AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0546300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0546300 MtrunA17_Chr4g0027731 96.101 436 17 0 1 436 1 436 0.0 846
Msa0546300 MtrunA17_Chr2g0320571 66.000 450 136 4 1 436 1 447 0.0 562
Msa0546300 MtrunA17_Chr5g0447441 26.813 455 264 17 1 436 11 415 9.54e-32 126
Msa0546300 MtrunA17_Chr4g0044051 27.250 400 234 12 55 439 65 422 1.42e-31 125
Msa0546300 MtrunA17_Chr4g0028281 25.061 407 249 11 44 436 108 472 9.57e-29 118
Msa0546300 MtrunA17_Chr1g0171411 26.570 414 245 12 38 435 90 460 6.38e-28 115
Msa0546300 MtrunA17_Chr2g0327401 26.108 406 245 12 44 435 113 477 1.02e-26 112
Msa0546300 MtrunA17_Chr4g0028241 25.688 436 266 13 17 435 75 469 1.35e-26 112
Msa0546300 MtrunA17_Chr4g0028271 24.703 421 263 11 29 435 93 473 1.06e-25 109
Msa0546300 MtrunA17_Chr4g0028261 22.772 404 261 8 44 435 131 495 1.31e-25 109
Msa0546300 MtrunA17_Chr1g0199171 25.000 428 253 15 30 436 87 467 2.85e-25 108
Msa0546300 MtrunA17_Chr8g0385871 25.469 373 235 11 36 391 50 396 1.13e-22 100
Msa0546300 MtrunA17_Chr3g0118851 26.279 430 255 18 36 449 95 478 1.80e-22 100
Msa0546300 MtrunA17_Chr2g0281621 24.823 423 262 16 36 435 52 441 1.92e-22 99.8
Msa0546300 MtrunA17_Chr3g0131731 25.641 429 251 13 36 435 48 437 4.43e-22 98.6
Msa0546300 MtrunA17_Chr4g0047861 25.352 426 258 18 36 435 70 461 1.70e-21 97.1
Msa0546300 MtrunA17_Chr3g0118881 25.404 433 263 16 36 449 95 486 3.11e-21 96.3
Msa0546300 MtrunA17_Chr7g0249431 21.169 496 309 17 1 435 1 475 1.55e-20 94.0
Msa0546300 MtrunA17_Chr2g0327381 24.009 429 270 14 44 435 107 516 4.33e-20 93.2
Msa0546300 MtrunA17_Chr8g0338461 24.335 489 293 20 19 454 30 494 4.33e-20 92.8
Msa0546300 MtrunA17_Chr1g0153881 25.178 421 260 16 27 436 98 474 7.87e-20 92.0
Msa0546300 MtrunA17_Chr3g0118841 25.843 445 237 20 36 449 96 478 2.39e-19 90.5
Msa0546300 MtrunA17_Chr1g0165811 28.634 227 141 7 36 252 47 262 2.87e-19 87.4
Msa0546300 MtrunA17_Chr2g0327371 21.973 446 262 15 33 435 90 492 7.90e-19 89.0
Msa0546300 MtrunA17_Chr3g0094811 23.786 412 274 13 36 435 47 430 8.73e-19 88.6
Msa0546300 MtrunA17_Chr1g0153941 23.947 451 243 17 36 439 95 492 1.90e-18 87.8
Msa0546300 MtrunA17_Chr3g0118831 32.386 176 100 7 36 199 95 263 2.55e-18 87.0
Msa0546300 MtrunA17_Chr7g0234051 22.727 440 252 14 55 435 62 472 1.36e-17 85.1
Msa0546300 MtrunA17_Chr4g0038311 24.312 436 275 16 36 449 51 453 2.67e-17 84.0
Msa0546300 MtrunA17_Chr3g0118891 31.792 173 105 6 36 199 95 263 3.26e-17 84.0
Msa0546300 MtrunA17_Chr3g0118861 32.450 151 90 4 36 178 93 239 8.78e-17 82.4
Msa0546300 MtrunA17_Chr3g0126031 24.029 412 267 15 55 448 60 443 1.22e-16 82.0
Msa0546300 MtrunA17_Chr2g0304931 25.693 397 251 15 55 435 70 438 1.55e-16 81.6
Msa0546300 MtrunA17_Chr3g0090331 23.499 383 231 13 32 392 87 429 3.81e-16 80.5
Msa0546300 MtrunA17_Chr4g0068841 24.941 421 272 19 36 435 56 453 4.11e-16 80.5
Msa0546300 MtrunA17_Chr7g0221551 24.093 386 254 12 20 391 31 391 5.93e-16 79.7
Msa0546300 MtrunA17_Chr2g0309511 29.240 171 109 6 36 197 57 224 7.49e-16 79.7
Msa0546300 MtrunA17_Chr5g0431301 30.857 175 105 5 32 196 42 210 8.49e-16 79.3
Msa0546300 MtrunA17_Chr2g0281641 27.487 382 233 16 73 435 7 363 1.16e-15 78.6
Msa0546300 MtrunA17_Chr4g0020241 25.000 224 143 7 36 237 90 310 1.99e-15 78.6
Msa0546300 MtrunA17_Chr1g0199991 30.968 155 97 4 27 173 41 193 3.03e-15 77.8
Msa0546300 MtrunA17_Chr3g0126051 30.769 169 101 5 38 196 54 216 5.54e-15 77.0
Msa0546300 MtrunA17_Chr1g0153931 27.811 169 108 5 36 194 93 257 8.07e-15 74.7
Msa0546300 MtrunA17_Chr2g0309521 30.464 151 94 5 36 178 57 204 1.44e-14 75.9
Msa0546300 MtrunA17_Chr2g0309541 29.412 153 95 5 36 178 56 205 2.32e-14 75.1
Msa0546300 MtrunA17_Chr7g0219051 23.095 420 272 14 36 435 52 440 2.44e-14 75.1
Msa0546300 MtrunA17_Chr1g0199971 31.081 148 88 5 36 173 50 193 1.46e-13 72.4
Msa0546300 MtrunA17_Chr2g0318911 27.485 171 112 6 36 197 58 225 1.93e-13 72.0
Msa0546300 MtrunA17_Chr4g0068861 30.137 146 89 6 36 173 102 242 5.48e-12 67.8
Msa0546300 MtrunA17_Chr2g0285371 23.371 445 251 19 34 435 49 446 1.02e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0546300 AT2G27920.1 65.207 411 141 1 28 436 29 439 0.0 549
Msa0546300 AT2G27920.2 62.088 364 136 1 75 436 4 367 3.68e-157 451
Msa0546300 AT2G27920.3 59.385 325 130 1 114 436 48 372 5.02e-131 384
Msa0546300 AT1G15000.1 26.620 432 251 12 36 451 38 419 2.47e-33 131
Msa0546300 AT3G45010.1 25.472 424 257 12 29 435 97 478 2.00e-30 124
Msa0546300 AT5G22980.1 25.862 406 244 11 44 435 111 473 1.02e-29 121
Msa0546300 AT3G10410.1 25.587 426 252 15 30 436 96 475 2.35e-23 103
Msa0546300 AT3G52010.1 26.555 418 250 18 36 435 82 460 2.04e-21 97.1
Msa0546300 AT4G15100.1 26.190 420 267 16 36 435 61 457 1.89e-19 91.3
Msa0546300 AT4G12910.1 22.366 465 289 16 19 435 34 474 2.06e-19 91.3
Msa0546300 AT1G11080.1 24.821 419 276 15 36 435 67 465 1.23e-18 88.6
Msa0546300 AT1G11080.2 24.821 419 276 15 36 435 67 465 1.32e-18 88.6
Msa0546300 AT3G25420.1 23.210 461 292 18 19 435 29 471 1.43e-18 88.6
Msa0546300 AT1G43780.1 26.482 253 158 7 36 272 54 294 6.11e-18 86.7
Msa0546300 AT2G35780.1 24.048 420 260 15 36 435 47 427 8.78e-18 85.9
Msa0546300 AT5G42240.1 27.600 250 145 8 36 264 49 283 1.29e-17 85.5
Msa0546300 AT4G12910.2 21.853 421 269 13 19 394 34 439 4.27e-17 84.0
Msa0546300 AT3G07990.1 24.883 426 267 17 28 435 43 433 5.21e-17 83.6
Msa0546300 AT5G42230.1 33.333 150 92 3 55 196 60 209 6.10e-17 83.6
Msa0546300 AT5G42230.2 33.333 150 92 3 55 196 60 209 6.10e-17 83.6
Msa0546300 AT3G63470.1 23.472 409 271 15 36 435 98 473 7.35e-17 83.2
Msa0546300 AT5G23210.1 28.692 237 151 8 36 260 68 298 1.28e-16 82.4
Msa0546300 AT5G23210.3 28.692 237 151 8 36 260 68 298 1.37e-16 82.4
Msa0546300 AT2G33530.1 23.430 414 278 14 36 435 50 438 1.69e-16 82.0
Msa0546300 AT1G28110.1 24.460 417 268 14 36 435 48 434 3.49e-16 80.9
Msa0546300 AT1G28110.2 24.460 417 268 14 36 435 48 434 3.49e-16 80.9
Msa0546300 AT3G17180.1 25.746 268 165 11 36 285 56 307 6.31e-16 80.5
Msa0546300 AT2G24010.1 34.694 147 82 5 36 173 47 188 6.74e-16 80.1
Msa0546300 AT3G17180.2 25.746 268 165 11 36 285 56 307 7.24e-16 80.1
Msa0546300 AT5G08260.1 30.000 180 103 6 36 200 56 227 8.38e-16 80.1
Msa0546300 AT4G30810.1 24.814 403 259 18 46 435 67 438 8.59e-16 80.1
Msa0546300 AT2G12480.4 24.483 290 195 6 55 328 63 344 1.45e-15 79.0
Msa0546300 AT2G12480.1 32.000 150 94 3 55 196 63 212 1.81e-15 78.6
Msa0546300 AT2G12480.2 32.000 150 94 3 55 196 63 212 1.91e-15 78.6
Msa0546300 AT2G12480.3 32.000 150 94 3 55 196 63 212 2.10e-15 78.6
Msa0546300 AT3G52020.1 25.118 422 251 20 36 435 96 474 4.70e-15 77.8
Msa0546300 AT1G61130.1 34.752 141 83 3 65 196 75 215 4.89e-15 77.4
Msa0546300 AT2G24000.1 34.014 147 84 5 36 173 47 189 5.22e-15 77.4
Msa0546300 AT2G05850.1 23.877 423 256 17 36 435 81 460 7.34e-15 77.0
Msa0546300 AT3G02110.1 31.655 139 89 2 65 197 81 219 9.12e-15 76.6
Msa0546300 AT2G35770.1 30.168 179 110 6 28 196 47 220 1.15e-13 73.2
Msa0546300 AT1G73290.2 30.345 145 84 4 34 166 47 186 4.62e-13 70.1
