTTTAAGGT+AGG - chr6_4:36279051-36279070 Msa0986920:intron 20.0%
!! ATAATTGACCAACTTAAAAA+AGG + chr6_4:36279124-36279143 None:intergenic 20.0%
!! GAATATTGAAAAGAAGAAAT+GGG + chr6_4:36279366-36279385 None:intergenic 20.0%
!!! ATTTCTTCTTTTCAATATTC+CGG - chr6_4:36279366-36279385 Msa0986920:intron 20.0%
!!! TGTTTTCTTTTCATCAAAAT+TGG - chr6_4:36279420-36279439 Msa0986920:intron 20.0%
!! GTTAGTTATATCATCATAAA+TGG - chr6_4:36280289-36280308 Msa0986920:CDS 20.0%
!! TATATCATCATAAATGGTAT+AGG - chr6_4:36280295-36280314 Msa0986920:CDS 20.0%
!! AAACATCAATCATTATGAAT+AGG + chr6_4:36280508-36280527 None:intergenic 20.0%
! AAAATGGAAAAACAAACCTT+GGG + chr6_4:36275630-36275649 None:intergenic 25.0%
! AAAAATGGAAAAACAAACCT+TGG + chr6_4:36275631-36275650 None:intergenic 25.0%
!! AATGTTTGTGATTTTGTTGA+AGG - chr6_4:36275706-36275725 Msa0986920:intron 25.0%
!! ATGTTTGTGATTTTGTTGAA+GGG - chr6_4:36275707-36275726 Msa0986920:intron 25.0%
!! TTTGTTTGTGTTTTCTATGT+TGG - chr6_4:36275746-36275765 Msa0986920:intron 25.0%
! AACAAACATAACCAATTGAT+TGG + chr6_4:36275890-36275909 None:intergenic 25.0%
! AATTTGAGAAATTAGGACTT+AGG - chr6_4:36276094-36276113 Msa0986920:intron 25.0%
!! TAGTTTGGTTTATAGTGTTA+GGG - chr6_4:36276397-36276416 Msa0986920:intron 25.0%
! GTTCCAACATAATGTATAAA+TGG + chr6_4:36276676-36276695 None:intergenic 25.0%
! ACTAATTTAGTAATACGAAG+AGG + chr6_4:36276704-36276723 None:intergenic 25.0%
! GGTAAAGAAAACATGATATT+AGG + chr6_4:36276728-36276747 None:intergenic 25.0%
! ATAATGTTATGATGAAAGAG+TGG + chr6_4:36276894-36276913 None:intergenic 25.0%
!! TATTTCTTTCCTTTTCTATC+TGG - chr6_4:36276924-36276943 Msa0986920:intron 25.0%
! GTAATAGGAAAACTAAACTT+AGG + chr6_4:36277035-36277054 None:intergenic 25.0%
! TTATTATCTTCAACGTTTGT+AGG - chr6_4:36277059-36277078 Msa0986920:intron 25.0%
!! CTATATTTCTAATTCTTTGC+TGG - chr6_4:36277244-36277263 Msa0986920:intron 25.0%
!! CATGATTTTCCTATTTATTC+AGG - chr6_4:36278011-36278030 Msa0986920:intron 25.0%
! ATATTTCTTCAGTTTGGTAT+TGG + chr6_4:36278160-36278179 None:intergenic 25.0%
! ATACCAAACTGAAGAAATAT+TGG - chr6_4:36278160-36278179 Msa0986920:intron 25.0%
! TACCAAACTGAAGAAATATT+GGG - chr6_4:36278161-36278180 Msa0986920:intron 25.0%
! AACTAAACTGTAATTACTAC+AGG + chr6_4:36278193-36278212 None:intergenic 25.0%
!! ATCTTATTGACTAATTGTTC+CGG - chr6_4:36278309-36278328 Msa0986920:intron 25.0%
! AAATCTTTGCAAAGCTTAAA+TGG - chr6_4:36278438-36278457 Msa0986920:intron 25.0%
! AATCTTTGCAAAGCTTAAAT+GGG - chr6_4:36278439-36278458 Msa0986920:intron 25.0%
!! GCATCAAGTTATGTTTTATA+CGG - chr6_4:36278544-36278563 Msa0986920:intron 25.0%
!! TCTGGTTTCCTATATAAAAA+AGG - chr6_4:36278645-36278664 Msa0986920:intron 25.0%
!!! GTGGATTTCCTTTTTTATAT+AGG + chr6_4:36278656-36278675 None:intergenic 25.0%
! TATAAAAAAGGAAATCCACA+TGG - chr6_4:36278657-36278676 Msa0986920:intron 25.0%
!!! TGCAACGGTTATATTTTAAA+GGG - chr6_4:36278827-36278846 Msa0986920:intron 25.0%
! TAAGATAAAATGTGATGCTT+CGG + chr6_4:36279037-36279056 None:intergenic 25.0%
! TCAATTATTAAAATCTGTCG+AGG - chr6_4:36279136-36279155 Msa0986920:intron 25.0%
! TTAGTTATGTTTCAAACAGT+GGG + chr6_4:36279164-36279183 None:intergenic 25.0%
! GGAATATTGAAAAGAAGAAA+TGG + chr6_4:36279367-36279386 None:intergenic 25.0%
! TGAGAAAAACATTGGTATAT+AGG + chr6_4:36279710-36279729 None:intergenic 25.0%
!!! TCATTTTTCAGATTTTGTGA+AGG - chr6_4:36279842-36279861 Msa0986920:intron 25.0%
!! GTAGTTTCTAGAAGTTTAAT+CGG + chr6_4:36279928-36279947 None:intergenic 25.0%
! CGAAACTATTACTATCATTA+GGG + chr6_4:36280047-36280066 None:intergenic 25.0%
! TCGAAACTATTACTATCATT+AGG + chr6_4:36280048-36280067 None:intergenic 25.0%
! TAATGATAGTAATAGTTTCG+AGG - chr6_4:36280047-36280066 Msa0986920:CDS 25.0%
! AATGATAGTAATAGTTTCGA+GGG - chr6_4:36280048-36280067 Msa0986920:CDS 25.0%
! TTCTTTTGTATGTTGTGTTG+TGG + chr6_4:36275163-36275182 None:intergenic 30.0%
