Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999410 | XP_039690907.1 | 57.778 | 90 | 26 | 1 | 39 | 128 | 43 | 120 | 6.78e-20 | 91.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999410 | A0A072TDK6 | 57.500 | 80 | 22 | 1 | 38 | 117 | 42 | 109 | 2.37e-16 | 81.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0999410 | 0.847618 | 1.032027e-59 | -8.615850e-47 |
| Msa0006980 | Msa0999410 | 0.805234 | 1.472709e-49 | -8.615850e-47 |
| Msa0015710 | Msa0999410 | 0.823430 | 1.391238e-53 | -8.615850e-47 |
| Msa0016120 | Msa0999410 | 0.804932 | 1.703779e-49 | -8.615850e-47 |
| Msa0022640 | Msa0999410 | 0.811196 | 7.900585e-51 | -8.615850e-47 |
| Msa0050040 | Msa0999410 | 0.809017 | 2.329652e-50 | -8.615850e-47 |
| Msa0055450 | Msa0999410 | 0.822861 | 1.888969e-53 | -8.615850e-47 |
| Msa0080990 | Msa0999410 | 0.815787 | 7.730099e-52 | -8.615850e-47 |
| Msa0102990 | Msa0999410 | 0.807569 | 4.740592e-50 | -8.615850e-47 |
| Msa0104500 | Msa0999410 | 0.805664 | 1.196934e-49 | -8.615850e-47 |
| Msa0106790 | Msa0999410 | 0.826059 | 3.338133e-54 | -8.615850e-47 |
| Msa0109880 | Msa0999410 | 0.800725 | 1.259536e-48 | -8.615850e-47 |
| Msa0118400 | Msa0999410 | 0.813578 | 2.384914e-51 | -8.615850e-47 |
| Msa0639460 | Msa0999410 | 0.825640 | 4.198753e-54 | -8.615850e-47 |
| Msa0641250 | Msa0999410 | 0.800278 | 1.553264e-48 | -8.615850e-47 |
| Msa0641360 | Msa0999410 | 0.803759 | 2.990165e-49 | -8.615850e-47 |
| Msa0657970 | Msa0999410 | 0.801055 | 1.078275e-48 | -8.615850e-47 |
| Msa0667850 | Msa0999410 | 0.812079 | 5.077047e-51 | -8.615850e-47 |
| Msa0669840 | Msa0999410 | 0.863547 | 2.302749e-64 | -8.615850e-47 |
| Msa0682360 | Msa0999410 | 0.825957 | 3.531541e-54 | -8.615850e-47 |
| Msa0682530 | Msa0999410 | 0.827181 | 1.802526e-54 | -8.615850e-47 |
| Msa0739580 | Msa0999410 | 0.837892 | 3.975281e-57 | -8.615850e-47 |
| Msa0748000 | Msa0999410 | 0.812223 | 4.723882e-51 | -8.615850e-47 |
| Msa0764820 | Msa0999410 | 0.810077 | 1.379043e-50 | -8.615850e-47 |
| Msa0782360 | Msa0999410 | 0.833292 | 5.799139e-56 | -8.615850e-47 |
| Msa0786040 | Msa0999410 | 0.831933 | 1.260072e-55 | -8.615850e-47 |
| Msa0823400 | Msa0999410 | 0.811238 | 7.735882e-51 | -8.615850e-47 |
| Msa0828830 | Msa0999410 | 0.803450 | 3.466897e-49 | -8.615850e-47 |
| Msa0840500 | Msa0999410 | 0.801399 | 9.169457e-49 | -8.615850e-47 |
| Msa0124130 | Msa0999410 | 0.816376 | 5.710131e-52 | -8.615850e-47 |
| Msa0130570 | Msa0999410 | 0.803701 | 3.074945e-49 | -8.615850e-47 |
| Msa0141600 | Msa0999410 | 0.803382 | 3.580915e-49 | -8.615850e-47 |
| Msa0147600 | Msa0999410 | 0.803511 | 3.365983e-49 | -8.615850e-47 |
| Msa0149140 | Msa0999410 | 0.814791 | 1.287093e-51 | -8.615850e-47 |
| Msa0152500 | Msa0999410 | 0.805146 | 1.536472e-49 | -8.615850e-47 |
| Msa0153420 | Msa0999410 | 0.826863 | 2.147485e-54 | -8.615850e-47 |
| Msa0156250 | Msa0999410 | 0.811627 | 6.369190e-51 | -8.615850e-47 |
| Msa0161680 | Msa0999410 | 0.819576 | 1.080414e-52 | -8.615850e-47 |
| Msa0176470 | Msa0999410 | 0.812186 | 4.811133e-51 | -8.615850e-47 |
| Msa0185490 | Msa0999410 | 0.802369 | 5.795638e-49 | -8.615850e-47 |
| Msa0194380 | Msa0999410 | 0.834563 | 2.788504e-56 | -8.615850e-47 |
| Msa0203030 | Msa0999410 | 0.829970 | 3.820080e-55 | -8.615850e-47 |
| Msa0212150 | Msa0999410 | 0.846879 | 1.645277e-59 | -8.615850e-47 |
| Msa0219190 | Msa0999410 | 0.826105 | 3.255830e-54 | -8.615850e-47 |
