AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0642720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0642720 MtrunA17_Chr4g0027731 96.330 436 16 0 1 436 1 436 0.0 848
Msa0642720 MtrunA17_Chr2g0320571 66.889 450 132 4 1 436 1 447 0.0 567
Msa0642720 MtrunA17_Chr5g0447441 26.593 455 265 17 1 436 11 415 2.42e-31 125
Msa0642720 MtrunA17_Chr4g0044051 27.000 400 235 12 55 439 65 422 1.06e-30 123
Msa0642720 MtrunA17_Chr4g0028281 24.816 407 250 11 44 436 108 472 8.29e-29 118
Msa0642720 MtrunA17_Chr1g0171411 26.570 414 245 12 38 435 90 460 2.26e-27 114
Msa0642720 MtrunA17_Chr4g0028241 25.629 437 265 14 17 435 75 469 1.68e-26 112
Msa0642720 MtrunA17_Chr2g0327401 25.369 406 248 10 44 435 113 477 2.19e-26 111
Msa0642720 MtrunA17_Chr1g0199171 25.000 428 253 15 30 436 87 467 5.92e-25 107
Msa0642720 MtrunA17_Chr4g0028271 23.990 421 266 11 29 435 93 473 3.57e-24 105
Msa0642720 MtrunA17_Chr4g0028261 22.030 404 264 8 44 435 131 495 4.56e-24 104
Msa0642720 MtrunA17_Chr8g0385871 24.933 373 237 11 36 391 50 396 5.07e-22 98.2
Msa0642720 MtrunA17_Chr2g0281621 24.586 423 263 16 36 435 52 441 6.33e-22 98.2
Msa0642720 MtrunA17_Chr3g0118851 25.814 430 257 18 36 449 95 478 9.10e-22 97.8
Msa0642720 MtrunA17_Chr2g0327381 24.419 430 267 15 44 435 107 516 5.19e-21 95.9
Msa0642720 MtrunA17_Chr3g0131731 25.882 425 255 16 36 435 48 437 9.84e-21 94.4
Msa0642720 MtrunA17_Chr4g0047861 24.883 426 260 18 36 435 70 461 2.89e-20 93.2
Msa0642720 MtrunA17_Chr3g0118881 25.635 433 262 17 36 449 95 486 3.37e-20 93.2
Msa0642720 MtrunA17_Chr8g0338461 23.361 488 299 18 19 454 30 494 8.34e-20 92.0
Msa0642720 MtrunA17_Chr7g0249431 21.501 493 311 18 1 435 1 475 1.07e-19 91.7
Msa0642720 MtrunA17_Chr2g0327371 22.870 446 258 16 33 435 90 492 1.86e-19 90.9
Msa0642720 MtrunA17_Chr1g0153881 24.703 421 262 16 27 436 98 474 3.33e-19 90.1
Msa0642720 MtrunA17_Chr1g0165811 28.194 227 142 7 36 252 47 262 8.81e-19 86.3
Msa0642720 MtrunA17_Chr3g0094811 23.786 412 274 13 36 435 47 430 1.49e-18 87.8
Msa0642720 MtrunA17_Chr3g0118841 25.459 436 250 20 36 449 96 478 1.92e-18 87.8
Msa0642720 MtrunA17_Chr1g0153941 23.725 451 244 17 36 439 95 492 5.41e-18 86.3
Msa0642720 MtrunA17_Chr4g0038311 24.541 436 274 16 36 449 51 453 8.02e-18 85.5
Msa0642720 MtrunA17_Chr3g0118831 31.818 176 101 7 36 199 95 263 8.43e-18 85.5
Msa0642720 MtrunA17_Chr7g0234051 22.727 440 252 14 55 435 62 472 4.39e-17 83.6
Msa0642720 MtrunA17_Chr3g0118891 31.214 173 106 6 36 199 95 263 9.29e-17 82.4
Msa0642720 MtrunA17_Chr2g0304931 25.441 397 252 15 55 435 70 438 1.14e-16 82.0
Msa0642720 MtrunA17_Chr3g0118861 31.788 151 91 4 36 178 93 239 2.68e-16 80.9
Msa0642720 MtrunA17_Chr3g0126031 24.455 413 264 15 55 448 60 443 3.33e-16 80.9
Msa0642720 MtrunA17_Chr7g0221551 25.191 393 241 14 20 391 31 391 3.42e-16 80.5
Msa0642720 MtrunA17_Chr4g0068841 25.769 260 167 9 36 283 56 301 1.33e-15 79.0
Msa0642720 MtrunA17_Chr2g0309511 28.655 171 110 6 36 197 57 224 1.94e-15 78.6
Msa0642720 MtrunA17_Chr2g0281641 27.225 382 234 16 73 435 7 363 2.03e-15 77.8
Msa0642720 MtrunA17_Chr5g0431301 31.333 150 95 3 55 196 61 210 2.47e-15 78.2
Msa0642720 MtrunA17_Chr3g0090331 22.977 383 233 13 32 392 87 429 2.75e-15 78.2
Msa0642720 MtrunA17_Chr4g0020241 24.554 224 144 7 36 237 90 310 5.65e-15 77.0
Msa0642720 MtrunA17_Chr1g0199991 30.323 155 98 4 27 173 41 193 9.61e-15 76.3
Msa0642720 MtrunA17_Chr7g0219051 23.278 421 270 14 36 435 52 440 1.82e-14 75.5
Msa0642720 MtrunA17_Chr3g0126051 30.178 169 102 5 38 196 54 216 1.85e-14 75.5
Msa0642720 MtrunA17_Chr1g0153931 27.219 169 109 5 36 194 93 257 2.28e-14 73.2
Msa0642720 MtrunA17_Chr2g0309521 29.801 151 95 5 36 178 57 204 4.35e-14 74.3
Msa0642720 MtrunA17_Chr2g0309541 28.758 153 96 5 36 178 56 205 6.95e-14 73.6
Msa0642720 MtrunA17_Chr2g0318911 26.901 171 113 6 36 197 58 225 4.82e-13 70.9
Msa0642720 MtrunA17_Chr1g0199971 30.405 148 89 5 36 173 50 193 5.66e-13 70.5
Msa0642720 MtrunA17_Chr2g0285371 23.146 445 252 19 34 435 49 446 7.26e-12 67.4
Msa0642720 MtrunA17_Chr4g0068861 29.452 146 90 6 36 173 102 242 1.60e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0642720 AT2G27920.1 65.693 411 139 1 28 436 29 439 0.0 555
Msa0642720 AT2G27920.2 62.637 364 134 1 75 436 4 367 2.87e-159 456
Msa0642720 AT2G27920.3 59.692 325 129 1 114 436 48 372 3.07e-132 387
Msa0642720 AT1G15000.1 26.389 432 252 12 36 451 38 419 8.67e-33 129
Msa0642720 AT3G45010.1 25.472 424 257 12 29 435 97 478 4.57e-30 122
Msa0642720 AT5G22980.1 26.108 406 243 12 44 435 111 473 2.23e-28 117
Msa0642720 AT3G10410.1 25.234 428 251 15 30 436 96 475 2.07e-21 97.4
Msa0642720 AT4G15100.1 26.429 420 266 16 36 435 61 457 6.77e-20 92.4
Msa0642720 AT3G25420.1 23.210 461 292 18 19 435 29 471 2.39e-19 90.9
Msa0642720 AT1G11080.1 24.163 418 280 14 36 435 67 465 3.06e-19 90.5
Msa0642720 AT1G11080.2 24.163 418 280 14 36 435 67 465 3.13e-19 90.5
Msa0642720 AT4G12910.1 22.462 463 291 16 19 435 34 474 3.18e-19 90.5
Msa0642720 AT2G35780.1 24.286 420 259 15 36 435 47 427 4.44e-18 86.7
Msa0642720 AT1G43780.1 26.087 253 159 7 36 272 54 294 1.86e-17 85.1
Msa0642720 AT5G42240.1 27.200 250 146 8 36 264 49 283 3.88e-17 84.0
Msa0642720 AT4G12910.2 21.615 421 270 13 19 394 34 439 7.90e-17 83.2
Msa0642720 AT5G42230.1 32.667 150 93 3 55 196 60 209 1.75e-16 82.0
Msa0642720 AT5G42230.2 32.667 150 93 3 55 196 60 209 1.75e-16 82.0
Msa0642720 AT3G07990.1 32.418 182 106 7 28 197 43 219 1.78e-16 82.0
Msa0642720 AT5G23210.1 26.128 421 273 16 36 435 68 471 3.41e-16 81.3
Msa0642720 AT5G23210.3 28.270 237 152 8 36 260 68 298 3.59e-16 80.9
Msa0642720 AT2G33530.1 23.614 415 276 13 36 435 50 438 3.88e-16 80.9
Msa0642720 AT3G63470.1 23.227 409 272 15 36 435 98 473 4.26e-16 80.9
Msa0642720 AT1G28110.1 24.538 379 244 11 36 398 48 400 6.98e-16 80.1
Msa0642720 AT1G28110.2 24.538 379 244 11 36 398 48 400 6.98e-16 80.1
Msa0642720 AT3G17180.1 25.911 247 152 10 36 267 56 286 2.13e-15 78.6
Msa0642720 AT2G24010.1 34.014 147 83 5 36 173 47 188 2.17e-15 78.6
Msa0642720 AT3G17180.2 25.911 247 152 10 36 267 56 286 2.18e-15 78.6
Msa0642720 AT4G30810.1 24.814 403 259 18 46 435 67 438 2.20e-15 78.6
Msa0642720 AT5G08260.1 29.444 180 104 6 36 200 56 227 2.89e-15 78.2
Msa0642720 AT2G12480.1 31.333 150 95 3 55 196 63 212 4.69e-15 77.4
Msa0642720 AT2G12480.4 31.333 150 95 3 55 196 63 212 4.90e-15 77.4
Msa0642720 AT2G12480.2 31.333 150 95 3 55 196 63 212 5.06e-15 77.4
Msa0642720 AT2G12480.3 31.333 150 95 3 55 196 63 212 5.44e-15 77.4
Msa0642720 AT3G52020.1 25.118 422 251 20 36 435 96 474 1.30e-14 76.3
Msa0642720 AT1G61130.1 34.043 141 84 3 65 196 75 215 1.39e-14 76.3
Msa0642720 AT2G24000.1 33.333 147 85 5 36 173 47 189 1.42e-14 76.3
Msa0642720 AT3G02110.1 30.935 139 90 2 65 197 81 219 2.71e-14 75.1
Msa0642720 AT2G05850.1 23.641 423 257 17 36 435 81 460 5.75e-14 74.3
Msa0642720 AT2G35770.1 29.609 179 111 6 28 196 47 220 3.95e-13 71.6
Msa0642720 AT1G73290.2 29.655 145 85 4 34 166 47 186 1.25e-12 68.9
Msa0642720 AT4G30610.1 31.613 155 85 6 32 173 45 191 1.38e-12 70.1
Msa0642720 AT1G73280.1 22.385 478 263 18 10 441 13 428 2.24e-12 69.3