TTCTTCTTCTTCTTCGATTT+CGG + chr6_4:36275304-36275323 None:intergenic 30.0%
AATAAATGGATCTCTACTTC+AGG + chr6_4:36275384-36275403 None:intergenic 30.0%
AAGTAGAGATCCATTTATTC+CGG - chr6_4:36275385-36275404 Msa0986920:three_prime_UTR 30.0%
!!! AAGGTCTGTTTTGACTTATA+GGG - chr6_4:36275575-36275594 Msa0986920:CDS 30.0%
! TAATCTAGAGTTCATTGGTT+GGG - chr6_4:36275769-36275788 Msa0986920:intron 30.0%
! ACCATTTTAAGCCAATCAAT+TGG - chr6_4:36275876-36275895 Msa0986920:intron 30.0%
!! ACCAATTGATTGGCTTAAAA+TGG + chr6_4:36275880-36275899 None:intergenic 30.0%
CTTGAAACAAAAGTCATCTA+AGG + chr6_4:36275934-36275953 None:intergenic 30.0%
!! CTTAGATGACTTTTGTTTCA+AGG - chr6_4:36275932-36275951 Msa0986920:intron 30.0%
! ATTACTTCCACAAACTTGTT+TGG - chr6_4:36276012-36276031 Msa0986920:intron 30.0%
ATCATTAAGAGCCTAACAAA+TGG + chr6_4:36276188-36276207 None:intergenic 30.0%
! GAACCAATATTTGTTAATCG+CGG - chr6_4:36276225-36276244 Msa0986920:intron 30.0%
! TGATTTGTCCAAAATCTACT+TGG - chr6_4:36276356-36276375 Msa0986920:intron 30.0%
! GTAGTTTGGTTTATAGTGTT+AGG - chr6_4:36276396-36276415 Msa0986920:intron 30.0%
TATGTTAGACCAACAATCTA+AGG - chr6_4:36276422-36276441 Msa0986920:intron 30.0%
ATGTTAGACCAACAATCTAA+GGG - chr6_4:36276423-36276442 Msa0986920:intron 30.0%
CTAAATGGTGAAAACTGAAA+AGG - chr6_4:36276507-36276526 Msa0986920:intron 30.0%
! CACAATAAGAGTATATCGAA+TGG + chr6_4:36276770-36276789 None:intergenic 30.0%
CATTCGATATACTCTTATTG+TGG - chr6_4:36276768-36276787 Msa0986920:intron 30.0%
TAAAGCATGATCATGATAGT+TGG - chr6_4:36276823-36276842 Msa0986920:intron 30.0%
AGGATAGAAATCATTACAAC+GGG + chr6_4:36276859-36276878 None:intergenic 30.0%
GAGGATAGAAATCATTACAA+CGG + chr6_4:36276860-36276879 None:intergenic 30.0%
CAATAATGACCAGATAGAAA+AGG + chr6_4:36276936-36276955 None:intergenic 30.0%
!! AACTATGTTGCTCTAAAAGT+AGG + chr6_4:36276960-36276979 None:intergenic 30.0%
ATTTCTAATTCTTTGCTGGT+TGG - chr6_4:36277248-36277267 Msa0986920:intron 30.0%
CTAACTCATCCTTACAAAAA+CGG + chr6_4:36277781-36277800 None:intergenic 30.0%
AATCGTAAGATCCTACTAAT+AGG + chr6_4:36277914-36277933 None:intergenic 30.0%
GGAACAAATCCTGAATAAAT+AGG + chr6_4:36278023-36278042 None:intergenic 30.0%
TTCCATGATATCCCTATAAA+GGG - chr6_4:36278039-36278058 Msa0986920:intron 30.0%
ACCAAACTGAAGAAATATTG+GGG - chr6_4:36278162-36278181 Msa0986920:intron 30.0%
TGTACATAAAACATAACAGC+CGG + chr6_4:36278395-36278414 None:intergenic 30.0%
ATCTTTGCAAAGCTTAAATG+GGG - chr6_4:36278440-36278459 Msa0986920:intron 30.0%
! ACATAACTTGATGCTTTTGA+GGG + chr6_4:36278538-36278557 None:intergenic 30.0%
! AACATAACTTGATGCTTTTG+AGG + chr6_4:36278539-36278558 None:intergenic 30.0%
! CATAAATGATGCTTGTTACA+AGG + chr6_4:36278585-36278604 None:intergenic 30.0%
!!! AGACTTTAGAGTCTTTGTTT+TGG - chr6_4:36278753-36278772 Msa0986920:intron 30.0%
AAACATCCTAACAAAAACCT+TGG - chr6_4:36278797-36278816 Msa0986920:intron 30.0%
TAAAATATAACCGTTGCAGA+GGG + chr6_4:36278825-36278844 None:intergenic 30.0%
TTAAAATATAACCGTTGCAG+AGG + chr6_4:36278826-36278845 None:intergenic 30.0%
!! CTGCAACGGTTATATTTTAA+AGG - chr6_4:36278826-36278845 Msa0986920:intron 30.0%
AAGATAAAATGTGATGCTTC+GGG + chr6_4:36279036-36279055 None:intergenic 30.0%
ACCAACTTAAAAAAGGCTAT+TGG + chr6_4:36279117-36279136 None:intergenic 30.0%
GTTAGTTATGTTTCAAACAG+TGG + chr6_4:36279165-36279184 None:intergenic 30.0%
AAAAGAAAACATCAGCCTAT+GGG + chr6_4:36279411-36279430 None:intergenic 30.0%
! TCTTTTCATCAAAATTGGCT+TGG - chr6_4:36279425-36279444 Msa0986920:intron 30.0%
CAGAGTTTACAAAGAACTTT+GGG + chr6_4:36279571-36279590 None:intergenic 30.0%
! TAAACTTCTAGAAACTACTG+TGG - chr6_4:36279930-36279949 Msa0986920:intron 30.0%
!!! CGCTTAAACTTTTATTTTGC+AGG - chr6_4:36279970-36279989 Msa0986920:intron 30.0%
! GTTGCTTATTTGAAGCATAT+AGG - chr6_4:36280424-36280443 Msa0986920:five_prime_UTR 30.0%