| Msa0221290 | Msa0999410 | 0.818911 | 1.530935e-52 | -8.615850e-47 |
| Msa0236110 | Msa0999410 | 0.805287 | 1.435934e-49 | -8.615850e-47 |
| Msa0373960 | Msa0999410 | 0.852367 | 4.835273e-61 | -8.615850e-47 |
| Msa0392420 | Msa0999410 | 0.817959 | 2.515238e-52 | -8.615850e-47 |
| Msa0392460 | Msa0999410 | 0.806397 | 8.391984e-50 | -8.615850e-47 |
| Msa0406000 | Msa0999410 | 0.852928 | 3.345420e-61 | -8.615850e-47 |
| Msa0423100 | Msa0999410 | 0.835615 | 1.513457e-56 | -8.615850e-47 |
| Msa0424330 | Msa0999410 | 0.821688 | 3.534637e-53 | -8.615850e-47 |
| Msa0424340 | Msa0999410 | 0.829804 | 4.192691e-55 | -8.615850e-47 |
| Msa0436500 | Msa0999410 | 0.816715 | 4.794145e-52 | -8.615850e-47 |
| Msa0451400 | Msa0999410 | 0.860956 | 1.438816e-63 | -8.615850e-47 |
| Msa0469260 | Msa0999410 | 0.846269 | 2.415159e-59 | -8.615850e-47 |
| Msa0986030 | Msa0999410 | 0.832516 | 9.041473e-56 | -8.615850e-47 |
| Msa0996270 | Msa0999410 | 0.800240 | 1.581656e-48 | -8.615850e-47 |
| Msa0999300 | Msa0999410 | 0.847204 | 1.341138e-59 | -8.615850e-47 |
| Msa0999340 | Msa0999410 | 0.885725 | 6.345901e-72 | -8.615850e-47 |
| Msa0999350 | Msa0999410 | 0.921517 | 3.234291e-88 | -8.615850e-47 |
| Msa0999360 | Msa0999410 | 0.983634 | 2.780810e-158 | -8.615850e-47 |
| Msa0999390 | Msa0999410 | 0.878227 | 3.329767e-69 | -8.615850e-47 |
| Msa0999400 | Msa0999410 | 0.926538 | 4.087543e-91 | -8.615850e-47 |
| Msa0999410 | Msa0999700 | 0.850582 | 1.546602e-60 | -8.615850e-47 |
| Msa0999410 | Msa1001890 | 0.809804 | 1.578593e-50 | -8.615850e-47 |
| Msa0999410 | Msa1034680 | 0.829770 | 4.275348e-55 | -8.615850e-47 |
| Msa0999410 | Msa1037890 | 0.821000 | 5.093967e-53 | -8.615850e-47 |
| Msa0999410 | Msa1037900 | 0.820596 | 6.308039e-53 | -8.615850e-47 |
| Msa0999410 | Msa1060580 | 0.826315 | 2.902255e-54 | -8.615850e-47 |
| Msa0999410 | Msa1073340 | 0.806880 | 6.634502e-50 | -8.615850e-47 |
| Msa0999410 | Msa1084520 | 0.817518 | 3.163427e-52 | -8.615850e-47 |
| Msa0999410 | Msa1092020 | 0.809021 | 2.324253e-50 | -8.615850e-47 |
| Msa0999410 | Msa1096210 | 0.808987 | 2.363812e-50 | -8.615850e-47 |
| Msa0999410 | Msa1105890 | 0.820077 | 8.300264e-53 | -8.615850e-47 |
| Msa0999410 | Msa1135380 | 0.814882 | 1.228407e-51 | -8.615850e-47 |
| Msa0999410 | Msa1145020 | 0.843117 | 1.706655e-58 | -8.615850e-47 |
| Msa0999410 | Msa1171310 | 0.808208 | 3.467632e-50 | -8.615850e-47 |
| Msa0999410 | Msa1200440 | 0.809522 | 1.814872e-50 | -8.615850e-47 |
| Msa0999410 | Msa1201110 | 0.815760 | 7.836090e-52 | -8.615850e-47 |
| Msa0999410 | Msa1201160 | 0.834101 | 3.641468e-56 | -8.615850e-47 |
| Msa0999410 | Msa1228190 | 0.891946 | 2.496615e-74 | -8.615850e-47 |
| Msa0999410 | Msa1233560 | 0.807197 | 5.684359e-50 | -8.615850e-47 |
| Msa0999410 | Msa1243020 | 0.803560 | 3.288447e-49 | -8.615850e-47 |
| Msa0999410 | Msa1248040 | 0.812318 | 4.503649e-51 | -8.615850e-47 |
| Msa0999410 | Msa1271260 | 0.876075 | 1.863148e-68 | -8.615850e-47 |
| Msa0999410 | Msa1294290 | 0.831449 | 1.658899e-55 | -8.615850e-47 |
| Msa0999410 | Msa1305510 | 0.859532 | 3.876806e-63 | -8.615850e-47 |
| Msa0999410 | Msa1307150 | 0.801663 | 8.096925e-49 | -8.615850e-47 |
| Msa0999410 | Msa1316540 | 0.801115 | 1.048297e-48 | -8.615850e-47 |
| Msa0999410 | Msa1339440 | 0.841114 | 5.783328e-58 | -8.615850e-47 |
| Msa0999410 | Msa1345420 | 0.807411 | 5.121858e-50 | -8.615850e-47 |
| Msa0999410 | Msa1378770 | 0.802211 | 6.247142e-49 | -8.615850e-47 |