Msa0546300 AT4G30610.1 32.258 155 84 6 32 173 45 191 4.68e-13 71.2
Msa0546300 AT1G73280.1 22.803 478 261 18 10 441 13 428 5.43e-13 71.2
Msa0546300 AT1G73280.2 24.375 320 195 11 10 290 13 324 1.10e-12 69.7
Msa0546300 AT1G73290.3 30.345 145 84 4 34 166 47 186 1.32e-12 69.7
Msa0546300 AT1G73290.1 30.345 145 84 4 34 166 47 186 1.64e-12 69.7
Msa0546300 AT1G73300.1 31.034 145 83 4 34 166 48 187 1.73e-12 69.7
Msa0546300 AT1G73300.2 31.034 145 83 4 34 166 48 187 1.73e-12 69.7
Msa0546300 AT5G36180.1 29.814 161 95 5 19 166 32 187 4.07e-12 68.6
Msa0546300 AT2G24010.4 30.864 162 83 6 36 173 18 174 5.29e-12 67.4
Msa0546300 AT5G22960.1 27.027 185 105 6 5 184 8 167 6.04e-12 65.1
Msa0546300 AT3G56540.1 27.848 158 103 5 19 169 79 232 1.09e-11 65.5
Msa0546300 AT2G24010.2 30.864 162 83 6 36 173 47 203 1.10e-11 67.0
Msa0546300 AT2G24010.3 30.864 162 83 6 36 173 18 174 1.17e-11 67.0
Msa0546300 AT1G73270.1 31.034 145 83 4 34 166 48 187 1.65e-11 66.6
Msa0546300 AT5G09640.1 22.484 467 292 18 9 435 7 443 1.67e-11 66.6
Msa0546300 AT1G73270.2 28.977 176 107 5 34 196 48 218 1.76e-11 66.2
Msa0546300 AT1G73310.2 29.655 145 85 4 34 166 48 187 8.71e-11 64.3
Msa0546300 AT1G73310.1 29.655 145 85 4 34 166 48 187 9.87e-11 63.9

Find 120 sgRNAs with CRISPR-Local

Find 453 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACAATTCTATTGGATTCT+TGG 0.200204 4_1:-37676404 Msa0546300:CDS
CCCTGCAACCAGAGAATTAT+TGG 0.209686 4_1:+37679798 None:intergenic
CTTCTTACCTCATCTATTCT+TGG 0.218674 4_1:+37677299 None:intergenic
AGCCACCACCGGTGAGTTTC+CGG 0.231974 4_1:+37672659 None:intergenic
AAACTTGGCCCTTTACTAAA+TGG 0.253144 4_1:-37677500 Msa0546300:CDS
AATTCAACATGGTTGTTAAA+AGG 0.269721 4_1:-37679477 Msa0546300:CDS
GGCAAATTTGCTGTCACTCT+TGG 0.293076 4_1:-37678886 Msa0546300:CDS
GCCAATAATTCTCTGGTTGC+AGG 0.294647 4_1:-37679799 Msa0546300:CDS
CAAGAATCCAATAGAATTGT+AGG 0.295802 4_1:+37676405 None:intergenic
TTGCAGAAGCACACATGTTT+TGG 0.324024 4_1:-37679869 Msa0546300:intron
TAGACTTACGTGACATTCTC+AGG 0.332673 4_1:+37677449 None:intergenic
AAGATAAGTGAAAACTTCAT+TGG 0.346770 4_1:+37677340 None:intergenic
TTACTTACCACAAAATCTTC+TGG 0.356577 4_1:+37678400 None:intergenic
TACATTGTGGCAGAGTCTTA+TGG 0.367175 4_1:-37678910 Msa0546300:CDS
CCCATTCTTCTGATCCATCT+TGG 0.371873 4_1:+37680028 None:intergenic
CAAAAGAATGAAAAGGGTAT+TGG 0.372196 4_1:+37680182 None:intergenic
ACTTATGTAGGTGTGGCATT+AGG 0.381627 4_1:-37678439 Msa0546300:intron
TTATGACACCATTTAGTAAA+GGG 0.401053 4_1:+37677492 None:intergenic
GAGAAGAAGACCCTGTCCTT+AGG 0.409718 4_1:+37677537 None:intergenic
GAAGAATCTTCCACTCTGTA+TGG 0.410067 4_1:+37679831 None:intergenic
GTCTCAAGACTCGATGATAA+TGG 0.410949 4_1:-37678155 Msa0546300:CDS
GTTTATATATAGTAGAGAAT+TGG 0.416548 4_1:+37680204 None:intergenic
CCAAGATGGATCAGAAGAAT+GGG 0.416640 4_1:-37680028 Msa0546300:CDS
AACAACCATGTTGAATTCCT+TGG 0.417373 4_1:+37679483 None:intergenic
GAGAAGCAAAAGAATGAAAA+GGG 0.421945 4_1:+37680176 None:intergenic
AGAGAAGCAAAAGAATGAAA+AGG 0.421991 4_1:+37680175 None:intergenic
AACCCAAGCTTCAGTCCCTT+TGG 0.424615 4_1:+37676844 None:intergenic
TACAATTTCTTGGTCGATGC+GGG 0.430582 4_1:-37677641 Msa0546300:CDS
TTCTTGGTCGATGCGGGAAG+TGG 0.440552 4_1:-37677635 Msa0546300:CDS
GATAGTAACATTGGCTCCCT+TGG 0.440557 4_1:+37677146 None:intergenic
AAGAGAAGAACGATGGGAAA+AGG 0.442411 4_1:+37680096 None:intergenic
AAACTGTATCCTGTTCCAAC+TGG 0.449212 4_1:+37679045 None:intergenic
TTCTATTGGATTCTTGGAGC+TGG 0.449461 4_1:-37676398 Msa0546300:CDS
AGAAGAAGACCCTGTCCTTA+GGG 0.450693 4_1:+37677538 None:intergenic
AAAAGGAGATCTCTTGTTTG+TGG 0.452395 4_1:-37679460 Msa0546300:intron
GATAGGGTGCTTCAAGTGTT+GGG 0.454781 4_1:-37679551 Msa0546300:intron
ATCTGAATTTGCAGTTGTCA+TGG 0.459985 4_1:-37678196 Msa0546300:intron
TCTTTATTCCGTAGGTGGGA+AGG 0.462971 4_1:-37676515 Msa0546300:intron
AAGGGACTGAAGCTTGGGTT+AGG 0.462980 4_1:-37676841 Msa0546300:CDS
ACCAAGATGGATCAGAAGAA+TGG 0.467901 4_1:-37680029 Msa0546300:CDS
TACCAAAGGGACTGAAGCTT+GGG 0.469620 4_1:-37676846 Msa0546300:CDS
GGATAGGGTGCTTCAAGTGT+TGG 0.474248 4_1:-37679552 Msa0546300:intron
CTACCAAAGGGACTGAAGCT+TGG 0.476951 4_1:-37676847 Msa0546300:CDS
TTTATGACACCATTTAGTAA+AGG 0.477365 4_1:+37677491 None:intergenic
CCTTAGGGAAGTAAGATACT+TGG 0.479071 4_1:+37677553 None:intergenic
CAGGACAATCCAGTTGGAAC+AGG 0.483965 4_1:-37679054 Msa0546300:CDS
TCTGAATTTGCAGTTGTCAT+GGG 0.484342 4_1:-37678195 Msa0546300:intron
AGGACAGGGTCTTCTTCTCC+TGG 0.484963 4_1:-37677533 Msa0546300:CDS
ATCTAATTTGTGCTACCAAA+GGG 0.486363 4_1:-37676859 Msa0546300:CDS
CTTTATTCCGTAGGTGGGAA+GGG 0.493124 4_1:-37676514 Msa0546300:intron
CCTGGTGGTGATGATAAACT+TGG 0.495610 4_1:-37677515 Msa0546300:CDS
GAGTTTCCGGTCATCTTCTC+CGG 0.495917 4_1:+37672672 None:intergenic
GATTAATAAAAGAAAGATCA+AGG 0.496246 4_1:-37677586 Msa0546300:CDS
CGGCGATGTGTTTAGAATGA+AGG 0.499957 4_1:-37672633 None:intergenic
TATCTTACTTCCCTAAGGAC+AGG 0.502007 4_1:-37677548 Msa0546300:CDS
AGCCATGGCCAATAATTCTC+TGG 0.505294 4_1:-37679806 Msa0546300:CDS
GGTGCTTCAAGTGTTGGGAT+TGG 0.517501 4_1:-37679546 Msa0546300:CDS
AAATTGAAACTTACACTTGG+AGG 0.521572 4_1:-37678832 Msa0546300:intron
TAAAAGAAAGATCAAGGAAG+AGG 0.522688 4_1:-37677580 Msa0546300:CDS
TTAATGATGCAACTGACTCA+TGG 0.525154 4_1:-37677960 Msa0546300:CDS
AACCAGAGAATTATTGGCCA+TGG 0.526681 4_1:+37679804 None:intergenic
TGGATACCAGCTTGAAGCCA+AGG 0.530260 4_1:-37679500 Msa0546300:CDS
TGAATTCCTTGGCTTCAAGC+TGG 0.530298 4_1:+37679494 None:intergenic
GACCGGAAACTCACCGGTGG+TGG 0.530496 4_1:-37672661 Msa0546300:CDS
TCCATTGTAGATAGTAACAT+TGG 0.536914 4_1:+37677137 None:intergenic
ATCAAGAAGCAACTTGAAGA+TGG 0.537399 4_1:-37677988 Msa0546300:CDS
ACTCACCGGTGGTGGCTCTC+CGG 0.538601 4_1:-37672653 Msa0546300:CDS
GATCTAATTTGTGCTACCAA+AGG 0.546200 4_1:-37676860 Msa0546300:CDS
CACAAGCCGGAGAAGATGAC+CGG 0.547830 4_1:-37672678 Msa0546300:CDS
TTTGTTACCACCACAGTAGA+GGG 0.555703 4_1:+37676460 None:intergenic
AAGACTCGATGATAATGGAC+TGG 0.560259 4_1:-37678150 Msa0546300:CDS
GAAAGGAAGAGAAGAACGAT+GGG 0.561094 4_1:+37680090 None:intergenic
AAAGAGTCCTTTGTACATTG+TGG 0.565413 4_1:-37678923 Msa0546300:CDS
ATATCCTCTGTCCTTGACAC+TGG 0.567477 4_1:-37680325 Msa0546300:five_prime_UTR
GACATATCAGCAATGGCAGT+AGG 0.570461 4_1:-37677608 Msa0546300:CDS
CCAATAATTCTCTGGTTGCA+GGG 0.571892 4_1:-37679798 Msa0546300:CDS
CCAAGTATCTTACTTCCCTA+AGG 0.573294 4_1:-37677553 Msa0546300:CDS
CTTCATTCTAAACACATCGC+CGG 0.576048 4_1:+37672634 None:intergenic
CTTGAGACGTCTTTGAGTAG+AGG 0.578247 4_1:+37678170 None:intergenic
AAGAAATTGAAACTTACACT+TGG 0.579577 4_1:-37678835 Msa0546300:CDS
TGAAAGGAAGAGAAGAACGA+TGG 0.582873 4_1:+37680089 None:intergenic
CTGAATTTGCAGTTGTCATG+GGG 0.584944 4_1:-37678194 Msa0546300:intron
CAATAGAAGAAAACACAAGC+CGG 0.586867 4_1:-37672691 Msa0546300:intron
TGAAATGATTATAGATGGGG+AGG 0.588913 4_1:-37677368 Msa0546300:intron
TGGAAGATTCTTCAAAGCCA+TGG 0.593562 4_1:-37679821 Msa0546300:CDS
GGCTTCAAGCTGGTATCCAA+AGG 0.594499 4_1:+37679504 None:intergenic
ATTTGTTACCACCACAGTAG+AGG 0.594837 4_1:+37676459 None:intergenic
