Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1301620 | G7JGN5 | 96.667 | 150 | 5 | 0 | 1 | 150 | 1 | 150 | 1.31e-101 | 297 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002760 | Msa1301620 | 0.851873 | 6.684405e-61 | -8.615850e-47 |
| Msa0646710 | Msa1301620 | 0.820245 | 7.596696e-53 | -8.615850e-47 |
| Msa0647110 | Msa1301620 | 0.815431 | 9.275557e-52 | -8.615850e-47 |
| Msa0704570 | Msa1301620 | 0.801710 | 7.920033e-49 | -8.615850e-47 |
| Msa0149070 | Msa1301620 | 0.801579 | 8.426141e-49 | -8.615850e-47 |
| Msa0152380 | Msa1301620 | 0.805447 | 1.328836e-49 | -8.615850e-47 |
| Msa1228950 | Msa1301620 | 0.806796 | 6.911789e-50 | -8.615850e-47 |
| Msa1301620 | Msa1324940 | 0.802297 | 5.997498e-49 | -8.615850e-47 |
| Msa1301620 | Msa1339250 | 0.800631 | 1.316182e-48 | -8.615850e-47 |
| Msa1301620 | Msa1367810 | 0.801442 | 8.985743e-49 | -8.615850e-47 |
| Msa1301620 | Msa1373340 | 0.814889 | 1.224276e-51 | -8.615850e-47 |
| Msa1301620 | Msa1410170 | 0.804005 | 2.658774e-49 | -8.615850e-47 |
| Msa1301620 | Msa1426520 | 0.842387 | 2.667860e-58 | -8.615850e-47 |
| Msa1301620 | Msa1439800 | 0.803237 | 3.836252e-49 | -8.615850e-47 |
| Msa0370180 | Msa1301620 | 0.805022 | 1.631456e-49 | -8.615850e-47 |
| Msa0399180 | Msa1301620 | 0.801401 | 9.164198e-49 | -8.615850e-47 |
| Msa1090230 | Msa1301620 | 0.801333 | 9.461426e-49 | -8.615850e-47 |
| Msa0304870 | Msa1301620 | 0.807614 | 4.637308e-50 | -8.615850e-47 |
| Msa0341260 | Msa1301620 | 0.808868 | 2.506882e-50 | -8.615850e-47 |
| Msa1215800 | Msa1301620 | 0.850830 | 1.317600e-60 | -8.615850e-47 |
| Msa0550280 | Msa1301620 | 0.814067 | 1.860191e-51 | -8.615850e-47 |
| Msa0910650 | Msa1301620 | 0.805578 | 1.247837e-49 | -8.615850e-47 |
| Msa0959970 | Msa1301620 | 0.808177 | 3.521239e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1301620 | MtrunA17_Chr4g0065091 | 96.667 | 150 | 5 | 0 | 1 | 150 | 1 | 150 | 2.53e-105 | 297 |
| Msa1301620 | MtrunA17_Chr2g0304701 | 48.252 | 143 | 58 | 6 | 18 | 150 | 17 | 153 | 3.80e-30 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 31 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACAAAAGTTCCTTATATT+TGG | 0.128182 | 8_3:+63747191 | Msa1301620:three_prime_UTR |
| AGCTTAATTGAGTATAAAAT+TGG | 0.220335 | 8_3:-63745832 | None:intergenic |
| ATTATATTTATCCAAATATA+AGG | 0.261298 | 8_3:-63747202 | None:intergenic |
| TAAAATGTGTGATCTTCTTC+AGG | 0.276675 | 8_3:-63745875 | None:intergenic |
| GTGGCTCACACCTCAGTAAA+TGG | 0.325930 | 8_3:+63746995 | Msa1301620:CDS |
| TAGACTCAATTAATTGTGTA+TGG | 0.388334 | 8_3:-63747152 | None:intergenic |
| CTGCAGGAAATATAAAGAAT+AGG | 0.441652 | 8_3:+63746803 | Msa1301620:intron |
