AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1339440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1339440 MtrunA17_Chr7g0238171 63.842 531 98 7 1 447 1 521 0.0 629
Msa1339440 MtrunA17_Chr7g0238191 73.523 457 95 8 1 447 1 441 0.0 611
Msa1339440 MtrunA17_Chr7g0238241 68.856 472 117 5 1 446 1 468 0.0 605
Msa1339440 MtrunA17_Chr7g0238141 71.367 461 106 7 1 447 1 449 0.0 588
Msa1339440 MtrunA17_Chr7g0238231 61.212 495 141 7 1 447 1 492 0.0 566
Msa1339440 MtrunA17_Chr7g0238511 61.099 455 152 8 1 447 1 438 0.0 531
Msa1339440 MtrunA17_Chr7g0238101 59.175 485 154 9 1 446 1 480 0.0 527
Msa1339440 MtrunA17_Chr7g0238111 58.388 459 153 8 1 447 1 433 1.32e-174 496
Msa1339440 MtrunA17_Chr7g0238131 61.995 421 133 6 50 447 1 417 1.54e-172 490
Msa1339440 MtrunA17_Chr7g0238251 53.346 508 160 11 1 447 1 492 8.40e-151 437
Msa1339440 MtrunA17_Chr7g0238181 58.418 392 112 6 71 447 1 356 4.45e-148 426
Msa1339440 MtrunA17_Chr7g0238151 70.155 258 72 3 2 257 1 255 2.33e-118 346
Msa1339440 MtrunA17_Chr7g0232531 67.547 265 73 7 1 257 1 260 1.37e-103 308
Msa1339440 MtrunA17_Chr7g0238291 63.985 261 88 5 1 259 1 257 7.31e-97 291
Msa1339440 MtrunA17_Chr7g0238281 78.212 179 39 0 265 443 3 181 3.95e-90 271
Msa1339440 MtrunA17_Chr7g0238201 74.586 181 46 0 1 181 1 181 2.56e-89 269
Msa1339440 MtrunA17_Chr7g0238071 72.251 191 50 1 1 191 1 188 8.74e-89 269
Msa1339440 MtrunA17_Chr7g0238031 65.957 235 74 4 2 235 1 230 1.20e-88 280
Msa1339440 MtrunA17_Chr8g0354591 38.395 461 215 12 26 443 24 458 1.47e-85 269
Msa1339440 MtrunA17_Chr7g0238051 49.669 302 94 5 201 447 69 367 2.16e-83 261
Msa1339440 MtrunA17_Chr8g0352511 36.147 462 252 9 16 443 19 471 3.62e-83 263
Msa1339440 MtrunA17_Chr7g0238091 61.765 204 74 2 248 447 18 221 1.02e-78 243
Msa1339440 MtrunA17_Chr8g0354581 35.193 466 238 10 24 445 22 467 1.20e-71 233
Msa1339440 MtrunA17_Chr7g0238081 60.000 180 63 2 265 443 2 173 1.02e-69 219
Msa1339440 MtrunA17_Chr7g0232521 61.538 195 73 2 245 438 20 213 6.85e-69 218
Msa1339440 MtrunA17_Chr7g0238211 63.043 184 67 1 265 447 2 185 8.15e-69 217
Msa1339440 MtrunA17_Chr7g0238021 60.317 189 62 4 71 251 1 184 6.19e-68 215
Msa1339440 MtrunA17_Chr8g0352491 43.478 184 88 3 276 443 2 185 1.92e-41 145
Msa1339440 MtrunA17_Chr1g0170061 45.771 201 80 7 1 199 1 174 8.51e-41 146
Msa1339440 MtrunA17_Chr8g0354621 48.649 148 62 2 310 443 5 152 9.21e-38 134
Msa1339440 MtrunA17_Chr5g0439641 27.064 436 243 13 45 442 49 447 8.46e-34 132
Msa1339440 MtrunA17_Chr5g0401791 27.883 477 277 17 6 444 81 528 9.06e-31 124
Msa1339440 MtrunA17_Chr8g0354611 39.759 166 83 4 26 183 24 180 4.25e-29 114
Msa1339440 MtrunA17_Chr5g0439721 28.029 421 247 14 43 442 47 432 8.13e-29 117
Msa1339440 MtrunA17_Chr8g0334971 26.859 417 251 13 45 434 44 433 3.30e-27 113
Msa1339440 MtrunA17_Chr5g0439681 37.989 179 101 6 268 442 136 308 7.30e-27 110
Msa1339440 MtrunA17_Chr8g0335061 26.471 408 263 13 45 434 44 432 1.13e-25 108
Msa1339440 MtrunA17_Chr8g0352501 42.446 139 63 4 49 179 7 136 2.74e-25 103
Msa1339440 MtrunA17_Chr8g0334911 27.979 386 211 12 45 399 45 394 1.48e-24 105
Msa1339440 MtrunA17_Chr8g0334951 27.225 382 221 13 45 399 46 397 3.86e-24 103
Msa1339440 MtrunA17_Chr3g0118601 25.056 443 297 15 16 444 30 451 1.04e-22 100
Msa1339440 MtrunA17_Chr8g0335071 24.558 452 296 15 7 432 18 450 4.86e-22 98.2
Msa1339440 MtrunA17_Chr5g0440401 35.260 173 105 4 273 443 48 215 8.94e-22 93.6
Msa1339440 MtrunA17_Chr2g0297831 25.727 447 279 17 11 439 50 461 1.01e-21 97.8
Msa1339440 MtrunA17_Chr7g0265891 25.296 423 257 16 43 443 66 451 1.49e-21 96.7
Msa1339440 MtrunA17_Chr8g0335021 24.769 432 265 14 45 439 44 452 3.37e-20 92.8
Msa1339440 MtrunA17_Chr8g0335011 25.551 454 263 16 45 437 53 492 1.11e-19 91.3
Msa1339440 MtrunA17_Chr6g0452501 24.229 454 287 12 2 442 1 410 1.11e-18 87.8
Msa1339440 MtrunA17_Chr6g0452591 26.650 409 249 14 45 442 72 440 1.14e-18 88.2
Msa1339440 MtrunA17_Chr6g0452551 25.393 445 285 15 2 439 1 405 1.29e-18 87.4
Msa1339440 MtrunA17_Chr6g0452161 26.087 414 259 14 43 442 40 420 2.12e-17 84.0
Msa1339440 MtrunA17_Chr6g0452531 25.553 407 256 13 45 442 42 410 3.04e-17 83.6
Msa1339440 MtrunA17_Chr6g0452611 26.500 400 254 12 45 439 41 405 9.35e-17 82.0
Msa1339440 MtrunA17_Chr2g0296801 26.351 296 178 8 160 447 90 353 2.84e-16 80.1
Msa1339440 MtrunA17_Chr2g0297821 29.121 182 119 6 270 444 5 183 1.12e-15 75.1
Msa1339440 MtrunA17_Chr6g0452561 24.762 420 264 17 45 447 42 426 2.36e-15 77.8
Msa1339440 MtrunA17_Chr6g0457371 24.229 454 282 14 2 442 1 405 2.95e-15 77.4