| Msa0999410 | Msa1379970 | 0.849720 | 2.698554e-60 | -8.615850e-47 |
| Msa0999410 | Msa1389050 | 0.862810 | 3.892241e-64 | -8.615850e-47 |
| Msa0999410 | Msa1394890 | 0.818442 | 1.955649e-52 | -8.615850e-47 |
| Msa0999410 | Msa1406780 | 0.820390 | 7.034897e-53 | -8.615850e-47 |
| Msa0999410 | Msa1420060 | 0.830392 | 3.012925e-55 | -8.615850e-47 |
| Msa0999410 | Msa1421550 | 0.841240 | 5.359020e-58 | -8.615850e-47 |
| Msa0999410 | Msa1423460 | 0.805390 | 1.366460e-49 | -8.615850e-47 |
| Msa0999410 | Msa1424690 | 0.813739 | 2.197187e-51 | -8.615850e-47 |
| Msa0999410 | Msa1431850 | 0.830003 | 3.750842e-55 | -8.615850e-47 |
| Msa0999410 | Msa1435480 | 0.860277 | 2.310972e-63 | -8.615850e-47 |
| Msa0999410 | Msa1449940 | 0.808716 | 2.701475e-50 | -8.615850e-47 |
| Msa0999410 | Msa1458910 | 0.837404 | 5.302204e-57 | -8.615850e-47 |
| Msa0999410 | Msa1459530 | 0.806925 | 6.490449e-50 | -8.615850e-47 |
| Msa0999410 | Msa1462530 | 0.808702 | 2.720071e-50 | -8.615850e-47 |
| Msa0252770 | Msa0999410 | 0.865690 | 4.918024e-65 | -8.615850e-47 |
| Msa0289920 | Msa0999410 | 0.834219 | 3.402106e-56 | -8.615850e-47 |
| Msa0298240 | Msa0999410 | 0.834068 | 3.711161e-56 | -8.615850e-47 |
| Msa0306120 | Msa0999410 | 0.836487 | 9.093212e-57 | -8.615850e-47 |
| Msa0314630 | Msa0999410 | 0.812867 | 3.415642e-51 | -8.615850e-47 |
| Msa0322830 | Msa0999410 | 0.844012 | 9.838935e-59 | -8.615850e-47 |
| Msa0322840 | Msa0999410 | 0.859268 | 4.652891e-63 | -8.615850e-47 |
| Msa0322860 | Msa0999410 | 0.839026 | 2.026109e-57 | -8.615850e-47 |
| Msa0323610 | Msa0999410 | 0.807536 | 4.818558e-50 | -8.615850e-47 |
| Msa0329620 | Msa0999410 | 0.865269 | 6.672718e-65 | -8.615850e-47 |
| Msa0331540 | Msa0999410 | 0.821777 | 3.371601e-53 | -8.615850e-47 |
| Msa0351770 | Msa0999410 | 0.830705 | 2.526525e-55 | -8.615850e-47 |
| Msa0359250 | Msa0999410 | 0.846583 | 1.982848e-59 | -8.615850e-47 |
| Msa0487570 | Msa0999410 | 0.822575 | 2.201292e-53 | -8.615850e-47 |
| Msa0487630 | Msa0999410 | 0.804454 | 2.143372e-49 | -8.615850e-47 |
| Msa0492190 | Msa0999410 | 0.845911 | 3.021503e-59 | -8.615850e-47 |
| Msa0515950 | Msa0999410 | 0.809666 | 1.690391e-50 | -8.615850e-47 |
| Msa0520510 | Msa0999410 | 0.814373 | 1.592199e-51 | -8.615850e-47 |
| Msa0534930 | Msa0999410 | 0.814943 | 1.190867e-51 | -8.615850e-47 |
| Msa0535040 | Msa0999410 | 0.824457 | 7.988293e-54 | -8.615850e-47 |
| Msa0537920 | Msa0999410 | 0.801355 | 9.363436e-49 | -8.615850e-47 |
| Msa0575740 | Msa0999410 | 0.821539 | 3.827420e-53 | -8.615850e-47 |
| Msa0591790 | Msa0999410 | 0.837122 | 6.262066e-57 | -8.615850e-47 |
| Msa0591800 | Msa0999410 | 0.823066 | 1.691526e-53 | -8.615850e-47 |
| Msa0594090 | Msa0999410 | 0.822823 | 1.927652e-53 | -8.615850e-47 |
| Msa0843640 | Msa0999410 | 0.805577 | 1.247958e-49 | -8.615850e-47 |
| Msa0845940 | Msa0999410 | 0.825276 | 5.119829e-54 | -8.615850e-47 |
| Msa0858840 | Msa0999410 | 0.809785 | 1.593726e-50 | -8.615850e-47 |
| Msa0860280 | Msa0999410 | 0.842258 | 2.885504e-58 | -8.615850e-47 |
| Msa0862310 | Msa0999410 | 0.820234 | 7.639456e-53 | -8.615850e-47 |
| Msa0867350 | Msa0999410 | 0.814257 | 1.689548e-51 | -8.615850e-47 |
| Msa0885060 | Msa0999410 | 0.831803 | 1.357311e-55 | -8.615850e-47 |
| Msa0898730 | Msa0999410 | 0.803018 | 4.258768e-49 | -8.615850e-47 |
| Msa0899950 | Msa0999410 | 0.851935 | 6.418848e-61 | -8.615850e-47 |