TTACAATTTCTTGGTCGATG+CGG 0.596051 4_1:-37677642 Msa0546300:CDS
GCCAATGTTACTATCTACAA+TGG 0.596962 4_1:-37677138 Msa0546300:CDS
GTGTGGCATTAGGAGACAGT+TGG 0.599447 4_1:-37678429 Msa0546300:CDS
AATGACGCAATGATACGGAT+AGG 0.601072 4_1:+37680283 None:intergenic
AGACTTACGTGACATTCTCA+GGG 0.602881 4_1:+37677450 None:intergenic
GGTTGATCAGCTACTGACCA+AGG 0.605656 4_1:-37677163 Msa0546300:CDS
GAAGATGACCGGAAACTCAC+CGG 0.606124 4_1:-37672667 Msa0546300:CDS
TATGAAGCCAAGAATAGATG+AGG 0.609873 4_1:-37677306 Msa0546300:intron
GTTAGTGTGTGCGTGTGAGT+AGG 0.615819 4_1:+37680384 None:intergenic
ATAACACAGGACAATCCAGT+TGG 0.618495 4_1:-37679060 Msa0546300:intron
GACTCTGCCACAATGTACAA+AGG 0.618531 4_1:+37678916 None:intergenic
TGGTTCAGACATATCAGCAA+TGG 0.623686 4_1:-37677615 Msa0546300:CDS
TATATACGCTGCCAGTGTCA+AGG 0.630669 4_1:+37680314 None:intergenic
ACAGGGTCTTCTTCTCCTGG+TGG 0.631577 4_1:-37677530 Msa0546300:CDS
ATCTTACTTCCCTAAGGACA+GGG 0.631973 4_1:-37677547 Msa0546300:CDS
CCAAGTTTATCATCACCACC+AGG 0.637624 4_1:+37677515 None:intergenic
TTCAATAAGCAGCAACAATG+TGG 0.638580 4_1:-37677917 Msa0546300:intron
CATCGCCGGAGAGCCACCAC+CGG 0.644465 4_1:+37672648 None:intergenic
CAACAATGTTGTCAAATCTG+TGG 0.659803 4_1:+37678978 None:intergenic
TGAAGCCAAGGAATTCAACA+TGG 0.659940 4_1:-37679488 Msa0546300:CDS
TGGAGATCAGTATTGCTCAG+AGG 0.661077 4_1:-37678011 Msa0546300:intron
GGTGGTAACAAATCGACCAA+AGG 0.673311 4_1:-37676449 Msa0546300:CDS
GCTGCCAGTGTCAAGGACAG+AGG 0.675187 4_1:+37680321 None:intergenic
GACAGAACACCCCTCTACTG+TGG 0.677504 4_1:-37676470 Msa0546300:CDS
AGAACACCCCTCTACTGTGG+TGG 0.678028 4_1:-37676467 Msa0546300:CDS
TTGTTACCACCACAGTAGAG+GGG 0.680201 4_1:+37676461 None:intergenic
CAAGATGGATCAGAAGAATG+GGG 0.681105 4_1:-37680027 Msa0546300:CDS
GTTGATCAGCTACTGACCAA+GGG 0.682526 4_1:-37677162 Msa0546300:CDS
ATAATTCTCTGGTTGCAGGG+TGG 0.685909 4_1:-37679795 Msa0546300:CDS
GAAATGATTATAGATGGGGA+GGG 0.690725 4_1:-37677367 Msa0546300:intron
TTATAAAAGTCCATACAGAG+TGG 0.699820 4_1:-37679841 Msa0546300:CDS
ATTGTGGCAGAGTCTTATGG+TGG 0.700649 4_1:-37678907 Msa0546300:CDS
GATGACCGGAAACTCACCGG+TGG 0.742672 4_1:-37672664 Msa0546300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAGTTTAATACAAAA+GGG + chr4_1:37674522-37674541 None:intergenic 10.0%
!! TAAAAATAGTTTAATACAAA+AGG + chr4_1:37674523-37674542 None:intergenic 10.0%
!!! TTAATTTTAAATTACAGTTA+TGG - chr4_1:37674692-37674711 Msa0546300:intron 10.0%
!!! ATTTTTTTTATTTTTTTTCG+AGG - chr4_1:37675773-37675792 Msa0546300:intron 10.0%
!!! TTTTTTTTATTTTTTTTCGA+GGG - chr4_1:37675774-37675793 Msa0546300:intron 10.0%
!!! TTTTATTTTAATTATAAGCT+TGG - chr4_1:37675800-37675819 Msa0546300:intron 10.0%
!!! TTATATATTTATAGTTGATA+TGG + chr4_1:37676769-37676788 None:intergenic 10.0%
!!! TATTTGAATTTTAGTTTTTA+AGG - chr4_1:37676841-37676860 Msa0546300:CDS 10.0%
!! AAATAAAATAAGTTATTGAT+TGG - chr4_1:37678525-37678544 Msa0546300:intron 10.0%
!!! AATAAAATAAGTTATTGATT+GGG - chr4_1:37678526-37678545 Msa0546300:intron 10.0%
!! ATTTCACTTATATTTAAAAA+CGG + chr4_1:37678758-37678777 None:intergenic 10.0%
!!! ATAAGAAAAATTCATTTTTT+AGG + chr4_1:37678856-37678875 None:intergenic 10.0%
!!! ATTTTTCTTATATTTAGAAA+CGG - chr4_1:37678865-37678884 Msa0546300:CDS 10.0%
!! ACTTATATGAATTAAATACA+AGG + chr4_1:37673674-37673693 None:intergenic 15.0%
!!! ATCAAATATTTTTAGTGATT+TGG + chr4_1:37673740-37673759 None:intergenic 15.0%
!!! AAAATCATACTTTTTCTTTA+AGG + chr4_1:37674556-37674575 None:intergenic 15.0%
!!! TTAAAGAAAAAGTATGATTT+TGG - chr4_1:37674555-37674574 Msa0546300:intron 15.0%
!!! TAAAGAAAAAGTATGATTTT+GGG - chr4_1:37674556-37674575 Msa0546300:intron 15.0%
!! GTTCAATAAAATAAACTTAT+TGG + chr4_1:37674665-37674684 None:intergenic 15.0%
!!! GCATTTTCTTAAATTATTAT+CGG - chr4_1:37675296-37675315 Msa0546300:intron 15.0%
!!! CTTAAATTTTTTGTTGAAAT+AGG - chr4_1:37675357-37675376 Msa0546300:intron 15.0%
!!! TTAATAATTTTAACCTTTAC+AGG - chr4_1:37675842-37675861 Msa0546300:intron 15.0%
!!! TAGTTCAATTAGTTTAATTA+CGG + chr4_1:37676398-37676417 None:intergenic 15.0%
!! CTAGTTACTATTAATAAATT+TGG - chr4_1:37676904-37676923 Msa0546300:intron 15.0%
!! TATTAATAAATTTGGAAATG+TGG - chr4_1:37676912-37676931 Msa0546300:intron 15.0%
!!! TTTCCAAATTCTATATTTTA+CGG - chr4_1:37677037-37677056 Msa0546300:intron 15.0%
!! AATAAACAAACCAAAAATAA+GGG + chr4_1:37677224-37677243 None:intergenic 15.0%
!! AAATAAACAAACCAAAAATA+AGG + chr4_1:37677225-37677244 None:intergenic 15.0%
!! TACTACTGTAAATAATAATA+AGG + chr4_1:37678440-37678459 None:intergenic 15.0%
!! ATTTACAGTAGTATATAAAA+TGG - chr4_1:37678447-37678466 Msa0546300:intron 15.0%
!!! ATAAGTGAAATTCATTTTTT+AGG - chr4_1:37678767-37678786 Msa0546300:intron 15.0%
!! CATTTATTTAATGATATATG+TGG - chr4_1:37678792-37678811 Msa0546300:intron 15.0%
!! TTGAGAAAAATCTTTATTAA+GGG + chr4_1:37679031-37679050 None:intergenic 15.0%
!! TTTGAGAAAAATCTTTATTA+AGG + chr4_1:37679032-37679051 None:intergenic 15.0%
!!! TTTTATTACTTTTTTAAACG+TGG - chr4_1:37679386-37679405 Msa0546300:intron 15.0%
!!! TTTATTACTTTTTTAAACGT+GGG - chr4_1:37679387-37679406 Msa0546300:intron 15.0%
!! GTTTATATATAGTAGAGAAT+TGG + chr4_1:37672825-37672844 None:intergenic 20.0%
!!! TCTTTTTTTCCTTCAAAAAA+TGG - chr4_1:37672896-37672915 Msa0546300:intron 20.0%
!!! ATGAGATATTTTCATATCAT+TGG - chr4_1:37673453-37673472 Msa0546300:intron 20.0%
!!! ATATTTTCATATCATTGGAT+AGG - chr4_1:37673458-37673477 Msa0546300:intron 20.0%
!!! TATTTTCATATCATTGGATA+GGG - chr4_1:37673459-37673478 Msa0546300:intron 20.0%
!! TAAAATAACTATGACGATTA+CGG + chr4_1:37673819-37673838 None:intergenic 20.0%
!! TGAAAGAGTAAAACTATTTA+TGG - chr4_1:37673869-37673888 Msa0546300:intron 20.0%
!!! ATTGGTCTTATTTCAATTTA+TGG - chr4_1:37674264-37674283 Msa0546300:intron 20.0%
!! ATATAATTCAGTGTAATCAT+AGG - chr4_1:37674367-37674386 Msa0546300:intron 20.0%
!! ATAAATTCTGACTAATGAAT+GGG - chr4_1:37674452-37674471 Msa0546300:intron 20.0%
!! AAATTTCTACTTGAAAAGAT+GGG + chr4_1:37674927-37674946 None:intergenic 20.0%
!! AAAATTTCTACTTGAAAAGA+TGG + chr4_1:37674928-37674947 None:intergenic 20.0%
!! ATATAAGAGAACTCATTTAT+GGG + chr4_1:37675160-37675179 None:intergenic 20.0%
!! TATATAAGAGAACTCATTTA+TGG + chr4_1:37675161-37675180 None:intergenic 20.0%
!!! ATAGGATTTTTACAATTTCT+TGG - chr4_1:37675375-37675394 Msa0546300:intron 20.0%
!! GATTAATAAAAGAAAGATCA+AGG - chr4_1:37675440-37675459 Msa0546300:intron 20.0%
!! TTAGTTTCGATAATAATAAG+AGG - chr4_1:37675938-37675957 Msa0546300:intron 20.0%
!! GAAAATGAATAAGATACTAT+TGG - chr4_1:37675960-37675979 Msa0546300:intron 20.0%
!! AAAGTGTGTTTGATTATTAT+AGG - chr4_1:37676141-37676160 Msa0546300:intron 20.0%
!! AAAGCCAATGTTATAAAAAT+CGG - chr4_1:37676268-37676287 Msa0546300:intron 20.0%
!! AGTTTAATTACGGTTTAATT+TGG + chr4_1:37676388-37676407 None:intergenic 20.0%
!!! ATTCTTATCTTCTTTTTTCA+CGG - chr4_1:37676810-37676829 Msa0546300:intron 20.0%
!! AAACCGTAAAATATAGAATT+TGG + chr4_1:37677043-37677062 None:intergenic 20.0%
!! TCTTAAAATATGACAAACTA+AGG - chr4_1:37677128-37677147 Msa0546300:intron 20.0%
!! ATGTATTTATATTTAGTGTC+TGG - chr4_1:37677175-37677194 Msa0546300:intron 20.0%