Msa1339440 MtrunA17_Chr4g0002901 31.548 168 103 5 288 447 392 555 6.33e-12 67.8
Msa1339440 MtrunA17_Chr8g0354871 29.319 191 115 6 265 442 198 381 7.93e-12 66.6
Msa1339440 MtrunA17_Chr6g0452571 26.667 285 182 10 163 442 86 348 3.56e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1339440 AT3G50120.1 26.866 469 293 15 6 447 83 528 6.53e-31 125
Msa1339440 AT5G11290.2 25.735 408 255 9 45 442 50 419 6.83e-30 120
Msa1339440 AT3G50170.1 26.124 467 297 14 6 447 93 536 1.54e-29 121
Msa1339440 AT3G50180.1 26.180 466 276 16 6 444 158 582 5.31e-29 120
Msa1339440 AT3G50150.1 26.126 444 253 16 40 447 102 506 1.29e-27 115
Msa1339440 AT4G31980.1 26.329 414 243 11 45 442 310 677 7.94e-27 114
Msa1339440 AT3G50140.1 26.941 438 254 16 45 447 130 536 1.11e-26 113
Msa1339440 AT3G50160.1 26.230 427 252 12 40 447 116 498 1.80e-26 112
Msa1339440 AT3G50130.1 28.051 467 279 19 6 443 119 557 1.74e-25 109
Msa1339440 AT5G22540.1 26.353 425 252 13 43 444 46 432 2.59e-25 108
Msa1339440 AT3G47200.1 26.651 424 262 15 43 444 61 457 5.45e-23 101
Msa1339440 AT3G47200.2 26.651 424 262 15 43 444 61 457 5.45e-23 101
Msa1339440 AT3G44710.1 24.295 461 261 14 45 444 65 498 8.37e-23 101
Msa1339440 AT5G11290.1 25.000 384 246 9 66 442 2 350 9.83e-22 96.7
Msa1339440 AT2G36430.1 24.941 421 265 11 42 445 59 445 1.13e-21 97.4
Msa1339440 AT5G22550.2 25.991 454 256 19 43 444 59 484 1.37e-21 97.4
Msa1339440 AT3G47250.3 24.651 430 265 19 43 444 76 474 1.64e-20 94.4
Msa1339440 AT3G47250.2 24.651 430 265 19 43 444 76 474 1.64e-20 94.4
Msa1339440 AT3G47250.1 24.651 430 265 19 43 444 76 474 1.64e-20 94.4
Msa1339440 AT1G67150.4 25.561 446 270 16 23 447 3 407 3.80e-17 83.6
Msa1339440 AT1G67150.1 25.561 446 270 16 23 447 3 407 3.80e-17 83.6
Msa1339440 AT2G28580.6 26.457 446 269 20 23 442 35 447 3.91e-17 84.0
Msa1339440 AT2G28580.1 26.457 446 269 20 23 442 103 515 4.39e-17 84.0
Msa1339440 AT2G28580.2 26.457 446 269 20 23 442 117 529 4.91e-17 84.0
Msa1339440 AT1G67150.2 25.223 448 273 16 23 447 3 411 3.45e-16 80.5
Msa1339440 AT2G28580.5 24.533 428 283 14 23 442 103 498 9.64e-16 79.7
Msa1339440 AT2G28580.4 24.122 427 286 13 23 442 117 512 1.28e-15 79.3
Msa1339440 AT2G44930.1 23.636 440 249 16 45 442 101 495 2.42e-15 78.6
Msa1339440 AT3G60470.1 30.058 173 112 4 273 442 368 534 3.32e-14 75.1
Msa1339440 AT1G67150.3 31.638 177 114 4 273 447 193 364 5.24e-14 73.6
Msa1339440 AT3G47210.1 24.808 391 208 11 45 399 110 450 4.26e-13 71.6

Find 99 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGCAGAAAGATACCAAATT+TGG 0.188370 tig0003267:+85224 Msa1339440:CDS
TTGTTCTTACGTATCTTTAA+TGG 0.188877 tig0003267:+86467 Msa1339440:CDS
CTATGCTCTCCTCCTCCTTT+TGG 0.224289 tig0003267:-85777 None:intergenic
AATTCCTCGAACATCATTAT+TGG 0.238834 tig0003267:+85709 Msa1339440:CDS
TTGTAGTACTTCCCCAAATT+TGG 0.241897 tig0003267:-85237 None:intergenic
TATGGCATTCATCACTTCTT+TGG 0.246356 tig0003267:+86842 Msa1339440:three_prime_UTR
CACTTCTTTGGATTCTTAAT+AGG 0.249526 tig0003267:+86854 Msa1339440:three_prime_UTR
CTCAATTCCTTCACATCTTC+AGG 0.253403 tig0003267:-86507 None:intergenic
TATCTTGGGTCGTGAACTTT+CGG 0.259672 tig0003267:-85184 None:intergenic
ATCTTGGGTCGTGAACTTTC+GGG 0.268704 tig0003267:-85183 None:intergenic
AAAATGCGGATTATATATTA+TGG 0.276553 tig0003267:-85040 None:intergenic
GGCTGATCAACTTGTTCTTC+TGG 0.284206 tig0003267:+85581 Msa1339440:CDS
TTTCATTCAGACATTGTTTA+CGG 0.306148 tig0003267:+86764 Msa1339440:CDS
GTGCCCTGGGTCGCCACGCC+TGG 0.316731 tig0003267:-85547 None:intergenic
CGCAGAAAGATACCAAATTT+GGG 0.320288 tig0003267:+85225 Msa1339440:CDS
TCAAAGTCGTTCTCAAAATC+TGG 0.322832 tig0003267:-86441 None:intergenic
GTGAAGGAATTGAGATCAAA+AGG 0.357359 tig0003267:+86516 Msa1339440:CDS
TCAACATATTTGTCGATGTT+AGG 0.359936 tig0003267:-86609 None:intergenic
CCCAGGGCACATGAATATTA+AGG 0.368505 tig0003267:+85560 Msa1339440:CDS
TCATTCATTCAATATACTAA+TGG 0.369947 tig0003267:-85104 None:intergenic
AGATCTACGTGTTACTCTAT+TGG 0.377217 tig0003267:+87021 Msa1339440:three_prime_UTR
ATTCCTCGAACATCATTATT+GGG 0.379099 tig0003267:+85710 Msa1339440:CDS
CGAAAGTCTCTTGAAGGCTT+TGG 0.387051 tig0003267:+85453 Msa1339440:CDS
GACACATCTCATATGCTATC+AGG 0.391502 tig0003267:-86419 None:intergenic
AAAGCCAGGCGTGGCGACCC+AGG 0.399801 tig0003267:+85543 Msa1339440:CDS
ATGTTCTTTGCTGCATATCT+TGG 0.408587 tig0003267:+85518 Msa1339440:CDS
TGTTCTTCTGGTGGTGGATG+TGG 0.408757 tig0003267:+85593 Msa1339440:CDS
TCAACTCGAAAGTCTCTTGA+AGG 0.417411 tig0003267:+85447 Msa1339440:CDS
TTATCTGACTGTGACTCATC+TGG 0.421692 tig0003267:-85738 None:intergenic