| AAAATGTGTGATCTTCTTCA+GGG | 0.445511 | 8_3:-63745874 | None:intergenic |
| CTAGAAATGTGAATGTGAAT+GGG | 0.472633 | 8_3:+63747023 | Msa1301620:CDS |
| GTGTGTGCAGGGATACGTTT+GGG | 0.472885 | 8_3:+63746083 | Msa1301620:intron |
| GTTATGTCTACAAGGTCCTC+AGG | 0.481183 | 8_3:-63747094 | None:intergenic |
| ACTAGAAATGTGAATGTGAA+TGG | 0.484726 | 8_3:+63747022 | Msa1301620:CDS |
| GCAGGGATACGTTTGGGAAA+AGG | 0.491954 | 8_3:+63746089 | Msa1301620:intron |
| TGTGTGTGCAGGGATACGTT+TGG | 0.497727 | 8_3:+63746082 | Msa1301620:intron |
| TACAACTAAATCCTTGTCAA+AGG | 0.499214 | 8_3:+63746849 | Msa1301620:CDS |
| CCATCTCAGTTATGTCTACA+AGG | 0.517334 | 8_3:-63747102 | None:intergenic |
| CCTTGTAGACATAACTGAGA+TGG | 0.558484 | 8_3:+63747102 | Msa1301620:CDS |
| TTTAGTTGTAGAAATTGAAG+TGG | 0.566395 | 8_3:-63746836 | None:intergenic |
| TGTGAAGAACAGTGAGGATG+TGG | 0.569958 | 8_3:+63746976 | Msa1301620:CDS |
| ATACACAATTAATTGAGTCT+AGG | 0.573043 | 8_3:+63747154 | Msa1301620:exon |
| AGAGAGACTGCTACACAAGA+AGG | 0.574354 | 8_3:-63745951 | None:intergenic |
| AGACTCAATTAATTGTGTAT+GGG | 0.578163 | 8_3:-63747151 | None:intergenic |
| AAGAAGTAACACTGATTCTG+AGG | 0.585024 | 8_3:+63746276 | Msa1301620:CDS |
| AGATGGATTATTCACCAGCT+AGG | 0.588549 | 8_3:+63747119 | Msa1301620:CDS |
| TCTAGTATTGCCATTTACTG+AGG | 0.596383 | 8_3:-63747005 | None:intergenic |
| TTATAAACCAACCTTTGACA+AGG | 0.606206 | 8_3:-63746860 | None:intergenic |
| TTATGTCTACAAGGTCCTCA+GGG | 0.619907 | 8_3:-63747093 | None:intergenic |
| TAGAAATGTGAATGTGAATG+GGG | 0.652177 | 8_3:+63747024 | Msa1301620:CDS |
| GAATGTGAATGGGGAAGCAA+AGG | 0.660105 | 8_3:+63747033 | Msa1301620:CDS |
| TACTTCTAATTATCTCCCTG+AGG | 0.676211 | 8_3:+63747078 | Msa1301620:CDS |
| ACAGAATGTGAAGAACAGTG+AGG | 0.846322 | 8_3:+63746970 | Msa1301620:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATATTTATCCAAATATA+AGG | - | chr8_3:63747205-63747224 | None:intergenic | 10.0% |
| !! | ATTATATTTATCCAAATATA+AGG | - | chr8_3:63747205-63747224 | None:intergenic | 10.0% |
| !! | TAATTAAATTTCTTTCATGA+TGG | - | chr8_3:63746711-63746730 | None:intergenic | 15.0% |
| !! | ATCATGAAAGAAATTTAATT+AGG | + | chr8_3:63746710-63746729 | Msa1301620:intron | 15.0% |
| !! | TAATTAAATTTCTTTCATGA+TGG | - | chr8_3:63746711-63746730 | None:intergenic | 15.0% |
| !! | ATCATGAAAGAAATTTAATT+AGG | + | chr8_3:63746710-63746729 | Msa1301620:intron | 15.0% |
| !!! | AAATTGGAAATTTTTAAGAG+TGG | - | chr8_3:63745819-63745838 | None:intergenic | 20.0% |
| !! | AGCTTAATTGAGTATAAAAT+TGG | - | chr8_3:63745835-63745854 | None:intergenic | 20.0% |
| !!! | TTTTAAAAAAATTAGGGTAG+TGG | + | chr8_3:63746481-63746500 | Msa1301620:intron | 20.0% |