!!! AGATAAAATTCCCTTATTTT+TGG - chr4_1:37677211-37677230 Msa0546300:intron 20.0%
!!! GTAGTACTATAATTTTAATG+TGG + chr4_1:37677264-37677283 None:intergenic 20.0%
!!! GTATTTTCTTCAAAATACTT+AGG - chr4_1:37677325-37677344 Msa0546300:CDS 20.0%
!! TGAAAATAATGCAAGAAAAA+AGG - chr4_1:37677649-37677668 Msa0546300:CDS 20.0%
!! GAAAATAATGCAAGAAAAAA+GGG - chr4_1:37677650-37677669 Msa0546300:CDS 20.0%
!! TCTTTAGTAAGAAGAAAAAA+AGG - chr4_1:37677820-37677839 Msa0546300:intron 20.0%
!! CATTCATTTAATGATATATG+TGG - chr4_1:37677959-37677978 Msa0546300:CDS 20.0%
!!! ATAAGCAAAAATCAACATTT+TGG + chr4_1:37678020-37678039 None:intergenic 20.0%
!!! TTTCATTTTGTTATGTCATA+AGG - chr4_1:37678080-37678099 Msa0546300:intron 20.0%
!! TGTAAATAATAATAAGGACA+AGG + chr4_1:37678434-37678453 None:intergenic 20.0%
!! TTACTATTATTCAGAAAACA+GGG + chr4_1:37678507-37678526 None:intergenic 20.0%
!! TTTACTATTATTCAGAAAAC+AGG + chr4_1:37678508-37678527 None:intergenic 20.0%
!! GATATATGTGGTTTATAATA+TGG - chr4_1:37678804-37678823 Msa0546300:intron 20.0%
!! CATTTATTTAATGATGTATG+TGG + chr4_1:37678831-37678850 None:intergenic 20.0%
!!! AAGATTTTTCTCAAAAATGA+TGG - chr4_1:37679037-37679056 Msa0546300:CDS 20.0%
!! TTATTAAAAAACTACCATTG+TGG + chr4_1:37679117-37679136 None:intergenic 20.0%
!!! ACAATGGTAGTTTTTTAATA+AGG - chr4_1:37679116-37679135 Msa0546300:intron 20.0%
!!! CATATTTAAGTATTTTTCAG+TGG + chr4_1:37679247-37679266 None:intergenic 20.0%
!! TTTAATGATGTAAAGATAGT+GGG + chr4_1:37679271-37679290 None:intergenic 20.0%
!! TAATAAAATGTGTACTACTT+TGG + chr4_1:37679333-37679352 None:intergenic 20.0%
!! AAGACAAACTAAAAAAGATT+TGG + chr4_1:37679796-37679815 None:intergenic 20.0%
!! TCAAGAAGATTAAACAATAT+AGG + chr4_1:37679986-37680005 None:intergenic 20.0%
!!! GAAGTTTTTCCATTTTTTGA+AGG + chr4_1:37672908-37672927 None:intergenic 25.0%
! GTAGAAGAAAAAATGATGAA+AGG + chr4_1:37672956-37672975 None:intergenic 25.0%
! ATAAACACAAAAGACTTACT+AGG + chr4_1:37673041-37673060 None:intergenic 25.0%
!! TAGTAAGTCTTTTGTGTTTA+TGG - chr4_1:37673040-37673059 Msa0546300:intron 25.0%
! TTATACACAAACACAGAAAA+TGG + chr4_1:37673434-37673453 None:intergenic 25.0%
! AATTCAACATGGTTGTTAAA+AGG - chr4_1:37673549-37673568 Msa0546300:intron 25.0%
!!! AAATCTTGTTTTTGACTATG+TGG - chr4_1:37673911-37673930 Msa0546300:intron 25.0%
! AAGAAATTGAAACTTACACT+TGG - chr4_1:37674191-37674210 Msa0546300:intron 25.0%
! CATAAATTCTGACTAATGAA+TGG - chr4_1:37674451-37674470 Msa0546300:intron 25.0%
! ACCTTTATATTGTGGTAAAA+TGG - chr4_1:37674726-37674745 Msa0546300:intron 25.0%
!! TCCATTTTACCACAATATAA+AGG + chr4_1:37674730-37674749 None:intergenic 25.0%
!! TTTATCTAACAAACCCATTT+TGG - chr4_1:37674995-37675014 Msa0546300:intron 25.0%
! CAGACTTAATATATACATTG+TGG + chr4_1:37675189-37675208 None:intergenic 25.0%
! TTATGACACCATTTAGTAAA+GGG + chr4_1:37675537-37675556 None:intergenic 25.0%
! TTTATGACACCATTTAGTAA+AGG + chr4_1:37675538-37675557 None:intergenic 25.0%
!! AACTTTTCATTCATGGTTAA+AGG + chr4_1:37675608-37675627 None:intergenic 25.0%
!! TGAACAAAACTTTTCATTCA+TGG + chr4_1:37675615-37675634 None:intergenic 25.0%
! ATCCATGAAATGATTATAGA+TGG - chr4_1:37675653-37675672 Msa0546300:intron 25.0%
! TCCATGAAATGATTATAGAT+GGG - chr4_1:37675654-37675673 Msa0546300:intron 25.0%
! AAGATAAGTGAAAACTTCAT+TGG + chr4_1:37675689-37675708 None:intergenic 25.0%
!! CATTAAAATGTGTTTTCCTT+CGG - chr4_1:37676106-37676125 Msa0546300:intron 25.0%
!!! CTTTAATGTTTTTTTTCCGA+AGG + chr4_1:37676125-37676144 None:intergenic 25.0%
!!! TTTTTATAACATTGGCTTTG+AGG + chr4_1:37676267-37676286 None:intergenic 25.0%
!! TGATCCGATTTTTATAACAT+TGG + chr4_1:37676275-37676294 None:intergenic 25.0%
! ACAAAAACCTACAATTCTAT+TGG - chr4_1:37676614-37676633 Msa0546300:intron 25.0%
!!! ATAGTTGTTTTAGTGATGAT+TGG + chr4_1:37676672-37676691 None:intergenic 25.0%
!! TTTTCTTCTTACTAAAGAGA+CGG + chr4_1:37677818-37677837 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + chr4_1:37678029-37678048 None:intergenic 25.0%
! TAAGCAAAAAGCAATATTGT+AGG - chr4_1:37677934-37677953 Msa0546300:CDS 25.0%
! CATTCATTTAATGATGTATG+TGG + chr4_1:37677994-37678013 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - chr4_1:37678029-37678048 Msa0546300:intron 25.0%
! ATCATTTGTAATGAAACACA+AGG + chr4_1:37678171-37678190 None:intergenic 25.0%
!! GATGGAGTACTTTAATTTAT+GGG + chr4_1:37678736-37678755 None:intergenic 25.0%
! CACTTATATTTAAAAACGGA+TGG + chr4_1:37678754-37678773 None:intergenic 25.0%
! TTTCTTATATTTAGAAACGG+AGG - chr4_1:37678868-37678887 Msa0546300:CDS 25.0%
! TTCTTATATTTAGAAACGGA+GGG - chr4_1:37678869-37678888 Msa0546300:CDS 25.0%
!! ATTTTTCTCAAAAATGATGG+TGG - chr4_1:37679040-37679059 Msa0546300:CDS 25.0%
!! TTTTTCTCAAAAATGATGGT+GGG - chr4_1:37679041-37679060 Msa0546300:CDS 25.0%
! GTTTAATGATGTAAAGATAG+TGG + chr4_1:37679272-37679291 None:intergenic 25.0%
!! TATTACTCCTTTTTACAAGT+GGG - chr4_1:37679306-37679325 Msa0546300:intron 25.0%
!! TTATTACTCTTTTATGCAAG+TGG - chr4_1:37679347-37679366 Msa0546300:intron 25.0%
!! TATTACTCTTTTATGCAAGT+GGG - chr4_1:37679348-37679367 Msa0546300:intron 25.0%
! GTAATAAAATGTGTACTACT+TGG + chr4_1:37679334-37679353 None:intergenic 25.0%
!! TTCAAGACATAGTTTCTTTT+TGG - chr4_1:37679637-37679656 Msa0546300:intron 25.0%
!! TCAAGACATAGTTTCTTTTT+GGG - chr4_1:37679638-37679657 Msa0546300:intron 25.0%
!!! TTCTAAAGCTTTTAAGAAAC+TGG + chr4_1:37679940-37679959 None:intergenic 25.0%
!!! GTTCATCATTTTTACTTCTA+TGG + chr4_1:37680168-37680187 None:intergenic 25.0%
TGAAAAATGACGCAATGATA+CGG + chr4_1:37672751-37672770 None:intergenic 30.0%
! CAAAAGAATGAAAAGGGTAT+TGG + chr4_1:37672847-37672866 None:intergenic 30.0%
GAGAAGCAAAAGAATGAAAA+GGG + chr4_1:37672853-37672872 None:intergenic 30.0%
AGAGAAGCAAAAGAATGAAA+AGG + chr4_1:37672854-37672873 None:intergenic 30.0%
TTATAAAAGTCCATACAGAG+TGG - chr4_1:37673185-37673204 Msa0546300:intron 30.0%
ATCTATGTAATCATGTGTGT+TGG - chr4_1:37673349-37673368 Msa0546300:intron 30.0%
!! ATTGGAAATTTTGAAGAGGT+TGG - chr4_1:37673498-37673517 Msa0546300:intron 30.0%
!!! AAAAGCACTTTTCATGATGA+TGG + chr4_1:37673615-37673634 None:intergenic 30.0%
TTGATGTCATATGATAACAC+AGG - chr4_1:37673953-37673972 Msa0546300:intron 30.0%
AAATTGAAACTTACACTTGG+AGG - chr4_1:37674194-37674213 Msa0546300:intron 30.0%
TAGTCAGAATTTATGAAGCA+TGG + chr4_1:37674446-37674465 None:intergenic 30.0%
!! TAACTTGTTCTTCTTTGTGT+TGG - chr4_1:37674481-37674500 Msa0546300:intron 30.0%
! TGGGAAACTTTTACTTATGT+AGG - chr4_1:37674575-37674594 Msa0546300:intron 30.0%
! AACTTTTACTTATGTAGGTG+TGG - chr4_1:37674580-37674599 Msa0546300:intron 30.0%
TTACTTACCACAAAATCTTC+TGG + chr4_1:37674629-37674648 None:intergenic 30.0%
TAAAAGAAAGATCAAGGAAG+AGG - chr4_1:37675446-37675465 Msa0546300:intron 30.0%
CCATGAAATGATTATAGATG+GGG - chr4_1:37675655-37675674 Msa0546300:intron 30.0%
! GAAGTTTTCACTTATCTTGA+AGG - chr4_1:37675691-37675710 Msa0546300:intron 30.0%
TCCATTGTAGATAGTAACAT+TGG + chr4_1:37675892-37675911 None:intergenic 30.0%
! ATCTAATTTGTGCTACCAAA+GGG - chr4_1:37676167-37676186 Msa0546300:intron 30.0%