AATGCTCACGTAATTTCTCT+TGG 0.436868 tig0003267:-86635 None:intergenic
GCCTTAATATTCATGTGCCC+TGG 0.438484 tig0003267:-85561 None:intergenic
GCACTTACTTCAACAATCCT+TGG 0.450547 tig0003267:+86697 Msa1339440:CDS
AAACCCAAGTTGGTGTCAAT+AGG 0.471075 tig0003267:+85258 Msa1339440:CDS
AGGTACCAAGTCTGTGCCTA+TGG 0.471665 tig0003267:-86589 None:intergenic
TCAACTTGTTCTTCTGGTGG+TGG 0.471970 tig0003267:+85587 Msa1339440:CDS
ATTGTATTGTACCTTGGACT+TGG 0.474271 tig0003267:-85883 None:intergenic
TCTATGCCCCTGTATGTAAT+CGG 0.474293 tig0003267:-86252 None:intergenic
AGCAGTAGGAATAAGACTTA+AGG 0.474792 tig0003267:+86284 Msa1339440:CDS
TCGTGGATGTTGTTCGTGGA+TGG 0.483877 tig0003267:+85495 Msa1339440:CDS
ATGAAGTACTTAAGCTATTG+TGG 0.484153 tig0003267:+85640 Msa1339440:CDS
AATAGCTTAAGTACTTCATA+AGG 0.489300 tig0003267:-85636 None:intergenic
AGGACCTATTGACACCAACT+TGG 0.498329 tig0003267:-85262 None:intergenic
AACTACCTCATCACTCCAAA+AGG 0.501190 tig0003267:-86550 None:intergenic
GACATTGTTTACGGTTCACT+CGG 0.504338 tig0003267:+86773 Msa1339440:CDS
GCCTATGGTATTGAAAAGAT+TGG 0.508761 tig0003267:-86574 None:intergenic
GAGAGAAGTACAAGCTTATG+TGG 0.510695 tig0003267:+85316 Msa1339440:CDS
TGCAGCAAGGAATGCAATAA+CGG 0.510768 tig0003267:-86721 None:intergenic
CAGAAGATCAAGAAGATGAG+TGG 0.517045 tig0003267:-85838 None:intergenic
CAATACCATAGGCACAGACT+TGG 0.518743 tig0003267:+86584 Msa1339440:CDS
TGAAGGAATTGAGATCAAAA+GGG 0.519868 tig0003267:+86517 Msa1339440:CDS
AGTGCAAGCCGATTACATAC+AGG 0.521092 tig0003267:+86244 Msa1339440:CDS
TGCATATCTTGGAGAAAGCC+AGG 0.525953 tig0003267:+85529 Msa1339440:CDS
TTCACTCGGCTTGCAAATGA+AGG 0.529124 tig0003267:+86787 Msa1339440:CDS
TCAGAGAAAACTATGTCTGT+TGG 0.532878 tig0003267:-86324 None:intergenic
AAGCCAGGCGTGGCGACCCA+GGG 0.533741 tig0003267:+85544 Msa1339440:CDS
CCTTAATATTCATGTGCCCT+GGG 0.534807 tig0003267:-85560 None:intergenic
AGATGAGTCACAGTCAGATA+AGG 0.537618 tig0003267:+85740 Msa1339440:CDS
TTAGTATATTGAATGAATGA+TGG 0.546218 tig0003267:+85107 Msa1339440:exon
TGCTAACATCGATAAACTGA+AGG 0.546708 tig0003267:+85398 Msa1339440:CDS
TAGAGGTGTGAGTGAGTGCA+TGG 0.547305 tig0003267:+84991 None:intergenic
ATACAAGACATGGATAGCGC+TGG 0.555421 tig0003267:+86668 Msa1339440:CDS
TATCAGGTTGAGTAAAGTAC+AGG 0.561957 tig0003267:-86403 None:intergenic
TTCACGACCCAAGATACAAA+AGG 0.563783 tig0003267:+85191 Msa1339440:CDS
GGACCTATTGACACCAACTT+GGG 0.564756 tig0003267:-85261 None:intergenic
TGATCAACTTGTTCTTCTGG+TGG 0.568104 tig0003267:+85584 Msa1339440:CDS
CGAAATTATGAATCAAAATG+CGG 0.571306 tig0003267:-85054 None:intergenic
TACAAGACATGGATAGCGCT+GGG 0.571680 tig0003267:+86669 Msa1339440:CDS
CCAAATTTGGTATCTTTCTG+CGG 0.571739 tig0003267:-85224 None:intergenic
GAGAAGGTCATGGTTCCAAA+AGG 0.576184 tig0003267:+85762 Msa1339440:CDS
ATAGAAGATCTAAAAGCAGT+AGG 0.576465 tig0003267:+86270 Msa1339440:CDS
CGACCATCCTGAAGATGTGA+AGG 0.581217 tig0003267:+86500 Msa1339440:CDS
AGGAATGCAATAACGGTCCA+AGG 0.588287 tig0003267:-86714 None:intergenic
TCTGAATGAAAGTAAGAGCA+AGG 0.592822 tig0003267:-86752 None:intergenic
TGGCCCAATAATGATGTTCG+AGG 0.593043 tig0003267:-85713 None:intergenic
GTCATGGTTCCAAAAGGAGG+AGG 0.598425 tig0003267:+85768 Msa1339440:CDS
GAAGTACTACAAACCCAAGT+TGG 0.601894 tig0003267:+85248 Msa1339440:CDS
ATTCCTTCACATCTTCAGGA+TGG 0.602075 tig0003267:-86503 None:intergenic
GTGCAAGCCGATTACATACA+GGG 0.603661 tig0003267:+86245 Msa1339440:CDS
GGCTTGCAAATGAAGGTGCA+TGG 0.611017 tig0003267:+86794 Msa1339440:exon
AAGGTCATGGTTCCAAAAGG+AGG 0.617980 tig0003267:+85765 Msa1339440:CDS
GCTGTCGTGGATGTTGTTCG+TGG 0.618355 tig0003267:+85491 Msa1339440:CDS
GCCTTGAAGAAAAGCTGTCG+TGG 0.621035 tig0003267:+85478 Msa1339440:CDS
GTCACAGTCAGATAAGGAGA+AGG 0.621365 tig0003267:+85746 Msa1339440:CDS
ACTTTAATAAATACAAGACA+TGG 0.623231 tig0003267:+86658 Msa1339440:CDS
AGAAGATCAAGAAGATGAGT+GGG 0.624508 tig0003267:-85837 None:intergenic
GTCAGATAAGGAGAAGGTCA+TGG 0.628406 tig0003267:+85752 Msa1339440:CDS
CCTCACTACATCCAAGTCCA+AGG 0.640385 tig0003267:+85872 Msa1339440:CDS
TGACTGTGACTCATCTGGTG+TGG 0.642386 tig0003267:-85733 None:intergenic
CCTTGGACTTGGATGTAGTG+AGG 0.643268 tig0003267:-85872 None:intergenic
CTGAATGAAAGTAAGAGCAA+GGG 0.649353 tig0003267:-86751 None:intergenic
AAACAACAAACTTAATCCAG+AGG 0.653888 tig0003267:+85356 Msa1339440:CDS
CAAGGGCAATAAATGCAGCA+AGG 0.656895 tig0003267:-86734 None:intergenic
AGAGAAGTACAAGCTTATGT+GGG 0.658614 tig0003267:+85317 Msa1339440:CDS
ATCTTGGAGAAAGCCAGGCG+TGG 0.668478 tig0003267:+85534 Msa1339440:CDS
GCAGAAAGATACCAAATTTG+GGG 0.671150 tig0003267:+85226 Msa1339440:CDS
GCTAACATCGATAAACTGAA+GGG 0.673500 tig0003267:+85399 Msa1339440:CDS