! AAGAAAGGAATCGGACATTT+TGG - chr6_4:36275132-36275151 Msa0986920:three_prime_UTR 35.0%
ATCATCGTCGAATCAAACAA+TGG - chr6_4:36275245-36275264 Msa0986920:three_prime_UTR 35.0%
! GCTGATTTAAACACCACAAT+CGG + chr6_4:36275423-36275442 None:intergenic 35.0%
GGTGATATTCTTGAGAAACA+TGG - chr6_4:36275477-36275496 Msa0986920:CDS 35.0%
TTCCTGTTAGGTTTAATCCT+AGG - chr6_4:36275547-36275566 Msa0986920:CDS 35.0%
TTCCTAGGATTAAACCTAAC+AGG + chr6_4:36275552-36275571 None:intergenic 35.0%
GTTAGGTTTAATCCTAGGAA+TGG - chr6_4:36275552-36275571 Msa0986920:CDS 35.0%
!!! GAAGGTCTGTTTTGACTTAT+AGG - chr6_4:36275574-36275593 Msa0986920:CDS 35.0%
!!! TCTGTTTTGACTTATAGGGA+TGG - chr6_4:36275579-36275598 Msa0986920:CDS 35.0%
! TGATTTTGTTGAAGGGTCAT+TGG - chr6_4:36275714-36275733 Msa0986920:intron 35.0%
! TTGAAGGGTCATTGGTAATT+TGG - chr6_4:36275722-36275741 Msa0986920:intron 35.0%
!! GTTGGTAATCTAGAGTTCAT+TGG - chr6_4:36275764-36275783 Msa0986920:intron 35.0%
! GTAATCTAGAGTTCATTGGT+TGG - chr6_4:36275768-36275787 Msa0986920:intron 35.0%
! TTCCACAAACTTGTTTGGTA+AGG - chr6_4:36276017-36276036 Msa0986920:intron 35.0%
AACCTTACCAAACAAGTTTG+TGG + chr6_4:36276022-36276041 None:intergenic 35.0%
ATTGAATGTAATCACCACGT+TGG - chr6_4:36276121-36276140 Msa0986920:intron 35.0%
TTAAGAGCCTAACAAATGGT+TGG + chr6_4:36276184-36276203 None:intergenic 35.0%
GATCCGCGATTAACAAATAT+TGG + chr6_4:36276231-36276250 None:intergenic 35.0%
! TATTTGTTAATCGCGGATCA+TGG - chr6_4:36276232-36276251 Msa0986920:intron 35.0%
! ATTTGTTAATCGCGGATCAT+GGG - chr6_4:36276233-36276252 Msa0986920:intron 35.0%
!! ACTGAAAAGGCATTGAAGAA+AGG - chr6_4:36276520-36276539 Msa0986920:intron 35.0%
!! CTGAAAAGGCATTGAAGAAA+GGG - chr6_4:36276521-36276540 Msa0986920:intron 35.0%
!! TGAAAAGGCATTGAAGAAAG+GGG - chr6_4:36276522-36276541 Msa0986920:intron 35.0%
GGATAGAAATCATTACAACG+GGG + chr6_4:36276858-36276877 None:intergenic 35.0%
! TTAGAGCAACATAGTTTGTC+TGG - chr6_4:36276964-36276983 Msa0986920:intron 35.0%
!!! ACAGCACAGAAGCTTTATTT+TGG + chr6_4:36277123-36277142 None:intergenic 35.0%
TAAGATCGCACACAAGTAAT+TGG - chr6_4:36277195-36277214 Msa0986920:intron 35.0%
AAGATCGCACACAAGTAATT+GGG - chr6_4:36277196-36277215 Msa0986920:intron 35.0%
TATGATTGTAATCACAGGCA+GGG + chr6_4:36277399-36277418 None:intergenic 35.0%
GTGTGTATGATTGTAATCAC+AGG + chr6_4:36277404-36277423 None:intergenic 35.0%
! TTCTATTTCTTGCGATCATG+TGG - chr6_4:36277461-36277480 Msa0986920:intron 35.0%
AAACAAAGAAACCAGCACTA+CGG + chr6_4:36277495-36277514 None:intergenic 35.0%
!! TTTCATTGTGTTGGCTTTGA+CGG - chr6_4:36277702-36277721 Msa0986920:intron 35.0%
GAGTTCTATCTATCTGATGT+GGG + chr6_4:36277740-36277759 None:intergenic 35.0%
AGAGTTCTATCTATCTGATG+TGG + chr6_4:36277741-36277760 None:intergenic 35.0%
! CGTTTTTGTAAGGATGAGTT+AGG - chr6_4:36277779-36277798 Msa0986920:intron 35.0%
! ACCGAGAGTCTTTTATAGAT+CGG + chr6_4:36277962-36277981 None:intergenic 35.0%
GTTCCATGATATCCCTATAA+AGG - chr6_4:36278038-36278057 Msa0986920:intron 35.0%
TCCATGATATCCCTATAAAG+GGG - chr6_4:36278040-36278059 Msa0986920:intron 35.0%
ACCCCAATATTTCTTCAGTT+TGG + chr6_4:36278166-36278185 None:intergenic 35.0%
!! TGTTGACTCTCAAGATATAC+AGG + chr6_4:36278218-36278237 None:intergenic 35.0%
! TAGACTAGTTGGTTGTTTGA+TGG - chr6_4:36278269-36278288 Msa0986920:intron 35.0%
ATATCTTGGATAAACCCTCT+TGG + chr6_4:36278353-36278372 None:intergenic 35.0%
GCGAAGGCTATTAGAAAATA+TGG + chr6_4:36278467-36278486 None:intergenic 35.0%
!! TAGATTCAAATTGATGGCGA+AGG + chr6_4:36278483-36278502 None:intergenic 35.0%
CTCATTTAGATAGTCTGTTC+TGG - chr6_4:36278627-36278646 Msa0986920:intron 35.0%
ATACAAATGCAAAAGCCATG+TGG + chr6_4:36278675-36278694 None:intergenic 35.0%
AAAATATAACCGTTGCAGAG+GGG + chr6_4:36278824-36278843 None:intergenic 35.0%
!!! GCCAATAGCCTTTTTTAAGT+TGG - chr6_4:36279113-36279132 Msa0986920:intron 35.0%