| !! | TGGAAAATTATTATCTAAAG+TGG | + | chr8_3:63746501-63746520 | Msa1301620:intron | 20.0% |
| !! | TCAAATCTACAATTGTAAAA+TGG | - | chr8_3:63746536-63746555 | None:intergenic | 20.0% |
| !!! | AAATTGGAAATTTTTAAGAG+TGG | - | chr8_3:63745819-63745838 | None:intergenic | 20.0% |
| !! | AGCTTAATTGAGTATAAAAT+TGG | - | chr8_3:63745835-63745854 | None:intergenic | 20.0% |
| !!! | TTTTAAAAAAATTAGGGTAG+TGG | + | chr8_3:63746481-63746500 | Msa1301620:intron | 20.0% |
| !! | TGGAAAATTATTATCTAAAG+TGG | + | chr8_3:63746501-63746520 | Msa1301620:intron | 20.0% |
| !! | TCAAATCTACAATTGTAAAA+TGG | - | chr8_3:63746536-63746555 | None:intergenic | 20.0% |
| !! | AGAAGATCACACATTTTATT+TGG | + | chr8_3:63745880-63745899 | Msa1301620:five_prime_UTR | 25.0% |
| !! | ATTTACCTTGAGTTTTTGTA+AGG | - | chr8_3:63745995-63746014 | None:intergenic | 25.0% |
| ! | AAAAAAGGAAGAAAAACTTG+TGG | - | chr8_3:63746459-63746478 | None:intergenic | 25.0% |
| ! | ATATGTCCTTGTAATTTCAA+AGG | - | chr8_3:63746566-63746585 | None:intergenic | 25.0% |
| !! | TTGCATAGTCATAAGTTTTT+GGG | - | chr8_3:63746616-63746635 | None:intergenic | 25.0% |
| !! | TTTGCATAGTCATAAGTTTT+TGG | - | chr8_3:63746617-63746636 | None:intergenic | 25.0% |
| !!! | AAATGTTTTTATTTTGCTGC+AGG | + | chr8_3:63746787-63746806 | Msa1301620:intron | 25.0% |
| ! | TTTAGTTGTAGAAATTGAAG+TGG | - | chr8_3:63746839-63746858 | None:intergenic | 25.0% |
| ! | AGACTCAATTAATTGTGTAT+GGG | - | chr8_3:63747154-63747173 | None:intergenic | 25.0% |
| ! | TAGACTCAATTAATTGTGTA+TGG | - | chr8_3:63747155-63747174 | None:intergenic | 25.0% |
| ! | ATACACAATTAATTGAGTCT+AGG | + | chr8_3:63747154-63747173 | Msa1301620:exon | 25.0% |
| ! | AGACAAAAGTTCCTTATATT+TGG | + | chr8_3:63747191-63747210 | Msa1301620:three_prime_UTR | 25.0% |
| !!! | AGAAATGCTGCAATTTTTTA+AGG | + | chr8_3:63747255-63747274 | Msa1301620:three_prime_UTR | 25.0% |
| !! | AGAAGATCACACATTTTATT+TGG | + | chr8_3:63745880-63745899 | Msa1301620:five_prime_UTR | 25.0% |
| !! | ATTTACCTTGAGTTTTTGTA+AGG | - | chr8_3:63745995-63746014 | None:intergenic | 25.0% |
| ! | AAAAAAGGAAGAAAAACTTG+TGG | - | chr8_3:63746459-63746478 | None:intergenic | 25.0% |
| ! | ATATGTCCTTGTAATTTCAA+AGG | - | chr8_3:63746566-63746585 | None:intergenic | 25.0% |
| !! | TTGCATAGTCATAAGTTTTT+GGG | - | chr8_3:63746616-63746635 | None:intergenic | 25.0% |
| !! | TTTGCATAGTCATAAGTTTT+TGG | - | chr8_3:63746617-63746636 | None:intergenic | 25.0% |
| !!! | AAATGTTTTTATTTTGCTGC+AGG | + | chr8_3:63746787-63746806 | Msa1301620:intron | 25.0% |
| ! | TTTAGTTGTAGAAATTGAAG+TGG | - | chr8_3:63746839-63746858 | None:intergenic | 25.0% |
| ! | AGACTCAATTAATTGTGTAT+GGG | - | chr8_3:63747154-63747173 | None:intergenic | 25.0% |