TGCATGGTTCGTTATGACAA+TGG 0.699148 tig0003267:+86810 Msa1339440:three_prime_UTR
TGCAAGCCGATTACATACAG+GGG 0.699538 tig0003267:+86246 Msa1339440:CDS
ACGACCCAAGATACAAAAGG+TGG 0.728720 tig0003267:+85194 Msa1339440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAAAATATTTTAAAAAGA+AGG - tig0003267:86156-86175 None:intergenic 10.0%
!!! TTTTTTAATGAATAAATTTC+AGG + tig0003267:86883-86902 Msa1339440:three_prime_UTR 10.0%
!!! GAAAAAATATTTTAAAAAGA+AGG - tig0003267:86156-86175 None:intergenic 10.0%
!!! TTTTTTAATGAATAAATTTC+AGG + tig0003267:86883-86902 Msa1339440:three_prime_UTR 10.0%
!!! AAGTTTTTCTTTAATAGTTT+GGG - tig0003267:85136-85155 None:intergenic 15.0%
!!! ATATTTTTTCTTTACAAAAG+TGG + tig0003267:86166-86185 Msa1339440:intron 15.0%
!!! AAGTTTTTCTTTAATAGTTT+GGG - tig0003267:85136-85155 None:intergenic 15.0%
!!! ATATTTTTTCTTTACAAAAG+TGG + tig0003267:86166-86185 Msa1339440:intron 15.0%
!!! AAAATGCGGATTATATATTA+TGG - tig0003267:85043-85062 None:intergenic 20.0%
!! TCATTCATTCAATATACTAA+TGG - tig0003267:85107-85126 None:intergenic 20.0%
!! TTAGTATATTGAATGAATGA+TGG + tig0003267:85107-85126 Msa1339440:exon 20.0%
!!! CAAGTTTTTCTTTAATAGTT+TGG - tig0003267:85137-85156 None:intergenic 20.0%
!! AACTATTAAAGAAAAACTTG+TGG + tig0003267:85137-85156 Msa1339440:CDS 20.0%
!! TTCTGATGAAAATATAGAAA+CGG - tig0003267:85960-85979 None:intergenic 20.0%
!!! ACAAAAGTGGTTTTTATTAT+TGG + tig0003267:86179-86198 Msa1339440:intron 20.0%
!! ACTTTAATAAATACAAGACA+TGG + tig0003267:86658-86677 Msa1339440:CDS 20.0%
!!! ATGTTGATTTTATTTAGACT+AGG + tig0003267:87051-87070 Msa1339440:three_prime_UTR 20.0%
!!! AAAATGCGGATTATATATTA+TGG - tig0003267:85043-85062 None:intergenic 20.0%
!! TCATTCATTCAATATACTAA+TGG - tig0003267:85107-85126 None:intergenic 20.0%
!! TTAGTATATTGAATGAATGA+TGG + tig0003267:85107-85126 Msa1339440:exon 20.0%
!!! CAAGTTTTTCTTTAATAGTT+TGG - tig0003267:85137-85156 None:intergenic 20.0%
!! AACTATTAAAGAAAAACTTG+TGG + tig0003267:85137-85156 Msa1339440:CDS 20.0%
!! TTCTGATGAAAATATAGAAA+CGG - tig0003267:85960-85979 None:intergenic 20.0%
!!! ACAAAAGTGGTTTTTATTAT+TGG + tig0003267:86179-86198 Msa1339440:intron 20.0%
!! ACTTTAATAAATACAAGACA+TGG + tig0003267:86658-86677 Msa1339440:CDS 20.0%
! CGAAATTATGAATCAAAATG+CGG - tig0003267:85057-85076 None:intergenic 25.0%
! AATAGCTTAAGTACTTCATA+AGG - tig0003267:85639-85658 None:intergenic 25.0%
! TTGTTAATTGTATTGTACCT+TGG - tig0003267:85892-85911 None:intergenic 25.0%
!!! TTAACAATAAAAAGCACCTA+AGG + tig0003267:85905-85924 Msa1339440:intron 25.0%
!!! TAACAATAAAAAGCACCTAA+GGG + tig0003267:85906-85925 Msa1339440:intron 25.0%
!! ATTTGAAACAGTGATTATCT+TGG + tig0003267:85933-85952 Msa1339440:intron 25.0%
!! TGGTTTTTATTATTGGACAA+AGG + tig0003267:86186-86205 Msa1339440:intron 25.0%
!!! AAGTTGTTCACATTGATTTT+AGG - tig0003267:86378-86397 None:intergenic 25.0%
! TTGTTCTTACGTATCTTTAA+TGG + tig0003267:86467-86486 Msa1339440:CDS 25.0%
! TTTCATTCAGACATTGTTTA+CGG + tig0003267:86764-86783 Msa1339440:CDS 25.0%
! CGAAATTATGAATCAAAATG+CGG - tig0003267:85057-85076 None:intergenic 25.0%
! AATAGCTTAAGTACTTCATA+AGG - tig0003267:85639-85658 None:intergenic 25.0%
! TTGTTAATTGTATTGTACCT+TGG - tig0003267:85892-85911 None:intergenic 25.0%
!!! TTAACAATAAAAAGCACCTA+AGG + tig0003267:85905-85924 Msa1339440:intron 25.0%
!!! TAACAATAAAAAGCACCTAA+GGG + tig0003267:85906-85925 Msa1339440:intron 25.0%
!! ATTTGAAACAGTGATTATCT+TGG + tig0003267:85933-85952 Msa1339440:intron 25.0%
!! TGGTTTTTATTATTGGACAA+AGG + tig0003267:86186-86205 Msa1339440:intron 25.0%
!!! AAGTTGTTCACATTGATTTT+AGG - tig0003267:86378-86397 None:intergenic 25.0%
! TTGTTCTTACGTATCTTTAA+TGG + tig0003267:86467-86486 Msa1339440:CDS 25.0%
! TTTCATTCAGACATTGTTTA+CGG + tig0003267:86764-86783 Msa1339440:CDS 25.0%
!!! TTTTCATTGTCATGATGGAT+AGG - tig0003267:85285-85304 None:intergenic 30.0%
! TCAGATTTTCATTGTCATGA+TGG - tig0003267:85290-85309 None:intergenic 30.0%
AAACAACAAACTTAATCCAG+AGG + tig0003267:85356-85375 Msa1339440:CDS 30.0%
! ATGAAGTACTTAAGCTATTG+TGG + tig0003267:85640-85659 Msa1339440:CDS 30.0%
AATTCCTCGAACATCATTAT+TGG + tig0003267:85709-85728 Msa1339440:CDS 30.0%
ATTCCTCGAACATCATTATT+GGG + tig0003267:85710-85729 Msa1339440:CDS 30.0%
ATAGAAGATCTAAAAGCAGT+AGG + tig0003267:86270-86289 Msa1339440:CDS 30.0%
TGAAGGAATTGAGATCAAAA+GGG + tig0003267:86517-86536 Msa1339440:CDS 30.0%
TCAACATATTTGTCGATGTT+AGG - tig0003267:86612-86631 None:intergenic 30.0%
CACTTCTTTGGATTCTTAAT+AGG + tig0003267:86854-86873 Msa1339440:three_prime_UTR 30.0%