Msa0642720 AT1G73280.2 24.062 320 196 11 10 290 13 324 3.01e-12 68.6
Msa0642720 AT1G73290.3 29.655 145 85 4 34 166 47 186 3.88e-12 68.2
Msa0642720 AT1G73290.1 29.655 145 85 4 34 166 47 186 4.61e-12 68.2
Msa0642720 AT1G73300.1 30.345 145 84 4 34 166 48 187 4.61e-12 68.2
Msa0642720 AT1G73300.2 30.345 145 84 4 34 166 48 187 4.61e-12 68.2
Msa0642720 AT5G36180.1 29.814 161 95 5 19 166 32 187 4.82e-12 68.2
Msa0642720 AT5G22960.1 27.027 185 105 6 5 184 8 167 7.88e-12 64.7
Msa0642720 AT1G73270.1 31.034 145 83 4 34 166 48 187 1.83e-11 66.2
Msa0642720 AT5G09640.1 22.270 467 293 18 9 435 7 443 1.91e-11 66.2
Msa0642720 AT1G73270.2 28.977 176 107 5 34 196 48 218 1.95e-11 66.2
Msa0642720 AT1G73310.2 29.655 145 85 4 34 166 48 187 9.27e-11 63.9
Msa0642720 AT1G73310.1 29.655 145 85 4 34 166 48 187 9.78e-11 63.9

Find 121 sgRNAs with CRISPR-Local

Find 468 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACAATTCTATTGGATTCT+TGG 0.200204 4_3:+44721425 Msa0642720:CDS
CCCTGCAACCAGAGAATTAT+TGG 0.209686 4_3:-44718041 None:intergenic
CTTCTTACCTCATCAATTCT+TGG 0.221137 4_3:-44720575 None:intergenic
AGCCACCACCGGTGAGTTTC+CGG 0.231974 4_3:-44725316 None:intergenic
AAACTTGGCCCTTTACTAAA+TGG 0.253144 4_3:+44720352 Msa0642720:CDS
AATTCAACATGGTTGTTAAA+AGG 0.269721 4_3:+44718347 Msa0642720:CDS
GGCAAATTTGCTGTCACTCT+TGG 0.293076 4_3:+44718938 Msa0642720:CDS
GCCAATAATTCTCTGGTTGC+AGG 0.294647 4_3:+44718040 Msa0642720:CDS
CAAGAATCCAATAGAATTGT+AGG 0.295802 4_3:-44721424 None:intergenic
GTCATTGGATAGGGTGCTTC+AGG 0.303141 4_3:+44718266 Msa0642720:intron
TTGCAGAAGCACACATGTTT+TGG 0.324024 4_3:+44717970 Msa0642720:intron
TGGACTTACGTGACATTCTC+AGG 0.331318 4_3:-44720403 None:intergenic
AAGATAAGTGAAAACTTCAT+TGG 0.346770 4_3:-44720534 None:intergenic
TTACTTACCACAAAATCTTC+TGG 0.356577 4_3:-44719424 None:intergenic
TACATTGTGGCAGAGTCTTA+TGG 0.367175 4_3:+44718914 Msa0642720:CDS
CCCATTCTTCTGATCCATCT+TGG 0.371873 4_3:-44717822 None:intergenic
CAAAAGAATGAAAAGGGTAT+TGG 0.372196 4_3:-44717668 None:intergenic
TCTTATGTAGGTGTGGCATT+AGG 0.374191 4_3:+44719385 Msa0642720:intron
GGATAGGGTGCTTCAGGTGT+TGG 0.387749 4_3:+44718272 Msa0642720:intron
GATAGGGTGCTTCAGGTGTT+GGG 0.400100 4_3:+44718273 Msa0642720:intron
TTATGACACCATTTAGTAAA+GGG 0.401053 4_3:-44720360 None:intergenic
GAGAAGAAGACCCTGTCCTT+AGG 0.409718 4_3:-44720315 None:intergenic
GAAGAATCTTCCACTCTGTA+TGG 0.410067 4_3:-44718008 None:intergenic
GTTTATATATAGTAGAGAAT+TGG 0.416548 4_3:-44717646 None:intergenic
CCAAGATGGATCAGAAGAAT+GGG 0.416640 4_3:+44717822 Msa0642720:CDS
AACAACCATGTTGAATTCCT+TGG 0.417373 4_3:-44718341 None:intergenic
GAGAAGCAAAAGAATGAAAA+GGG 0.421945 4_3:-44717674 None:intergenic
AGAGAAGCAAAAGAATGAAA+AGG 0.421991 4_3:-44717675 None:intergenic
AACCCAAGCTTCAGTCCCTT+TGG 0.424615 4_3:-44720991 None:intergenic
GTCTCGAGACTCGATGATAA+TGG 0.429151 4_3:+44719669 Msa0642720:CDS
TACAATTTCTTGGTCGATGC+GGG 0.430582 4_3:+44720211 Msa0642720:CDS
TTCTTGGTCGATGCGGGAAG+TGG 0.440552 4_3:+44720217 Msa0642720:CDS
AAGAGAAGAACGATGGGAAA+AGG 0.442411 4_3:-44717754 None:intergenic
AAACTGTATCCTGTTCCAAC+TGG 0.449212 4_3:-44718779 None:intergenic
TTCTATTGGATTCTTGGAGC+TGG 0.449461 4_3:+44721431 Msa0642720:CDS
AGAAGAAGACCCTGTCCTTA+GGG 0.450693 4_3:-44720314 None:intergenic
GGTGCTTCAGGTGTTGGGAT+TGG 0.451236 4_3:+44718278 Msa0642720:CDS
AAAAGGAGATCTCTTGTTTG+TGG 0.452395 4_3:+44718364 Msa0642720:CDS
ATTATAGGTTGATCAGCTAC+TGG 0.456406 4_3:+44720697 Msa0642720:intron
ATCTGAATTTGCAGTTGTCA+TGG 0.459985 4_3:+44719628 Msa0642720:intron
TCTTTATTTCGTAGGTGGGA+AGG 0.460675 4_3:+44721314 Msa0642720:intron
AAGGGACTGAAGCTTGGGTT+AGG 0.462980 4_3:+44720994 Msa0642720:CDS
GGTTGATCAGCTACTGGCTA+AGG 0.466777 4_3:+44720703 Msa0642720:intron
ACCAAGATGGATCAGAAGAA+TGG 0.467901 4_3:+44717821 Msa0642720:CDS
TACCAAAGGGACTGAAGCTT+GGG 0.469620 4_3:+44720989 Msa0642720:CDS
CTACCAAAGGGACTGAAGCT+TGG 0.476951 4_3:+44720988 Msa0642720:CDS
TTTATGACACCATTTAGTAA+AGG 0.477365 4_3:-44720361 None:intergenic
CCTTAGGGAAGTAAGATACT+TGG 0.479071 4_3:-44720299 None:intergenic
AATTAATAAAAGAAAGATCA+AGG 0.483875 4_3:+44720266 Msa0642720:CDS
CAGGACAATCCAGTTGGAAC+AGG 0.483965 4_3:+44718770 Msa0642720:intron
TCTGAATTTGCAGTTGTCAT+GGG 0.484342 4_3:+44719629 Msa0642720:intron
CTTTATTTCGTAGGTGGGAA+GGG 0.484776 4_3:+44721315 Msa0642720:intron
AGGACAGGGTCTTCTTCTCC+TGG 0.484963 4_3:+44720319 Msa0642720:CDS
ATCTGATTTGTGCTACCAAA+GGG 0.489721 4_3:+44720976 Msa0642720:CDS
CCTGGTGGTGATGATAAACT+TGG 0.495610 4_3:+44720337 Msa0642720:CDS
GAGTTTCCGGTCATCTTCTC+CGG 0.495917 4_3:-44725303 None:intergenic
CGGCGATGTGTTTAGAATGA+AGG 0.499957 4_3:+44725342 Msa0642720:CDS
TATCTTACTTCCCTAAGGAC+AGG 0.502007 4_3:+44720304 Msa0642720:CDS
AGCCATGGCCAATAATTCTC+TGG 0.505294 4_3:+44718033 Msa0642720:CDS
TGAAAATTGACGCAATGATA+CGG 0.509825 4_3:-44717572 None:intergenic
AAGTTAGTGTGCGTGTGAGT+AGG 0.519864 4_3:-44717468 None:intergenic
AAATTGAAACTTACACTTGG+AGG 0.521572 4_3:+44718992 Msa0642720:CDS
TAAAAGAAAGATCAAGGAAG+AGG 0.522688 4_3:+44720272 Msa0642720:CDS
TTAATGATGCAACTGACTCA+TGG 0.525154 4_3:+44719864 Msa0642720:CDS
AACCAGAGAATTATTGGCCA+TGG 0.526681 4_3:-44718035 None:intergenic
TGGATACCAGCTTGAAGCCA+AGG 0.530260 4_3:+44718324 Msa0642720:CDS
TGAATTCCTTGGCTTCAAGC+TGG 0.530298 4_3:-44718330 None:intergenic
GACCGGAAACTCACCGGTGG+TGG 0.530496 4_3:+44725314 Msa0642720:CDS
TTTGTTACTTCCACAGTAGA+GGG 0.534331 4_3:-44721369 None:intergenic
ATCAAGAAGCAACTTGAAGA+TGG 0.537399 4_3:+44719836 Msa0642720:CDS
ACTCACCGGTGGTGGCTCTC+CGG 0.538601 4_3:+44725322 Msa0642720:CDS
CACAAGCCGGAGAAGATGAC+CGG 0.547830 4_3:+44725297 Msa0642720:CDS
ATTTGTTACTTCCACAGTAG+AGG 0.551192 4_3:-44721370 None:intergenic
GAAAGGAAGAGAAGAACGAT+GGG 0.561094 4_3:-44717760 None:intergenic
AAAGAGTCCTTTGTACATTG+TGG 0.565413 4_3:+44718901 Msa0642720:CDS
ATATCCTCTGTCCTTGACAC+TGG 0.567477 4_3:+44717525 Msa0642720:five_prime_UTR
TCCATTGTAGACAGTAACAT+TGG 0.569749 4_3:-44720729 None:intergenic
CCAATAATTCTCTGGTTGCA+GGG 0.571892 4_3:+44718041 Msa0642720:CDS
CCAAGTATCTTACTTCCCTA+AGG 0.573294 4_3:+44720299 Msa0642720:CDS
GAGACTCGATGATAATGGAC+TGG 0.576037 4_3:+44719674 Msa0642720:CDS
CTTCATTCTAAACACATCGC+CGG 0.576048 4_3:-44725341 None:intergenic
TATGAAGCCAAGAATTGATG+AGG 0.578416 4_3:+44720568 Msa0642720:CDS
AAGAAATTGAAACTTACACT+TGG 0.579577 4_3:+44718989 Msa0642720:CDS
TATTTGATTATAGATGGGGA+GGG 0.582452 4_3:+44720507 Msa0642720:intron
TGAAAGGAAGAGAAGAACGA+TGG 0.582873 4_3:-44717761 None:intergenic
CTGAATTTGCAGTTGTCATG+GGG 0.584944 4_3:+44719630 Msa0642720:intron
CAATAGAAGAAAACACAAGC+CGG 0.586867 4_3:+44725284 Msa0642720:intron
GTTGATCAGCTACTGGCTAA+GGG 0.587456 4_3:+44720704 Msa0642720:CDS
GATCTGATTTGTGCTACCAA+AGG 0.588055 4_3:+44720975 Msa0642720:CDS
CTCGAGACGTCTTTGAGTAG+AGG 0.591471 4_3:-44719654 None:intergenic
GGACTTACGTGACATTCTCA+GGG 0.591603 4_3:-44720402 None:intergenic
TGGAAGATTCTTCAAAGCCA+TGG 0.593562 4_3:+44718018 Msa0642720:CDS
GGCTTCAAGCTGGTATCCAA+AGG 0.594499 4_3:-44718320 None:intergenic
TTACAATTTCTTGGTCGATG+CGG 0.596051 4_3:+44720210 Msa0642720:CDS
GTGTGGCATTAGGAGACAGT+TGG 0.599447 4_3:+44719395 Msa0642720:CDS
ATTGACGCAATGATACGGAT+AGG 0.601072 4_3:-44717567 None:intergenic