| ! | TAGACTCAATTAATTGTGTA+TGG | - | chr8_3:63747155-63747174 | None:intergenic | 25.0% |
| ! | ATACACAATTAATTGAGTCT+AGG | + | chr8_3:63747154-63747173 | Msa1301620:exon | 25.0% |
| ! | AGACAAAAGTTCCTTATATT+TGG | + | chr8_3:63747191-63747210 | Msa1301620:three_prime_UTR | 25.0% |
| !!! | AGAAATGCTGCAATTTTTTA+AGG | + | chr8_3:63747255-63747274 | Msa1301620:three_prime_UTR | 25.0% |
| AAAATGTGTGATCTTCTTCA+GGG | - | chr8_3:63745877-63745896 | None:intergenic | 30.0% | |
| TAAAATGTGTGATCTTCTTC+AGG | - | chr8_3:63745878-63745897 | None:intergenic | 30.0% | |
| !! | CATTTTTGAAGGAAAATCTG+TGG | - | chr8_3:63745928-63745947 | None:intergenic | 30.0% |
| ! | CAGATTTTCCTTCAAAAATG+AGG | + | chr8_3:63745928-63745947 | Msa1301620:exon | 30.0% |
| GGAAGATTAGAAATGTAACA+AGG | - | chr8_3:63746057-63746076 | None:intergenic | 30.0% | |
| ! | TGCATGCTTTCACATTTTTA+TGG | + | chr8_3:63746193-63746212 | Msa1301620:intron | 30.0% |
| !!! | AGTGTTACTTCTTTTCAACA+AGG | - | chr8_3:63746269-63746288 | None:intergenic | 30.0% |
| TAGTAATCTTCATGAATCTG+TGG | - | chr8_3:63746391-63746410 | None:intergenic | 30.0% | |
| CAGATTCATGAAGATTACTA+TGG | + | chr8_3:63746391-63746410 | Msa1301620:intron | 30.0% | |
| TGTGGACTTGAAAAAACTAA+TGG | - | chr8_3:63746441-63746460 | None:intergenic | 30.0% | |
| TATGACTATGCAAAAATGCA+AGG | + | chr8_3:63746623-63746642 | Msa1301620:intron | 30.0% | |
| CTGCAGGAAATATAAAGAAT+AGG | + | chr8_3:63746803-63746822 | Msa1301620:intron | 30.0% | |
| TACAACTAAATCCTTGTCAA+AGG | + | chr8_3:63746849-63746868 | Msa1301620:CDS | 30.0% | |
| TTATAAACCAACCTTTGACA+AGG | - | chr8_3:63746863-63746882 | None:intergenic | 30.0% | |
| ACTAGAAATGTGAATGTGAA+TGG | + | chr8_3:63747022-63747041 | Msa1301620:CDS | 30.0% | |
| CTAGAAATGTGAATGTGAAT+GGG | + | chr8_3:63747023-63747042 | Msa1301620:CDS | 30.0% | |
| TAGAAATGTGAATGTGAATG+GGG | + | chr8_3:63747024-63747043 | Msa1301620:CDS | 30.0% | |
| !!! | CTGCAATTTTTTAAGGCTTA+GGG | + | chr8_3:63747262-63747281 | Msa1301620:three_prime_UTR | 30.0% |
| AAAATGTGTGATCTTCTTCA+GGG | - | chr8_3:63745877-63745896 | None:intergenic | 30.0% | |
| TAAAATGTGTGATCTTCTTC+AGG | - | chr8_3:63745878-63745897 | None:intergenic | 30.0% | |
| !! | CATTTTTGAAGGAAAATCTG+TGG | - | chr8_3:63745928-63745947 | None:intergenic | 30.0% |
| ! | CAGATTTTCCTTCAAAAATG+AGG | + | chr8_3:63745928-63745947 | Msa1301620:exon | 30.0% |
| GGAAGATTAGAAATGTAACA+AGG | - | chr8_3:63746057-63746076 | None:intergenic | 30.0% | |
| ! | TGCATGCTTTCACATTTTTA+TGG | + | chr8_3:63746193-63746212 | Msa1301620:intron | 30.0% |
| !!! | AGTGTTACTTCTTTTCAACA+AGG | - | chr8_3:63746269-63746288 | None:intergenic | 30.0% |