ATCTTCTTTCTTTATTCCGT+AGG - chr4_1:37676503-37676522 Msa0546300:CDS 30.0%
GTATGACTTGAAAAATCCTT+TGG + chr4_1:37676596-37676615 None:intergenic 30.0%
CAAGAATCCAATAGAATTGT+AGG + chr4_1:37676624-37676643 None:intergenic 30.0%
CTACAATTCTATTGGATTCT+TGG - chr4_1:37676622-37676641 Msa0546300:intron 30.0%
AAAATTCTATGTGAGCAAGA+AGG - chr4_1:37677080-37677099 Msa0546300:intron 30.0%
AAATTCTATGTGAGCAAGAA+GGG - chr4_1:37677081-37677100 Msa0546300:intron 30.0%
TCAAAATACTTAGGTGACAT+TGG - chr4_1:37677334-37677353 Msa0546300:CDS 30.0%
GAGGAAACATTATGGATTTA+TGG - chr4_1:37677777-37677796 Msa0546300:intron 30.0%
AACATTATGGATTTATGGTC+AGG - chr4_1:37677782-37677801 Msa0546300:intron 30.0%
ACTGAAGTTATGCATAGAAA+AGG - chr4_1:37678225-37678244 Msa0546300:intron 30.0%
CAACAATGAATTCTCTTTCA+TGG + chr4_1:37678282-37678301 None:intergenic 30.0%
!! TGGACTTTTTCTTCTGAATT+TGG - chr4_1:37678467-37678486 Msa0546300:intron 30.0%
! GGATGGAGTACTTTAATTTA+TGG + chr4_1:37678737-37678756 None:intergenic 30.0%
!!! GGCTAGTGTATTGTTTTTTA+TGG - chr4_1:37678898-37678917 Msa0546300:CDS 30.0%
AATCTTTATTAAGGGCCAAA+AGG + chr4_1:37679023-37679042 None:intergenic 30.0%
CCTTATTAGTGTATTGTCAT+TGG + chr4_1:37679221-37679240 None:intergenic 30.0%
CCAATGACAATACACTAATA+AGG - chr4_1:37679218-37679237 Msa0546300:intron 30.0%
CACTTGTAAAAAGGAGTAAT+AGG + chr4_1:37679307-37679326 None:intergenic 30.0%
! CTATTACTCCTTTTTACAAG+TGG - chr4_1:37679305-37679324 Msa0546300:intron 30.0%
!!! ATTTTTTCTTCCTCCAATGA+AGG - chr4_1:37679473-37679492 Msa0546300:CDS 30.0%
!!! TTTTTTCTTCCTCCAATGAA+GGG - chr4_1:37679474-37679493 Msa0546300:CDS 30.0%
! AAAAGTAGCAACTTTTGCAT+TGG - chr4_1:37679572-37679591 Msa0546300:intron 30.0%
! CTTTTGCATTGGAAATTGTA+TGG - chr4_1:37679583-37679602 Msa0546300:intron 30.0%
GTTATGACTTTAACATGTGT+TGG - chr4_1:37679605-37679624 Msa0546300:intron 30.0%
!! GTTTCTTTTTGGGAAATGTT+AGG - chr4_1:37679648-37679667 Msa0546300:intron 30.0%
TGTTTGCCATTAGATTAAAG+TGG - chr4_1:37679722-37679741 Msa0546300:intron 30.0%
ATTGCTCCACTTTAATCTAA+TGG + chr4_1:37679731-37679750 None:intergenic 30.0%
TGTACAACTATAACAACCTT+CGG - chr4_1:37679884-37679903 Msa0546300:intron 30.0%
AACTCATTACTTTCATGTTG+AGG + chr4_1:37679912-37679931 None:intergenic 30.0%
!! AAAGCTTTTAAGAAACTGGA+CGG + chr4_1:37679936-37679955 None:intergenic 30.0%
ACAGCTTTCAAAAACCAAGA+TGG - chr4_1:37672984-37673003 Msa0546300:intron 35.0%
!! CCAATCAAAGAGTACTTACA+GGG + chr4_1:37673257-37673276 None:intergenic 35.0%
!! ACCAATCAAAGAGTACTTAC+AGG + chr4_1:37673258-37673277 None:intergenic 35.0%
AATGGATAGTAAAGCTCTTC+AGG + chr4_1:37673416-37673435 None:intergenic 35.0%
!! TGGGATTGGAAATTTTGAAG+AGG - chr4_1:37673494-37673513 Msa0546300:intron 35.0%
AACAACCATGTTGAATTCCT+TGG + chr4_1:37673546-37673565 None:intergenic 35.0%
! AAAAGGAGATCTCTTGTTTG+TGG - chr4_1:37673566-37673585 Msa0546300:intron 35.0%
! GATCTCTTGTTTGTGGTAAT+TGG - chr4_1:37673573-37673592 Msa0546300:intron 35.0%
CAACAATGTTGTCAAATCTG+TGG + chr4_1:37674051-37674070 None:intergenic 35.0%
AAAGAGTCCTTTGTACATTG+TGG - chr4_1:37674103-37674122 Msa0546300:intron 35.0%
! TGAGATCTGAAATCTGAAGA+TGG + chr4_1:37674243-37674262 None:intergenic 35.0%
TCAGATTTCAGATCTCAGAT+TGG - chr4_1:37674246-37674265 Msa0546300:intron 35.0%
! TGTAATCATAGGTGTTGTGT+CGG - chr4_1:37674378-37674397 Msa0546300:intron 35.0%
!! TGTTCTTCTTTGTGTTGGTT+AGG - chr4_1:37674486-37674505 Msa0546300:intron 35.0%
!! TTGTGTTGGTTAGGAAATGA+TGG - chr4_1:37674495-37674514 Msa0546300:intron 35.0%
CTGTAATTGTAGTTGCAATG+CGG - chr4_1:37674761-37674780 Msa0546300:intron 35.0%
ATCTGAATTTGCAGTTGTCA+TGG - chr4_1:37674830-37674849 Msa0546300:intron 35.0%
TCTGAATTTGCAGTTGTCAT+GGG - chr4_1:37674831-37674850 Msa0546300:intron 35.0%
!! ATGGACTGGAAAAATCAAAC+AGG - chr4_1:37674890-37674909 Msa0546300:intron 35.0%
GCAATACTGATCTCCAAAAT+GGG + chr4_1:37675011-37675030 None:intergenic 35.0%
AGCAATACTGATCTCCAAAA+TGG + chr4_1:37675012-37675031 None:intergenic 35.0%
ATCAAGAAGCAACTTGAAGA+TGG - chr4_1:37675038-37675057 Msa0546300:intron 35.0%
! TTAATGATGCAACTGACTCA+TGG - chr4_1:37675066-37675085 Msa0546300:intron 35.0%
TTCAATAAGCAGCAACAATG+TGG - chr4_1:37675109-37675128 Msa0546300:intron 35.0%
!! TTTGATCTAAAGTGTTGGTG+CGG + chr4_1:37675222-37675241 None:intergenic 35.0%
ACATTTCTCTGTGTTGTATC+GGG + chr4_1:37675258-37675277 None:intergenic 35.0%
CACATTTCTCTGTGTTGTAT+CGG + chr4_1:37675259-37675278 None:intergenic 35.0%
TTACAATTTCTTGGTCGATG+CGG - chr4_1:37675384-37675403 Msa0546300:intron 35.0%
AAACTTGGCCCTTTACTAAA+TGG - chr4_1:37675526-37675545 Msa0546300:intron 35.0%
CCCCATCTATAATCATTTCA+TGG + chr4_1:37675658-37675677 None:intergenic 35.0%
TGAAATGATTATAGATGGGG+AGG - chr4_1:37675658-37675677 Msa0546300:intron 35.0%
GAAATGATTATAGATGGGGA+GGG - chr4_1:37675659-37675678 Msa0546300:intron 35.0%
TATGAAGCCAAGAATAGATG+AGG - chr4_1:37675720-37675739 Msa0546300:intron 35.0%
CTTCTTACCTCATCTATTCT+TGG + chr4_1:37675730-37675749 None:intergenic 35.0%
GCCAATGTTACTATCTACAA+TGG - chr4_1:37675888-37675907 Msa0546300:intron 35.0%
! TACTATTGGACATGTTGACT+TGG - chr4_1:37675974-37675993 Msa0546300:intron 35.0%
! GATCTAATTTGTGCTACCAA+AGG - chr4_1:37676166-37676185 Msa0546300:intron 35.0%
AAAAATCGGATCAGACTAGT+CGG - chr4_1:37676282-37676301 Msa0546300:intron 35.0%
!! CATTGATTCGATATTCGATC+CGG - chr4_1:37676437-37676456 Msa0546300:CDS 35.0%
TTCTTTCTTTATTCCGTAGG+TGG - chr4_1:37676506-37676525 Msa0546300:intron 35.0%
TCTTTCTTTATTCCGTAGGT+GGG - chr4_1:37676507-37676526 Msa0546300:intron 35.0%
GAAGGGCTAAAAAGTTTCTT+GGG - chr4_1:37676529-37676548 Msa0546300:intron 35.0%
AAGGGCTAAAAAGTTTCTTG+GGG - chr4_1:37676530-37676549 Msa0546300:intron 35.0%
TGGAAATGTGGAAGATCTTT+AGG - chr4_1:37676924-37676943 Msa0546300:intron 35.0%
GGAAATGTGGAAGATCTTTA+GGG - chr4_1:37676925-37676944 Msa0546300:intron 35.0%
GAAATGTGGAAGATCTTTAG+GGG - chr4_1:37676926-37676945 Msa0546300:intron 35.0%
AAATGTGGAAGATCTTTAGG+GGG - chr4_1:37676927-37676946 Msa0546300:intron 35.0%
AAAGGCAAAGGGTTGTATTT+GGG + chr4_1:37677466-37677485 None:intergenic 35.0%
TGTATCTCTTCAAAGGCAAA+GGG + chr4_1:37677477-37677496 None:intergenic 35.0%
ATGTGTCTGTATCTCTTCAA+AGG + chr4_1:37677484-37677503 None:intergenic 35.0%
GTAATCTCAAATGTCGATGT+CGG - chr4_1:37677537-37677556 Msa0546300:CDS 35.0%
GTCCAAACATTTCTGATTGA+AGG + chr4_1:37677575-37677594 None:intergenic 35.0%
TACCACCATTCAGATCTAAA+TGG - chr4_1:37677722-37677741 Msa0546300:intron 35.0%
ACCACCATTCAGATCTAAAT+GGG - chr4_1:37677723-37677742 Msa0546300:intron 35.0%
GTATCCCATTTAGATCTGAA+TGG + chr4_1:37677730-37677749 None:intergenic 35.0%
TACCTTGTGAGGAAACATTA+TGG - chr4_1:37677769-37677788 Msa0546300:intron 35.0%
ATCCATAATGTTTCCTCACA+AGG + chr4_1:37677774-37677793 None:intergenic 35.0%
TTACTAAAGAGACGGTAACT+AGG + chr4_1:37677810-37677829 None:intergenic 35.0%
! GAAACACAAGGTTGATCATT+GGG + chr4_1:37678159-37678178 None:intergenic 35.0%
! TGAAACACAAGGTTGATCAT+TGG + chr4_1:37678160-37678179 None:intergenic 35.0%
AGGATCAGAAAAAGAATTGC+AGG - chr4_1:37678369-37678388 Msa0546300:intron 35.0%