GTATTTGATTATAGATGGGG+AGG 0.603981 4_3:+44720506 Msa0642720:intron
GAAGATGACCGGAAACTCAC+CGG 0.606124 4_3:+44725308 Msa0642720:CDS
TGGTTCAGACATATCTGCAA+TGG 0.609707 4_3:+44720237 Msa0642720:CDS
ATAACACAGGACAATCCAGT+TGG 0.618495 4_3:+44718764 Msa0642720:intron
GACTCTGCCACAATGTACAA+AGG 0.618531 4_3:-44718908 None:intergenic
GCCAATGTTACTGTCTACAA+TGG 0.619525 4_3:+44720728 Msa0642720:CDS
TATATACGCTGCCAGTGTCA+AGG 0.630669 4_3:-44717536 None:intergenic
ACAGGGTCTTCTTCTCCTGG+TGG 0.631577 4_3:+44720322 Msa0642720:CDS
ATCTTACTTCCCTAAGGACA+GGG 0.631973 4_3:+44720305 Msa0642720:CDS
CCAAGTTTATCATCACCACC+AGG 0.637624 4_3:-44720337 None:intergenic
AAATAATTTAATCAACAATG+TGG 0.638143 4_3:-44718858 None:intergenic
TTCAATAAGCAGCAACAATG+TGG 0.638580 4_3:+44719907 Msa0642720:CDS
GACAGAACACCCCTCTACTG+TGG 0.644169 4_3:+44721359 Msa0642720:CDS
CATCGCCGGAGAGCCACCAC+CGG 0.644465 4_3:-44725327 None:intergenic
GGAAGTAACAAATCGACCAA+AGG 0.653536 4_3:+44721380 Msa0642720:CDS
TTGTTACTTCCACAGTAGAG+GGG 0.653722 4_3:-44721368 None:intergenic
TGAAGCCAAGGAATTCAACA+TGG 0.659940 4_3:+44718336 Msa0642720:CDS
TGGAGATCAGTATTGCTCAG+AGG 0.661077 4_3:+44719813 Msa0642720:intron
GCTGCCAGTGTCAAGGACAG+AGG 0.675187 4_3:-44717529 None:intergenic
CAAGATGGATCAGAAGAATG+GGG 0.681105 4_3:+44717823 Msa0642720:CDS
CAACAATGTGGTCAAATCTG+TGG 0.683124 4_3:-44718846 None:intergenic
ATAATTCTCTGGTTGCAGGG+TGG 0.685909 4_3:+44718044 Msa0642720:CDS
TTATAAAAGTCCATACAGAG+TGG 0.699820 4_3:+44717998 Msa0642720:CDS
ATTGTGGCAGAGTCTTATGG+TGG 0.700649 4_3:+44718917 Msa0642720:CDS
GATGACCGGAAACTCACCGG+TGG 0.742672 4_3:+44725311 Msa0642720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATAGTAATATTTTCAT+CGG + chr4_3:44720666-44720685 Msa0642720:intron 10.0%
!!! TTATATATTTATAGTTGATA+TGG - chr4_3:44721571-44721590 None:intergenic 10.0%
!!! TATTTGAATTTTAGTTTTTA+AGG + chr4_3:44721643-44721662 Msa0642720:intron 10.0%
!! AAATAAAATAAGTTATTGAT+TGG + chr4_3:44723494-44723513 Msa0642720:intron 10.0%
!!! AATAAAATAAGTTATTGATT+GGG + chr4_3:44723495-44723514 Msa0642720:intron 10.0%
!! ATTTCACTTATATTTAAAAA+CGG - chr4_3:44723726-44723745 None:intergenic 10.0%
!!! ATAAGAAAAATTCATTTTTT+AGG - chr4_3:44723824-44723843 None:intergenic 10.0%
!!! ATTTTTCTTATATTTAGAAA+CGG + chr4_3:44723833-44723852 Msa0642720:intron 10.0%
!!! TTTTATTACTTTTTTAAATG+TGG + chr4_3:44724354-44724373 Msa0642720:intron 10.0%
!!! TTTATTACTTTTTTAAATGT+GGG + chr4_3:44724355-44724374 Msa0642720:intron 10.0%
!! ACTTATATGAATTAAATACA+AGG - chr4_3:44718472-44718491 None:intergenic 15.0%
!!! ATCAAATATTTTTAGTGATT+TGG - chr4_3:44718538-44718557 None:intergenic 15.0%
!! AAATAATTTAATCAACAATG+TGG - chr4_3:44718861-44718880 None:intergenic 15.0%
!!! ATAAATTTTGACTAATGAAT+GGG + chr4_3:44719250-44719269 Msa0642720:intron 15.0%
!!! AAAATCATACTTTTTCTTTA+AGG - chr4_3:44719354-44719373 None:intergenic 15.0%
!!! TTAAAGAAAAAGTATGATTT+TGG + chr4_3:44719353-44719372 Msa0642720:intron 15.0%
!!! TAAAGAAAAAGTATGATTTT+GGG + chr4_3:44719354-44719373 Msa0642720:intron 15.0%
!! ATTCAACAAAATAAACTTAT+TGG - chr4_3:44719463-44719482 None:intergenic 15.0%
!!! CTTAAATTTTTTGTTGAAAT+AGG + chr4_3:44720183-44720202 Msa0642720:intron 15.0%
!! AATTAATAAAAGAAAGATCA+AGG + chr4_3:44720266-44720285 Msa0642720:CDS 15.0%
!!! AAGAAGATTTTTTTAAACTA+TGG + chr4_3:44720592-44720611 Msa0642720:intron 15.0%
!!! ATTTTTATAACATTGGTTTT+GGG - chr4_3:44721079-44721098 None:intergenic 15.0%
!! AAAACCAATGTTATAAAAAT+CGG + chr4_3:44721079-44721098 Msa0642720:intron 15.0%
!! CTAGTTACTATTAATAAATT+TGG + chr4_3:44721706-44721725 Msa0642720:intron 15.0%
!! TATTAATAAATTTGGAAATG+TGG + chr4_3:44721714-44721733 Msa0642720:intron 15.0%
!!! TTTCCAAATTCTATATTTTA+CGG + chr4_3:44721837-44721856 Msa0642720:intron 15.0%
!!! AGATAAAATTCTCTTATTTT+TGG + chr4_3:44722004-44722023 Msa0642720:intron 15.0%
!!! ATAAGTGAAATTCATTTTTT+AGG + chr4_3:44723735-44723754 Msa0642720:intron 15.0%
!! TATTTATTTAATGATGTATG+TGG + chr4_3:44723760-44723779 Msa0642720:intron 15.0%
!! TTGAGAAAAATCTTTATTAA+GGG - chr4_3:44723999-44724018 None:intergenic 15.0%
!! TTTGAGAAAAATCTTTATTA+AGG - chr4_3:44724000-44724019 None:intergenic 15.0%
!! GTTTATATATAGTAGAGAAT+TGG - chr4_3:44717649-44717668 None:intergenic 20.0%
!!! TCTTTTTTTCCTTCAAAAAA+TGG + chr4_3:44717720-44717739 Msa0642720:exon 20.0%
!! CATTGATATCGATAATAATA+TGG + chr4_3:44718092-44718111 Msa0642720:intron 20.0%
!! TCATACATAAACACATAAAA+TGG - chr4_3:44718230-44718249 None:intergenic 20.0%
!! TAAAATAACTATGACGATTA+CGG - chr4_3:44718617-44718636 None:intergenic 20.0%
!! TGAAAGAGTAAAACTATTTA+TGG + chr4_3:44718667-44718686 Msa0642720:intron 20.0%
!!! ATTGGTCTTATTTCAATTTA+TGG + chr4_3:44719062-44719081 Msa0642720:intron 20.0%
!!! CATAAATTTTGACTAATGAA+TGG + chr4_3:44719249-44719268 Msa0642720:intron 20.0%
!! TAGACTTAATATATACATTG+CGG - chr4_3:44719987-44720006 None:intergenic 20.0%
!! ATATGATTACATTCAATTAC+TGG + chr4_3:44720074-44720093 Msa0642720:intron 20.0%
!!! ATAGGATTTTTACAATTTCT+TGG + chr4_3:44720201-44720220 Msa0642720:intron 20.0%
!!! TCATCGGAATTTTTTATTAT+AGG + chr4_3:44720682-44720701 Msa0642720:intron 20.0%
!! TTAGTTTCGATAATAATAAG+AGG + chr4_3:44720778-44720797 Msa0642720:intron 20.0%
!! AAAGTGTGTTTGATTATTAT+AGG + chr4_3:44720950-44720969 Msa0642720:intron 20.0%
!!! TTTTTATAACATTGGTTTTG+GGG - chr4_3:44721078-44721097 None:intergenic 20.0%
!!! GATTTTTATAACATTGGTTT+TGG - chr4_3:44721080-44721099 None:intergenic 20.0%
!!! ATTCTTATCTTCTTTTTTCA+CGG + chr4_3:44721612-44721631 Msa0642720:intron 20.0%
!! AAACCGTAAAATATAGAATT+TGG - chr4_3:44721843-44721862 None:intergenic 20.0%
!!! GTAGTACTATAATTTTAATG+TGG - chr4_3:44722057-44722076 None:intergenic 20.0%
!!! GTATTTTCTTCAAAATACTT+AGG + chr4_3:44722118-44722137 Msa0642720:intron 20.0%
!! TCTTTAGTAAGAAGAAAAAA+AGG + chr4_3:44722641-44722660 Msa0642720:intron 20.0%
!!! ATAAGCAAAAATCAACATTT+TGG - chr4_3:44722845-44722864 None:intergenic 20.0%
!!! TTTCATTTTGTTATGTCATA+AGG + chr4_3:44722905-44722924 Msa0642720:intron 20.0%
!! AGTAAATAATAATAAGGACA+AGG - chr4_3:44723259-44723278 None:intergenic 20.0%
!! TTATTATTATTTACTTCCTC+CGG + chr4_3:44723264-44723283 Msa0642720:intron 20.0%
!!! TAAGAAAAGATTCTCTTTTT+AGG - chr4_3:44723385-44723404 None:intergenic 20.0%
!! TTACTATTATTCAGAAAACA+GGG - chr4_3:44723476-44723495 None:intergenic 20.0%
!! TTTACTATTATTCAGAAAAC+AGG - chr4_3:44723477-44723496 None:intergenic 20.0%
!! CATTTATTTAATGATGTATG+TGG - chr4_3:44723799-44723818 None:intergenic 20.0%
!!! AAGATTTTTCTCAAAAATGA+TGG + chr4_3:44724005-44724024 Msa0642720:intron 20.0%
!! TATTTAAAGAGTCCTTATTA+GGG - chr4_3:44724099-44724118 None:intergenic 20.0%
!!! CATATTTAAGTATTTTTCAG+TGG - chr4_3:44724215-44724234 None:intergenic 20.0%
!! TTTAATGATGTAAAGATAGT+GGG - chr4_3:44724239-44724258 None:intergenic 20.0%
!! TAATAAAATGTGTACTACTT+TGG - chr4_3:44724301-44724320 None:intergenic 20.0%
!! AAGACAAACTAAAAAAGATT+TGG - chr4_3:44724745-44724764 None:intergenic 20.0%
!! TCAAGAAGATTAAACAATAT+AGG - chr4_3:44724935-44724954 None:intergenic 20.0%
!!! ATGATGAACTGTAATTTTAA+TGG + chr4_3:44725128-44725147 Msa0642720:intron 20.0%