!! TCCTCTTTGTTTCGTTTTGA+AGG - chr6_4:36279222-36279241 Msa0986920:intron 35.0%
TCCTTCAAAACGAAACAAAG+AGG + chr6_4:36279226-36279245 None:intergenic 35.0%
!!! GTTTCGTTTTGAAGGATGAA+TGG - chr6_4:36279230-36279249 Msa0986920:intron 35.0%
TGGAGCTTATACATGAACAT+AGG + chr6_4:36279329-36279348 None:intergenic 35.0%
GAAAAGAAAACATCAGCCTA+TGG + chr6_4:36279412-36279431 None:intergenic 35.0%
GCAGAGTTTACAAAGAACTT+TGG + chr6_4:36279572-36279591 None:intergenic 35.0%
!! AATGAAAAATGGATTACCCC+AGG + chr6_4:36279827-36279846 None:intergenic 35.0%
CACTAATTAAACCGATTACC+AGG - chr6_4:36279996-36280015 Msa0986920:CDS 35.0%
! TTGAATTTGCTCATCCATTC+TGG + chr6_4:36280079-36280098 None:intergenic 35.0%
! AGCAAATTCAACTTTTCTCC+TGG - chr6_4:36280088-36280107 Msa0986920:CDS 35.0%
! GCAAATTCAACTTTTCTCCT+GGG - chr6_4:36280089-36280108 Msa0986920:CDS 35.0%
! AAGGATTTTCTAACAAAGCG+CGG - chr6_4:36280175-36280194 Msa0986920:CDS 35.0%
GATTGAAGTTTGCGCAAGAA+AGG - chr6_4:36275117-36275136 Msa0986920:three_prime_UTR 40.0%
AGTTTGCGCAAGAAAGGAAT+CGG - chr6_4:36275123-36275142 Msa0986920:three_prime_UTR 40.0%
TCGATTTCGGATGTGAGTAA+GGG + chr6_4:36275291-36275310 None:intergenic 40.0%
TTCGATTTCGGATGTGAGTA+AGG + chr6_4:36275292-36275311 None:intergenic 40.0%
CTACTTCAGGTACCTTTGTT+CGG + chr6_4:36275371-36275390 None:intergenic 40.0%
! CTTTTCCTTGCCGGAATAAA+TGG + chr6_4:36275398-36275417 None:intergenic 40.0%
CATTTATTCCGGCAAGGAAA+AGG - chr6_4:36275396-36275415 Msa0986920:three_prime_UTR 40.0%
TGTGGTGTTTAAATCAGCGT+TGG - chr6_4:36275425-36275444 Msa0986920:CDS 40.0%
GTGGTGTTTAAATCAGCGTT+GGG - chr6_4:36275426-36275445 Msa0986920:CDS 40.0%
GGTTTAATCCTAGGAATGGA+AGG - chr6_4:36275556-36275575 Msa0986920:CDS 40.0%
AAAACAGACCTTCCATTCCT+AGG + chr6_4:36275567-36275586 None:intergenic 40.0%
!! GGTGCTGTTGTTTATCTTGA+TGG - chr6_4:36275600-36275619 Msa0986920:CDS 40.0%
TTATCTTGATGGAGAACCCA+AGG - chr6_4:36275611-36275630 Msa0986920:CDS 40.0%
GAGTGGAACAATTCTTGATC+AGG + chr6_4:36275807-36275826 None:intergenic 40.0%
GATCAAGAATTGTTCCACTC+AGG - chr6_4:36275807-36275826 Msa0986920:intron 40.0%
ATCTACATGTCAGTCTCATC+TGG + chr6_4:36276064-36276083 None:intergenic 40.0%
TATTCGACATCAACACGTGT+TGG - chr6_4:36276155-36276174 Msa0986920:intron 40.0%
TTGGACACCAACCATTTGTT+AGG - chr6_4:36276174-36276193 Msa0986920:intron 40.0%
! CACTACAGCCAAGTAGATTT+TGG + chr6_4:36276367-36276386 None:intergenic 40.0%
TAGTGCTATAGTCGGTAGTT+TGG - chr6_4:36276382-36276401 Msa0986920:intron 40.0%
TAGACCAACAATCTAAGGGA+AGG - chr6_4:36276427-36276446 Msa0986920:intron 40.0%
GATGGAGGGGTTTAACTAAA+TGG - chr6_4:36276492-36276511 Msa0986920:intron 40.0%
AGCATGATCATGATAGTTGG+TGG - chr6_4:36276826-36276845 Msa0986920:intron 40.0%
TTACCATGATCGTGAGTTCT+TGG - chr6_4:36277144-36277163 Msa0986920:intron 40.0%
ATGATCGTGAGTTCTTGGAT+CGG - chr6_4:36277149-36277168 Msa0986920:intron 40.0%
! TGCTGGTTGGATTGTGTTTA+AGG - chr6_4:36277261-36277280 Msa0986920:intron 40.0%
GTATGATTGTAATCACAGGC+AGG + chr6_4:36277400-36277419 None:intergenic 40.0%
AACAAAGAAACCAGCACTAC+GGG + chr6_4:36277494-36277513 None:intergenic 40.0%
ACCACAAGAAACAGAGGAAA+TGG + chr6_4:36277544-36277563 None:intergenic 40.0%
TGGAAATTCCGCCTTTATTG+CGG - chr6_4:36277620-36277639 Msa0986920:intron 40.0%
CAAACCAAAGGCCACAATTT+AGG + chr6_4:36277660-36277679 None:intergenic 40.0%
!! CAACACAATGAAAGTGTTGG+AGG + chr6_4:36277695-36277714 None:intergenic 40.0%
CTCCAACACTTTCATTGTGT+TGG - chr6_4:36277693-36277712 Msa0986920:intron 40.0%
! AGCCAACACAATGAAAGTGT+TGG + chr6_4:36277698-36277717 None:intergenic 40.0%
!! TTCATTGTGTTGGCTTTGAC+GGG - chr6_4:36277703-36277722 Msa0986920:intron 40.0%
CCTTACAAAAACGGCTTGTA+AGG + chr6_4:36277772-36277791 None:intergenic 40.0%
!!! CCTTACAAGCCGTTTTTGTA+AGG - chr6_4:36277769-36277788 Msa0986920:intron 40.0%
! GTCTTTTATAGATCGGGAGA+GGG + chr6_4:36277955-36277974 None:intergenic 40.0%