!!! TTTTCATTGTCATGATGGAT+AGG - tig0003267:85285-85304 None:intergenic 30.0%
! TCAGATTTTCATTGTCATGA+TGG - tig0003267:85290-85309 None:intergenic 30.0%
AAACAACAAACTTAATCCAG+AGG + tig0003267:85356-85375 Msa1339440:CDS 30.0%
! ATGAAGTACTTAAGCTATTG+TGG + tig0003267:85640-85659 Msa1339440:CDS 30.0%
AATTCCTCGAACATCATTAT+TGG + tig0003267:85709-85728 Msa1339440:CDS 30.0%
ATTCCTCGAACATCATTATT+GGG + tig0003267:85710-85729 Msa1339440:CDS 30.0%
ATAGAAGATCTAAAAGCAGT+AGG + tig0003267:86270-86289 Msa1339440:CDS 30.0%
TGAAGGAATTGAGATCAAAA+GGG + tig0003267:86517-86536 Msa1339440:CDS 30.0%
TCAACATATTTGTCGATGTT+AGG - tig0003267:86612-86631 None:intergenic 30.0%
CACTTCTTTGGATTCTTAAT+AGG + tig0003267:86854-86873 Msa1339440:three_prime_UTR 30.0%
! TCTACCACCTTTTGTATCTT+GGG - tig0003267:85201-85220 None:intergenic 35.0%
! ATCTACCACCTTTTGTATCT+TGG - tig0003267:85202-85221 None:intergenic 35.0%
CCAAATTTGGTATCTTTCTG+CGG - tig0003267:85227-85246 None:intergenic 35.0%
CGCAGAAAGATACCAAATTT+GGG + tig0003267:85225-85244 Msa1339440:CDS 35.0%
GCAGAAAGATACCAAATTTG+GGG + tig0003267:85226-85245 Msa1339440:CDS 35.0%
TTGTAGTACTTCCCCAAATT+TGG - tig0003267:85240-85259 None:intergenic 35.0%
! AGAGAAGTACAAGCTTATGT+GGG + tig0003267:85317-85336 Msa1339440:CDS 35.0%
! ATCTTTTTGTGTAGTTCCTC+TGG - tig0003267:85375-85394 None:intergenic 35.0%
TGCTAACATCGATAAACTGA+AGG + tig0003267:85398-85417 Msa1339440:CDS 35.0%
GCTAACATCGATAAACTGAA+GGG + tig0003267:85399-85418 Msa1339440:CDS 35.0%
ATGTTCTTTGCTGCATATCT+TGG + tig0003267:85518-85537 Msa1339440:CDS 35.0%
AGAAGATCAAGAAGATGAGT+GGG - tig0003267:85840-85859 None:intergenic 35.0%
ATTGTATTGTACCTTGGACT+TGG - tig0003267:85886-85905 None:intergenic 35.0%
AGCAGTAGGAATAAGACTTA+AGG + tig0003267:86284-86303 Msa1339440:CDS 35.0%
TCAGAGAAAACTATGTCTGT+TGG - tig0003267:86327-86346 None:intergenic 35.0%
! ACAGACATAGTTTTCTCTGA+AGG + tig0003267:86327-86346 Msa1339440:CDS 35.0%
!! ACATAGTTTTCTCTGAAGGA+TGG + tig0003267:86331-86350 Msa1339440:CDS 35.0%
!! TATCAGGTTGAGTAAAGTAC+AGG - tig0003267:86406-86425 None:intergenic 35.0%
TCAAAGTCGTTCTCAAAATC+TGG - tig0003267:86444-86463 None:intergenic 35.0%
GTGAAGGAATTGAGATCAAA+AGG + tig0003267:86516-86535 Msa1339440:CDS 35.0%
! GCCAATCTTTTCAATACCAT+AGG + tig0003267:86573-86592 Msa1339440:CDS 35.0%
! GCCTATGGTATTGAAAAGAT+TGG - tig0003267:86577-86596 None:intergenic 35.0%
AATGCTCACGTAATTTCTCT+TGG - tig0003267:86638-86657 None:intergenic 35.0%
CTGAATGAAAGTAAGAGCAA+GGG - tig0003267:86754-86773 None:intergenic 35.0%
TCTGAATGAAAGTAAGAGCA+AGG - tig0003267:86755-86774 None:intergenic 35.0%
! TGACAATGGTGTTTTCGTTA+TGG + tig0003267:86824-86843 Msa1339440:three_prime_UTR 35.0%
TATGGCATTCATCACTTCTT+TGG + tig0003267:86842-86861 Msa1339440:three_prime_UTR 35.0%
! AGATCTACGTGTTACTCTAT+TGG + tig0003267:87021-87040 Msa1339440:three_prime_UTR 35.0%
! TCTACCACCTTTTGTATCTT+GGG - tig0003267:85201-85220 None:intergenic 35.0%
! ATCTACCACCTTTTGTATCT+TGG - tig0003267:85202-85221 None:intergenic 35.0%
CCAAATTTGGTATCTTTCTG+CGG - tig0003267:85227-85246 None:intergenic 35.0%
CGCAGAAAGATACCAAATTT+GGG + tig0003267:85225-85244 Msa1339440:CDS 35.0%
GCAGAAAGATACCAAATTTG+GGG + tig0003267:85226-85245 Msa1339440:CDS 35.0%
TTGTAGTACTTCCCCAAATT+TGG - tig0003267:85240-85259 None:intergenic 35.0%
! AGAGAAGTACAAGCTTATGT+GGG + tig0003267:85317-85336 Msa1339440:CDS 35.0%
! ATCTTTTTGTGTAGTTCCTC+TGG - tig0003267:85375-85394 None:intergenic 35.0%
TGCTAACATCGATAAACTGA+AGG + tig0003267:85398-85417 Msa1339440:CDS 35.0%
GCTAACATCGATAAACTGAA+GGG + tig0003267:85399-85418 Msa1339440:CDS 35.0%
ATGTTCTTTGCTGCATATCT+TGG + tig0003267:85518-85537 Msa1339440:CDS 35.0%
AGAAGATCAAGAAGATGAGT+GGG - tig0003267:85840-85859 None:intergenic 35.0%
ATTGTATTGTACCTTGGACT+TGG - tig0003267:85886-85905 None:intergenic 35.0%
AGCAGTAGGAATAAGACTTA+AGG + tig0003267:86284-86303 Msa1339440:CDS 35.0%
TCAGAGAAAACTATGTCTGT+TGG - tig0003267:86327-86346 None:intergenic 35.0%
! ACAGACATAGTTTTCTCTGA+AGG + tig0003267:86327-86346 Msa1339440:CDS 35.0%
!! ACATAGTTTTCTCTGAAGGA+TGG + tig0003267:86331-86350 Msa1339440:CDS 35.0%
!! TATCAGGTTGAGTAAAGTAC+AGG - tig0003267:86406-86425 None:intergenic 35.0%
TCAAAGTCGTTCTCAAAATC+TGG - tig0003267:86444-86463 None:intergenic 35.0%
GTGAAGGAATTGAGATCAAA+AGG + tig0003267:86516-86535 Msa1339440:CDS 35.0%
! GCCAATCTTTTCAATACCAT+AGG + tig0003267:86573-86592 Msa1339440:CDS 35.0%
! GCCTATGGTATTGAAAAGAT+TGG - tig0003267:86577-86596 None:intergenic 35.0%
AATGCTCACGTAATTTCTCT+TGG - tig0003267:86638-86657 None:intergenic 35.0%