GGATCAGAAAAAGAATTGCA+GGG - chr4_1:37678370-37678389 Msa0546300:intron 35.0%
TTTAGAAACGGAGGGATTAT+CGG - chr4_1:37678877-37678896 Msa0546300:CDS 35.0%
!!! GAGAAGACATACTTTTTCAG+AGG - chr4_1:37678954-37678973 Msa0546300:CDS 35.0%
!!! AAGACATACTTTTTCAGAGG+TGG - chr4_1:37678957-37678976 Msa0546300:CDS 35.0%
TATCACGTGTGGTCTATTTA+AGG + chr4_1:37679145-37679164 None:intergenic 35.0%
AATAAGTGATGTATCACGTG+TGG + chr4_1:37679156-37679175 None:intergenic 35.0%
AAGGAACGAGCAACTATATA+AGG + chr4_1:37679442-37679461 None:intergenic 35.0%
TATAGTTGCTCGTTCCTTAA+CGG - chr4_1:37679444-37679463 Msa0546300:intron 35.0%
!! TCTTTTTGGGAAATGTTAGG+TGG - chr4_1:37679651-37679670 Msa0546300:intron 35.0%
GAAATGTTAGGTGGCATTTA+GGG - chr4_1:37679660-37679679 Msa0546300:intron 35.0%
ACAAACAACTTTGCCATAGT+GGG + chr4_1:37679705-37679724 None:intergenic 35.0%
AACAAACAACTTTGCCATAG+TGG + chr4_1:37679706-37679725 None:intergenic 35.0%
GTGGAGCAATTAGATTAAAG+TGG - chr4_1:37679741-37679760 Msa0546300:intron 35.0%
! GTGGAGCAATGATTTTATCA+TGG - chr4_1:37679760-37679779 Msa0546300:intron 35.0%
!! AAAATCTGGGTTGGTAATGT+TGG + chr4_1:37679844-37679863 None:intergenic 35.0%
TTAGAGTCATAGTTATGTGC+TGG - chr4_1:37680023-37680042 Msa0546300:CDS 35.0%
CAATAGAAGAAAACACAAGC+CGG - chr4_1:37680335-37680354 Msa0546300:five_prime_UTR 35.0%
AATGACGCAATGATACGGAT+AGG + chr4_1:37672746-37672765 None:intergenic 40.0%
AAGAGAAGAACGATGGGAAA+AGG + chr4_1:37672933-37672952 None:intergenic 40.0%
GAAAGGAAGAGAAGAACGAT+GGG + chr4_1:37672939-37672958 None:intergenic 40.0%
TGAAAGGAAGAGAAGAACGA+TGG + chr4_1:37672940-37672959 None:intergenic 40.0%
ACCAAGATGGATCAGAAGAA+TGG - chr4_1:37672997-37673016 Msa0546300:intron 40.0%
CCAAGATGGATCAGAAGAAT+GGG - chr4_1:37672998-37673017 Msa0546300:intron 40.0%
CAAGATGGATCAGAAGAATG+GGG - chr4_1:37672999-37673018 Msa0546300:intron 40.0%
!! TTGCAGAAGCACACATGTTT+TGG - chr4_1:37673157-37673176 Msa0546300:intron 40.0%
GAAGAATCTTCCACTCTGTA+TGG + chr4_1:37673198-37673217 None:intergenic 40.0%
TGGAAGATTCTTCAAAGCCA+TGG - chr4_1:37673205-37673224 Msa0546300:intron 40.0%
AACCAGAGAATTATTGGCCA+TGG + chr4_1:37673225-37673244 None:intergenic 40.0%
CCAATAATTCTCTGGTTGCA+GGG - chr4_1:37673228-37673247 Msa0546300:intron 40.0%
CCCTGTAAGTACTCTTTGAT+TGG - chr4_1:37673254-37673273 Msa0546300:intron 40.0%
TTATCGATGTCGACATGTGT+CGG + chr4_1:37673310-37673329 None:intergenic 40.0%
!! TTTTGAAGAGGTTGGACCTT+TGG - chr4_1:37673506-37673525 Msa0546300:intron 40.0%
TGAAGCCAAGGAATTCAACA+TGG - chr4_1:37673538-37673557 Msa0546300:intron 40.0%
ACTATGACGATTACGGTGAA+CGG + chr4_1:37673812-37673831 None:intergenic 40.0%
ATAACACAGGACAATCCAGT+TGG - chr4_1:37673966-37673985 Msa0546300:intron 40.0%
AAACTGTATCCTGTTCCAAC+TGG + chr4_1:37673984-37674003 None:intergenic 40.0%
! TGGAACAGGATACAGTTTTG+TGG - chr4_1:37673986-37674005 Msa0546300:intron 40.0%
!! AACAGGATACAGTTTTGTGG+AGG - chr4_1:37673989-37674008 Msa0546300:intron 40.0%
TACATTGTGGCAGAGTCTTA+TGG - chr4_1:37674116-37674135 Msa0546300:intron 40.0%
GCTCAAATTATTATCCGCGT+CGG + chr4_1:37674342-37674361 None:intergenic 40.0%
ACTTATGTAGGTGTGGCATT+AGG - chr4_1:37674587-37674606 Msa0546300:intron 40.0%
! GATCTCACCAGAAGATTTTG+TGG - chr4_1:37674619-37674638 Msa0546300:intron 40.0%
CGCTGCAAACCTTTATATTG+TGG - chr4_1:37674718-37674737 Msa0546300:intron 40.0%
CTGAATTTGCAGTTGTCATG+GGG - chr4_1:37674832-37674851 Msa0546300:intron 40.0%
GTCTCAAGACTCGATGATAA+TGG - chr4_1:37674871-37674890 Msa0546300:intron 40.0%
!! AAGACTCGATGATAATGGAC+TGG - chr4_1:37674876-37674895 Msa0546300:intron 40.0%
GCACCAACACTTTAGATCAA+AGG - chr4_1:37675221-37675240 Msa0546300:intron 40.0%
! ACGCCTTTGATCTAAAGTGT+TGG + chr4_1:37675227-37675246 None:intergenic 40.0%
TACAATTTCTTGGTCGATGC+GGG - chr4_1:37675385-37675404 Msa0546300:intron 40.0%
TGGTTCAGACATATCAGCAA+TGG - chr4_1:37675411-37675430 Msa0546300:intron 40.0%
CCTTAGGGAAGTAAGATACT+TGG + chr4_1:37675476-37675495 None:intergenic 40.0%
CCAAGTATCTTACTTCCCTA+AGG - chr4_1:37675473-37675492 Msa0546300:intron 40.0%
TATCTTACTTCCCTAAGGAC+AGG - chr4_1:37675478-37675497 Msa0546300:intron 40.0%
ATCTTACTTCCCTAAGGACA+GGG - chr4_1:37675479-37675498 Msa0546300:intron 40.0%
AGACTTACGTGACATTCTCA+GGG + chr4_1:37675579-37675598 None:intergenic 40.0%
TAGACTTACGTGACATTCTC+AGG + chr4_1:37675580-37675599 None:intergenic 40.0%
AGTAGCTGATCAACCTGTAA+AGG + chr4_1:37675858-37675877 None:intergenic 40.0%
!! CCAATGTTGACTTGTCTATC+CGG + chr4_1:37676459-37676478 None:intergenic 40.0%
GGAAGGGCTAAAAAGTTTCT+TGG - chr4_1:37676528-37676547 Msa0546300:intron 40.0%
TTTGTTACCACCACAGTAGA+GGG + chr4_1:37676569-37676588 None:intergenic 40.0%
! ATTTGTTACCACCACAGTAG+AGG + chr4_1:37676570-37676589 None:intergenic 40.0%
TTCTATTGGATTCTTGGAGC+TGG - chr4_1:37676628-37676647 Msa0546300:intron 40.0%
! AATGTGGAAGATCTTTAGGG+GGG - chr4_1:37676928-37676947 Msa0546300:intron 40.0%
ACCTTCATTTGCGCTTAATG+AGG - chr4_1:37676955-37676974 Msa0546300:intron 40.0%
TCCTCATTAAGCGCAAATGA+AGG + chr4_1:37676959-37676978 None:intergenic 40.0%
CGCTTAATGAGGATCATCTT+AGG - chr4_1:37676966-37676985 Msa0546300:intron 40.0%
GTAGTGTTTACCGTTGAGTT+TGG - chr4_1:37677290-37677309 Msa0546300:intron 40.0%
CAAAGGCAAAGGGTTGTATT+TGG + chr4_1:37677467-37677486 None:intergenic 40.0%
CTGTATCTCTTCAAAGGCAA+AGG + chr4_1:37677478-37677497 None:intergenic 40.0%
! TTTCTGATTGAAGGCGTGTT+CGG + chr4_1:37677566-37677585 None:intergenic 40.0%
CGCCTTCAATCAGAAATGTT+TGG - chr4_1:37677570-37677589 Msa0546300:CDS 40.0%
TCCCATTTAGATCTGAATGG+TGG + chr4_1:37677727-37677746 None:intergenic 40.0%
TTCCTCACAAGGTAAACACA+CGG + chr4_1:37677763-37677782 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr4_1:37678033-37678052 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr4_1:37678032-37678051 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+TGG - chr4_1:37678033-37678052 Msa0546300:intron 40.0%
CAGAAGAAAGATACACCATC+CGG + chr4_1:37678051-37678070 None:intergenic 40.0%
! ATTTGTTTGCTTGCTGCTGT+AGG - chr4_1:37678131-37678150 Msa0546300:intron 40.0%
ACTTCAGTAGTTCATGTAGC+TGG + chr4_1:37678213-37678232 None:intergenic 40.0%
CAACAAGCAAACACTGCAAA+AGG - chr4_1:37678349-37678368 Msa0546300:intron 40.0%
TGTCTTCTCGTGAATGTCAT+TGG + chr4_1:37678943-37678962 None:intergenic 40.0%
!!! CTTTTTCAGAGGTGGATTGT+TGG - chr4_1:37678965-37678984 Msa0546300:CDS 40.0%
! TCCCACGTAATAATGCCTTT+TGG - chr4_1:37679005-37679024 Msa0546300:CDS 40.0%
!! GCCAAAAGGCATTATTACGT+GGG + chr4_1:37679009-37679028 None:intergenic 40.0%
!! TTCTCAAAAATGATGGTGGG+TGG - chr4_1:37679044-37679063 Msa0546300:CDS 40.0%
CTTTGGTCCCACTTGTAAAA+AGG + chr4_1:37679316-37679335 None:intergenic 40.0%
TCTCTTTCCTAGGCAACTAA+CGG + chr4_1:37679415-37679434 None:intergenic 40.0%
TTAGTTGCCTAGGAAAGAGA+GGG - chr4_1:37679415-37679434 Msa0546300:intron 40.0%
ATAGTTGCTCGTTCCTTAAC+GGG - chr4_1:37679445-37679464 Msa0546300:intron 40.0%
GAAAAAATGAGTCCCCGTTA+AGG + chr4_1:37679461-37679480 None:intergenic 40.0%
! GGAGTGGTACTTGTTAAGTA+AGG - chr4_1:37679507-37679526 Msa0546300:CDS 40.0%
