AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1373340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373340 MtrunA17_Chr1g0213401 87.339 387 9 1 1 387 1 347 0.0 647
Msa1373340 MtrunA17_Chr2g0278051 27.184 206 116 7 30 230 57 233 7.09e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1373340 AT1G51110.1 65.556 360 118 2 31 384 48 407 3.17e-172 487

Find 112 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCCAGAATTCTTATTTA+AGG 0.074360 tig0019430:+26227 None:intergenic
TTTGGATATCCCCTGGAATT+TGG 0.199847 tig0019430:-25154 Msa1373340:CDS
ACTGGATATGGAACTTTAAA+TGG 0.214190 tig0019430:+26682 None:intergenic
TCCAAATGGGCCACCAATTA+TGG 0.218507 tig0019430:+25171 None:intergenic
ATTTCCTTAAATAAGAATTC+TGG 0.253516 tig0019430:-26231 Msa1373340:CDS
CAGCTCTGTCAAACCTAAAA+AGG 0.280928 tig0019430:+26725 None:intergenic
AATTCTCGCTTCGTGTCTGC+TGG 0.283011 tig0019430:-28049 Msa1373340:CDS
TCATCTCCGAGTAGCTTAAA+TGG 0.283845 tig0019430:+26658 None:intergenic
AGCTTAAATGGAACTGGATA+TGG 0.306171 tig0019430:+26670 None:intergenic
TCGTATCTCGAGAGGGAATA+AGG 0.306326 tig0019430:-26587 Msa1373340:intron
GCCATAATTGGTGGCCCATT+TGG 0.313713 tig0019430:-25172 Msa1373340:CDS
TGAATGGGTGATGCTGTTCC+AGG 0.324887 tig0019430:+27634 None:intergenic
ATGGATGATGCAGCCATAAT+TGG 0.328954 tig0019430:-25184 Msa1373340:CDS
TTCAAGTCCTAGAACGTATA+GGG 0.331993 tig0019430:-27818 Msa1373340:CDS
TGAACTTCTTGCCAAATTCC+AGG 0.338221 tig0019430:+25143 None:intergenic
AATGAGTGTTACAGATTGTT+GGG 0.344758 tig0019430:-25867 Msa1373340:intron
CACTCGCCCTCTTCTAGTTC+TGG 0.346170 tig0019430:+26198 None:intergenic
AGGGCGAGTGGCAGATGATA+TGG 0.354825 tig0019430:-26185 Msa1373340:CDS
ATCAGAAAATGACACAATAT+TGG 0.368308 tig0019430:+27343 None:intergenic
TCTTTCAGAGAACATTTGTT+GGG 0.373540 tig0019430:-27424 Msa1373340:intron
TTTCCTTAAATAAGAATTCT+GGG 0.380530 tig0019430:-26230 Msa1373340:CDS
TGGAACAGCATCACCCATTC+AGG 0.383631 tig0019430:-27632 Msa1373340:intron
CCGAGTAGCTTAAATGGAAC+TGG 0.390540 tig0019430:+26664 None:intergenic
TTACAGATTGTTGGGGAGAA+TGG 0.403797 tig0019430:-25859 Msa1373340:intron
GGGCTGAAGTTCTCCATGTC+TGG 0.404879 tig0019430:-25805 Msa1373340:CDS
AAGCGAGAATTTGAGGGATT+GGG 0.409134 tig0019430:+28061 None:intergenic
GAAGCGAGAATTTGAGGGAT+TGG 0.409696 tig0019430:+28060 None:intergenic
CTCTTTCAGAGAACATTTGT+TGG 0.410841 tig0019430:-27425 Msa1373340:intron
AATAATAATAACAACCTGAA+TGG 0.411588 tig0019430:+27618 None:intergenic
ATTCAAGTCCTAGAACGTAT+AGG 0.419239 tig0019430:-27819 Msa1373340:CDS
TGGAAGAAATTTGAAAGAAA+AGG 0.420561 tig0019430:+26702 None:intergenic
GACAAATTCAAGTTTGATTG+AGG 0.420832 tig0019430:-27686 Msa1373340:CDS
ACCACATACTTGTCGCATTC+AGG 0.425272 tig0019430:-26616 Msa1373340:CDS
CAATGAGTGTTACAGATTGT+TGG 0.428126 tig0019430:-25868 Msa1373340:intron
TACGTGGTTAATATCTTGCT+TGG 0.429109 tig0019430:-25826 Msa1373340:CDS