! AGTCTTTTATAGATCGGGAG+AGG + chr6_4:36277956-36277975 None:intergenic 40.0%
! CCGAGAGTCTTTTATAGATC+GGG + chr6_4:36277961-36277980 None:intergenic 40.0%
CCCGATCTATAAAAGACTCT+CGG - chr6_4:36277958-36277977 Msa0986920:intron 40.0%
ACCCCTTTATAGGGATATCA+TGG + chr6_4:36278044-36278063 None:intergenic 40.0%
!! AATTGTTCCGGTGTTGTATG+TGG - chr6_4:36278321-36278340 Msa0986920:intron 40.0%
!! ATTGTTCCGGTGTTGTATGT+GGG - chr6_4:36278322-36278341 Msa0986920:intron 40.0%
GATAAACCCACATACAACAC+CGG + chr6_4:36278331-36278350 None:intergenic 40.0%
TGTATGTGGGTTTATCCAAG+AGG - chr6_4:36278335-36278354 Msa0986920:intron 40.0%
GTATGTGGGTTTATCCAAGA+GGG - chr6_4:36278336-36278355 Msa0986920:intron 40.0%
!! ACTTGATGCTTTTGAGGGAA+TGG + chr6_4:36278533-36278552 None:intergenic 40.0%
AAATATAACCGTTGCAGAGG+GGG + chr6_4:36278823-36278842 None:intergenic 40.0%
!!! AGGGTGTTTTTGGTTTTCTG+AGG - chr6_4:36278846-36278865 Msa0986920:intron 40.0%
CAAGGAATAGAGGCTACTAA+AGG + chr6_4:36278897-36278916 None:intergenic 40.0%
TTAGTAGCCTCTATTCCTTG+TGG - chr6_4:36278897-36278916 Msa0986920:intron 40.0%
ACAATCACCACAAGGAATAG+AGG + chr6_4:36278907-36278926 None:intergenic 40.0%
TCTATTCCTTGTGGTGATTG+TGG - chr6_4:36278906-36278925 Msa0986920:intron 40.0%
TTCTCTTTCATTAGCCAGCT+TGG - chr6_4:36278934-36278953 Msa0986920:intron 40.0%
!! AGAGGAATAACAGCTCTAGA+AGG + chr6_4:36279208-36279227 None:intergenic 40.0%
GTTGGGCTACTAACATATGT+TGG + chr6_4:36279272-36279291 None:intergenic 40.0%
TAAGCTCCACTTCAACTCTA+AGG - chr6_4:36279340-36279359 Msa0986920:intron 40.0%
AGAGATGAATTGATCAGGAC+CGG + chr6_4:36279388-36279407 None:intergenic 40.0%
ATGGGAGAGATGAATTGATC+AGG + chr6_4:36279393-36279412 None:intergenic 40.0%
GATCAATTCATCTCTCCCAT+AGG - chr6_4:36279393-36279412 Msa0986920:intron 40.0%
TTGGCCCATTAAATAGCAAG+CGG - chr6_4:36279444-36279463 Msa0986920:intron 40.0%
!! AGTCCCGCTTGCTATTTAAT+GGG + chr6_4:36279451-36279470 None:intergenic 40.0%
!! AAGTCCCGCTTGCTATTTAA+TGG + chr6_4:36279452-36279471 None:intergenic 40.0%
! TGTAACACGTTTGCTGCATA+AGG - chr6_4:36279489-36279508 Msa0986920:intron 40.0%
GATGAACTTCAAGAGGTCTT+TGG + chr6_4:36279520-36279539 None:intergenic 40.0%
! ACCAATGTTTTTCTCAGACG+TGG - chr6_4:36279714-36279733 Msa0986920:intron 40.0%
ACCACGTCTGAGAAAAACAT+TGG + chr6_4:36279718-36279737 None:intergenic 40.0%
TACCAACTTTCTCAAAAGCC+TGG - chr6_4:36279806-36279825 Msa0986920:intron 40.0%
ACCAACTTTCTCAAAAGCCT+GGG - chr6_4:36279807-36279826 Msa0986920:intron 40.0%
GCAGTAGCAAGTTGTGTAAT+TGG - chr6_4:36279875-36279894 Msa0986920:intron 40.0%
! CTTCTAGAAACTACTGTGGT+AGG - chr6_4:36279934-36279953 Msa0986920:intron 40.0%
CCAATCAAGATCCTGGTAAT+CGG + chr6_4:36280010-36280029 None:intergenic 40.0%
CGATTACCAGGATCTTGATT+GGG - chr6_4:36280008-36280027 Msa0986920:CDS 40.0%
GATTACCAGGATCTTGATTG+GGG - chr6_4:36280009-36280028 Msa0986920:CDS 40.0%
CTTTGTTCTCTTTCTCATGC+GGG + chr6_4:36280158-36280177 None:intergenic 40.0%
CCTTTGTTCTCTTTCTCATG+CGG + chr6_4:36280159-36280178 None:intergenic 40.0%
! ATTTTCTAACAAAGCGCGGT+TGG - chr6_4:36280179-36280198 Msa0986920:CDS 40.0%
GCTCTTGTTCAACAGAGTAA+AGG - chr6_4:36280362-36280381 Msa0986920:five_prime_UTR 40.0%
ATACTGTCTGCAGTTTGCAT+TGG - chr6_4:36280465-36280484 Msa0986920:five_prime_UTR 40.0%
TACTGTCTGCAGTTTGCATT+GGG - chr6_4:36280466-36280485 Msa0986920:five_prime_UTR 40.0%
AAGAAGACACAGTGACAGAG+TGG - chr6_4:36275195-36275214 Msa0986920:three_prime_UTR 45.0%
CTTTGTTCGGACATGCTTTG+CGG + chr6_4:36275358-36275377 None:intergenic 45.0%
GAGATCCATTTATTCCGGCA+AGG - chr6_4:36275390-36275409 Msa0986920:three_prime_UTR 45.0%
! GTGTTTAAATCAGCGTTGGG+AGG - chr6_4:36275429-36275448 Msa0986920:CDS 45.0%
! TTAAATCAGCGTTGGGAGGT+TGG - chr6_4:36275433-36275452 Msa0986920:CDS 45.0%
! TAAATCAGCGTTGGGAGGTT+GGG - chr6_4:36275434-36275453 Msa0986920:CDS 45.0%