CTGAATGAAAGTAAGAGCAA+GGG - tig0003267:86754-86773 None:intergenic 35.0%
TCTGAATGAAAGTAAGAGCA+AGG - tig0003267:86755-86774 None:intergenic 35.0%
! TGACAATGGTGTTTTCGTTA+TGG + tig0003267:86824-86843 Msa1339440:three_prime_UTR 35.0%
TATGGCATTCATCACTTCTT+TGG + tig0003267:86842-86861 Msa1339440:three_prime_UTR 35.0%
! AGATCTACGTGTTACTCTAT+TGG + tig0003267:87021-87040 Msa1339440:three_prime_UTR 35.0%
TATCTTGGGTCGTGAACTTT+CGG - tig0003267:85187-85206 None:intergenic 40.0%
TTCACGACCCAAGATACAAA+AGG + tig0003267:85191-85210 Msa1339440:CDS 40.0%
CCGCAGAAAGATACCAAATT+TGG + tig0003267:85224-85243 Msa1339440:CDS 40.0%
! GAAGTACTACAAACCCAAGT+TGG + tig0003267:85248-85267 Msa1339440:CDS 40.0%
!! AAACCCAAGTTGGTGTCAAT+AGG + tig0003267:85258-85277 Msa1339440:CDS 40.0%
! GAGAGAAGTACAAGCTTATG+TGG + tig0003267:85316-85335 Msa1339440:CDS 40.0%
TCAACTCGAAAGTCTCTTGA+AGG + tig0003267:85447-85466 Msa1339440:CDS 40.0%
CCTTAATATTCATGTGCCCT+GGG - tig0003267:85563-85582 None:intergenic 40.0%
! TGATCAACTTGTTCTTCTGG+TGG + tig0003267:85584-85603 Msa1339440:CDS 40.0%
TTATCTGACTGTGACTCATC+TGG - tig0003267:85741-85760 None:intergenic 40.0%
AGATGAGTCACAGTCAGATA+AGG + tig0003267:85740-85759 Msa1339440:CDS 40.0%
CAGAAGATCAAGAAGATGAG+TGG - tig0003267:85841-85860 None:intergenic 40.0%
CTGTTTCAAATTCTGCCCTT+AGG - tig0003267:85924-85943 None:intergenic 40.0%
! AATTTTGAATCCTAAGCCCC+CGG + tig0003267:86112-86131 Msa1339440:intron 40.0%
TCTATGCCCCTGTATGTAAT+CGG - tig0003267:86255-86274 None:intergenic 40.0%
GACACATCTCATATGCTATC+AGG - tig0003267:86422-86441 None:intergenic 40.0%
ATTCCTTCACATCTTCAGGA+TGG - tig0003267:86506-86525 None:intergenic 40.0%
CTCAATTCCTTCACATCTTC+AGG - tig0003267:86510-86529 None:intergenic 40.0%
! AAGGGATTTTGTGCACCTTT+TGG + tig0003267:86535-86554 Msa1339440:CDS 40.0%
AACTACCTCATCACTCCAAA+AGG - tig0003267:86553-86572 None:intergenic 40.0%
GCACTTACTTCAACAATCCT+TGG + tig0003267:86697-86716 Msa1339440:CDS 40.0%
TGCAGCAAGGAATGCAATAA+CGG - tig0003267:86724-86743 None:intergenic 40.0%
GACATTGTTTACGGTTCACT+CGG + tig0003267:86773-86792 Msa1339440:CDS 40.0%
TGCATGGTTCGTTATGACAA+TGG + tig0003267:86810-86829 Msa1339440:three_prime_UTR 40.0%
TATCTTGGGTCGTGAACTTT+CGG - tig0003267:85187-85206 None:intergenic 40.0%
TTCACGACCCAAGATACAAA+AGG + tig0003267:85191-85210 Msa1339440:CDS 40.0%
CCGCAGAAAGATACCAAATT+TGG + tig0003267:85224-85243 Msa1339440:CDS 40.0%
! GAAGTACTACAAACCCAAGT+TGG + tig0003267:85248-85267 Msa1339440:CDS 40.0%
!! AAACCCAAGTTGGTGTCAAT+AGG + tig0003267:85258-85277 Msa1339440:CDS 40.0%
! GAGAGAAGTACAAGCTTATG+TGG + tig0003267:85316-85335 Msa1339440:CDS 40.0%
TCAACTCGAAAGTCTCTTGA+AGG + tig0003267:85447-85466 Msa1339440:CDS 40.0%
CCTTAATATTCATGTGCCCT+GGG - tig0003267:85563-85582 None:intergenic 40.0%
! TGATCAACTTGTTCTTCTGG+TGG + tig0003267:85584-85603 Msa1339440:CDS 40.0%
TTATCTGACTGTGACTCATC+TGG - tig0003267:85741-85760 None:intergenic 40.0%
AGATGAGTCACAGTCAGATA+AGG + tig0003267:85740-85759 Msa1339440:CDS 40.0%
CAGAAGATCAAGAAGATGAG+TGG - tig0003267:85841-85860 None:intergenic 40.0%
CTGTTTCAAATTCTGCCCTT+AGG - tig0003267:85924-85943 None:intergenic 40.0%
! AATTTTGAATCCTAAGCCCC+CGG + tig0003267:86112-86131 Msa1339440:intron 40.0%
TCTATGCCCCTGTATGTAAT+CGG - tig0003267:86255-86274 None:intergenic 40.0%
GACACATCTCATATGCTATC+AGG - tig0003267:86422-86441 None:intergenic 40.0%
ATTCCTTCACATCTTCAGGA+TGG - tig0003267:86506-86525 None:intergenic 40.0%
CTCAATTCCTTCACATCTTC+AGG - tig0003267:86510-86529 None:intergenic 40.0%
! AAGGGATTTTGTGCACCTTT+TGG + tig0003267:86535-86554 Msa1339440:CDS 40.0%
AACTACCTCATCACTCCAAA+AGG - tig0003267:86553-86572 None:intergenic 40.0%
GCACTTACTTCAACAATCCT+TGG + tig0003267:86697-86716 Msa1339440:CDS 40.0%
TGCAGCAAGGAATGCAATAA+CGG - tig0003267:86724-86743 None:intergenic 40.0%
GACATTGTTTACGGTTCACT+CGG + tig0003267:86773-86792 Msa1339440:CDS 40.0%
TGCATGGTTCGTTATGACAA+TGG + tig0003267:86810-86829 Msa1339440:three_prime_UTR 40.0%
ATCTTGGGTCGTGAACTTTC+GGG - tig0003267:85186-85205 None:intergenic 45.0%
ACGACCCAAGATACAAAAGG+TGG + tig0003267:85194-85213 Msa1339440:CDS 45.0%
GGACCTATTGACACCAACTT+GGG - tig0003267:85264-85283 None:intergenic 45.0%
AGGACCTATTGACACCAACT+TGG - tig0003267:85265-85284 None:intergenic 45.0%
CGAAAGTCTCTTGAAGGCTT+TGG + tig0003267:85453-85472 Msa1339440:CDS 45.0%
! TCCACGACAGCTTTTCTTCA+AGG - tig0003267:85482-85501 None:intergenic 45.0%
TGCATATCTTGGAGAAAGCC+AGG + tig0003267:85529-85548 Msa1339440:CDS 45.0%
CCCAGGGCACATGAATATTA+AGG + tig0003267:85560-85579 Msa1339440:CDS 45.0%
GCCTTAATATTCATGTGCCC+TGG - tig0003267:85564-85583 None:intergenic 45.0%