!!! TGATGAACTGTAATTTTAAT+GGG + chr4_3:44725129-44725148 Msa0642720:intron 20.0%
!!! GAAGTTTTTCCATTTTTTGA+AGG - chr4_3:44717732-44717751 None:intergenic 25.0%
! GTAGAAGAAAAAATGATGAA+AGG - chr4_3:44717780-44717799 None:intergenic 25.0%
! ATAAACACAAAAGACTTACT+AGG - chr4_3:44717865-44717884 None:intergenic 25.0%
!! TAGTAAGTCTTTTGTGTTTA+TGG + chr4_3:44717864-44717883 Msa0642720:intron 25.0%
! AATTCAACATGGTTGTTAAA+AGG + chr4_3:44718347-44718366 Msa0642720:CDS 25.0%
!!! AAATCTTGTTTTTGACTATG+TGG + chr4_3:44718709-44718728 Msa0642720:intron 25.0%
! AAGAAATTGAAACTTACACT+TGG + chr4_3:44718989-44719008 Msa0642720:CDS 25.0%
! TAGTCAAAATTTATGAAGCA+CGG - chr4_3:44719244-44719263 None:intergenic 25.0%
!!! TAACTTGTTCTTTTTTGTGT+TGG + chr4_3:44719279-44719298 Msa0642720:intron 25.0%
! ACCTTTATATTGTGGTAAAA+TGG + chr4_3:44719524-44719543 Msa0642720:intron 25.0%
!! TCCATTTTACCACAATATAA+AGG - chr4_3:44719528-44719547 None:intergenic 25.0%
! AAATTTCTACTTGAGAAGAT+GGG - chr4_3:44719725-44719744 None:intergenic 25.0%
! AAAATTTCTACTTGAGAAGA+TGG - chr4_3:44719726-44719745 None:intergenic 25.0%
!! TTTATCTAACAAACCCATTT+TGG + chr4_3:44719793-44719812 Msa0642720:intron 25.0%
! ATAAAGGAGAACTCATTTAT+GGG - chr4_3:44719958-44719977 None:intergenic 25.0%
! TATAAAGGAGAACTCATTTA+TGG - chr4_3:44719959-44719978 None:intergenic 25.0%
! TACATTGCGGTATATTATAA+AGG - chr4_3:44719974-44719993 None:intergenic 25.0%
!! GCATTTTCTCAAATTATTAC+TGG + chr4_3:44720096-44720115 Msa0642720:intron 25.0%
! TATTACTGGTGTTTAAGTAT+CGG + chr4_3:44720110-44720129 Msa0642720:intron 25.0%
! TTATGACACCATTTAGTAAA+GGG - chr4_3:44720363-44720382 None:intergenic 25.0%
! TTTATGACACCATTTAGTAA+AGG - chr4_3:44720364-44720383 None:intergenic 25.0%
! ATCCATGGTTAAAGAATTAT+TGG - chr4_3:44720426-44720445 None:intergenic 25.0%
! ACTGTGTATTTGATTATAGA+TGG + chr4_3:44720501-44720520 Msa0642720:intron 25.0%
! CTGTGTATTTGATTATAGAT+GGG + chr4_3:44720502-44720521 Msa0642720:intron 25.0%
! TGTGTATTTGATTATAGATG+GGG + chr4_3:44720503-44720522 Msa0642720:intron 25.0%
! AAGATAAGTGAAAACTTCAT+TGG - chr4_3:44720537-44720556 None:intergenic 25.0%
!! TGATCCGATTTTTATAACAT+TGG - chr4_3:44721086-44721105 None:intergenic 25.0%
!! TAGAATGATACATTAGTTTC+TGG - chr4_3:44721124-44721143 None:intergenic 25.0%
! AGTTTGATTGCAGTTTAATT+GGG - chr4_3:44721200-44721219 None:intergenic 25.0%
! TAGTTTGATTGCAGTTTAAT+TGG - chr4_3:44721201-44721220 None:intergenic 25.0%
!! ATCTTCTTTCTTTATTTCGT+AGG + chr4_3:44721306-44721325 Msa0642720:intron 25.0%
! ACAAAAACCTACAATTCTAT+TGG + chr4_3:44721417-44721436 Msa0642720:CDS 25.0%
!!! ATAGTTGTTTTAGTGATGAT+TGG - chr4_3:44721475-44721494 None:intergenic 25.0%
! TGAAAATAATGCCAGAAAAA+AGG + chr4_3:44722473-44722492 Msa0642720:intron 25.0%
! GAAAATAATGCCAGAAAAAA+GGG + chr4_3:44722474-44722493 Msa0642720:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - chr4_3:44722854-44722873 None:intergenic 25.0%
! TAAGCAAAAAGCAATATTGT+AGG + chr4_3:44722755-44722774 Msa0642720:intron 25.0%
! CATTCATTTAATGATGTATG+TGG - chr4_3:44722819-44722838 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + chr4_3:44722854-44722873 Msa0642720:intron 25.0%
! ATCATTTGTAATGAAACACA+AGG - chr4_3:44722996-44723015 None:intergenic 25.0%
! GGAGGAAGTAAATAATAATA+AGG - chr4_3:44723265-44723284 None:intergenic 25.0%
!!! TCTTTTCTTATATTTGAGAC+CGG - chr4_3:44723395-44723414 None:intergenic 25.0%
! CATTGAATAGTTAATGTATC+TGG + chr4_3:44723321-44723340 Msa0642720:intron 25.0%
!!! TCTTTTCTTATATTTGAGAC+CGG + chr4_3:44723395-44723414 Msa0642720:intron 25.0%
!! GATGGAGTACTTTAATTTAT+GGG - chr4_3:44723704-44723723 None:intergenic 25.0%
! CACTTATATTTAAAAACGGA+TGG - chr4_3:44723722-44723741 None:intergenic 25.0%
! GATGTATGTGGTTTATAATA+TGG + chr4_3:44723772-44723791 Msa0642720:intron 25.0%
! TTTCTTATATTTAGAAACGG+AGG + chr4_3:44723836-44723855 Msa0642720:intron 25.0%
! TTCTTATATTTAGAAACGGA+GGG + chr4_3:44723837-44723856 Msa0642720:intron 25.0%
!! ATTTTTCTCAAAAATGATGG+TGG + chr4_3:44724008-44724027 Msa0642720:intron 25.0%
!! TTTTTCTCAAAAATGATGGT+GGG + chr4_3:44724009-44724028 Msa0642720:intron 25.0%
! CTATTTAAAGAGTCCTTATT+AGG - chr4_3:44724100-44724119 None:intergenic 25.0%
! GTTTAATGATGTAAAGATAG+TGG - chr4_3:44724240-44724259 None:intergenic 25.0%
!! TTATTACTCCTTTTTACAAG+TGG + chr4_3:44724273-44724292 Msa0642720:intron 25.0%
!! TATTACTCCTTTTTACAAGT+GGG + chr4_3:44724274-44724293 Msa0642720:intron 25.0%
!! TTATTACTCTTTTATGCAAG+TGG + chr4_3:44724315-44724334 Msa0642720:intron 25.0%
!! TATTACTCTTTTATGCAAGT+GGG + chr4_3:44724316-44724335 Msa0642720:intron 25.0%
! GTAATAAAATGTGTACTACT+TGG - chr4_3:44724302-44724321 None:intergenic 25.0%
!! TTCAAGACATAGTTTCTTTT+TGG + chr4_3:44724606-44724625 Msa0642720:intron 25.0%
!! TCAAGACATAGTTTCTTTTT+GGG + chr4_3:44724607-44724626 Msa0642720:intron 25.0%
! TGTTTACCATTAGATTAAAG+TGG + chr4_3:44724690-44724709 Msa0642720:intron 25.0%
!!! TTCTAAAGCTTTTAAGAAAC+TGG - chr4_3:44724889-44724908 None:intergenic 25.0%
!!! GTTCATCATTTTTACTTCTA+TGG - chr4_3:44725117-44725136 None:intergenic 25.0%
TGAAAATTGACGCAATGATA+CGG - chr4_3:44717575-44717594 None:intergenic 30.0%
! CAAAAGAATGAAAAGGGTAT+TGG - chr4_3:44717671-44717690 None:intergenic 30.0%
GAGAAGCAAAAGAATGAAAA+GGG - chr4_3:44717677-44717696 None:intergenic 30.0%
AGAGAAGCAAAAGAATGAAA+AGG - chr4_3:44717678-44717697 None:intergenic 30.0%
TTATAAAAGTCCATACAGAG+TGG + chr4_3:44717998-44718017 Msa0642720:CDS 30.0%
TCGATAATAATATGGTGTGT+TGG + chr4_3:44718100-44718119 Msa0642720:intron 30.0%
! GAATGAGATTTTCATGTCAT+TGG + chr4_3:44718251-44718270 Msa0642720:intron 30.0%
! AGATTTTCATGTCATTGGAT+AGG + chr4_3:44718256-44718275 Msa0642720:intron 30.0%
! GATTTTCATGTCATTGGATA+GGG + chr4_3:44718257-44718276 Msa0642720:intron 30.0%
!! ATTGGAAATTTTGAAGAGGT+TGG + chr4_3:44718296-44718315 Msa0642720:CDS 30.0%
!!! AAAAGCACTTTTCATGATGA+TGG - chr4_3:44718413-44718432 None:intergenic 30.0%
CATATAAGTTGTGAGTGTAA+AGG + chr4_3:44718483-44718502 Msa0642720:intron 30.0%
TTGATGTCATATGATAACAC+AGG + chr4_3:44718751-44718770 Msa0642720:intron 30.0%
AAATTGAAACTTACACTTGG+AGG + chr4_3:44718992-44719011 Msa0642720:CDS 30.0%
! TGTAATCATAAGTGTTGTGT+CGG + chr4_3:44719176-44719195 Msa0642720:intron 30.0%
!!! TGTTCTTTTTTGTGTTGGTT+AGG + chr4_3:44719284-44719303 Msa0642720:intron 30.0%
!! TGGGAAACTTTTTCTTATGT+AGG + chr4_3:44719373-44719392 Msa0642720:intron 30.0%
!! AACTTTTTCTTATGTAGGTG+TGG + chr4_3:44719378-44719397 Msa0642720:intron 30.0%
TTACTTACCACAAAATCTTC+TGG - chr4_3:44719427-44719446 None:intergenic 30.0%
ATTTCTGTGTTGTGTTGTAT+CGG - chr4_3:44720056-44720075 None:intergenic 30.0%
TAAAAGAAAGATCAAGGAAG+AGG + chr4_3:44720272-44720291 Msa0642720:CDS 30.0%
GTCCAATAATTCTTTAACCA+TGG + chr4_3:44720421-44720440 Msa0642720:intron 30.0%
! TGAACAAAACTTTTCATCCA+TGG - chr4_3:44720441-44720460 None:intergenic 30.0%
GTAGTTAAGCAATCATTTCA+AGG - chr4_3:44720483-44720502 None:intergenic 30.0%
TATTTGATTATAGATGGGGA+GGG + chr4_3:44720507-44720526 Msa0642720:intron 30.0%
! GAAGTTTTCACTTATCTTGA+AGG + chr4_3:44720539-44720558 Msa0642720:CDS 30.0%
! TACTATTTGACATGTTGACT+TGG + chr4_3:44720814-44720833 Msa0642720:intron 30.0%