| Msa0927120 | Msa0999410 | 0.824749 | 6.820103e-54 | -8.615850e-47 |
| Msa0929870 | Msa0999410 | 0.817565 | 3.086539e-52 | -8.615850e-47 |
| Msa0941820 | Msa0999410 | 0.801325 | 9.497559e-49 | -8.615850e-47 |
| Msa0944760 | Msa0999410 | 0.805848 | 1.094684e-49 | -8.615850e-47 |
| Msa0946210 | Msa0999410 | 0.805386 | 1.368599e-49 | -8.615850e-47 |
| Msa0964840 | Msa0999410 | 0.804274 | 2.337145e-49 | -8.615850e-47 |
| Msa0965310 | Msa0999410 | 0.855671 | 5.395472e-62 | -8.615850e-47 |
| Msa0973250 | Msa0999410 | 0.800406 | 1.463144e-48 | -8.615850e-47 |
| Msa0979510 | Msa0999410 | 0.813152 | 2.958571e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999410 | MtrunA17_Chr6g0485551 | 57.500 | 80 | 22 | 1 | 38 | 117 | 42 | 109 | 4.56e-20 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 21 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAACCATTTGATCATAAA+AGG | 0.244028 | 6_4:-81358071 | None:intergenic |
| TCGGACTTTCAAGTTCTTTA+CGG | 0.318095 | 6_4:-81358309 | None:intergenic |
| GACAGTCATTTGTGGAAGAT+TGG | 0.366580 | 6_4:-81357821 | None:intergenic |
| ACAGTCATTTGTGGAAGATT+GGG | 0.381276 | 6_4:-81357820 | None:intergenic |
| AGGCTAAAATGTGCGTGGTT+TGG | 0.425751 | 6_4:+81358253 | Msa0999410:CDS |
| CGGAAGCTGAAATTCGAAAG+TGG | 0.452981 | 6_4:+81358386 | Msa0999410:CDS |
| CTCTAAACCAGCAGTTGTTT+AGG | 0.457152 | 6_4:+81358233 | Msa0999410:intron |
| TTCTTCTCGACAGTCATTTG+TGG | 0.465053 | 6_4:-81357829 | None:intergenic |
| TGGTGATTTAAATCAGCATC+CGG | 0.494036 | 6_4:-81358118 | None:intergenic |
| CGAAAGTGGGCAGCTAAAGT+TGG | 0.498146 | 6_4:+81358400 | Msa0999410:CDS |
| AGCTAAAGTTGGAAAGCAGC+AGG | 0.505164 | 6_4:+81358411 | Msa0999410:CDS |
| CAGTCATTTGTGGAAGATTG+GGG | 0.526783 | 6_4:-81357819 | None:intergenic |
| TGGCAAGGCTCATTATAAAG+AGG | 0.544099 | 6_4:+81358273 | Msa0999410:CDS |
| TCGTAGTTGCATGAATAAGC+CGG | 0.600958 | 6_4:+81358099 | Msa0999410:CDS |
| GGATGCTGATTTAAATCACC+AGG | 0.601696 | 6_4:+81358120 | Msa0999410:CDS |
| CATCACATGTTACACAGACA+CGG | 0.608031 | 6_4:+81357279 | Msa0999410:CDS |
| AAAATGTGCGTGGTTTGGCA+AGG | 0.609174 | 6_4:+81358258 | Msa0999410:CDS |
| GGAAGCTGAAATTCGAAAGT+GGG | 0.616430 | 6_4:+81358387 | Msa0999410:CDS |
| CAAGGCTCATTATAAAGAGG+AGG | 0.629971 | 6_4:+81358276 | Msa0999410:CDS |
| TGTTTAGGCTAAAATGTGCG+TGG | 0.663685 | 6_4:+81358248 | Msa0999410:CDS |
| AGTCATTTGTGGAAGATTGG+GGG | 0.693821 | 6_4:-81357818 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTATAGAAAATTAATATTAA+AGG | - | chr6_4:81358029-81358048 | None:intergenic | 10.0% |
| !!! | TTCTTTTTAATTTTCTTTTT+CGG | - | chr6_4:81358331-81358350 | None:intergenic | 10.0% |
| !! | GTATAGAAAATTAATATTAA+AGG | - | chr6_4:81358029-81358048 | None:intergenic | 10.0% |
| !!! | TTCTTTTTAATTTTCTTTTT+CGG | - | chr6_4:81358331-81358350 | None:intergenic | 10.0% |
| !! | GAAAAAGAAAATTAAAAAGA+AGG | + | chr6_4:81358330-81358349 | Msa0999410:CDS | 15.0% |
| !! | GAAAAAGAAAATTAAAAAGA+AGG | + | chr6_4:81358330-81358349 | Msa0999410:CDS | 15.0% |
| !! | TTAATATTAAAGGGCTAAAA+CGG | - | chr6_4:81358019-81358038 | None:intergenic | 20.0% |
| !! | GAAAAAGAAAATTAAGAAGA+CGG | + | chr6_4:81358366-81358385 | Msa0999410:CDS | 20.0% |
| !! | TTAATATTAAAGGGCTAAAA+CGG | - | chr6_4:81358019-81358038 | None:intergenic | 20.0% |
| !! | GAAAAAGAAAATTAAGAAGA+CGG | + | chr6_4:81358366-81358385 | Msa0999410:CDS | 20.0% |
| ! | GAAATCAATCATAGATTCAA+AGG | - | chr6_4:81357582-81357601 | None:intergenic | 25.0% |