! GGCTGATCAACTTGTTCTTC+TGG + tig0003267:85581-85600 Msa1339440:CDS 45.0%
! TCAACTTGTTCTTCTGGTGG+TGG + tig0003267:85587-85606 Msa1339440:CDS 45.0%
TGGCCCAATAATGATGTTCG+AGG - tig0003267:85716-85735 None:intergenic 45.0%
GTCACAGTCAGATAAGGAGA+AGG + tig0003267:85746-85765 Msa1339440:CDS 45.0%
GTCAGATAAGGAGAAGGTCA+TGG + tig0003267:85752-85771 Msa1339440:CDS 45.0%
GAGAAGGTCATGGTTCCAAA+AGG + tig0003267:85762-85781 Msa1339440:CDS 45.0%
AAGGTCATGGTTCCAAAAGG+AGG + tig0003267:85765-85784 Msa1339440:CDS 45.0%
TGTTATCTCTGAGTGACACC+GGG - tig0003267:86133-86152 None:intergenic 45.0%
GTGTTATCTCTGAGTGACAC+CGG - tig0003267:86134-86153 None:intergenic 45.0%
AGTGCAAGCCGATTACATAC+AGG + tig0003267:86244-86263 Msa1339440:CDS 45.0%
GTGCAAGCCGATTACATACA+GGG + tig0003267:86245-86264 Msa1339440:CDS 45.0%
TGCAAGCCGATTACATACAG+GGG + tig0003267:86246-86265 Msa1339440:CDS 45.0%
CAATACCATAGGCACAGACT+TGG + tig0003267:86584-86603 Msa1339440:CDS 45.0%
ATACAAGACATGGATAGCGC+TGG + tig0003267:86668-86687 Msa1339440:CDS 45.0%
TACAAGACATGGATAGCGCT+GGG + tig0003267:86669-86688 Msa1339440:CDS 45.0%
AGGAATGCAATAACGGTCCA+AGG - tig0003267:86717-86736 None:intergenic 45.0%
CAAGGGCAATAAATGCAGCA+AGG - tig0003267:86737-86756 None:intergenic 45.0%
! TTCACTCGGCTTGCAAATGA+AGG + tig0003267:86787-86806 Msa1339440:CDS 45.0%
ATCTTGGGTCGTGAACTTTC+GGG - tig0003267:85186-85205 None:intergenic 45.0%
ACGACCCAAGATACAAAAGG+TGG + tig0003267:85194-85213 Msa1339440:CDS 45.0%
GGACCTATTGACACCAACTT+GGG - tig0003267:85264-85283 None:intergenic 45.0%
AGGACCTATTGACACCAACT+TGG - tig0003267:85265-85284 None:intergenic 45.0%
CGAAAGTCTCTTGAAGGCTT+TGG + tig0003267:85453-85472 Msa1339440:CDS 45.0%
! TCCACGACAGCTTTTCTTCA+AGG - tig0003267:85482-85501 None:intergenic 45.0%
TGCATATCTTGGAGAAAGCC+AGG + tig0003267:85529-85548 Msa1339440:CDS 45.0%
CCCAGGGCACATGAATATTA+AGG + tig0003267:85560-85579 Msa1339440:CDS 45.0%
GCCTTAATATTCATGTGCCC+TGG - tig0003267:85564-85583 None:intergenic 45.0%
! GGCTGATCAACTTGTTCTTC+TGG + tig0003267:85581-85600 Msa1339440:CDS 45.0%
! TCAACTTGTTCTTCTGGTGG+TGG + tig0003267:85587-85606 Msa1339440:CDS 45.0%
TGGCCCAATAATGATGTTCG+AGG - tig0003267:85716-85735 None:intergenic 45.0%
GTCACAGTCAGATAAGGAGA+AGG + tig0003267:85746-85765 Msa1339440:CDS 45.0%
GTCAGATAAGGAGAAGGTCA+TGG + tig0003267:85752-85771 Msa1339440:CDS 45.0%
GAGAAGGTCATGGTTCCAAA+AGG + tig0003267:85762-85781 Msa1339440:CDS 45.0%
AAGGTCATGGTTCCAAAAGG+AGG + tig0003267:85765-85784 Msa1339440:CDS 45.0%
TGTTATCTCTGAGTGACACC+GGG - tig0003267:86133-86152 None:intergenic 45.0%
GTGTTATCTCTGAGTGACAC+CGG - tig0003267:86134-86153 None:intergenic 45.0%
AGTGCAAGCCGATTACATAC+AGG + tig0003267:86244-86263 Msa1339440:CDS 45.0%
GTGCAAGCCGATTACATACA+GGG + tig0003267:86245-86264 Msa1339440:CDS 45.0%
TGCAAGCCGATTACATACAG+GGG + tig0003267:86246-86265 Msa1339440:CDS 45.0%
CAATACCATAGGCACAGACT+TGG + tig0003267:86584-86603 Msa1339440:CDS 45.0%
ATACAAGACATGGATAGCGC+TGG + tig0003267:86668-86687 Msa1339440:CDS 45.0%
TACAAGACATGGATAGCGCT+GGG + tig0003267:86669-86688 Msa1339440:CDS 45.0%
AGGAATGCAATAACGGTCCA+AGG - tig0003267:86717-86736 None:intergenic 45.0%
CAAGGGCAATAAATGCAGCA+AGG - tig0003267:86737-86756 None:intergenic 45.0%
! TTCACTCGGCTTGCAAATGA+AGG + tig0003267:86787-86806 Msa1339440:CDS 45.0%
GCCTTGAAGAAAAGCTGTCG+TGG + tig0003267:85478-85497 Msa1339440:CDS 50.0%
TCGTGGATGTTGTTCGTGGA+TGG + tig0003267:85495-85514 Msa1339440:CDS 50.0%
!! TGTTCTTCTGGTGGTGGATG+TGG + tig0003267:85593-85612 Msa1339440:CDS 50.0%
!!! GGTGGTGGATGTGGTTTTGT+TGG + tig0003267:85602-85621 Msa1339440:CDS 50.0%
TGACTGTGACTCATCTGGTG+TGG - tig0003267:85736-85755 None:intergenic 50.0%
GTCATGGTTCCAAAAGGAGG+AGG + tig0003267:85768-85787 Msa1339440:CDS 50.0%
! CTATGCTCTCCTCCTCCTTT+TGG - tig0003267:85780-85799 None:intergenic 50.0%
CCTTGGACTTGGATGTAGTG+AGG - tig0003267:85875-85894 None:intergenic 50.0%
CCTCACTACATCCAAGTCCA+AGG + tig0003267:85872-85891 Msa1339440:CDS 50.0%
TTATCTCTGAGTGACACCGG+GGG - tig0003267:86131-86150 None:intergenic 50.0%
GTTATCTCTGAGTGACACCG+GGG - tig0003267:86132-86151 None:intergenic 50.0%
CGACCATCCTGAAGATGTGA+AGG + tig0003267:86500-86519 Msa1339440:CDS 50.0%
!!! GTGCACCTTTTGGAGTGATG+AGG + tig0003267:86545-86564 Msa1339440:CDS 50.0%
AGGTACCAAGTCTGTGCCTA+TGG - tig0003267:86592-86611 None:intergenic 50.0%
! GGCTTGCAAATGAAGGTGCA+TGG + tig0003267:86794-86813 Msa1339440:exon 50.0%
GCCTTGAAGAAAAGCTGTCG+TGG + tig0003267:85478-85497 Msa1339440:CDS 50.0%
TCGTGGATGTTGTTCGTGGA+TGG + tig0003267:85495-85514 Msa1339440:CDS 50.0%