CCAATGTTATATTGTCTATC+CGG - chr4_3:44721262-44721281 None:intergenic 30.0%
! TTCTTTCTTTATTTCGTAGG+TGG + chr4_3:44721309-44721328 Msa0642720:intron 30.0%
! TCTTTCTTTATTTCGTAGGT+GGG + chr4_3:44721310-44721329 Msa0642720:intron 30.0%
GTATGACTTGAAAAATCCTT+TGG - chr4_3:44721399-44721418 None:intergenic 30.0%
CAAGAATCCAATAGAATTGT+AGG - chr4_3:44721427-44721446 None:intergenic 30.0%
CTACAATTCTATTGGATTCT+TGG + chr4_3:44721425-44721444 Msa0642720:CDS 30.0%
AAAATTCTATGTGAGCAAGA+AGG + chr4_3:44721880-44721899 Msa0642720:intron 30.0%
AAATTCTATGTGAGCAAGAA+GGG + chr4_3:44721881-44721900 Msa0642720:intron 30.0%
! ACATTGAGTTTTTGTGACAT+TGG + chr4_3:44722143-44722162 Msa0642720:intron 30.0%
!!! CTTTCTTTATCCCTTTTTTC+TGG - chr4_3:44722487-44722506 None:intergenic 30.0%
GAGGAAACATTATGGATTTA+TGG + chr4_3:44722598-44722617 Msa0642720:intron 30.0%
AACATTATGGATTTATGGTC+AGG + chr4_3:44722603-44722622 Msa0642720:intron 30.0%
TTACTAAAGAGACAGTAACT+AGG - chr4_3:44722631-44722650 None:intergenic 30.0%
ACTGAAGTTATGCATAGAAA+AGG + chr4_3:44723050-44723069 Msa0642720:intron 30.0%
CAACAATGAATTCTCTTTCA+TGG - chr4_3:44723107-44723126 None:intergenic 30.0%
! ATTTTATATACTACTCCCTC+CGG - chr4_3:44723417-44723436 None:intergenic 30.0%
!! TGGACTTTTTCTTCTGAATT+TGG + chr4_3:44723436-44723455 Msa0642720:intron 30.0%
! GGATGGAGTACTTTAATTTA+TGG - chr4_3:44723705-44723724 None:intergenic 30.0%
!!! GGCTAGTGTATTGTTTTTTA+TGG + chr4_3:44723866-44723885 Msa0642720:intron 30.0%
AATCTTTATTAAGGGCCAAA+AGG - chr4_3:44723991-44724010 None:intergenic 30.0%
CCTTATTAGTGTATTGTCAT+TGG - chr4_3:44724189-44724208 None:intergenic 30.0%
CCAATGACAATACACTAATA+AGG + chr4_3:44724186-44724205 Msa0642720:intron 30.0%
!!! ATTTTTTCTTCCTCCAATGA+AGG + chr4_3:44724441-44724460 Msa0642720:intron 30.0%
!!! TTTTTTCTTCCTCCAATGAA+GGG + chr4_3:44724442-44724461 Msa0642720:intron 30.0%
! AAAAGTAGCAACTTTTGCAT+TGG + chr4_3:44724541-44724560 Msa0642720:intron 30.0%
! CTTTTGCATTGGAAATTGTA+TGG + chr4_3:44724552-44724571 Msa0642720:intron 30.0%
GTTATGACTTTAACATGTGT+TGG + chr4_3:44724574-44724593 Msa0642720:intron 30.0%
!! GTTTCTTTTTGGGAAATGTT+AGG + chr4_3:44724617-44724636 Msa0642720:intron 30.0%
ATTGCTCCACTTTAATCTAA+TGG - chr4_3:44724699-44724718 None:intergenic 30.0%
TGTACAACTATAACAACCTT+CGG + chr4_3:44724833-44724852 Msa0642720:intron 30.0%
AACTCATTACTTTCATGTTG+AGG - chr4_3:44724861-44724880 None:intergenic 30.0%
!! AAAGCTTTTAAGAAACTGGA+CGG - chr4_3:44724885-44724904 None:intergenic 30.0%
ACAGCTTTCAAAAACCAAGA+TGG + chr4_3:44717808-44717827 Msa0642720:CDS 35.0%
CCAATCAAGTAGTACTTACA+GGG - chr4_3:44718070-44718089 None:intergenic 35.0%
ACCAATCAAGTAGTACTTAC+AGG - chr4_3:44718071-44718090 None:intergenic 35.0%
!! TGGGATTGGAAATTTTGAAG+AGG + chr4_3:44718292-44718311 Msa0642720:CDS 35.0%
AACAACCATGTTGAATTCCT+TGG - chr4_3:44718344-44718363 None:intergenic 35.0%
! AAAAGGAGATCTCTTGTTTG+TGG + chr4_3:44718364-44718383 Msa0642720:CDS 35.0%
! GATCTCTTGTTTGTGGTAAT+TGG + chr4_3:44718371-44718390 Msa0642720:intron 35.0%
AAAGAGTCCTTTGTACATTG+TGG + chr4_3:44718901-44718920 Msa0642720:CDS 35.0%
! TGAGATCTGAAATCTGAAGA+TGG - chr4_3:44719041-44719060 None:intergenic 35.0%
TCAGATTTCAGATCTCAGAT+TGG + chr4_3:44719044-44719063 Msa0642720:intron 35.0%
!! TTGTGTTGGTTAGGAAATGA+TGG + chr4_3:44719293-44719312 Msa0642720:intron 35.0%
CTGTAATTGTAGTTGCAATG+CGG + chr4_3:44719559-44719578 Msa0642720:intron 35.0%
ATCTGAATTTGCAGTTGTCA+TGG + chr4_3:44719628-44719647 Msa0642720:intron 35.0%
TCTGAATTTGCAGTTGTCAT+GGG + chr4_3:44719629-44719648 Msa0642720:intron 35.0%
!! ATGGACTGGAAAAATCAAAC+AGG + chr4_3:44719688-44719707 Msa0642720:CDS 35.0%
GCAATACTGATCTCCAAAAT+GGG - chr4_3:44719809-44719828 None:intergenic 35.0%
AGCAATACTGATCTCCAAAA+TGG - chr4_3:44719810-44719829 None:intergenic 35.0%
ATCAAGAAGCAACTTGAAGA+TGG + chr4_3:44719836-44719855 Msa0642720:CDS 35.0%
! TTAATGATGCAACTGACTCA+TGG + chr4_3:44719864-44719883 Msa0642720:CDS 35.0%
TTCAATAAGCAGCAACAATG+TGG + chr4_3:44719907-44719926 Msa0642720:CDS 35.0%
! TACACTTTGATCTAAAGTGC+TGG - chr4_3:44720025-44720044 None:intergenic 35.0%
ACTTTAGATCAAAGTGTACC+TGG + chr4_3:44720027-44720046 Msa0642720:intron 35.0%
TTACAATTTCTTGGTCGATG+CGG + chr4_3:44720210-44720229 Msa0642720:CDS 35.0%
AAACTTGGCCCTTTACTAAA+TGG + chr4_3:44720352-44720371 Msa0642720:CDS 35.0%
GTATTTGATTATAGATGGGG+AGG + chr4_3:44720506-44720525 Msa0642720:intron 35.0%
TATGAAGCCAAGAATTGATG+AGG + chr4_3:44720568-44720587 Msa0642720:CDS 35.0%
CTTCTTACCTCATCAATTCT+TGG - chr4_3:44720578-44720597 None:intergenic 35.0%
!! ATTATAGGTTGATCAGCTAC+TGG + chr4_3:44720697-44720716 Msa0642720:intron 35.0%
TCCATTGTAGACAGTAACAT+TGG - chr4_3:44720732-44720751 None:intergenic 35.0%
! ATCTGATTTGTGCTACCAAA+GGG + chr4_3:44720976-44720995 Msa0642720:CDS 35.0%
CCGGATAGACAATATAACAT+TGG + chr4_3:44721259-44721278 Msa0642720:intron 35.0%
GAAGGGCTAAAAAGTTTCTT+GGG + chr4_3:44721332-44721351 Msa0642720:CDS 35.0%
AAGGGCTAAAAAGTTTCTTG+GGG + chr4_3:44721333-44721352 Msa0642720:CDS 35.0%
! TTTGTTACTTCCACAGTAGA+GGG - chr4_3:44721372-44721391 None:intergenic 35.0%
! ATTTGTTACTTCCACAGTAG+AGG - chr4_3:44721373-44721392 None:intergenic 35.0%
TGGAAATGTGGAAGATCTTT+AGG + chr4_3:44721726-44721745 Msa0642720:intron 35.0%
GGAAATGTGGAAGATCTTTA+GGG + chr4_3:44721727-44721746 Msa0642720:intron 35.0%
GAAATGTGGAAGATCTTTAG+GGG + chr4_3:44721728-44721747 Msa0642720:intron 35.0%
AAATGTGGAAGATCTTTAGG+GGG + chr4_3:44721729-44721748 Msa0642720:intron 35.0%
! CTTTTACCAGCTCATTCATA+TGG + chr4_3:44721799-44721818 Msa0642720:intron 35.0%
ATGTGTCTGTATCTCTTCAA+AGG - chr4_3:44722308-44722327 None:intergenic 35.0%
! TTTCTTATTGAAGGCGTGTT+CGG - chr4_3:44722390-44722409 None:intergenic 35.0%
! AGCTTTTACACTATGTTGTC+CGG - chr4_3:44722416-44722435 None:intergenic 35.0%
TACCACCATTCAGATCTAAA+TGG + chr4_3:44722543-44722562 Msa0642720:intron 35.0%
ACCACCATTCAGATCTAAAT+GGG + chr4_3:44722544-44722563 Msa0642720:intron 35.0%
GTATCCCATTTAGATCTGAA+TGG - chr4_3:44722551-44722570 None:intergenic 35.0%
TACCTTGTGAGGAAACATTA+TGG + chr4_3:44722590-44722609 Msa0642720:intron 35.0%
ATCCATAATGTTTCCTCACA+AGG - chr4_3:44722595-44722614 None:intergenic 35.0%
! GAAACACAAGGTTGATCATT+GGG - chr4_3:44722984-44723003 None:intergenic 35.0%
! TGAAACACAAGGTTGATCAT+TGG - chr4_3:44722985-44723004 None:intergenic 35.0%
AGGATCAGAAAAAGAATTGC+AGG + chr4_3:44723194-44723213 Msa0642720:intron 35.0%
GGATCAGAAAAAGAATTGCA+GGG + chr4_3:44723195-44723214 Msa0642720:intron 35.0%
! TTTCTTATATTTGAGACCGG+AGG - chr4_3:44723398-44723417 None:intergenic 35.0%
! TTTCTTATATTTGAGACCGG+AGG + chr4_3:44723398-44723417 Msa0642720:intron 35.0%
! TTCTTATATTTGAGACCGGA+GGG + chr4_3:44723399-44723418 Msa0642720:intron 35.0%
GGAGGGAGTAGTATATAAAA+TGG + chr4_3:44723416-44723435 Msa0642720:intron 35.0%
TTTAGAAACGGAGGGATTAT+CGG + chr4_3:44723845-44723864 Msa0642720:intron 35.0%
!!! GAGAAGACATACTTTTTCAG+AGG + chr4_3:44723922-44723941 Msa0642720:intron 35.0%
!!! AAGACATACTTTTTCAGAGG+TGG + chr4_3:44723925-44723944 Msa0642720:intron 35.0%
TTATTAGGGAACTACCATTG+TGG - chr4_3:44724085-44724104 None:intergenic 35.0%