GGAAATGTTAGGTGGCATTT+AGG - chr4_1:37679659-37679678 Msa0546300:intron 40.0%
CAAACAACTTTGCCATAGTG+GGG + chr4_1:37679704-37679723 None:intergenic 40.0%
!! TTGGTAATGTTGGTTGTCGT+TGG + chr4_1:37679834-37679853 None:intergenic 40.0%
GAGATGAATCGAATCTCTGA+CGG + chr4_1:37680065-37680084 None:intergenic 40.0%
ACGCATTTAGCTGAATCGAT+TGG - chr4_1:37680251-37680270 Msa0546300:five_prime_UTR 40.0%
ATATCCTCTGTCCTTGACAC+TGG - chr4_1:37672701-37672720 Msa0546300:intron 45.0%
TATATACGCTGCCAGTGTCA+AGG + chr4_1:37672715-37672734 None:intergenic 45.0%
CCCATTCTTCTGATCCATCT+TGG + chr4_1:37673001-37673020 None:intergenic 45.0%
!! CAGAAGCACACATGTTTTGG+TGG - chr4_1:37673160-37673179 Msa0546300:intron 45.0%
AGCCATGGCCAATAATTCTC+TGG - chr4_1:37673220-37673239 Msa0546300:intron 45.0%
GCCAATAATTCTCTGGTTGC+AGG - chr4_1:37673227-37673246 Msa0546300:intron 45.0%
CCCTGCAACCAGAGAATTAT+TGG + chr4_1:37673231-37673250 None:intergenic 45.0%
ATAATTCTCTGGTTGCAGGG+TGG - chr4_1:37673231-37673250 Msa0546300:intron 45.0%
! GACATGTGTCGGTACTTCAA+AGG + chr4_1:37673299-37673318 None:intergenic 45.0%
! TCTTCAGGTTAGATGTGTCC+CGG + chr4_1:37673401-37673420 None:intergenic 45.0%
! GATAGGGTGCTTCAAGTGTT+GGG - chr4_1:37673475-37673494 Msa0546300:intron 45.0%
TGAATTCCTTGGCTTCAAGC+TGG + chr4_1:37673535-37673554 None:intergenic 45.0%
GACTCTGCCACAATGTACAA+AGG + chr4_1:37674113-37674132 None:intergenic 45.0%
! ATTGTGGCAGAGTCTTATGG+TGG - chr4_1:37674119-37674138 Msa0546300:intron 45.0%
!! GGCAAATTTGCTGTCACTCT+TGG - chr4_1:37674140-37674159 Msa0546300:intron 45.0%
TATGAAGCATGGACACTCCT+CGG + chr4_1:37674435-37674454 None:intergenic 45.0%
CTTGAGACGTCTTTGAGTAG+AGG + chr4_1:37674859-37674878 None:intergenic 45.0%
TGGAGATCAGTATTGCTCAG+AGG - chr4_1:37675015-37675034 Msa0546300:intron 45.0%
GACATATCAGCAATGGCAGT+AGG - chr4_1:37675418-37675437 Msa0546300:intron 45.0%
AGAAGAAGACCCTGTCCTTA+GGG + chr4_1:37675491-37675510 None:intergenic 45.0%
CCAAGTTTATCATCACCACC+AGG + chr4_1:37675514-37675533 None:intergenic 45.0%
! CCTGGTGGTGATGATAAACT+TGG - chr4_1:37675511-37675530 Msa0546300:intron 45.0%
GTTGATCAGCTACTGACCAA+GGG - chr4_1:37675864-37675883 Msa0546300:intron 45.0%
!! GATAGTAACATTGGCTCCCT+TGG + chr4_1:37675883-37675902 None:intergenic 45.0%
TACCAAAGGGACTGAAGCTT+GGG - chr4_1:37676180-37676199 Msa0546300:intron 45.0%
CCGGATAGACAAGTCAACAT+TGG - chr4_1:37676456-37676475 Msa0546300:CDS 45.0%
TCTTTATTCCGTAGGTGGGA+AGG - chr4_1:37676511-37676530 Msa0546300:intron 45.0%
CTTTATTCCGTAGGTGGGAA+GGG - chr4_1:37676512-37676531 Msa0546300:intron 45.0%
!! TTTTTAGCCCTTCCCACCTA+CGG + chr4_1:37676522-37676541 None:intergenic 45.0%
TTGTTACCACCACAGTAGAG+GGG + chr4_1:37676568-37676587 None:intergenic 45.0%
GGTGGTAACAAATCGACCAA+AGG - chr4_1:37676577-37676596 Msa0546300:intron 45.0%
TCTATGTGAGCAAGAAGGGT+CGG - chr4_1:37677085-37677104 Msa0546300:intron 45.0%
ATTGCTCACGCCAAACTCAA+CGG + chr4_1:37677303-37677322 None:intergenic 45.0%
ACAAGATGATGTACACCCTC+CGG - chr4_1:37677902-37677921 Msa0546300:intron 45.0%
!! GGCCAAAAGGCATTATTACG+TGG + chr4_1:37679010-37679029 None:intergenic 45.0%
!! TGTCCTAAGAGCATCCACAA+TGG - chr4_1:37679100-37679119 Msa0546300:intron 45.0%
CTACCATTGTGGATGCTCTT+AGG + chr4_1:37679106-37679125 None:intergenic 45.0%
GTTAGTTGCCTAGGAAAGAG+AGG - chr4_1:37679414-37679433 Msa0546300:intron 45.0%
ATAAGGACCCTCTCTTTCCT+AGG + chr4_1:37679425-37679444 None:intergenic 45.0%
TAGTTGCTCGTTCCTTAACG+GGG - chr4_1:37679446-37679465 Msa0546300:intron 45.0%
CTCCAATGAAGGGTCCTTAA+CGG - chr4_1:37679484-37679503 Msa0546300:CDS 45.0%
TCCAATGAAGGGTCCTTAAC+GGG - chr4_1:37679485-37679504 Msa0546300:CDS 45.0%
TTAAGTAAGGACCCCCTCAT+TGG - chr4_1:37679520-37679539 Msa0546300:CDS 45.0%
! TTAGAGCATCTCCAATGAGG+GGG + chr4_1:37679534-37679553 None:intergenic 45.0%
! CTTAGAGCATCTCCAATGAG+GGG + chr4_1:37679535-37679554 None:intergenic 45.0%
! CCTTAGAGCATCTCCAATGA+GGG + chr4_1:37679536-37679555 None:intergenic 45.0%
ATGTTAGGTGGCATTTAGGG+TGG - chr4_1:37679663-37679682 Msa0546300:intron 45.0%
! TGTTAGGTGGCATTTAGGGT+GGG - chr4_1:37679664-37679683 Msa0546300:intron 45.0%
AGGGAAAGAATTCCCCACTA+TGG - chr4_1:37679689-37679708 Msa0546300:intron 45.0%
!! GTTGTCGTTGGAGGTTGATA+AGG + chr4_1:37679822-37679841 None:intergenic 45.0%
! GTAATGTTGGTTGTCGTTGG+AGG + chr4_1:37679831-37679850 None:intergenic 45.0%
CAGCAATGGAAAATCTGGGT+TGG + chr4_1:37679853-37679872 None:intergenic 45.0%
CCGACAGCAATGGAAAATCT+GGG + chr4_1:37679857-37679876 None:intergenic 45.0%
! CCCAGATTTTCCATTGCTGT+CGG - chr4_1:37679854-37679873 Msa0546300:CDS 45.0%
TCCGACAGCAATGGAAAATC+TGG + chr4_1:37679858-37679877 None:intergenic 45.0%
!! AAAAAAATTTAAATCTTTAA+GGG + chr4_1:37678570-37678589 None:intergenic 5.0%
!! AAAAAAAATTTAAATCTTTA+AGG + chr4_1:37678571-37678590 None:intergenic 5.0%
!! TTTAATAAAATTACTTATTA+AGG - chr4_1:37679184-37679203 Msa0546300:intron 5.0%
GTTAGTGTGTGCGTGTGAGT+AGG + chr4_1:37672645-37672664 None:intergenic 50.0%
CACCGATGTGTATCAGACAC+CGG - chr4_1:37673379-37673398 Msa0546300:intron 50.0%
ACCGATGTGTATCAGACACC+GGG - chr4_1:37673380-37673399 Msa0546300:intron 50.0%
TCCCGGTGTCTGATACACAT+CGG + chr4_1:37673384-37673403 None:intergenic 50.0%
! GGATAGGGTGCTTCAAGTGT+TGG - chr4_1:37673474-37673493 Msa0546300:intron 50.0%
!! GGTGCTTCAAGTGTTGGGAT+TGG - chr4_1:37673480-37673499 Msa0546300:intron 50.0%
GGCTTCAAGCTGGTATCCAA+AGG + chr4_1:37673525-37673544 None:intergenic 50.0%
TGGATACCAGCTTGAAGCCA+AGG - chr4_1:37673526-37673545 Msa0546300:intron 50.0%
CAGGACAATCCAGTTGGAAC+AGG - chr4_1:37673972-37673991 Msa0546300:intron 50.0%
GATTAGGTGTGTCCCAGTGT+CGG + chr4_1:37674413-37674432 None:intergenic 50.0%
GTGTGGCATTAGGAGACAGT+TGG - chr4_1:37674597-37674616 Msa0546300:intron 50.0%
GTTGCAATGCGGTTTGTCGA+CGG - chr4_1:37674772-37674791 Msa0546300:intron 50.0%
GTGTCTGTGTCTGTGTGTCA+GGG - chr4_1:37675318-37675337 Msa0546300:intron 50.0%
GAGAAGAAGACCCTGTCCTT+AGG + chr4_1:37675492-37675511 None:intergenic 50.0%
GGTTGATCAGCTACTGACCA+AGG - chr4_1:37675863-37675882 Msa0546300:intron 50.0%
CTACCAAAGGGACTGAAGCT+TGG - chr4_1:37676179-37676198 Msa0546300:intron 50.0%
AACCCAAGCTTCAGTCCCTT+TGG + chr4_1:37676185-37676204 None:intergenic 50.0%
AAGGGACTGAAGCTTGGGTT+AGG - chr4_1:37676185-37676204 Msa0546300:intron 50.0%
AGAAGGGTCGGTCTAACACA+AGG - chr4_1:37677097-37677116 Msa0546300:intron 50.0%
GAAGGGTCGGTCTAACACAA+GGG - chr4_1:37677098-37677117 Msa0546300:intron 50.0%
AAGGGTCGGTCTAACACAAG+GGG - chr4_1:37677099-37677118 Msa0546300:intron 50.0%
CAAGGTAAACACACGGTCAC+TGG + chr4_1:37677756-37677775 None:intergenic 50.0%
GACCGTGTGTTTACCTTGTG+AGG - chr4_1:37677758-37677777 Msa0546300:intron 50.0%
CGTTAAGGACCCTTCATTGG+AGG + chr4_1:37679486-37679505 None:intergenic 50.0%
CCAATGAAGGGTCCTTAACG+GGG - chr4_1:37679486-37679505 Msa0546300:CDS 50.0%
ACAAGTACCACTCCCCGTTA+AGG + chr4_1:37679501-37679520 None:intergenic 50.0%
CCCTCATTGGAGATGCTCTA+AGG - chr4_1:37679533-37679552 Msa0546300:CDS 50.0%
! GCCTTAGAGCATCTCCAATG+AGG + chr4_1:37679537-37679556 None:intergenic 50.0%
ACAGACGTTTCCGACAGCAA+TGG + chr4_1:37679867-37679886 None:intergenic 50.0%