TCACTCATCCAAGCTCTTGT+TGG 0.430914 tig0019430:-27977 Msa1373340:CDS
ATTGTAACCTCGTACACTTT+GGG 0.434349 tig0019430:+25205 None:intergenic
CATTGTAACCTCGTACACTT+TGG 0.437989 tig0019430:+25204 None:intergenic
AAGAAGAACGTCCACGTCCT+TGG 0.440262 tig0019430:+27951 None:intergenic
TTATTAACAGCAATTTCATC+GGG 0.446100 tig0019430:-26367 Msa1373340:CDS
AAATAATTTGATTGTCTCCT+CGG 0.447447 tig0019430:+24995 None:intergenic
ATTTGGCAAGAAGTTCATCT+TGG 0.458400 tig0019430:-25137 Msa1373340:CDS
CAAGTTTGATTGAGGGTCGC+TGG 0.473813 tig0019430:-27678 Msa1373340:CDS
TTCCTTTGCAGATTCAATGA+TGG 0.476623 tig0019430:-25033 Msa1373340:intron
AGACACGAAGCGAGAATTTG+AGG 0.477785 tig0019430:+28054 None:intergenic
GATATTGTGTGATGAATGAT+TGG 0.478489 tig0019430:-28254 None:intergenic
AATTCCAGGGGATATCCAAA+TGG 0.479222 tig0019430:+25157 None:intergenic
ACAAATTCAAGTTTGATTGA+GGG 0.481218 tig0019430:-27685 Msa1373340:CDS
TTTAGACTGTGACGGATAGT+TGG 0.481678 tig0019430:-25998 Msa1373340:intron
CCAGTTCCATTTAAGCTACT+CGG 0.481795 tig0019430:-26664 Msa1373340:CDS
ATAATAATAACAACCTGAAT+GGG 0.485224 tig0019430:+27619 None:intergenic
CAAGCTCTTGTTGGCATCCA+AGG 0.485345 tig0019430:-27968 Msa1373340:CDS
TGGCCCATTTGGATATCCCC+TGG 0.490686 tig0019430:-25161 Msa1373340:CDS
GACAGACATAAACATAATCT+TGG 0.490695 tig0019430:-28222 Msa1373340:five_prime_UTR
GTTATTAACAGCAATTTCAT+CGG 0.491170 tig0019430:-26368 Msa1373340:CDS
ACGTGGTTAATATCTTGCTT+GGG 0.492417 tig0019430:-25825 Msa1373340:CDS
TCTGTCTGTGTCTGTAACAA+TGG 0.496912 tig0019430:-28158 Msa1373340:exon
GACACGAAGCGAGAATTTGA+GGG 0.500687 tig0019430:+28055 None:intergenic
CTTGGATGCCAACAAGAGCT+TGG 0.505511 tig0019430:+27969 None:intergenic
ATTCTCGCTTCGTGTCTGCT+GGG 0.506359 tig0019430:-28048 Msa1373340:CDS
TTGCAGATTCAATGATGGTA+AGG 0.516539 tig0019430:-25028 Msa1373340:intron
TATGTTATTATGTGTGTGGC+TGG 0.516556 tig0019430:+28197 None:intergenic
CTTTCAGAGAACATTTGTTG+GGG 0.528025 tig0019430:-27423 Msa1373340:intron
AAACAGGCAGCAGCATCCAT+TGG 0.529399 tig0019430:-26763 Msa1373340:intron
CTGCTTTCCCATCAGACCAT+TGG 0.532262 tig0019430:+25962 None:intergenic
GAACTTCTTGCCAAATTCCA+GGG 0.534199 tig0019430:+25144 None:intergenic
AGAGAGACGTTGAGTTGCTG+TGG 0.535610 tig0019430:+27926 None:intergenic
ATTCCAGGGGATATCCAAAT+GGG 0.537199 tig0019430:+25158 None:intergenic
CTGTTATGTTATTATGTGTG+TGG 0.539291 tig0019430:+28193 None:intergenic
CAATGGTCTGATGGGAAAGC+AGG 0.540494 tig0019430:-25961 Msa1373340:intron
GAATGCTGCCAATGGTCTGA+TGG 0.545354 tig0019430:-25970 Msa1373340:CDS
CTAGCTAAATACAACATGGA+AGG 0.546362 tig0019430:-24915 Msa1373340:three_prime_UTR
TTATTCTCTTTAGACTGTGA+CGG 0.547393 tig0019430:-26006 Msa1373340:intron
GGAAACCTTCGTATCTCGAG+AGG 0.557760 tig0019430:-26595 Msa1373340:CDS
CTTGTTGGCATCCAAGGACG+TGG 0.563106 tig0019430:-27962 Msa1373340:CDS
TTGCTTCTGCAGCACAAATG+TGG 0.568163 tig0019430:+26408 None:intergenic
AGAAGATCCAGAACTAGAAG+AGG 0.571950 tig0019430:-26205 Msa1373340:CDS