| TAGTAATCTTCATGAATCTG+TGG | - | chr8_3:63746391-63746410 | None:intergenic | 30.0% | |
| CAGATTCATGAAGATTACTA+TGG | + | chr8_3:63746391-63746410 | Msa1301620:intron | 30.0% | |
| TGTGGACTTGAAAAAACTAA+TGG | - | chr8_3:63746441-63746460 | None:intergenic | 30.0% | |
| TATGACTATGCAAAAATGCA+AGG | + | chr8_3:63746623-63746642 | Msa1301620:intron | 30.0% | |
| CTGCAGGAAATATAAAGAAT+AGG | + | chr8_3:63746803-63746822 | Msa1301620:intron | 30.0% | |
| TACAACTAAATCCTTGTCAA+AGG | + | chr8_3:63746849-63746868 | Msa1301620:CDS | 30.0% | |
| TTATAAACCAACCTTTGACA+AGG | - | chr8_3:63746863-63746882 | None:intergenic | 30.0% | |
| ACTAGAAATGTGAATGTGAA+TGG | + | chr8_3:63747022-63747041 | Msa1301620:CDS | 30.0% | |
| CTAGAAATGTGAATGTGAAT+GGG | + | chr8_3:63747023-63747042 | Msa1301620:CDS | 30.0% | |
| TAGAAATGTGAATGTGAATG+GGG | + | chr8_3:63747024-63747043 | Msa1301620:CDS | 30.0% | |
| !!! | CTGCAATTTTTTAAGGCTTA+GGG | + | chr8_3:63747262-63747281 | Msa1301620:three_prime_UTR | 30.0% |
| CTTCTCCTTACAAAAACTCA+AGG | + | chr8_3:63745987-63746006 | Msa1301620:CDS | 35.0% | |
| GAGCAACAAAAACAACATGT+AGG | + | chr8_3:63746125-63746144 | Msa1301620:intron | 35.0% | |
| !! | AAGAAGTAACACTGATTCTG+AGG | + | chr8_3:63746276-63746295 | Msa1301620:CDS | 35.0% |
| AATGACCAACAAAAATGCAC+AGG | + | chr8_3:63746313-63746332 | Msa1301620:CDS | 35.0% | |
| !! | CTTTAGAAGCTGTTTTCTTC+AGG | - | chr8_3:63746342-63746361 | None:intergenic | 35.0% |
| ! | TAACTGGTTGTGTGATTTTC+TGG | - | chr8_3:63746368-63746387 | None:intergenic | 35.0% |
| ! | ATTATCTAAAGTGGCGCTAA+TGG | + | chr8_3:63746510-63746529 | Msa1301620:intron | 35.0% |
| !! | CTTCGTCCTTTGAAATTACA+AGG | + | chr8_3:63746557-63746576 | Msa1301620:intron | 35.0% |
| GACAAAATTTGTCAGCTTAG+TGG | - | chr8_3:63746594-63746613 | None:intergenic | 35.0% | |
| !! | AAGGCTTTATTCTCTTCTCT+TGG | + | chr8_3:63746642-63746661 | Msa1301620:intron | 35.0% |
| TATTCTCTTCTCTTGGTTTC+TGG | + | chr8_3:63746649-63746668 | Msa1301620:intron | 35.0% | |
| ACTAAATCCTTGTCAAAGGT+TGG | + | chr8_3:63746853-63746872 | Msa1301620:intron | 35.0% | |
| ! | TCTAGTATTGCCATTTACTG+AGG | - | chr8_3:63747008-63747027 | None:intergenic | 35.0% |
| TACTTCTAATTATCTCCCTG+AGG | + | chr8_3:63747078-63747097 | Msa1301620:CDS | 35.0% | |
| !!! | GCTGCAATTTTTTAAGGCTT+AGG | + | chr8_3:63747261-63747280 | Msa1301620:three_prime_UTR | 35.0% |
| CTTCTCCTTACAAAAACTCA+AGG | + | chr8_3:63745987-63746006 | Msa1301620:CDS | 35.0% | |
| GAGCAACAAAAACAACATGT+AGG | + | chr8_3:63746125-63746144 | Msa1301620:intron | 35.0% | |
| !! | AAGAAGTAACACTGATTCTG+AGG | + | chr8_3:63746276-63746295 | Msa1301620:CDS | 35.0% |