ACAATGGTAGTTCCCTAATA+AGG + chr4_3:44724084-44724103 Msa0642720:intron 35.0%
AAGGAACGGACAACTATATA+AGG - chr4_3:44724410-44724429 None:intergenic 35.0%
TATAGTTGTCCGTTCCTTAA+CGG + chr4_3:44724412-44724431 Msa0642720:intron 35.0%
!! TCTTTTTGGGAAATGTTAGG+TGG + chr4_3:44724620-44724639 Msa0642720:intron 35.0%
ACAAACAACTTTCCCATAGT+GGG - chr4_3:44724673-44724692 None:intergenic 35.0%
AACAAACAACTTTCCCATAG+TGG - chr4_3:44724674-44724693 None:intergenic 35.0%
! GTGGAGCAATGATTTTATCA+TGG + chr4_3:44724709-44724728 Msa0642720:intron 35.0%
TTAGAGTCATAGTTATGTGC+TGG + chr4_3:44724972-44724991 Msa0642720:intron 35.0%
CAATAGAAGAAAACACAAGC+CGG + chr4_3:44725284-44725303 Msa0642720:intron 35.0%
ATTGACGCAATGATACGGAT+AGG - chr4_3:44717570-44717589 None:intergenic 40.0%
AAGAGAAGAACGATGGGAAA+AGG - chr4_3:44717757-44717776 None:intergenic 40.0%
GAAAGGAAGAGAAGAACGAT+GGG - chr4_3:44717763-44717782 None:intergenic 40.0%
TGAAAGGAAGAGAAGAACGA+TGG - chr4_3:44717764-44717783 None:intergenic 40.0%
ACCAAGATGGATCAGAAGAA+TGG + chr4_3:44717821-44717840 Msa0642720:CDS 40.0%
CCAAGATGGATCAGAAGAAT+GGG + chr4_3:44717822-44717841 Msa0642720:CDS 40.0%
CAAGATGGATCAGAAGAATG+GGG + chr4_3:44717823-44717842 Msa0642720:CDS 40.0%
!! TTGCAGAAGCACACATGTTT+TGG + chr4_3:44717970-44717989 Msa0642720:intron 40.0%
GAAGAATCTTCCACTCTGTA+TGG - chr4_3:44718011-44718030 None:intergenic 40.0%
TGGAAGATTCTTCAAAGCCA+TGG + chr4_3:44718018-44718037 Msa0642720:CDS 40.0%
AACCAGAGAATTATTGGCCA+TGG - chr4_3:44718038-44718057 None:intergenic 40.0%
CCAATAATTCTCTGGTTGCA+GGG + chr4_3:44718041-44718060 Msa0642720:CDS 40.0%
CCCTGTAAGTACTACTTGAT+TGG + chr4_3:44718067-44718086 Msa0642720:intron 40.0%
! ACATCTAATCAGAAGCGTGT+CGG + chr4_3:44718156-44718175 Msa0642720:intron 40.0%
! GGGGCTTCATTGATTAAATC+TGG + chr4_3:44718178-44718197 Msa0642720:intron 40.0%
!! TTTTGAAGAGGTTGGACCTT+TGG + chr4_3:44718304-44718323 Msa0642720:CDS 40.0%
TGAAGCCAAGGAATTCAACA+TGG + chr4_3:44718336-44718355 Msa0642720:CDS 40.0%
ACTATGACGATTACGGTGAA+CGG - chr4_3:44718610-44718629 None:intergenic 40.0%
ATAACACAGGACAATCCAGT+TGG + chr4_3:44718764-44718783 Msa0642720:intron 40.0%
AAACTGTATCCTGTTCCAAC+TGG - chr4_3:44718782-44718801 None:intergenic 40.0%
! TGGAACAGGATACAGTTTTG+TGG + chr4_3:44718784-44718803 Msa0642720:CDS 40.0%
!! AACAGGATACAGTTTTGTGG+AGG + chr4_3:44718787-44718806 Msa0642720:CDS 40.0%
CAACAATGTGGTCAAATCTG+TGG - chr4_3:44718849-44718868 None:intergenic 40.0%
TACATTGTGGCAGAGTCTTA+TGG + chr4_3:44718914-44718933 Msa0642720:CDS 40.0%
GCTCAAATTATTATCCGCGT+CGG - chr4_3:44719140-44719159 None:intergenic 40.0%
TCTTATGTAGGTGTGGCATT+AGG + chr4_3:44719385-44719404 Msa0642720:intron 40.0%
! GATCTCACCAGAAGATTTTG+TGG + chr4_3:44719417-44719436 Msa0642720:CDS 40.0%
CGCTGCAAACCTTTATATTG+TGG + chr4_3:44719516-44719535 Msa0642720:intron 40.0%
CTGAATTTGCAGTTGTCATG+GGG + chr4_3:44719630-44719649 Msa0642720:intron 40.0%
!! TTTGATCTAAAGTGCTGGTG+CGG - chr4_3:44720020-44720039 None:intergenic 40.0%
TACAATTTCTTGGTCGATGC+GGG + chr4_3:44720211-44720230 Msa0642720:CDS 40.0%
TGGTTCAGACATATCTGCAA+TGG + chr4_3:44720237-44720256 Msa0642720:CDS 40.0%
CCTTAGGGAAGTAAGATACT+TGG - chr4_3:44720302-44720321 None:intergenic 40.0%
CCAAGTATCTTACTTCCCTA+AGG + chr4_3:44720299-44720318 Msa0642720:CDS 40.0%
TATCTTACTTCCCTAAGGAC+AGG + chr4_3:44720304-44720323 Msa0642720:CDS 40.0%
ATCTTACTTCCCTAAGGACA+GGG + chr4_3:44720305-44720324 Msa0642720:CDS 40.0%
GCCAATGTTACTGTCTACAA+TGG + chr4_3:44720728-44720747 Msa0642720:CDS 40.0%
! GATCTGATTTGTGCTACCAA+AGG + chr4_3:44720975-44720994 Msa0642720:CDS 40.0%
AAAAATCGGATCAGACCAGT+CGG + chr4_3:44721093-44721112 Msa0642720:intron 40.0%
! TCTTTATTTCGTAGGTGGGA+AGG + chr4_3:44721314-44721333 Msa0642720:intron 40.0%
! CTTTATTTCGTAGGTGGGAA+GGG + chr4_3:44721315-44721334 Msa0642720:intron 40.0%
GGAAGGGCTAAAAAGTTTCT+TGG + chr4_3:44721331-44721350 Msa0642720:CDS 40.0%
! TTGTTACTTCCACAGTAGAG+GGG - chr4_3:44721371-44721390 None:intergenic 40.0%
GGAAGTAACAAATCGACCAA+AGG + chr4_3:44721380-44721399 Msa0642720:CDS 40.0%
TTCTATTGGATTCTTGGAGC+TGG + chr4_3:44721431-44721450 Msa0642720:CDS 40.0%
! AATGTGGAAGATCTTTAGGG+GGG + chr4_3:44721730-44721749 Msa0642720:intron 40.0%
ACCTTCATTTGCGCTTAATG+AGG + chr4_3:44721757-44721776 Msa0642720:intron 40.0%
TCCTCATTAAGCGCAAATGA+AGG - chr4_3:44721761-44721780 None:intergenic 40.0%
CGCTTAATGAGGATCATCTT+AGG + chr4_3:44721768-44721787 Msa0642720:intron 40.0%
TGATAGCCATATGAATGAGC+TGG - chr4_3:44721808-44721827 None:intergenic 40.0%
GTAGTGTTTACCGTTGAGTT+TGG + chr4_3:44722083-44722102 Msa0642720:intron 40.0%
CAAAGGCAAGGGTTGTATTT+GGG - chr4_3:44722291-44722310 None:intergenic 40.0%
TCAAAGGCAAGGGTTGTATT+TGG - chr4_3:44722292-44722311 None:intergenic 40.0%
CTGTATCTCTTCAAAGGCAA+GGG - chr4_3:44722302-44722321 None:intergenic 40.0%
TCTGTATCTCTTCAAAGGCA+AGG - chr4_3:44722303-44722322 None:intergenic 40.0%
CGCCTTCAATAAGAAATGTC+CGG + chr4_3:44722394-44722413 Msa0642720:intron 40.0%
GTCCGGACATTTCTTATTGA+AGG - chr4_3:44722399-44722418 None:intergenic 40.0%
TCCCATTTAGATCTGAATGG+TGG - chr4_3:44722548-44722567 None:intergenic 40.0%
TTCCTCACAAGGTAAACACA+CGG - chr4_3:44722584-44722603 None:intergenic 40.0%
ACAAGATGATGTACACCTTC+CGG + chr4_3:44722723-44722742 Msa0642720:intron 40.0%
TGCTTATAATAGTGACCGGA+AGG - chr4_3:44722858-44722877 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+TGG + chr4_3:44722858-44722877 Msa0642720:intron 40.0%
CAGAAGAAAGATACACCATC+CGG - chr4_3:44722876-44722895 None:intergenic 40.0%
! ATTTGTTTGCTTGCTGCTGT+AGG + chr4_3:44722956-44722975 Msa0642720:intron 40.0%
ACTTCAGTAGTTCATGTAGC+TGG - chr4_3:44723038-44723057 None:intergenic 40.0%
CAACAAGCAAACACTGCAAA+AGG + chr4_3:44723174-44723193 Msa0642720:intron 40.0%
TGTCTTCTCGTGAATGTCAT+TGG - chr4_3:44723911-44723930 None:intergenic 40.0%
!!! CTTTTTCAGAGGTGGATTGT+TGG + chr4_3:44723933-44723952 Msa0642720:intron 40.0%
! TCCCACGTAATAATGCCTTT+TGG + chr4_3:44723973-44723992 Msa0642720:intron 40.0%
!! GCCAAAAGGCATTATTACGT+GGG - chr4_3:44723977-44723996 None:intergenic 40.0%
!! TTCTCAAAAATGATGGTGGG+TGG + chr4_3:44724012-44724031 Msa0642720:intron 40.0%
CTTTGGTCCCACTTGTAAAA+AGG - chr4_3:44724284-44724303 None:intergenic 40.0%
TCTCTTTCCTAGGCAACTAA+CGG - chr4_3:44724383-44724402 None:intergenic 40.0%
TTAGTTGCCTAGGAAAGAGA+GGG + chr4_3:44724383-44724402 Msa0642720:intron 40.0%
ATAGTTGTCCGTTCCTTAAC+GGG + chr4_3:44724413-44724432 Msa0642720:intron 40.0%
GAAAAAATGAGTCCCCGTTA+AGG - chr4_3:44724429-44724448 None:intergenic 40.0%
GGAAATGTTAGGTGGCATTT+AGG + chr4_3:44724628-44724647 Msa0642720:intron 40.0%
AATGTTAGGTGGCATTTAGG+TGG + chr4_3:44724631-44724650 Msa0642720:intron 40.0%
ATGTTAGGTGGCATTTAGGT+GGG + chr4_3:44724632-44724651 Msa0642720:intron 40.0%
CAAACAACTTTCCCATAGTG+GGG - chr4_3:44724672-44724691 None:intergenic 40.0%
!! AAAATCTGGGTTGGTAATGG+TGG - chr4_3:44724793-44724812 None:intergenic 40.0%
!! TGGAAAATCTGGGTTGGTAA+TGG - chr4_3:44724796-44724815 None:intergenic 40.0%
GAGATGAATCGAATCTCTGA+CGG - chr4_3:44725014-44725033 None:intergenic 40.0%
ACGCATTTAGCTGAATCGAT+TGG + chr4_3:44725200-44725219 Msa0642720:intron 40.0%