GAACAGGATCAGCTTGAAGT+TGG - chr6_4:36275456-36275475 Msa0986920:CDS 45.0%
AATCATCAGACACGTGTTCG+TGG - chr6_4:36275522-36275541 Msa0986920:CDS 45.0%
ATACCAACATGACACCAACG+TGG + chr6_4:36276138-36276157 None:intergenic 45.0%
CTTGGCTGTAGTGCTATAGT+CGG - chr6_4:36276374-36276393 Msa0986920:intron 45.0%
AGCTCCTTCCCTTAGATTGT+TGG + chr6_4:36276434-36276453 None:intergenic 45.0%
CTAAGGGAAGGAGCTAGAAT+CGG - chr6_4:36276439-36276458 Msa0986920:intron 45.0%
TAAGGGAAGGAGCTAGAATC+GGG - chr6_4:36276440-36276459 Msa0986920:intron 45.0%
GCATTGAAGAAAGGGGATTC+AGG - chr6_4:36276529-36276548 Msa0986920:intron 45.0%
! AAAGGGGATTCAGGAAGTGT+GGG - chr6_4:36276538-36276557 Msa0986920:intron 45.0%
TGAAAGGGCTGTTAAGGGAA+AGG - chr6_4:36276564-36276583 Msa0986920:intron 45.0%
TCGAATGGAGTAGTCGCATA+GGG + chr6_4:36276755-36276774 None:intergenic 45.0%
ATCGAATGGAGTAGTCGCAT+AGG + chr6_4:36276756-36276775 None:intergenic 45.0%
! GCAACATAGTTTGTCTGGCA+AGG - chr6_4:36276969-36276988 Msa0986920:intron 45.0%
ACGTTTGTAGGATCGTGAGT+TGG - chr6_4:36277071-36277090 Msa0986920:intron 45.0%
CGTTTGTAGGATCGTGAGTT+GGG - chr6_4:36277072-36277091 Msa0986920:intron 45.0%
GATCCAAGAACTCACGATCA+TGG + chr6_4:36277150-36277169 None:intergenic 45.0%
! CATTCACTGTATGATGGAGG+CGG + chr6_4:36277432-36277451 None:intergenic 45.0%
TCGCATTCACTGTATGATGG+AGG + chr6_4:36277435-36277454 None:intergenic 45.0%
CCATCATACAGTGAATGCGA+CGG - chr6_4:36277435-36277454 Msa0986920:intron 45.0%
GGAAATGGCACAAGAAACAG+AGG + chr6_4:36277529-36277548 None:intergenic 45.0%
! GCCATTTCCTCTGTTTCTTG+TGG - chr6_4:36277540-36277559 Msa0986920:intron 45.0%
AAGCACACCACAAGAAACAG+AGG + chr6_4:36277550-36277569 None:intergenic 45.0%
TGTGGTGTGCTTCCTGTTTA+TGG - chr6_4:36277558-36277577 Msa0986920:intron 45.0%
TCCTGTTTATGGCCTCAAAC+AGG - chr6_4:36277569-36277588 Msa0986920:intron 45.0%
CCTGTTTATGGCCTCAAACA+GGG - chr6_4:36277570-36277589 Msa0986920:intron 45.0%
CTGTTTATGGCCTCAAACAG+GGG - chr6_4:36277571-36277590 Msa0986920:intron 45.0%
ACAATTTAGGCAACTAGGGG+CGG + chr6_4:36277647-36277666 None:intergenic 45.0%
GCCACAATTTAGGCAACTAG+GGG + chr6_4:36277650-36277669 None:intergenic 45.0%
GGCCACAATTTAGGCAACTA+GGG + chr6_4:36277651-36277670 None:intergenic 45.0%
AGGCCACAATTTAGGCAACT+AGG + chr6_4:36277652-36277671 None:intergenic 45.0%
GTTGCCTAAATTGTGGCCTT+TGG - chr6_4:36277653-36277672 Msa0986920:intron 45.0%
CTGCAATGAAGGCAAACCAA+AGG + chr6_4:36277672-36277691 None:intergenic 45.0%
!! TCATTGTGTTGGCTTTGACG+GGG - chr6_4:36277704-36277723 Msa0986920:intron 45.0%
CTTCATGTCAGCATGCAAAG+TGG - chr6_4:36278696-36278715 Msa0986920:intron 45.0%
TGCAAAGTGGTCTCAGTATC+AGG - chr6_4:36278709-36278728 Msa0986920:intron 45.0%
ATTCCTTGTGGTGATTGTGG+TGG - chr6_4:36278909-36278928 Msa0986920:intron 45.0%
ATTCCACCACAATCACCACA+AGG + chr6_4:36278915-36278934 None:intergenic 45.0%
!! GTTTAGTGGATTGTCCAAGC+TGG + chr6_4:36278951-36278970 None:intergenic 45.0%
! GGTGTTGTGCTTATGTGTAG+TGG + chr6_4:36279004-36279023 None:intergenic 45.0%
TGATGCTTCGGGTAAATGAG+TGG + chr6_4:36279025-36279044 None:intergenic 45.0%
TATGTTAGTAGCCCAACCCT+TGG - chr6_4:36279275-36279294 Msa0986920:intron 45.0%
ACAGGAAATCACCAAGGGTT+GGG + chr6_4:36279289-36279308 None:intergenic 45.0%
AACAGGAAATCACCAAGGGT+TGG + chr6_4:36279290-36279309 None:intergenic 45.0%
GTCGAACAGGAAATCACCAA+GGG + chr6_4:36279294-36279313 None:intergenic 45.0%
TGTCGAACAGGAAATCACCA+AGG + chr6_4:36279295-36279314 None:intergenic 45.0%
GGTGATTTCCTGTTCGACAT+TGG - chr6_4:36279296-36279315 Msa0986920:intron 45.0%
GCTACTTACCAATGTCGAAC+AGG + chr6_4:36279307-36279326 None:intergenic 45.0%
AATGGGCCTTAGAGTTGAAG+TGG + chr6_4:36279349-36279368 None:intergenic 45.0%
TGGCCCATTAAATAGCAAGC+GGG - chr6_4:36279445-36279464 Msa0986920:intron 45.0%
AACAATGCCACTCAAGAGGA+TGG + chr6_4:36279547-36279566 None:intergenic 45.0%