| ! | GATGATAACAATCATAAAAG+AGG | - | chr6_4:81357737-81357756 | None:intergenic | 25.0% |
| !! | TATTAATTTTCTATACCTGC+AGG | + | chr6_4:81358033-81358052 | Msa0999410:intron | 25.0% |
| !! | TGATTCCTTTTATGATCAAA+TGG | + | chr6_4:81358066-81358085 | Msa0999410:CDS | 25.0% |
| ! | ATCAACCATTTGATCATAAA+AGG | - | chr6_4:81358074-81358093 | None:intergenic | 25.0% |
| ! | GAAATCAATCATAGATTCAA+AGG | - | chr6_4:81357582-81357601 | None:intergenic | 25.0% |
| ! | GATGATAACAATCATAAAAG+AGG | - | chr6_4:81357737-81357756 | None:intergenic | 25.0% |
| !! | TATTAATTTTCTATACCTGC+AGG | + | chr6_4:81358033-81358052 | Msa0999410:intron | 25.0% |
| !! | TGATTCCTTTTATGATCAAA+TGG | + | chr6_4:81358066-81358085 | Msa0999410:CDS | 25.0% |
| ! | ATCAACCATTTGATCATAAA+AGG | - | chr6_4:81358074-81358093 | None:intergenic | 25.0% |
| !!! | GAAGATGATGATTTTTTCTG+TGG | + | chr6_4:81357317-81357336 | Msa0999410:CDS | 30.0% |
| !!! | ATTTTTTCTGTGGAAGAAAG+TGG | + | chr6_4:81357327-81357346 | Msa0999410:intron | 30.0% |
| TATGATAAACCAATTCAACG+TGG | + | chr6_4:81357401-81357420 | Msa0999410:intron | 30.0% | |
| AGGATCAAAGTGATTAAAGT+AGG | + | chr6_4:81357484-81357503 | Msa0999410:intron | 30.0% | |
| ATTCGAATATTCTTGCATTC+AGG | + | chr6_4:81357613-81357632 | Msa0999410:intron | 30.0% | |
| TTCGAATATTCTTGCATTCA+GGG | + | chr6_4:81357614-81357633 | Msa0999410:intron | 30.0% | |
| ! | ATTTTTGATGAGAAGTTTGC+CGG | - | chr6_4:81357923-81357942 | None:intergenic | 30.0% |
| TCAAAAATGATAGAGATCAG+CGG | + | chr6_4:81357935-81357954 | Msa0999410:intron | 30.0% | |
| !! | TTCAAGTTCTTTACGGTTTT+CGG | - | chr6_4:81358305-81358324 | None:intergenic | 30.0% |
| !!! | GAAGATGATGATTTTTTCTG+TGG | + | chr6_4:81357317-81357336 | Msa0999410:CDS | 30.0% |
| !!! | ATTTTTTCTGTGGAAGAAAG+TGG | + | chr6_4:81357327-81357346 | Msa0999410:intron | 30.0% |
| TATGATAAACCAATTCAACG+TGG | + | chr6_4:81357401-81357420 | Msa0999410:intron | 30.0% | |
| AGGATCAAAGTGATTAAAGT+AGG | + | chr6_4:81357484-81357503 | Msa0999410:intron | 30.0% | |
| ATTCGAATATTCTTGCATTC+AGG | + | chr6_4:81357613-81357632 | Msa0999410:intron | 30.0% | |
| TTCGAATATTCTTGCATTCA+GGG | + | chr6_4:81357614-81357633 | Msa0999410:intron | 30.0% | |
| ! | ATTTTTGATGAGAAGTTTGC+CGG | - | chr6_4:81357923-81357942 | None:intergenic | 30.0% |
| TCAAAAATGATAGAGATCAG+CGG | + | chr6_4:81357935-81357954 | Msa0999410:intron | 30.0% | |
| !! | TTCAAGTTCTTTACGGTTTT+CGG | - | chr6_4:81358305-81358324 | None:intergenic | 30.0% |
| TCGAATATTCTTGCATTCAG+GGG | + | chr6_4:81357615-81357634 | Msa0999410:intron | 35.0% | |
| AATGCTTCTTCTCTAGTCTA+GGG | + | chr6_4:81357662-81357681 | Msa0999410:intron | 35.0% | |
| ACAGTCATTTGTGGAAGATT+GGG | - | chr6_4:81357823-81357842 | None:intergenic | 35.0% | |
| AGAAATCTAAGCCAACTACT+TGG | + | chr6_4:81357848-81357867 | Msa0999410:intron | 35.0% | |
| ! | CTCTTTTTGCCAGTATATGA+GGG | - | chr6_4:81357886-81357905 | None:intergenic | 35.0% |
| ! | TCTCTTTTTGCCAGTATATG+AGG | - | chr6_4:81357887-81357906 | None:intergenic | 35.0% |
| TATACTGGCAAAAAGAGATC+TGG | + | chr6_4:81357889-81357908 | Msa0999410:intron | 35.0% | |
| ATACTGGCAAAAAGAGATCT+GGG | + | chr6_4:81357890-81357909 | Msa0999410:intron | 35.0% | |
| CAAAAATGATAGAGATCAGC+GGG | + | chr6_4:81357936-81357955 | Msa0999410:intron | 35.0% | |
| TGGTGATTTAAATCAGCATC+CGG | - | chr6_4:81358121-81358140 | None:intergenic | 35.0% | |