| AATGACCAACAAAAATGCAC+AGG | + | chr8_3:63746313-63746332 | Msa1301620:CDS | 35.0% | |
| !! | CTTTAGAAGCTGTTTTCTTC+AGG | - | chr8_3:63746342-63746361 | None:intergenic | 35.0% |
| ! | TAACTGGTTGTGTGATTTTC+TGG | - | chr8_3:63746368-63746387 | None:intergenic | 35.0% |
| ! | ATTATCTAAAGTGGCGCTAA+TGG | + | chr8_3:63746510-63746529 | Msa1301620:intron | 35.0% |
| !! | CTTCGTCCTTTGAAATTACA+AGG | + | chr8_3:63746557-63746576 | Msa1301620:intron | 35.0% |
| GACAAAATTTGTCAGCTTAG+TGG | - | chr8_3:63746594-63746613 | None:intergenic | 35.0% | |
| !! | AAGGCTTTATTCTCTTCTCT+TGG | + | chr8_3:63746642-63746661 | Msa1301620:intron | 35.0% |
| TATTCTCTTCTCTTGGTTTC+TGG | + | chr8_3:63746649-63746668 | Msa1301620:intron | 35.0% | |
| ACTAAATCCTTGTCAAAGGT+TGG | + | chr8_3:63746853-63746872 | Msa1301620:intron | 35.0% | |
| ! | TCTAGTATTGCCATTTACTG+AGG | - | chr8_3:63747008-63747027 | None:intergenic | 35.0% |
| TACTTCTAATTATCTCCCTG+AGG | + | chr8_3:63747078-63747097 | Msa1301620:CDS | 35.0% | |
| !!! | GCTGCAATTTTTTAAGGCTT+AGG | + | chr8_3:63747261-63747280 | Msa1301620:three_prime_UTR | 35.0% |
| !!! | TTCAGGGTTTTGTTCTTGCA+AGG | - | chr8_3:63745861-63745880 | None:intergenic | 40.0% |
| !! | CAAGAAGGCCTCATTTTTGA+AGG | - | chr8_3:63745939-63745958 | None:intergenic | 40.0% |
| !!! | TCTTCCTTTTTTGTGTGTGC+AGG | + | chr8_3:63746071-63746090 | Msa1301620:intron | 40.0% |
| !!! | CTTCCTTTTTTGTGTGTGCA+GGG | + | chr8_3:63746072-63746091 | Msa1301620:intron | 40.0% |
| TATCCCTGCACACACAAAAA+AGG | - | chr8_3:63746078-63746097 | None:intergenic | 40.0% | |
| !! | AAGTTCACTTTTCTGACTGC+AGG | + | chr8_3:63746228-63746247 | Msa1301620:intron | 40.0% |
| CTTCATGAATCTGTGGTAAC+TGG | - | chr8_3:63746384-63746403 | None:intergenic | 40.0% | |
| ACAGAATGTGAAGAACAGTG+AGG | + | chr8_3:63746970-63746989 | Msa1301620:intron | 40.0% | |
| TTATGTCTACAAGGTCCTCA+GGG | - | chr8_3:63747096-63747115 | None:intergenic | 40.0% | |
| CCATCTCAGTTATGTCTACA+AGG | - | chr8_3:63747105-63747124 | None:intergenic | 40.0% | |
| CCTTGTAGACATAACTGAGA+TGG | + | chr8_3:63747102-63747121 | Msa1301620:CDS | 40.0% | |
| !! | AGATGGATTATTCACCAGCT+AGG | + | chr8_3:63747119-63747138 | Msa1301620:CDS | 40.0% |
| !!! | TTCAGGGTTTTGTTCTTGCA+AGG | - | chr8_3:63745861-63745880 | None:intergenic | 40.0% |
| !! | CAAGAAGGCCTCATTTTTGA+AGG | - | chr8_3:63745939-63745958 | None:intergenic | 40.0% |
| !!! | TCTTCCTTTTTTGTGTGTGC+AGG | + | chr8_3:63746071-63746090 | Msa1301620:intron | 40.0% |
| !!! | CTTCCTTTTTTGTGTGTGCA+GGG | + | chr8_3:63746072-63746091 | Msa1301620:intron | 40.0% |
| TATCCCTGCACACACAAAAA+AGG | - | chr8_3:63746078-63746097 | None:intergenic | 40.0% | |