AAGTTAGTGTGCGTGTGAGT+AGG - chr4_3:44717471-44717490 None:intergenic 45.0%
ATATCCTCTGTCCTTGACAC+TGG + chr4_3:44717525-44717544 Msa0642720:five_prime_UTR 45.0%
TATATACGCTGCCAGTGTCA+AGG - chr4_3:44717539-44717558 None:intergenic 45.0%
CCCATTCTTCTGATCCATCT+TGG - chr4_3:44717825-44717844 None:intergenic 45.0%
!! CAGAAGCACACATGTTTTGG+TGG + chr4_3:44717973-44717992 Msa0642720:intron 45.0%
AGCCATGGCCAATAATTCTC+TGG + chr4_3:44718033-44718052 Msa0642720:CDS 45.0%
GCCAATAATTCTCTGGTTGC+AGG + chr4_3:44718040-44718059 Msa0642720:CDS 45.0%
CCCTGCAACCAGAGAATTAT+TGG - chr4_3:44718044-44718063 None:intergenic 45.0%
ATAATTCTCTGGTTGCAGGG+TGG + chr4_3:44718044-44718063 Msa0642720:CDS 45.0%
GATTAGATGTGTCCTGGTGT+CGG - chr4_3:44718146-44718165 None:intergenic 45.0%
GCTTCTGATTAGATGTGTCC+TGG - chr4_3:44718152-44718171 None:intergenic 45.0%
! CATCTAATCAGAAGCGTGTC+GGG + chr4_3:44718157-44718176 Msa0642720:intron 45.0%
! ATCTAATCAGAAGCGTGTCG+GGG + chr4_3:44718158-44718177 Msa0642720:intron 45.0%
TGAATTCCTTGGCTTCAAGC+TGG - chr4_3:44718333-44718352 None:intergenic 45.0%
GACTCTGCCACAATGTACAA+AGG - chr4_3:44718911-44718930 None:intergenic 45.0%
! ATTGTGGCAGAGTCTTATGG+TGG + chr4_3:44718917-44718936 Msa0642720:CDS 45.0%
!! GGCAAATTTGCTGTCACTCT+TGG + chr4_3:44718938-44718957 Msa0642720:CDS 45.0%
! TATTGAAAGCGCACAGACAC+CGG + chr4_3:44719086-44719105 Msa0642720:intron 45.0%
GTCTCGAGACTCGATGATAA+TGG + chr4_3:44719669-44719688 Msa0642720:CDS 45.0%
!! GAGACTCGATGATAATGGAC+TGG + chr4_3:44719674-44719693 Msa0642720:CDS 45.0%
TGGAGATCAGTATTGCTCAG+AGG + chr4_3:44719813-44719832 Msa0642720:intron 45.0%
AGAAGAAGACCCTGTCCTTA+GGG - chr4_3:44720317-44720336 None:intergenic 45.0%
CCAAGTTTATCATCACCACC+AGG - chr4_3:44720340-44720359 None:intergenic 45.0%
! CCTGGTGGTGATGATAAACT+TGG + chr4_3:44720337-44720356 Msa0642720:CDS 45.0%
GGACTTACGTGACATTCTCA+GGG - chr4_3:44720405-44720424 None:intergenic 45.0%
TGGACTTACGTGACATTCTC+AGG - chr4_3:44720406-44720425 None:intergenic 45.0%
CGCATCAGAGACACTAGTTA+AGG + chr4_3:44720639-44720658 Msa0642720:intron 45.0%
! GTTGATCAGCTACTGGCTAA+GGG + chr4_3:44720704-44720723 Msa0642720:CDS 45.0%
TACCAAAGGGACTGAAGCTT+GGG + chr4_3:44720989-44721008 Msa0642720:CDS 45.0%
!! TAGTTTCTGGTTGAACCGAC+TGG - chr4_3:44721111-44721130 None:intergenic 45.0%
!! TACCGATTCGATCTTCGATC+CGG + chr4_3:44721240-44721259 Msa0642720:intron 45.0%
ATCCGGATCGAAGATCGAAT+CGG - chr4_3:44721245-44721264 None:intergenic 45.0%
TCTATGTGAGCAAGAAGGGT+CGG + chr4_3:44721885-44721904 Msa0642720:intron 45.0%
ATTGCTCACGCCAAACTCAA+CGG - chr4_3:44722096-44722115 None:intergenic 45.0%
!! GGCCAAAAGGCATTATTACG+TGG - chr4_3:44723978-44723997 None:intergenic 45.0%
!! TGTCCTAAGAGCATCCACAA+TGG + chr4_3:44724068-44724087 Msa0642720:intron 45.0%
CTACCATTGTGGATGCTCTT+AGG - chr4_3:44724074-44724093 None:intergenic 45.0%
GTTAGTTGCCTAGGAAAGAG+AGG + chr4_3:44724382-44724401 Msa0642720:intron 45.0%
ATAAGGACCCTCTCTTTCCT+AGG - chr4_3:44724393-44724412 None:intergenic 45.0%
TAGTTGTCCGTTCCTTAACG+GGG + chr4_3:44724414-44724433 Msa0642720:intron 45.0%
AATGAGTCCCCGTTAAGGAA+CGG - chr4_3:44724424-44724443 None:intergenic 45.0%
CTCCAATGAAGGGTCCTTAA+CGG + chr4_3:44724452-44724471 Msa0642720:intron 45.0%
TCCAATGAAGGGTCCTTAAC+GGG + chr4_3:44724453-44724472 Msa0642720:intron 45.0%
GGAGTGGTCCTTGTTAAGTA+AGG + chr4_3:44724475-44724494 Msa0642720:intron 45.0%
TTAAGTAAGGACCCCCTCAT+TGG + chr4_3:44724488-44724507 Msa0642720:intron 45.0%
! TTAGAGCATCTCCAATGAGG+GGG - chr4_3:44724502-44724521 None:intergenic 45.0%
! CTTAGAGCATCTCCAATGAG+GGG - chr4_3:44724503-44724522 None:intergenic 45.0%
! CCTTAGAGCATCTCCAATGA+GGG - chr4_3:44724504-44724523 None:intergenic 45.0%
CCTCATTGGAGATGCTCTAA+GGG + chr4_3:44724502-44724521 Msa0642720:intron 45.0%
AGGGAAAGAATTCCCCACTA+TGG + chr4_3:44724657-44724676 Msa0642720:intron 45.0%
GGGAAAGAATTCCCCACTAT+GGG + chr4_3:44724658-44724677 Msa0642720:intron 45.0%
!! GTTGTCGTTGGAGGTTGATA+AGG - chr4_3:44724771-44724790 None:intergenic 45.0%
!! TTGGTAATGGTGGTTGTCGT+TGG - chr4_3:44724783-44724802 None:intergenic 45.0%
CAGCAATGGAAAATCTGGGT+TGG - chr4_3:44724802-44724821 None:intergenic 45.0%
CCGACAGCAATGGAAAATCT+GGG - chr4_3:44724806-44724825 None:intergenic 45.0%
! CCCAGATTTTCCATTGCTGT+CGG + chr4_3:44724803-44724822 Msa0642720:intron 45.0%
TCCGACAGCAATGGAAAATC+TGG - chr4_3:44724807-44724826 None:intergenic 45.0%
!! AAAAATAGTTTAATATAAAA+GGG - chr4_3:44719320-44719339 None:intergenic 5.0%
!! TAAAAATAGTTTAATATAAA+AGG - chr4_3:44719321-44719340 None:intergenic 5.0%
!! AAAAAAATTTAAATCTTTAA+GGG - chr4_3:44723539-44723558 None:intergenic 5.0%
!! AAAAAAAATTTAAATCTTTA+AGG - chr4_3:44723540-44723559 None:intergenic 5.0%
!! TTTAATAAAATTACTTATTA+AGG + chr4_3:44724152-44724171 Msa0642720:intron 5.0%
! TCCTGGTGTCGGATACACAT+CGG - chr4_3:44718135-44718154 None:intergenic 50.0%
! TCTAATCAGAAGCGTGTCGG+GGG + chr4_3:44718159-44718178 Msa0642720:intron 50.0%
! GTCATTGGATAGGGTGCTTC+AGG + chr4_3:44718266-44718285 Msa0642720:intron 50.0%
! GATAGGGTGCTTCAGGTGTT+GGG + chr4_3:44718273-44718292 Msa0642720:intron 50.0%
GGCTTCAAGCTGGTATCCAA+AGG - chr4_3:44718323-44718342 None:intergenic 50.0%
TGGATACCAGCTTGAAGCCA+AGG + chr4_3:44718324-44718343 Msa0642720:CDS 50.0%
CAGGACAATCCAGTTGGAAC+AGG + chr4_3:44718770-44718789 Msa0642720:intron 50.0%
! TCCTTGGATTAGGTGTGTCC+CGG - chr4_3:44719217-44719236 None:intergenic 50.0%
TATGAAGCACGGACACTCCT+TGG - chr4_3:44719233-44719252 None:intergenic 50.0%
GTGTGGCATTAGGAGACAGT+TGG + chr4_3:44719395-44719414 Msa0642720:CDS 50.0%
GTTGCAATGCGGTTTGTCGA+CGG + chr4_3:44719570-44719589 Msa0642720:intron 50.0%
CTCGAGACGTCTTTGAGTAG+AGG - chr4_3:44719657-44719676 None:intergenic 50.0%
GAGAAGAAGACCCTGTCCTT+AGG - chr4_3:44720318-44720337 None:intergenic 50.0%
! GGTTGATCAGCTACTGGCTA+AGG + chr4_3:44720703-44720722 Msa0642720:intron 50.0%
CTACCAAAGGGACTGAAGCT+TGG + chr4_3:44720988-44721007 Msa0642720:CDS 50.0%
AACCCAAGCTTCAGTCCCTT+TGG - chr4_3:44720994-44721013 None:intergenic 50.0%
AAGGGACTGAAGCTTGGGTT+AGG + chr4_3:44720994-44721013 Msa0642720:CDS 50.0%
AGAAGGGTCGGTCTAACACA+AGG + chr4_3:44721897-44721916 Msa0642720:intron 50.0%
GAAGGGTCGGTCTAACACAA+GGG + chr4_3:44721898-44721917 Msa0642720:intron 50.0%
AAGGGTCGGTCTAACACAAG+GGG + chr4_3:44721899-44721918 Msa0642720:intron 50.0%
CAAGGTAAACACACGGTCAC+TGG - chr4_3:44722577-44722596 None:intergenic 50.0%
GACCGTGTGTTTACCTTGTG+AGG + chr4_3:44722579-44722598 Msa0642720:intron 50.0%
CGTTAAGGACCCTTCATTGG+AGG - chr4_3:44724454-44724473 None:intergenic 50.0%
CCAATGAAGGGTCCTTAACG+GGG + chr4_3:44724454-44724473 Msa0642720:intron 50.0%
GAGGGGGTCCTTACTTAACA+AGG - chr4_3:44724486-44724505 None:intergenic 50.0%
CCCTCATTGGAGATGCTCTA+AGG + chr4_3:44724501-44724520 Msa0642720:intron 50.0%
! CCCTTAGAGCATCTCCAATG+AGG - chr4_3:44724505-44724524 None:intergenic 50.0%
GTAATGGTGGTTGTCGTTGG+AGG - chr4_3:44724780-44724799 None:intergenic 50.0%
ACAGACGTTTCCGACAGCAA+TGG - chr4_3:44724816-44724835 None:intergenic 50.0%
!! CTTTCATGTTGAGGCACCGA+AGG - chr4_3:44724852-44724871 None:intergenic 50.0%
GAGTTTCCGGTCATCTTCTC+CGG - chr4_3:44725306-44725325 None:intergenic 50.0%