| TTGTTCGAAAAAAACTTGCC+TGG | - | chr6_4:81358141-81358160 | None:intergenic | 35.0% | |
| !! | ATTTTAGCCTAAACAACTGC+TGG | - | chr6_4:81358243-81358262 | None:intergenic | 35.0% |
| !! | TCGGACTTTCAAGTTCTTTA+CGG | - | chr6_4:81358312-81358331 | None:intergenic | 35.0% |
| TCGAATATTCTTGCATTCAG+GGG | + | chr6_4:81357615-81357634 | Msa0999410:intron | 35.0% | |
| AATGCTTCTTCTCTAGTCTA+GGG | + | chr6_4:81357662-81357681 | Msa0999410:intron | 35.0% | |
| ACAGTCATTTGTGGAAGATT+GGG | - | chr6_4:81357823-81357842 | None:intergenic | 35.0% | |
| AGAAATCTAAGCCAACTACT+TGG | + | chr6_4:81357848-81357867 | Msa0999410:intron | 35.0% | |
| ! | CTCTTTTTGCCAGTATATGA+GGG | - | chr6_4:81357886-81357905 | None:intergenic | 35.0% |
| ! | TCTCTTTTTGCCAGTATATG+AGG | - | chr6_4:81357887-81357906 | None:intergenic | 35.0% |
| TATACTGGCAAAAAGAGATC+TGG | + | chr6_4:81357889-81357908 | Msa0999410:intron | 35.0% | |
| ATACTGGCAAAAAGAGATCT+GGG | + | chr6_4:81357890-81357909 | Msa0999410:intron | 35.0% | |
| CAAAAATGATAGAGATCAGC+GGG | + | chr6_4:81357936-81357955 | Msa0999410:intron | 35.0% | |
| TGGTGATTTAAATCAGCATC+CGG | - | chr6_4:81358121-81358140 | None:intergenic | 35.0% | |
| TTGTTCGAAAAAAACTTGCC+TGG | - | chr6_4:81358141-81358160 | None:intergenic | 35.0% | |
| !! | ATTTTAGCCTAAACAACTGC+TGG | - | chr6_4:81358243-81358262 | None:intergenic | 35.0% |
| !! | TCGGACTTTCAAGTTCTTTA+CGG | - | chr6_4:81358312-81358331 | None:intergenic | 35.0% |
| CATCACATGTTACACAGACA+CGG | + | chr6_4:81357279-81357298 | Msa0999410:CDS | 40.0% | |
| ! | AGTCTGTTGCTGCAAGTTTT+GGG | - | chr6_4:81357365-81357384 | None:intergenic | 40.0% |
| ! | TAGTCTGTTGCTGCAAGTTT+TGG | - | chr6_4:81357366-81357385 | None:intergenic | 40.0% |
| ACTTGCAGCAACAGACTAAT+TGG | + | chr6_4:81357368-81357387 | Msa0999410:intron | 40.0% | |
| CTTGCAGCAACAGACTAATT+GGG | + | chr6_4:81357369-81357388 | Msa0999410:intron | 40.0% | |
| TGCAAAGATCCACGTTGAAT+TGG | - | chr6_4:81357413-81357432 | None:intergenic | 40.0% | |
| ! | CTTTGGGAAAATTGTCACAG+AGG | + | chr6_4:81357464-81357483 | Msa0999410:intron | 40.0% |
| ATTCTTGCATTCAGGGGTTT+AGG | + | chr6_4:81357621-81357640 | Msa0999410:intron | 40.0% | |
| TTCTTGCATTCAGGGGTTTA+GGG | + | chr6_4:81357622-81357641 | Msa0999410:intron | 40.0% | |
| CAATGCTTCTTCTCTAGTCT+AGG | + | chr6_4:81357661-81357680 | Msa0999410:intron | 40.0% | |
| AGTCATTTGTGGAAGATTGG+GGG | - | chr6_4:81357821-81357840 | None:intergenic | 40.0% | |
| CAGTCATTTGTGGAAGATTG+GGG | - | chr6_4:81357822-81357841 | None:intergenic | 40.0% | |
| GACAGTCATTTGTGGAAGAT+TGG | - | chr6_4:81357824-81357843 | None:intergenic | 40.0% | |
| TTCTTCTCGACAGTCATTTG+TGG | - | chr6_4:81357832-81357851 | None:intergenic | 40.0% | |
| !!! | ATGAGAAGTTTGCCGGTTTT+TGG | - | chr6_4:81357916-81357935 | None:intergenic | 40.0% |
| TCGTAGTTGCATGAATAAGC+CGG | + | chr6_4:81358099-81358118 | Msa0999410:CDS | 40.0% | |
| !! | GGATGCTGATTTAAATCACC+AGG | + | chr6_4:81358120-81358139 | Msa0999410:CDS | 40.0% |
| !! | CTAAACAACTGCTGGTTTAG+AGG | - | chr6_4:81358235-81358254 | None:intergenic | 40.0% |
| CTCTAAACCAGCAGTTGTTT+AGG | + | chr6_4:81358233-81358252 | Msa0999410:intron | 40.0% | |
| TGTTTAGGCTAAAATGTGCG+TGG | + | chr6_4:81358248-81358267 | Msa0999410:CDS | 40.0% | |
| TGGCAAGGCTCATTATAAAG+AGG | + | chr6_4:81358273-81358292 | Msa0999410:CDS | 40.0% | |
| CAAGGCTCATTATAAAGAGG+AGG | + | chr6_4:81358276-81358295 | Msa0999410:CDS | 40.0% | |