| !! | AAGTTCACTTTTCTGACTGC+AGG | + | chr8_3:63746228-63746247 | Msa1301620:intron | 40.0% |
| CTTCATGAATCTGTGGTAAC+TGG | - | chr8_3:63746384-63746403 | None:intergenic | 40.0% | |
| ACAGAATGTGAAGAACAGTG+AGG | + | chr8_3:63746970-63746989 | Msa1301620:intron | 40.0% | |
| TTATGTCTACAAGGTCCTCA+GGG | - | chr8_3:63747096-63747115 | None:intergenic | 40.0% | |
| CCATCTCAGTTATGTCTACA+AGG | - | chr8_3:63747105-63747124 | None:intergenic | 40.0% | |
| CCTTGTAGACATAACTGAGA+TGG | + | chr8_3:63747102-63747121 | Msa1301620:CDS | 40.0% | |
| !! | AGATGGATTATTCACCAGCT+AGG | + | chr8_3:63747119-63747138 | Msa1301620:CDS | 40.0% |
| AGAGAGACTGCTACACAAGA+AGG | - | chr8_3:63745954-63745973 | None:intergenic | 45.0% | |
| ! | ACTTTTCTGACTGCAGGATG+AGG | + | chr8_3:63746234-63746253 | Msa1301620:intron | 45.0% |
| ! | GGCTACCTGTGCATTTTTGT+TGG | - | chr8_3:63746321-63746340 | None:intergenic | 45.0% |
| GACCTAGACGACATAGATCT+AGG | + | chr8_3:63746413-63746432 | Msa1301620:intron | 45.0% | |
| TGCCTAGATCTATGTCGTCT+AGG | - | chr8_3:63746418-63746437 | None:intergenic | 45.0% | |
| TGTGAAGAACAGTGAGGATG+TGG | + | chr8_3:63746976-63746995 | Msa1301620:CDS | 45.0% | |
| GAATGTGAATGGGGAAGCAA+AGG | + | chr8_3:63747033-63747052 | Msa1301620:CDS | 45.0% | |
| GTTATGTCTACAAGGTCCTC+AGG | - | chr8_3:63747097-63747116 | None:intergenic | 45.0% | |
| !! | ATGGGAGACTTTTTCCTAGC+TGG | - | chr8_3:63747136-63747155 | None:intergenic | 45.0% |
| AGAGAGACTGCTACACAAGA+AGG | - | chr8_3:63745954-63745973 | None:intergenic | 45.0% | |
| ! | ACTTTTCTGACTGCAGGATG+AGG | + | chr8_3:63746234-63746253 | Msa1301620:intron | 45.0% |
| ! | GGCTACCTGTGCATTTTTGT+TGG | - | chr8_3:63746321-63746340 | None:intergenic | 45.0% |
| GACCTAGACGACATAGATCT+AGG | + | chr8_3:63746413-63746432 | Msa1301620:intron | 45.0% | |
| TGCCTAGATCTATGTCGTCT+AGG | - | chr8_3:63746418-63746437 | None:intergenic | 45.0% | |
| TGTGAAGAACAGTGAGGATG+TGG | + | chr8_3:63746976-63746995 | Msa1301620:CDS | 45.0% | |
| GAATGTGAATGGGGAAGCAA+AGG | + | chr8_3:63747033-63747052 | Msa1301620:CDS | 45.0% | |
| GTTATGTCTACAAGGTCCTC+AGG | - | chr8_3:63747097-63747116 | None:intergenic | 45.0% | |
| !! | ATGGGAGACTTTTTCCTAGC+TGG | - | chr8_3:63747136-63747155 | None:intergenic | 45.0% |
| !!! | AATTTTTTTAAAAGAAAAAA+AGG | - | chr8_3:63746474-63746493 | None:intergenic | 5.0% |
| !!! | TTTTTTCTTTTAAAAAAATT+AGG | + | chr8_3:63746474-63746493 | Msa1301620:intron | 5.0% |
| !!! | TTTTTCTTTTAAAAAAATTA+GGG | + | chr8_3:63746475-63746494 | Msa1301620:intron | 5.0% |
| !! | AAAAAAAAAAAAAAATTCTA+AGG | - | chr8_3:63746911-63746930 | None:intergenic | 5.0% |
| !!! | AATTTTTTTAAAAGAAAAAA+AGG | - | chr8_3:63746474-63746493 | None:intergenic | 5.0% |