GAAGATGACCGGAAACTCAC+CGG + chr4_3:44725308-44725327 Msa0642720:CDS 50.0%
ACCGATGTGTATCCGACACC+AGG + chr4_3:44718131-44718150 Msa0642720:intron 55.0%
! GGATAGGGTGCTTCAGGTGT+TGG + chr4_3:44718272-44718291 Msa0642720:intron 55.0%
!! GGTGCTTCAGGTGTTGGGAT+TGG + chr4_3:44718278-44718297 Msa0642720:CDS 55.0%
GATTAGGTGTGTCCCGGTGT+CGG - chr4_3:44719211-44719230 None:intergenic 55.0%
ACCGGGACACACCTAATCCA+AGG + chr4_3:44719213-44719232 Msa0642720:intron 55.0%
GCACGGACACTCCTTGGATT+AGG - chr4_3:44719227-44719246 None:intergenic 55.0%
GTTGTGTTGTATCGGACGCC+AGG - chr4_3:44720048-44720067 None:intergenic 55.0%
TTCTTGGTCGATGCGGGAAG+TGG + chr4_3:44720217-44720236 Msa0642720:CDS 55.0%
AGGACAGGGTCTTCTTCTCC+TGG + chr4_3:44720319-44720338 Msa0642720:CDS 55.0%
ACAGGGTCTTCTTCTCCTGG+TGG + chr4_3:44720322-44720341 Msa0642720:CDS 55.0%
GACAGAACACCCCTCTACTG+TGG + chr4_3:44721359-44721378 Msa0642720:CDS 55.0%
! ATTGAAGGCGTGTTCGGCGT+CGG - chr4_3:44722384-44722403 None:intergenic 55.0%
GTGGGATCCGTTAGTTGCCT+AGG + chr4_3:44724373-44724392 Msa0642720:intron 55.0%
CCCCGTTAAGGACCCTTCAT+TGG - chr4_3:44724457-44724476 None:intergenic 55.0%
ACAAGGACCACTCCCCGTTA+AGG - chr4_3:44724469-44724488 None:intergenic 55.0%
AGGTGGCATTTAGGTGGGTG+AGG + chr4_3:44724637-44724656 Msa0642720:intron 55.0%
GGTGGCATTTAGGTGGGTGA+GGG + chr4_3:44724638-44724657 Msa0642720:intron 55.0%
CACAAGCCGGAGAAGATGAC+CGG + chr4_3:44725297-44725316 Msa0642720:CDS 55.0%
GCTGCCAGTGTCAAGGACAG+AGG - chr4_3:44717532-44717551 None:intergenic 60.0%
CACAGACACCGGACACGACA+CGG + chr4_3:44719097-44719116 Msa0642720:intron 60.0%
GTCAGTGTCCGTGTCGTGTC+CGG - chr4_3:44719108-44719127 None:intergenic 60.0%
CTGACACTAACACGCCGACG+CGG + chr4_3:44719123-44719142 Msa0642720:intron 60.0%
TCGGTACACGTGTCCGACAC+CGG + chr4_3:44719195-44719214 Msa0642720:intron 60.0%
GAAGGGTCCTTAACGGGGAG+TGG + chr4_3:44724459-44724478 Msa0642720:intron 60.0%
GATGACCGGAAACTCACCGG+TGG + chr4_3:44725311-44725330 Msa0642720:CDS 60.0%
AGCCACCACCGGTGAGTTTC+CGG - chr4_3:44725319-44725338 None:intergenic 60.0%
CGGTACACGTGTCCGACACC+GGG + chr4_3:44719196-44719215 Msa0642720:intron 65.0%
GACCGGAAACTCACCGGTGG+TGG + chr4_3:44725314-44725333 Msa0642720:CDS 65.0%
! ACTCACCGGTGGTGGCTCTC+CGG + chr4_3:44725322-44725341 Msa0642720:CDS 65.0%
CATCGCCGGAGAGCCACCAC+CGG - chr4_3:44725330-44725349 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 44717462 44725361 44717462 ID=Msa0642720;Name=Msa0642720
chr4_3 mRNA 44717462 44725361 44717462 ID=Msa0642720-mRNA-1;Parent=Msa0642720;Name=Msa0642720-mRNA-1;_AED=0.19;_eAED=0.19;_QI=277|0.91|0.92|0.92|1|1|13|0|459
chr4_3 exon 44717462 44717865 44717462 ID=Msa0642720-mRNA-1:exon:10224;Parent=Msa0642720-mRNA-1
chr4_3 exon 44717976 44718070 44717976 ID=Msa0642720-mRNA-1:exon:10225;Parent=Msa0642720-mRNA-1
chr4_3 exon 44718278 44718385 44718278 ID=Msa0642720-mRNA-1:exon:10226;Parent=Msa0642720-mRNA-1
chr4_3 exon 44718773 44719013 44718773 ID=Msa0642720-mRNA-1:exon:10227;Parent=Msa0642720-mRNA-1
chr4_3 exon 44719395 44719438 44719395 ID=Msa0642720-mRNA-1:exon:10228;Parent=Msa0642720-mRNA-1
chr4_3 exon 44719642 44719709 44719642 ID=Msa0642720-mRNA-1:exon:10229;Parent=Msa0642720-mRNA-1
chr4_3 exon 44719823 44719928 44719823 ID=Msa0642720-mRNA-1:exon:10230;Parent=Msa0642720-mRNA-1
chr4_3 exon 44720205 44720416 44720205 ID=Msa0642720-mRNA-1:exon:10231;Parent=Msa0642720-mRNA-1
chr4_3 exon 44720520 44720589 44720520 ID=Msa0642720-mRNA-1:exon:10232;Parent=Msa0642720-mRNA-1
chr4_3 exon 44720704 44720754 44720704 ID=Msa0642720-mRNA-1:exon:10233;Parent=Msa0642720-mRNA-1
chr4_3 exon 44720972 44721024 44720972 ID=Msa0642720-mRNA-1:exon:10234;Parent=Msa0642720-mRNA-1
chr4_3 exon 44721328 44721460 44721328 ID=Msa0642720-mRNA-1:exon:10235;Parent=Msa0642720-mRNA-1
chr4_3 exon 44725290 44725361 44725290 ID=Msa0642720-mRNA-1:exon:10236;Parent=Msa0642720-mRNA-1
chr4_3 five_prime_UTR 44717462 44717738 44717462 ID=Msa0642720-mRNA-1:five_prime_utr;Parent=Msa0642720-mRNA-1
chr4_3 CDS 44717739 44717865 44717739 ID=Msa0642720-mRNA-1:cds;Parent=Msa0642720-mRNA-1
chr4_3 CDS 44717976 44718070 44717976 ID=Msa0642720-mRNA-1:cds;Parent=Msa0642720-mRNA-1
chr4_3 CDS 44718278 44718385 44718278 ID=Msa0642720-mRNA-1:cds;Parent=Msa0642720-mRNA-1
chr4_3 CDS 44718773 44719013 44718773 ID=Msa0642720-mRNA-1:cds;Parent=Msa0642720-mRNA-1
chr4_3 CDS 44719395 44719438 44719395 ID=Msa0642720-mRNA-1:cds;Parent=Msa0642720-mRNA-1
chr4_3 CDS 44719642 44719709 44719642 ID=Msa0642720-mRNA-1:cds;Parent=Msa0642720-mRNA-1
chr4_3 CDS 44719823 44719928 44719823 ID=Msa0642720-mRNA-1:cds;Parent=Msa0642720-mRNA-1
chr4_3 CDS 44720205 44720416 44720205 ID=Msa0642720-mRNA-1:cds;Parent=Msa0642720-mRNA-1
chr4_3 CDS 44720520 44720589 44720520 ID=Msa0642720-mRNA-1:cds;Parent=Msa0642720-mRNA-1
chr4_3 CDS 44720704 44720754 44720704 ID=Msa0642720-mRNA-1:cds;Parent=Msa0642720-mRNA-1
chr4_3 CDS 44720972 44721024 44720972 ID=Msa0642720-mRNA-1:cds;Parent=Msa0642720-mRNA-1
chr4_3 CDS 44721328 44721460 44721328 ID=Msa0642720-mRNA-1:cds;Parent=Msa0642720-mRNA-1
chr4_3 CDS 44725290 44725361 44725290 ID=Msa0642720-mRNA-1:cds;Parent=Msa0642720-mRNA-1
Gene Sequence

>Msa0642720

ATGGAAAAACTTCTTCCTTTTCCCATCGTTCTTCTCTTCCTTTCATCATTTTTTCTTCTACAAAACGTTACAGCTTTCAAAAACCAAGATGGATCAGAAGAATGGGGTTATGTTCAAGTCAGACCTAAAGCACACATGTTTTGGTGGCATTATAAAAGTCCATACAGAGTGGAAGATTCTTCAAAGCCATGGCCAATAATTCTCTGGTTGCAGGGTGGCCCTGGTGCTTCAGGTGTTGGGATTGGAAATTTTGAAGAGGTTGGACCTTTGGATACCAGCTTGAAGCCAAGGAATTCAACATGGTTGTTAAAAGGAGATCTCTTGTTTGTGGACAATCCAGTTGGAACAGGATACAGTTTTGTGGAGGATGAGAAACTTTTTGTGAAAACAGATGATGAAGCAGCCACAGATTTGACCACATTGTTGATTAAATTATTTAATAATGATGAAAAACTTCAAAAGAGTCCTTTGTACATTGTGGCAGAGTCTTATGGTGGCAAATTTGCTGTCACTCTTGGATTATCTGCTCTTAAAGCTATTGAAGACAAGAAATTGAAACTTACACTTGGAGGTGTGGCATTAGGAGACAGTTGGATCTCACCAGAAGATTTTGTGTTGTCATGGGGTCCTCTACTCAAAGACGTCTCGAGACTCGATGATAATGGACTGGAAAAATCAAACAGTATTGCTCAGAGGATCAAGAAGCAACTTGAAGATGGTAAATTTAATGATGCAACTGACTCATGGAGTGAACTTGAGAATCAAATTTCAATAAGCAGCAACAATGTGGATTTTTACAATTTCTTGGTCGATGCGGGAAGTGGTTCAGACATATCTGCAATGGCAGTAGAATTAATAAAAGAAAGATCAAGGAAGAGGTACTCCAAGTATCTTACTTCCCTAAGGACAGGGTCTTCTTCTCCTGGTGGTGATGATAAACTTGGCCCTTTACTAAATGGTGTCATAAAGAAGAAGTTAAAAATCATCCCTGAGAATGTCACATGGGGAGGGCAGTCCAATGAAGTTTTCACTTATCTTGAAGGTGATTTTATGAAGCCAAGAATTGATGAGGTTGATCAGCTACTGGCTAAGGGAGCCAATGTTACTGTCTACAATGGACAAGTTGATCTGATTTGTGCTACCAAAGGGACTGAAGCTTGGGTTAGGAAACTCAAGTGGGAAGGGCTAAAAAGTTTCTTGGGGAAAGACAGAACACCCCTCTACTGTGGAAGTAACAAATCGACCAAAGGATTTTTCAAGTCATACAAAAACCTACAATTCTATTGGATTCTTGGAGCTGGTCATTTTAAGAAAACACAAGCCGGAGAAGATGACCGGAAACTCACCGGTGGTGGCTCTCCGGCGATGTGTTTAGAATGA
Protein sequence

>Msa0642720

MEKLLPFPIVLLFLSSFFLLQNVTAFKNQDGSEEWGYVQVRPKAHMFWWHYKSPYRVEDSSKPWPIILWLQGGPGASGVGIGNFEEVGPLDTSLKPRNSTWLLKGDLLFVDNPVGTGYSFVEDEKLFVKTDDEAATDLTTLLIKLFNNDEKLQKSPLYIVAESYGGKFAVTLGLSALKAIEDKKLKLTLGGVALGDSWISPEDFVLSWGPLLKDVSRLDDNGLEKSNSIAQRIKKQLEDGKFNDATDSWSELENQISISSNNVDFYNFLVDAGSGSDISAMAVELIKERSRKRYSKYLTSLRTGSSSPGGDDKLGPLLNGVIKKKLKIIPENVTWGGQSNEVFTYLEGDFMKPRIDEVDQLLAKGANVTVYNGQVDLICATKGTEAWVRKLKWEGLKSFLGKDRTPLYCGSNKSTKGFFKSYKNLQFYWILGAGHFKKTQAGEDDRKLTGGGSPAMCLE*