TAAATACAACATGGAAGGGA+AGG 0.574465 tig0019430:-24910 Msa1373340:three_prime_UTR
GTTGTGAATGTAAACAGTAT+AGG 0.576758 tig0019430:-28121 Msa1373340:CDS
CTCAACTTTGAGCTCACCGA+TGG 0.576956 tig0019430:+27319 None:intergenic
GCAGCAGCATCCATTGGAGA+TGG 0.578573 tig0019430:-26757 Msa1373340:CDS
GCAGATGATATGGAATTCAC+AGG 0.579711 tig0019430:-26175 Msa1373340:intron
TGATGAATGATTGGCAAGAG+TGG 0.586726 tig0019430:-28245 None:intergenic
TCCTGAATGCGACAAGTATG+TGG 0.590251 tig0019430:+26615 None:intergenic
CAGAACTAGAAGAGGGCGAG+TGG 0.592200 tig0019430:-26197 Msa1373340:CDS
CTACTCGGAGATGAAGCAAA+GGG 0.602582 tig0019430:-26649 Msa1373340:CDS
TAGCTAAATACAACATGGAA+GGG 0.604145 tig0019430:-24914 Msa1373340:three_prime_UTR
CAAAGTGTACGAGGTTACAA+TGG 0.607400 tig0019430:-25203 Msa1373340:CDS
TGGTTAGAGAATGCTGCCAA+TGG 0.607813 tig0019430:-25978 Msa1373340:CDS
TCGGAGATGAAGCAAAGGGT+TGG 0.610464 tig0019430:-26645 Msa1373340:CDS
TCAAGTCCTAGAACGTATAG+GGG 0.612364 tig0019430:-27817 Msa1373340:CDS
AATGCTGCCAATGGTCTGAT+GGG 0.614840 tig0019430:-25969 Msa1373340:CDS
GACACAATATTGGTTACGCG+TGG 0.616061 tig0019430:+27353 None:intergenic
TTCCTTAAATAAGAATTCTG+GGG 0.617362 tig0019430:-26229 Msa1373340:CDS
ATTTAGCTAGCAATGATATG+TGG 0.624856 tig0019430:+24928 None:intergenic
ATGAGTGTTACAGATTGTTG+GGG 0.627985 tig0019430:-25866 Msa1373340:intron
TATTCCCTCTCGAGATACGA+AGG 0.631516 tig0019430:+26590 None:intergenic
GCTACTCGGAGATGAAGCAA+AGG 0.632918 tig0019430:-26650 Msa1373340:CDS
CATCGGTGAGCTCAAAGTTG+AGG 0.633284 tig0019430:-27318 Msa1373340:intron
GATGATGCAGCCATAATTGG+TGG 0.633822 tig0019430:-25181 Msa1373340:CDS
GAAGATCCAGAACTAGAAGA+GGG 0.640333 tig0019430:-26204 Msa1373340:CDS
AACTTCTTGCCAAATTCCAG+GGG 0.647151 tig0019430:+25145 None:intergenic
GATGAATGATTGGCAAGAGT+GGG 0.652728 tig0019430:-28244 Msa1373340:five_prime_UTR
ATTAACAGCAATTTCATCGG+GGG 0.654374 tig0019430:-26365 Msa1373340:CDS
GAAACCTTCGTATCTCGAGA+GGG 0.664581 tig0019430:-26594 Msa1373340:CDS
AAGTAGGCCCAAAGTGTACG+AGG 0.669717 tig0019430:-25212 Msa1373340:CDS
ATTGCTAGCTAAATACAACA+TGG 0.692869 tig0019430:-24919 Msa1373340:three_prime_UTR
TATTAACAGCAATTTCATCG+GGG 0.693361 tig0019430:-26366 Msa1373340:CDS
CAAGTCCTAGAACGTATAGG+GGG 0.705630 tig0019430:-27816 Msa1373340:CDS
GGTAAGGTCAGAATTAGCCG+AGG 0.716488 tig0019430:-25012 Msa1373340:CDS
GAATGGACAAATAAAGTACG+TGG 0.718510 tig0019430:-25842 Msa1373340:CDS
ATACTCGCACAAATGCATAG+TGG 0.741709 tig0019430:-24966 Msa1373340:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGAAGTTAATTTTTTTA+GGG - tig0019430:26907-26926 Msa1373340:intron 10.0%
!!! TTTTTTTCAATAAACATAAC+TGG - tig0019430:26693-26712 Msa1373340:CDS 15.0%
!! AGAAAAACAAAATTATTAGT+TGG + tig0019430:26886-26905 None:intergenic 15.0%
!!! CATTTGAAGTTAATTTTTTT+AGG - tig0019430:26906-26925 Msa1373340:intron 15.0%
!!! TATTTTAACCTTTTTTTTGT+TGG - tig0019430:28239-28258 Msa1373340:five_prime_UTR 15.0%