!! TGTTCTTCTGGTGGTGGATG+TGG + tig0003267:85593-85612 Msa1339440:CDS 50.0%
!!! GGTGGTGGATGTGGTTTTGT+TGG + tig0003267:85602-85621 Msa1339440:CDS 50.0%
TGACTGTGACTCATCTGGTG+TGG - tig0003267:85736-85755 None:intergenic 50.0%
GTCATGGTTCCAAAAGGAGG+AGG + tig0003267:85768-85787 Msa1339440:CDS 50.0%
! CTATGCTCTCCTCCTCCTTT+TGG - tig0003267:85780-85799 None:intergenic 50.0%
CCTTGGACTTGGATGTAGTG+AGG - tig0003267:85875-85894 None:intergenic 50.0%
CCTCACTACATCCAAGTCCA+AGG + tig0003267:85872-85891 Msa1339440:CDS 50.0%
TTATCTCTGAGTGACACCGG+GGG - tig0003267:86131-86150 None:intergenic 50.0%
GTTATCTCTGAGTGACACCG+GGG - tig0003267:86132-86151 None:intergenic 50.0%
CGACCATCCTGAAGATGTGA+AGG + tig0003267:86500-86519 Msa1339440:CDS 50.0%
!!! GTGCACCTTTTGGAGTGATG+AGG + tig0003267:86545-86564 Msa1339440:CDS 50.0%
AGGTACCAAGTCTGTGCCTA+TGG - tig0003267:86592-86611 None:intergenic 50.0%
! GGCTTGCAAATGAAGGTGCA+TGG + tig0003267:86794-86813 Msa1339440:exon 50.0%
GCTGTCGTGGATGTTGTTCG+TGG + tig0003267:85491-85510 Msa1339440:CDS 55.0%
ATCTTGGAGAAAGCCAGGCG+TGG + tig0003267:85534-85553 Msa1339440:CDS 55.0%
GCTGTCGTGGATGTTGTTCG+TGG + tig0003267:85491-85510 Msa1339440:CDS 55.0%
ATCTTGGAGAAAGCCAGGCG+TGG + tig0003267:85534-85553 Msa1339440:CDS 55.0%
CTGAGTGACACCGGGGGCTT+AGG - tig0003267:86125-86144 None:intergenic 65.0%
CTGAGTGACACCGGGGGCTT+AGG - tig0003267:86125-86144 None:intergenic 65.0%
AAAGCCAGGCGTGGCGACCC+AGG + tig0003267:85543-85562 Msa1339440:CDS 70.0%
AAGCCAGGCGTGGCGACCCA+GGG + tig0003267:85544-85563 Msa1339440:CDS 70.0%
AAAGCCAGGCGTGGCGACCC+AGG + tig0003267:85543-85562 Msa1339440:CDS 70.0%
AAGCCAGGCGTGGCGACCCA+GGG + tig0003267:85544-85563 Msa1339440:CDS 70.0%
! GTGCCCTGGGTCGCCACGCC+TGG - tig0003267:85550-85569 None:intergenic 80.0%
! GTGCCCTGGGTCGCCACGCC+TGG - tig0003267:85550-85569 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0003267 gene 85000 87072 85000 ID=Msa1339440;Name=Msa1339440
tig0003267 mRNA 85000 87072 85000 ID=Msa1339440-mRNA-1;Parent=Msa1339440;Name=Msa1339440-mRNA-1;_AED=0.05;_eAED=0.05;_QI=123|1|1|1|1|1|2|266|447
tig0003267 exon 85000 85893 85000 ID=Msa1339440-mRNA-1:exon:2124;Parent=Msa1339440-mRNA-1
tig0003267 exon 86234 87072 86234 ID=Msa1339440-mRNA-1:exon:2125;Parent=Msa1339440-mRNA-1
tig0003267 five_prime_UTR 85000 85122 85000 ID=Msa1339440-mRNA-1:five_prime_utr;Parent=Msa1339440-mRNA-1
tig0003267 CDS 85123 85893 85123 ID=Msa1339440-mRNA-1:cds;Parent=Msa1339440-mRNA-1
tig0003267 CDS 86234 86806 86234 ID=Msa1339440-mRNA-1:cds;Parent=Msa1339440-mRNA-1
tig0003267 three_prime_UTR 86807 87072 86807 ID=Msa1339440-mRNA-1:three_prime_utr;Parent=Msa1339440-mRNA-1
Gene Sequence

>Msa1339440

ATGATGGCATCCCAAACTATTAAAGAAAAACTTGTGGAGCTACAAAAATCAAAGCAAACACCCGAAAGTTCACGACCCAAGATACAAAAGGTGGTAGATTACCGCAGAAAGATACCAAATTTGGGGAAGTACTACAAACCCAAGTTGGTGTCAATAGGTCCTATCCATCATGACAATGAAAATCTGAAGTTACGAGAGAAGTACAAGCTTATGTGGGCATCAAAATACATAGAAAACAACAAACTTAATCCAGAGGAACTACACAAAAAGATTGCTGCTAACATCGATAAACTGAAGGGTCGTTTTAGCGACGATGTTTTAACTTCAACTCGAAAGTCTCTTGAAGGCTTTGGTAGCCTTGAAGAAAAGCTGTCGTGGATGTTGTTCGTGGATGGATGTTCTTTGCTGCATATCTTGGAGAAAGCCAGGCGTGGCGACCCAGGGCACATGAATATTAAGGCTGATCAACTTGTTCTTCTGGTGGTGGATGTGGTTTTGTTGGAGAATCAACTTCCTTATGAAGTACTTAAGCTATTGTGGAAAGATAGCAAAGATAGCGAGAGTGAATTGATAAAAAGCATGACGAAATTCCTCGAACATCATTATTGGGCCACACCAGATGAGTCACAGTCAGATAAGGAGAAGGTCATGGTTCCAAAAGGAGGAGGAGAGCATAGTGTATCAATAACAAATGAGTCACAGTCAGAGACAATACCCACTCATCTTCTTGATCTTCTGCATAAACTCAACCTCACTACATCCAAGTCCAAGAAGAAGAACGAGTGCAAGCCGATTACATACAGGGGCATAGAAGATCTAAAAGCAGTAGGAATAAGACTTAAGGCAAGCTTTACAAGAAAGCCAACAGACATAGTTTTCTCTGAAGGATGGTTTACTGCAAAACTGACTATTCCTAAAATCAATGTGAACAACTTTACAGCCTGTACTTTACTCAACCTGATAGCATATGAGATGTGTCCAGATTTTGAGAACGACTTTGAGATTTGTTCTTACGTATCTTTAATGGACTCGCTCATCGACCATCCTGAAGATGTGAAGGAATTGAGATCAAAAGGGATTTTGTGCACCTTTTGGAGTGATGAGGTAGTTGCCAATCTTTTCAATACCATAGGCACAGACTTGGTACCTAACATCGACAAATATGTTGAAGTCCAAGAGAAATTACGTGAGCATTACTTTAATAAATACAAGACATGGATAGCGCTGGGTTATCGCACTTACTTCAACAATCCTTGGACCGTTATTGCATTCCTTGCTGCATTTATTGCCCTTGCTCTTACTTTCATTCAGACATTGTTTACGGTTCACTCGGCTTGCAAATGA
Protein sequence

>Msa1339440

MMASQTIKEKLVELQKSKQTPESSRPKIQKVVDYRRKIPNLGKYYKPKLVSIGPIHHDNENLKLREKYKLMWASKYIENNKLNPEELHKKIAANIDKLKGRFSDDVLTSTRKSLEGFGSLEEKLSWMLFVDGCSLLHILEKARRGDPGHMNIKADQLVLLVVDVVLLENQLPYEVLKLLWKDSKDSESELIKSMTKFLEHHYWATPDESQSDKEKVMVPKGGGEHSVSITNESQSETIPTHLLDLLHKLNLTTSKSKKKNECKPITYRGIEDLKAVGIRLKASFTRKPTDIVFSEGWFTAKLTIPKINVNNFTACTLLNLIAYEMCPDFENDFEICSYVSLMDSLIDHPEDVKELRSKGILCTFWSDEVVANLFNTIGTDLVPNIDKYVEVQEKLREHYFNKYKTWIALGYRTYFNNPWTVIAFLAAFIALALTFIQTLFTVHSACK*