| GGAAGCTGAAATTCGAAAGT+GGG | + | chr6_4:81358387-81358406 | Msa0999410:CDS | 40.0% | |
| CATCACATGTTACACAGACA+CGG | + | chr6_4:81357279-81357298 | Msa0999410:CDS | 40.0% | |
| ! | AGTCTGTTGCTGCAAGTTTT+GGG | - | chr6_4:81357365-81357384 | None:intergenic | 40.0% |
| ! | TAGTCTGTTGCTGCAAGTTT+TGG | - | chr6_4:81357366-81357385 | None:intergenic | 40.0% |
| ACTTGCAGCAACAGACTAAT+TGG | + | chr6_4:81357368-81357387 | Msa0999410:intron | 40.0% | |
| CTTGCAGCAACAGACTAATT+GGG | + | chr6_4:81357369-81357388 | Msa0999410:intron | 40.0% | |
| TGCAAAGATCCACGTTGAAT+TGG | - | chr6_4:81357413-81357432 | None:intergenic | 40.0% | |
| ! | CTTTGGGAAAATTGTCACAG+AGG | + | chr6_4:81357464-81357483 | Msa0999410:intron | 40.0% |
| ATTCTTGCATTCAGGGGTTT+AGG | + | chr6_4:81357621-81357640 | Msa0999410:intron | 40.0% | |
| TTCTTGCATTCAGGGGTTTA+GGG | + | chr6_4:81357622-81357641 | Msa0999410:intron | 40.0% | |
| CAATGCTTCTTCTCTAGTCT+AGG | + | chr6_4:81357661-81357680 | Msa0999410:intron | 40.0% | |
| AGTCATTTGTGGAAGATTGG+GGG | - | chr6_4:81357821-81357840 | None:intergenic | 40.0% | |
| CAGTCATTTGTGGAAGATTG+GGG | - | chr6_4:81357822-81357841 | None:intergenic | 40.0% | |
| GACAGTCATTTGTGGAAGAT+TGG | - | chr6_4:81357824-81357843 | None:intergenic | 40.0% | |
| TTCTTCTCGACAGTCATTTG+TGG | - | chr6_4:81357832-81357851 | None:intergenic | 40.0% | |
| !!! | ATGAGAAGTTTGCCGGTTTT+TGG | - | chr6_4:81357916-81357935 | None:intergenic | 40.0% |
| TCGTAGTTGCATGAATAAGC+CGG | + | chr6_4:81358099-81358118 | Msa0999410:CDS | 40.0% | |
| !! | GGATGCTGATTTAAATCACC+AGG | + | chr6_4:81358120-81358139 | Msa0999410:CDS | 40.0% |
| !! | CTAAACAACTGCTGGTTTAG+AGG | - | chr6_4:81358235-81358254 | None:intergenic | 40.0% |
| CTCTAAACCAGCAGTTGTTT+AGG | + | chr6_4:81358233-81358252 | Msa0999410:intron | 40.0% | |
| TGTTTAGGCTAAAATGTGCG+TGG | + | chr6_4:81358248-81358267 | Msa0999410:CDS | 40.0% | |
| TGGCAAGGCTCATTATAAAG+AGG | + | chr6_4:81358273-81358292 | Msa0999410:CDS | 40.0% | |
| CAAGGCTCATTATAAAGAGG+AGG | + | chr6_4:81358276-81358295 | Msa0999410:CDS | 40.0% | |
| GGAAGCTGAAATTCGAAAGT+GGG | + | chr6_4:81358387-81358406 | Msa0999410:CDS | 40.0% | |
| ! | GACACGGTTTTCGAATACTG+AGG | + | chr6_4:81357295-81357314 | Msa0999410:CDS | 45.0% |
| TTCAACGTGGATCTTTGCAG+AGG | + | chr6_4:81357414-81357433 | Msa0999410:intron | 45.0% | |
| TCAACGTGGATCTTTGCAGA+GGG | + | chr6_4:81357415-81357434 | Msa0999410:intron | 45.0% | |
| ! | TTTTCCCAAAGCGAGATGCT+GGG | - | chr6_4:81357455-81357474 | None:intergenic | 45.0% |
| ! | ATTTTCCCAAAGCGAGATGC+TGG | - | chr6_4:81357456-81357475 | None:intergenic | 45.0% |
| AAGAGATCTGGGCCAAAAAC+CGG | + | chr6_4:81357901-81357920 | Msa0999410:intron | 45.0% | |
| AATCAAACAACGAAGCCTGC+AGG | - | chr6_4:81358051-81358070 | None:intergenic | 45.0% | |
| AGGCTAAAATGTGCGTGGTT+TGG | + | chr6_4:81358253-81358272 | Msa0999410:CDS | 45.0% | |
| ! | AAAATGTGCGTGGTTTGGCA+AGG | + | chr6_4:81358258-81358277 | Msa0999410:CDS | 45.0% |
| CGGAAGCTGAAATTCGAAAG+TGG | + | chr6_4:81358386-81358405 | Msa0999410:CDS | 45.0% | |
| AGCTAAAGTTGGAAAGCAGC+AGG | + | chr6_4:81358411-81358430 | Msa0999410:CDS | 45.0% | |
| ! | GACACGGTTTTCGAATACTG+AGG | + | chr6_4:81357295-81357314 | Msa0999410:CDS | 45.0% |
| TTCAACGTGGATCTTTGCAG+AGG | + | chr6_4:81357414-81357433 | Msa0999410:intron | 45.0% | |
| TCAACGTGGATCTTTGCAGA+GGG | + | chr6_4:81357415-81357434 | Msa0999410:intron | 45.0% | |
| ! | TTTTCCCAAAGCGAGATGCT+GGG | - | chr6_4:81357455-81357474 | None:intergenic | 45.0% |