!! CTTTCATGTTGAGGCACCGA+AGG + chr4_1:37679903-37679922 None:intergenic 50.0%
GAGTTTCCGGTCATCTTCTC+CGG + chr4_1:37680357-37680376 None:intergenic 50.0%
GAAGATGACCGGAAACTCAC+CGG - chr4_1:37680359-37680378 Msa0546300:five_prime_UTR 50.0%
GTCAGTGTCCGTATCGTGTC+CGG + chr4_1:37674316-37674335 None:intergenic 55.0%
ACTGGGACACACCTAATCCG+AGG - chr4_1:37674415-37674434 Msa0546300:intron 55.0%
GCATGGACACTCCTCGGATT+AGG + chr4_1:37674429-37674448 None:intergenic 55.0%
GGTGTCTGTGTCTGTGTGTC+AGG - chr4_1:37675317-37675336 Msa0546300:intron 55.0%
TTCTTGGTCGATGCGGGAAG+TGG - chr4_1:37675391-37675410 Msa0546300:intron 55.0%
AGGACAGGGTCTTCTTCTCC+TGG - chr4_1:37675493-37675512 Msa0546300:intron 55.0%
ACAGGGTCTTCTTCTCCTGG+TGG - chr4_1:37675496-37675515 Msa0546300:intron 55.0%
GACAGAACACCCCTCTACTG+TGG - chr4_1:37676556-37676575 Msa0546300:intron 55.0%
AGAACACCCCTCTACTGTGG+TGG - chr4_1:37676559-37676578 Msa0546300:intron 55.0%
GTGGGATCCGTTAGTTGCCT+AGG - chr4_1:37679405-37679424 Msa0546300:intron 55.0%
CCCCGTTAAGGACCCTTCAT+TGG + chr4_1:37679489-37679508 None:intergenic 55.0%
! GTGGCATTTAGGGTGGGTGA+GGG - chr4_1:37679670-37679689 Msa0546300:intron 55.0%
CACAAGCCGGAGAAGATGAC+CGG - chr4_1:37680348-37680367 Msa0546300:five_prime_UTR 55.0%
GCTGCCAGTGTCAAGGACAG+AGG + chr4_1:37672708-37672727 None:intergenic 60.0%
AAGCGCACAGACACAGACGC+CGG - chr4_1:37674294-37674313 Msa0546300:intron 60.0%
CACAGACGCCGGACACGATA+CGG - chr4_1:37674305-37674324 Msa0546300:intron 60.0%
TCGGTACACGTGTCCGACAC+TGG - chr4_1:37674397-37674416 Msa0546300:intron 60.0%
CGGTACACGTGTCCGACACT+GGG - chr4_1:37674398-37674417 Msa0546300:intron 60.0%
GAAGGGTCCTTAACGGGGAG+TGG - chr4_1:37679491-37679510 Msa0546300:CDS 60.0%
! GGTGGCATTTAGGGTGGGTG+AGG - chr4_1:37679669-37679688 Msa0546300:intron 60.0%
GATGACCGGAAACTCACCGG+TGG - chr4_1:37680362-37680381 Msa0546300:five_prime_UTR 60.0%
AGCCACCACCGGTGAGTTTC+CGG + chr4_1:37680370-37680389 None:intergenic 60.0%
GACCGGAAACTCACCGGTGG+TGG - chr4_1:37680365-37680384 Msa0546300:five_prime_UTR 65.0%
! ACTCACCGGTGGTGGCTCTC+CGG - chr4_1:37680373-37680392 Msa0546300:five_prime_UTR 65.0%
CGGACACTGACACGCCGACG+CGG - chr4_1:37674325-37674344 Msa0546300:intron 70.0%
CATCGCCGGAGAGCCACCAC+CGG + chr4_1:37680381-37680400 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 37672636 37680412 37672636 ID=Msa0546300;Name=Msa0546300
chr4_1 mRNA 37672636 37680412 37672636 ID=Msa0546300-mRNA-1;Parent=Msa0546300;Name=Msa0546300-mRNA-1;_AED=0.18;_eAED=0.18;_QI=279|0.91|0.92|0.92|1|1|13|0|459
chr4_1 exon 37672636 37672707 37672636 ID=Msa0546300-mRNA-1:exon:9671;Parent=Msa0546300-mRNA-1
chr4_1 exon 37676391 37676523 37676391 ID=Msa0546300-mRNA-1:exon:9670;Parent=Msa0546300-mRNA-1
chr4_1 exon 37676833 37676885 37676833 ID=Msa0546300-mRNA-1:exon:9669;Parent=Msa0546300-mRNA-1
chr4_1 exon 37677134 37677184 37677134 ID=Msa0546300-mRNA-1:exon:9668;Parent=Msa0546300-mRNA-1
chr4_1 exon 37677307 37677376 37677307 ID=Msa0546300-mRNA-1:exon:9667;Parent=Msa0546300-mRNA-1
chr4_1 exon 37677458 37677669 37677458 ID=Msa0546300-mRNA-1:exon:9666;Parent=Msa0546300-mRNA-1
chr4_1 exon 37677918 37678023 37677918 ID=Msa0546300-mRNA-1:exon:9665;Parent=Msa0546300-mRNA-1
chr4_1 exon 37678137 37678204 37678137 ID=Msa0546300-mRNA-1:exon:9664;Parent=Msa0546300-mRNA-1
chr4_1 exon 37678408 37678451 37678408 ID=Msa0546300-mRNA-1:exon:9663;Parent=Msa0546300-mRNA-1
chr4_1 exon 37678833 37679073 37678833 ID=Msa0546300-mRNA-1:exon:9662;Parent=Msa0546300-mRNA-1
chr4_1 exon 37679461 37679568 37679461 ID=Msa0546300-mRNA-1:exon:9661;Parent=Msa0546300-mRNA-1
chr4_1 exon 37679791 37679885 37679791 ID=Msa0546300-mRNA-1:exon:9660;Parent=Msa0546300-mRNA-1
chr4_1 exon 37680007 37680412 37680007 ID=Msa0546300-mRNA-1:exon:9659;Parent=Msa0546300-mRNA-1
chr4_1 five_prime_UTR 37680134 37680412 37680134 ID=Msa0546300-mRNA-1:five_prime_utr;Parent=Msa0546300-mRNA-1
chr4_1 CDS 37680007 37680133 37680007 ID=Msa0546300-mRNA-1:cds;Parent=Msa0546300-mRNA-1
chr4_1 CDS 37679791 37679885 37679791 ID=Msa0546300-mRNA-1:cds;Parent=Msa0546300-mRNA-1
chr4_1 CDS 37679461 37679568 37679461 ID=Msa0546300-mRNA-1:cds;Parent=Msa0546300-mRNA-1
chr4_1 CDS 37678833 37679073 37678833 ID=Msa0546300-mRNA-1:cds;Parent=Msa0546300-mRNA-1
chr4_1 CDS 37678408 37678451 37678408 ID=Msa0546300-mRNA-1:cds;Parent=Msa0546300-mRNA-1
chr4_1 CDS 37678137 37678204 37678137 ID=Msa0546300-mRNA-1:cds;Parent=Msa0546300-mRNA-1
chr4_1 CDS 37677918 37678023 37677918 ID=Msa0546300-mRNA-1:cds;Parent=Msa0546300-mRNA-1
chr4_1 CDS 37677458 37677669 37677458 ID=Msa0546300-mRNA-1:cds;Parent=Msa0546300-mRNA-1
chr4_1 CDS 37677307 37677376 37677307 ID=Msa0546300-mRNA-1:cds;Parent=Msa0546300-mRNA-1
chr4_1 CDS 37677134 37677184 37677134 ID=Msa0546300-mRNA-1:cds;Parent=Msa0546300-mRNA-1
chr4_1 CDS 37676833 37676885 37676833 ID=Msa0546300-mRNA-1:cds;Parent=Msa0546300-mRNA-1
chr4_1 CDS 37676391 37676523 37676391 ID=Msa0546300-mRNA-1:cds;Parent=Msa0546300-mRNA-1
chr4_1 CDS 37672636 37672707 37672636 ID=Msa0546300-mRNA-1:cds;Parent=Msa0546300-mRNA-1
Gene Sequence

>Msa0546300

ATGGAAAAACTTCTTCCTTTTCCCATCGTTCTTCTCTTCCTTTCATCATTTTTTCTTCTACAAAACGTTACAGCTTTCAAAAACCAAGATGGATCAGAAGAATGGGGTTATGTTCAAGTCAGACCTAAAGCACACATGTTTTGGTGGCATTATAAAAGTCCATACAGAGTGGAAGATTCTTCAAAGCCATGGCCAATAATTCTCTGGTTGCAGGGTGGCCCTGGTGCTTCAAGTGTTGGGATTGGAAATTTTGAAGAGGTTGGACCTTTGGATACCAGCTTGAAGCCAAGGAATTCAACATGGTTGTTAAAAGGAGATCTCTTGTTTGTGGACAATCCAGTTGGAACAGGATACAGTTTTGTGGAGGATGAGAAACTTTTTGTGAAAACAGATGATGAAGCAGCCACAGATTTGACAACATTGTTGATTAAATTATTTAATAATGATGAAAAACTTCAAAAGAGTCCTTTGTACATTGTGGCAGAGTCTTATGGTGGCAAATTTGCTGTCACTCTTGGATTATCTGCTCTTAAAGCTATTGAAGACAAGAAATTGAAACTTACACTTGGAGGTGTGGCATTAGGAGACAGTTGGATCTCACCAGAAGATTTTGTGTTGTCATGGGGTCCTCTACTCAAAGACGTCTCAAGACTCGATGATAATGGACTGGAAAAATCAAACAGTATTGCTCAGAGGATCAAGAAGCAACTTGAAGATGGTAAATTTAATGATGCAACTGACTCATGGAGTGAACTTGAGAATCAGATTTCAATAAGCAGCAACAATGTGGATTTTTACAATTTCTTGGTCGATGCGGGAAGTGGTTCAGACATATCAGCAATGGCAGTAGGATTAATAAAAGAAAGATCAAGGAAGAGGTACTCCAAGTATCTTACTTCCCTAAGGACAGGGTCTTCTTCTCCTGGTGGTGATGATAAACTTGGCCCTTTACTAAATGGTGTCATAAAGAAGAAGTTAAAAATCATCCCTGAGAATGTCACATGGGGAGGGCAGTCCAATGAAGTTTTCACTTATCTTGAAGGTGATTTTATGAAGCCAAGAATAGATGAGGTTGATCAGCTACTGACCAAGGGAGCCAATGTTACTATCTACAATGGACAAGTTGATCTAATTTGTGCTACCAAAGGGACTGAAGCTTGGGTTAGGAAACTCAAGTGGGAAGGGCTAAAAAGTTTCTTGGGGAAAGACAGAACACCCCTCTACTGTGGTGGTAACAAATCGACCAAAGGATTTTTCAAGTCATACAAAAACCTACAATTCTATTGGATTCTTGGAGCTGGTCATTTTAAGAAAACACAAGCCGGAGAAGATGACCGGAAACTCACCGGTGGTGGCTCTCCGGCGATGTGTTTAGAATGA
Protein sequence

>Msa0546300

MEKLLPFPIVLLFLSSFFLLQNVTAFKNQDGSEEWGYVQVRPKAHMFWWHYKSPYRVEDSSKPWPIILWLQGGPGASSVGIGNFEEVGPLDTSLKPRNSTWLLKGDLLFVDNPVGTGYSFVEDEKLFVKTDDEAATDLTTLLIKLFNNDEKLQKSPLYIVAESYGGKFAVTLGLSALKAIEDKKLKLTLGGVALGDSWISPEDFVLSWGPLLKDVSRLDDNGLEKSNSIAQRIKKQLEDGKFNDATDSWSELENQISISSNNVDFYNFLVDAGSGSDISAMAVGLIKERSRKRYSKYLTSLRTGSSSPGGDDKLGPLLNGVIKKKLKIIPENVTWGGQSNEVFTYLEGDFMKPRIDEVDQLLTKGANVTIYNGQVDLICATKGTEAWVRKLKWEGLKSFLGKDRTPLYCGGNKSTKGFFKSYKNLQFYWILGAGHFKKTQAGEDDRKLTGGGSPAMCLE*