| !!! | TTTTTTCTTTTAAAAAAATT+AGG | + | chr8_3:63746474-63746493 | Msa1301620:intron | 5.0% |
| !!! | TTTTTCTTTTAAAAAAATTA+GGG | + | chr8_3:63746475-63746494 | Msa1301620:intron | 5.0% |
| !! | AAAAAAAAAAAAAAATTCTA+AGG | - | chr8_3:63746911-63746930 | None:intergenic | 5.0% |
| TGTGTGTGCAGGGATACGTT+TGG | + | chr8_3:63746082-63746101 | Msa1301620:intron | 50.0% | |
| GTGTGTGCAGGGATACGTTT+GGG | + | chr8_3:63746083-63746102 | Msa1301620:intron | 50.0% | |
| GCAGGGATACGTTTGGGAAA+AGG | + | chr8_3:63746089-63746108 | Msa1301620:intron | 50.0% | |
| GTGGCTCACACCTCAGTAAA+TGG | + | chr8_3:63746995-63747014 | Msa1301620:CDS | 50.0% | |
| TGTGTGTGCAGGGATACGTT+TGG | + | chr8_3:63746082-63746101 | Msa1301620:intron | 50.0% | |
| GTGTGTGCAGGGATACGTTT+GGG | + | chr8_3:63746083-63746102 | Msa1301620:intron | 50.0% | |
| GCAGGGATACGTTTGGGAAA+AGG | + | chr8_3:63746089-63746108 | Msa1301620:intron | 50.0% | |
| GTGGCTCACACCTCAGTAAA+TGG | + | chr8_3:63746995-63747014 | Msa1301620:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 63745816 | 63747382 | 63745816 | ID=Msa1301620;Name=Msa1301620 |
| chr8_3 | mRNA | 63745816 | 63747382 | 63745816 | ID=Msa1301620-mRNA-1;Parent=Msa1301620;Name=Msa1301620-mRNA-1;_AED=0.21;_eAED=0.21;_QI=129|1|1|1|1|1|5|217|150 |
| chr8_3 | exon | 63745816 | 63746008 | 63745816 | ID=Msa1301620-mRNA-1:exon:19118;Parent=Msa1301620-mRNA-1 |
| chr8_3 | exon | 63746093 | 63746142 | 63746093 | ID=Msa1301620-mRNA-1:exon:19119;Parent=Msa1301620-mRNA-1 |
| chr8_3 | exon | 63746250 | 63746334 | 63746250 | ID=Msa1301620-mRNA-1:exon:19120;Parent=Msa1301620-mRNA-1 |
| chr8_3 | exon | 63746809 | 63746870 | 63746809 | ID=Msa1301620-mRNA-1:exon:19121;Parent=Msa1301620-mRNA-1 |
| chr8_3 | exon | 63746974 | 63747382 | 63746974 | ID=Msa1301620-mRNA-1:exon:19122;Parent=Msa1301620-mRNA-1 |
| chr8_3 | five_prime_UTR | 63745816 | 63745944 | 63745816 | ID=Msa1301620-mRNA-1:five_prime_utr;Parent=Msa1301620-mRNA-1 |
| chr8_3 | CDS | 63745945 | 63746008 | 63745945 | ID=Msa1301620-mRNA-1:cds;Parent=Msa1301620-mRNA-1 |
| chr8_3 | CDS | 63746093 | 63746142 | 63746093 | ID=Msa1301620-mRNA-1:cds;Parent=Msa1301620-mRNA-1 |
| chr8_3 | CDS | 63746250 | 63746334 | 63746250 | ID=Msa1301620-mRNA-1:cds;Parent=Msa1301620-mRNA-1 |
| chr8_3 | CDS | 63746809 | 63746870 | 63746809 | ID=Msa1301620-mRNA-1:cds;Parent=Msa1301620-mRNA-1 |
| chr8_3 | CDS | 63746974 | 63747165 | 63746974 | ID=Msa1301620-mRNA-1:cds;Parent=Msa1301620-mRNA-1 |
| chr8_3 | three_prime_UTR | 63747166 | 63747382 | 63747166 | ID=Msa1301620-mRNA-1:three_prime_utr;Parent=Msa1301620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