CCAACTTTCTCAAAAGCCTG+GGG - chr6_4:36279808-36279827 Msa0986920:intron 45.0%
CCGATTACCAGGATCTTGAT+TGG - chr6_4:36280007-36280026 Msa0986920:CDS 45.0%
TTTCGAGGGAAAGTCCAGAA+TGG - chr6_4:36280062-36280081 Msa0986920:CDS 45.0%
CCGCATGAGAAAGAGAACAA+AGG - chr6_4:36280156-36280175 Msa0986920:CDS 45.0%
!! TTTAAAAAAAAAAAAAAACA+GGG + chr6_4:36277291-36277310 None:intergenic 5.0%
!!! TTTTAAAAAAAAAAAAAAAC+AGG + chr6_4:36277292-36277311 None:intergenic 5.0%
GAAGAAATCACCACCGCAAC+CGG - chr6_4:36275318-36275337 Msa0986920:three_prime_UTR 50.0%
CGCAAAGCATGTCCGAACAA+AGG - chr6_4:36275356-36275375 Msa0986920:three_prime_UTR 50.0%
! CAATCGGTCCTTTTCCTTGC+CGG + chr6_4:36275407-36275426 None:intergenic 50.0%
GCAAGGAAAAGGACCGATTG+TGG - chr6_4:36275407-36275426 Msa0986920:exon 50.0%
GTGTTCGTGGTGTTCCTGTT+AGG - chr6_4:36275535-36275554 Msa0986920:CDS 50.0%
AGAGAACACGAGTTCCTGAG+TGG + chr6_4:36275824-36275843 None:intergenic 50.0%
!! TCACCACGTTGGTGTCATGT+TGG - chr6_4:36276132-36276151 Msa0986920:intron 50.0%
CAGCTGTGCTACGACACTAT+AGG - chr6_4:36276285-36276304 Msa0986920:intron 50.0%
! AGCTAGAATCGGGTTGTGTC+TGG - chr6_4:36276450-36276469 Msa0986920:intron 50.0%
TGTGTCTGGCGAAGTCTGTT+AGG - chr6_4:36276464-36276483 Msa0986920:intron 50.0%
TCTGGCGAAGTCTGTTAGGA+GGG - chr6_4:36276468-36276487 Msa0986920:intron 50.0%
GAAGTCTGTTAGGAGGGAGA+TGG - chr6_4:36276474-36276493 Msa0986920:intron 50.0%
TCTGTTAGGAGGGAGATGGA+GGG - chr6_4:36276478-36276497 Msa0986920:intron 50.0%
GAAAGGGGATTCAGGAAGTG+TGG - chr6_4:36276537-36276556 Msa0986920:intron 50.0%
! AGGAAGTGTGGGCAGTGAAA+GGG - chr6_4:36276549-36276568 Msa0986920:intron 50.0%
GGCAGTGAAAGGGCTGTTAA+GGG - chr6_4:36276559-36276578 Msa0986920:intron 50.0%
AGGGCTGTTAAGGGAAAGGA+TGG - chr6_4:36276568-36276587 Msa0986920:intron 50.0%
GCTGTTAAGGGAAAGGATGG+CGG - chr6_4:36276571-36276590 Msa0986920:intron 50.0%
! AGGATGGCGGCTAAAGCTAT+AGG - chr6_4:36276584-36276603 Msa0986920:intron 50.0%
! GGATGGCGGCTAAAGCTATA+GGG - chr6_4:36276585-36276604 Msa0986920:intron 50.0%
GGAGTAGTCGCATAGGGTTA+AGG + chr6_4:36276749-36276768 None:intergenic 50.0%
AAGAGTGGTTGCAATCGACG+AGG + chr6_4:36276879-36276898 None:intergenic 50.0%
! TAGGATCGTGAGTTGGGTCA+TGG - chr6_4:36277078-36277097 Msa0986920:intron 50.0%
! AGGATCGTGAGTTGGGTCAT+GGG - chr6_4:36277079-36277098 Msa0986920:intron 50.0%
CCGTCGCATTCACTGTATGA+TGG + chr6_4:36277438-36277457 None:intergenic 50.0%
! CCCTGTTTGAGGCCATAAAC+AGG + chr6_4:36277573-36277592 None:intergenic 50.0%
ATGATAGGAGCCCCTGTTTG+AGG + chr6_4:36277584-36277603 None:intergenic 50.0%
GCCCCTAGTTGCCTAAATTG+TGG - chr6_4:36277646-36277665 Msa0986920:intron 50.0%
! AGTGTTGGAGGCTGCAATGA+AGG + chr6_4:36277683-36277702 None:intergenic 50.0%
! AGGGGGCCAAGGTTTTTGTT+AGG + chr6_4:36278806-36278825 None:intergenic 50.0%
TACACTGCCGCATTAGTGGA+GGG + chr6_4:36278873-36278892 None:intergenic 50.0%
!! CTGTTTCTGTCACGCTATGC+TGG + chr6_4:36279077-36279096 None:intergenic 50.0%
GCAGCAAACGTGTTACAACC+AGG + chr6_4:36279486-36279505 None:intergenic 50.0%
TGGCGTGGATGAACTTCAAG+AGG + chr6_4:36279527-36279546 None:intergenic 50.0%
TCACGAGGATAGGAAGGGTT+AGG - chr6_4:36279744-36279763 Msa0986920:intron 50.0%
!! CCCCAGGCTTTTGAGAAAGT+TGG + chr6_4:36279811-36279830 None:intergenic 50.0%
TGCTACCCCAATCAAGATCC+TGG + chr6_4:36280017-36280036 None:intergenic 50.0%
TCCTGGGAACTTCTCTCCAT+GGG - chr6_4:36280105-36280124 Msa0986920:CDS 50.0%
GAACTTCTCTCCATGGGTCT+TGG - chr6_4:36280111-36280130 Msa0986920:CDS 50.0%
GTCTGGCGAAGTCTGTTAGG+AGG - chr6_4:36276467-36276486 Msa0986920:intron 55.0%
GTCTGTTAGGAGGGAGATGG+AGG - chr6_4:36276477-36276496 Msa0986920:intron 55.0%
CTGTTAGGAGGGAGATGGAG+GGG - chr6_4:36276479-36276498 Msa0986920:intron 55.0%
! CAGGAAGTGTGGGCAGTGAA+AGG - chr6_4:36276548-36276567 Msa0986920:intron 55.0%