| ! | ATTTTCCCAAAGCGAGATGC+TGG | - | chr6_4:81357456-81357475 | None:intergenic | 45.0% |
| AAGAGATCTGGGCCAAAAAC+CGG | + | chr6_4:81357901-81357920 | Msa0999410:intron | 45.0% | |
| AATCAAACAACGAAGCCTGC+AGG | - | chr6_4:81358051-81358070 | None:intergenic | 45.0% | |
| AGGCTAAAATGTGCGTGGTT+TGG | + | chr6_4:81358253-81358272 | Msa0999410:CDS | 45.0% | |
| ! | AAAATGTGCGTGGTTTGGCA+AGG | + | chr6_4:81358258-81358277 | Msa0999410:CDS | 45.0% |
| CGGAAGCTGAAATTCGAAAG+TGG | + | chr6_4:81358386-81358405 | Msa0999410:CDS | 45.0% | |
| AGCTAAAGTTGGAAAGCAGC+AGG | + | chr6_4:81358411-81358430 | Msa0999410:CDS | 45.0% | |
| !! | TATAGAAAATTAATATTAAA+GGG | - | chr6_4:81358028-81358047 | None:intergenic | 5.0% |
| !! | TATAGAAAATTAATATTAAA+GGG | - | chr6_4:81358028-81358047 | None:intergenic | 5.0% |
| AGCGAGATGCTGGGACTAAT+TGG | - | chr6_4:81357446-81357465 | None:intergenic | 50.0% | |
| TTAGTCCCAGCATCTCGCTT+TGG | + | chr6_4:81357447-81357466 | Msa0999410:intron | 50.0% | |
| TAGTCCCAGCATCTCGCTTT+GGG | + | chr6_4:81357448-81357467 | Msa0999410:intron | 50.0% | |
| CCTGCGATGATCCAAGTAGT+TGG | - | chr6_4:81357862-81357881 | None:intergenic | 50.0% | |
| CCAACTACTTGGATCATCGC+AGG | + | chr6_4:81357859-81357878 | Msa0999410:intron | 50.0% | |
| ATCGCAGGACCCTCATATAC+TGG | + | chr6_4:81357874-81357893 | Msa0999410:intron | 50.0% | |
| CGAAAGTGGGCAGCTAAAGT+TGG | + | chr6_4:81358400-81358419 | Msa0999410:CDS | 50.0% | |
| AGCGAGATGCTGGGACTAAT+TGG | - | chr6_4:81357446-81357465 | None:intergenic | 50.0% | |
| TTAGTCCCAGCATCTCGCTT+TGG | + | chr6_4:81357447-81357466 | Msa0999410:intron | 50.0% | |
| TAGTCCCAGCATCTCGCTTT+GGG | + | chr6_4:81357448-81357467 | Msa0999410:intron | 50.0% | |
| CCTGCGATGATCCAAGTAGT+TGG | - | chr6_4:81357862-81357881 | None:intergenic | 50.0% | |
| CCAACTACTTGGATCATCGC+AGG | + | chr6_4:81357859-81357878 | Msa0999410:intron | 50.0% | |
| ATCGCAGGACCCTCATATAC+TGG | + | chr6_4:81357874-81357893 | Msa0999410:intron | 50.0% | |
| CGAAAGTGGGCAGCTAAAGT+TGG | + | chr6_4:81358400-81358419 | Msa0999410:CDS | 50.0% | |
| GGGAGAGAGTTAAGCTGCAG+AGG | - | chr6_4:81357801-81357820 | None:intergenic | 55.0% | |
| GGGAGAGAGTTAAGCTGCAG+AGG | - | chr6_4:81357801-81357820 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 81357272 | 81358441 | 81357272 | ID=Msa0999410;Name=Msa0999410 |
| chr6_4 | mRNA | 81357272 | 81358441 | 81357272 | ID=Msa0999410-mRNA-1;Parent=Msa0999410;Name=Msa0999410-mRNA-1;_AED=0.37;_eAED=0.42;_QI=0|0|0|1|0|0|4|0|142 |
| chr6_4 | exon | 81357272 | 81357345 | 81357272 | ID=Msa0999410-mRNA-1:exon:15544;Parent=Msa0999410-mRNA-1 |
| chr6_4 | exon | 81357807 | 81357840 | 81357807 | ID=Msa0999410-mRNA-1:exon:15545;Parent=Msa0999410-mRNA-1 |
| chr6_4 | exon | 81358055 | 81358174 | 81358055 | ID=Msa0999410-mRNA-1:exon:15546;Parent=Msa0999410-mRNA-1 |
| chr6_4 | exon | 81358244 | 81358441 | 81358244 | ID=Msa0999410-mRNA-1:exon:15547;Parent=Msa0999410-mRNA-1 |
| chr6_4 | CDS | 81357272 | 81357345 | 81357272 | ID=Msa0999410-mRNA-1:cds;Parent=Msa0999410-mRNA-1 |
| chr6_4 | CDS | 81357807 | 81357840 | 81357807 | ID=Msa0999410-mRNA-1:cds;Parent=Msa0999410-mRNA-1 |
| chr6_4 | CDS | 81358055 | 81358174 | 81358055 | ID=Msa0999410-mRNA-1:cds;Parent=Msa0999410-mRNA-1 |
| chr6_4 | CDS | 81358244 | 81358441 | 81358244 | ID=Msa0999410-mRNA-1:cds;Parent=Msa0999410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