GGGCAGTGAAAGGGCTGTTA+AGG - chr6_4:36276558-36276577 Msa0986920:intron 55.0%
!! TTGTGTTGGCTTTGACGGGG+TGG - chr6_4:36277707-36277726 Msa0986920:intron 55.0%
CTGAGGTCCCTCCACTAATG+CGG - chr6_4:36278863-36278882 Msa0986920:intron 55.0%
CTACACTGCCGCATTAGTGG+AGG + chr6_4:36278874-36278893 None:intergenic 55.0%
AGGCTACACTGCCGCATTAG+TGG + chr6_4:36278877-36278896 None:intergenic 55.0%
GGGACTTCAGCTTCTTCACC+TGG - chr6_4:36279465-36279484 Msa0986920:intron 55.0%
ATCCACGCCATCCTCTTGAG+TGG - chr6_4:36279537-36279556 Msa0986920:intron 55.0%
GGGCAACAATGCCACTCAAG+AGG + chr6_4:36279551-36279570 None:intergenic 55.0%
TGGTTCCTCGTCACGAGGAT+AGG - chr6_4:36279734-36279753 Msa0986920:intron 55.0%
TCCTCGTCACGAGGATAGGA+AGG - chr6_4:36279738-36279757 Msa0986920:intron 55.0%
CCTCGTCACGAGGATAGGAA+GGG - chr6_4:36279739-36279758 Msa0986920:intron 55.0%
CTCCTGGGAACTTCTCTCCA+TGG - chr6_4:36280104-36280123 Msa0986920:CDS 55.0%
ACCCATGGAGAGAAGTTCCC+AGG + chr6_4:36280109-36280128 None:intergenic 55.0%
ACTACGCAAGCCAAGACCCA+TGG + chr6_4:36280124-36280143 None:intergenic 55.0%
ACCACCGCAACCGGTAACGA+CGG - chr6_4:36275327-36275346 Msa0986920:three_prime_UTR 60.0%
! AGCGTTGGGAGGTTGGGAAC+AGG - chr6_4:36275440-36275459 Msa0986920:CDS 60.0%
! CTGTATGATGGAGGCGGCGA+CGG + chr6_4:36277426-36277445 None:intergenic 60.0%
CTAGGGGCGGACCGCAATAA+AGG + chr6_4:36277634-36277653 None:intergenic 60.0%
AACCTTGGCCCCCTCTGCAA+CGG - chr6_4:36278812-36278831 Msa0986920:intron 60.0%
TGCCACTCAAGAGGATGGCG+TGG + chr6_4:36279542-36279561 None:intergenic 60.0%
AGACGTGGTTCCTCGTCACG+AGG - chr6_4:36279729-36279748 Msa0986920:intron 60.0%
CCCTTCCTATCCTCGTGACG+AGG + chr6_4:36279742-36279761 None:intergenic 60.0%
! GTCGCCGTCGTTACCGGTTG+CGG + chr6_4:36275334-36275353 None:intergenic 65.0%
!! TGCGGTGTCGCCGTCGTTAC+CGG + chr6_4:36275340-36275359 None:intergenic 65.0%
TGGCGTGCTTCCCGTAGTGC+TGG - chr6_4:36277481-36277500 Msa0986920:intron 65.0%
GGGGCGGACCGCAATAAAGG+CGG + chr6_4:36277631-36277650 None:intergenic 65.0%
AACCGTTGCAGAGGGGGCCA+AGG + chr6_4:36278817-36278836 None:intergenic 65.0%
! GCCGTCGTTACCGGTTGCGG+TGG + chr6_4:36275331-36275350 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 36275082 36280543 36275082 ID=Msa0986920;Name=Msa0986920
chr6_4 mRNA 36275082 36280543 36275082 ID=Msa0986920-mRNA-1;Parent=Msa0986920;Name=Msa0986920-mRNA-1;_AED=0.00;_eAED=0.00;_QI=182|1|1|1|0|0.5|2|339|193
chr6_4 exon 36275082 36275633 36275082 ID=Msa0986920-mRNA-1:exon:9151;Parent=Msa0986920-mRNA-1
chr6_4 exon 36279993 36280543 36279993 ID=Msa0986920-mRNA-1:exon:9150;Parent=Msa0986920-mRNA-1
chr6_4 five_prime_UTR 36280362 36280543 36280362 ID=Msa0986920-mRNA-1:five_prime_utr;Parent=Msa0986920-mRNA-1
chr6_4 CDS 36279993 36280361 36279993 ID=Msa0986920-mRNA-1:cds;Parent=Msa0986920-mRNA-1
chr6_4 CDS 36275421 36275633 36275421 ID=Msa0986920-mRNA-1:cds;Parent=Msa0986920-mRNA-1
chr6_4 three_prime_UTR 36275082 36275420 36275082 ID=Msa0986920-mRNA-1:three_prime_utr;Parent=Msa0986920-mRNA-1
Gene Sequence

>Msa0986920

ATGGTTAACGAAAACGAAAACTCACCCTTACTCACATCCGAAATCGAAGAAGAAGAAGAAATCACCACCGCAACCGGTAACGACGGCGACACCGCAAAGCATGTCCGAACAAAGGTACCTGAAGTAGAGATCCATTTATTCCGGCAAGGAAAAGGACCGATTGTGGTGTTTAAATCAGCGTTGGGAGGTTGGGAACAGGATCAGCTTGAAGTTGGTGATATTCTTGAGAAACATGGATTGAAAACTGTGTTTGCGTTTAATCATCAGACACGTGTTCGTGGTGTTCCTGTTAGGTTTAATCCTAGGAATGGAAGGTCTGTTTTGACTTATAGGGATGGTGCTGTTGTTTATCTTGATGGAGAACCCAAGGACTCACTAATTAAACCGATTACCAGGATCTTGATTGGGGTAGCAGTAATAACCCTAATGATAGTAATAGTTTCGAGGGAAAGTCCAGAATGGATGAGCAAATTCAACTTTTCTCCTGGGAACTTCTCTCCATGGGTCTTGGCTTGCGTAGTTATTGTCTTCACCCGCATGAGAAAGAGAACAAAGGATTTTCTAACAAAGCGCGGTTGGTGA

Protein sequence

>Msa0986920

MVNENENSPLLTSEIEEEEEITTATGNDGDTAKHVRTKVPEVEIHLFRQGKGPIVVFKSALGGWEQDQLEVGDILEKHGLKTVFAFNHQTRVRGVPVRFNPRNGRSVLTYRDGAVVYLDGEPKDSLIKPITRILIGVAVITLMIVIVSRESPEWMSKFNFSPGNFSPWVLACVVIVFTRMRKRTKDFLTKRGW*