!! ATAATAATAACAACCTGAAT+GGG + tig0019430:25390-25409 None:intergenic 20.0%
!! AATAATAATAACAACCTGAA+TGG + tig0019430:25391-25410 None:intergenic 20.0%
!!! TTTTTTTAGTGTATTTCAAG+AGG - tig0019430:25610-25629 Msa1373340:intron 20.0%
!! TAATACTAAGTAACTACAAT+TGG - tig0019430:25711-25730 Msa1373340:intron 20.0%
!!! AGTAAGTTTTTTAGTTTAAG+AGG - tig0019430:25830-25849 Msa1373340:CDS 20.0%
!!! CTATTAACAAATTTTTGAAG+AGG + tig0019430:25907-25926 None:intergenic 20.0%
!! TATTATGACGATGTTTATAT+TGG + tig0019430:26458-26477 None:intergenic 20.0%
!! ATTTCCTTAAATAAGAATTC+TGG - tig0019430:26775-26794 Msa1373340:intron 20.0%
!! TTTCCTTAAATAAGAATTCT+GGG - tig0019430:26776-26795 Msa1373340:intron 20.0%
!! TATATTATACGAATGCTTTA+TGG - tig0019430:27404-27423 Msa1373340:CDS 20.0%
!! TATAGGTTATAAAACAAAGT+TGG - tig0019430:27627-27646 Msa1373340:intron 20.0%
!! ACAAATTCAAGTTTGATTGA+GGG - tig0019430:25321-25340 Msa1373340:intron 25.0%
! ATCAGAAAATGACACAATAT+TGG + tig0019430:25666-25685 None:intergenic 25.0%
! AATTATGCCACATAATTCTA+AGG - tig0019430:25874-25893 Msa1373340:intron 25.0%
! AGTTAATATAGATAGCTTTC+TGG - tig0019430:25980-25999 Msa1373340:CDS 25.0%
! TGAACAGCTATATGATATAA+TGG + tig0019430:26069-26088 None:intergenic 25.0%
!! ATGGAAAAAGAATCCTTTTT+AGG - tig0019430:26268-26287 Msa1373340:intron 25.0%
! TGGAAGAAATTTGAAAGAAA+AGG + tig0019430:26307-26326 None:intergenic 25.0%
! GTTATTAACAGCAATTTCAT+CGG - tig0019430:26638-26657 Msa1373340:CDS 25.0%
! TTATTAACAGCAATTTCATC+GGG - tig0019430:26639-26658 Msa1373340:CDS 25.0%
! TTCCTTAAATAAGAATTCTG+GGG - tig0019430:26777-26796 Msa1373340:intron 25.0%
! ATGTAAGCAATTATCTTACA+AGG - tig0019430:26953-26972 Msa1373340:intron 25.0%
!!! AGCTTAAATATTTTAGAGCA+TGG - tig0019430:27590-27609 Msa1373340:intron 25.0%
!!! AATATTTTAGAGCATGGTTA+AGG - tig0019430:27596-27615 Msa1373340:intron 25.0%
! TGGTTAAGGTTATAAAGTAT+AGG - tig0019430:27610-27629 Msa1373340:intron 25.0%
!!! GAAAATGGTAATTGATTTGA+AGG + tig0019430:27657-27676 None:intergenic 25.0%
!! TTTTACTTGACAGAAAAAGT+AGG - tig0019430:27778-27797 Msa1373340:intron 25.0%
!! AAATAGTAGATTTTGTATGC+TGG - tig0019430:27931-27950 Msa1373340:intron 25.0%
! AAATAATTTGATTGTCTCCT+CGG + tig0019430:28014-28033 None:intergenic 25.0%
GACAGACATAAACATAATCT+TGG - tig0019430:24784-24803 Msa1373340:three_prime_UTR 30.0%
CTGTTATGTTATTATGTGTG+TGG + tig0019430:24816-24835 None:intergenic 30.0%
GTTGTGAATGTAAACAGTAT+AGG - tig0019430:24885-24904 Msa1373340:three_prime_UTR 30.0%
CAGAAAGAGAGAATATAGAT+TGG + tig0019430:25293-25312 None:intergenic 30.0%
! GACAAATTCAAGTTTGATTG+AGG - tig0019430:25320-25339 Msa1373340:intron 30.0%
TTAGGTAGGTATTATCAAGT+TGG + tig0019430:25478-25497 None:intergenic 30.0%
AATCGTCATATCACTCAATA+TGG - tig0019430:25542-25561 Msa1373340:intron 30.0%
TCTTTCAGAGAACATTTGTT+GGG - tig0019430:25582-25601 Msa1373340:intron 30.0%
TCATGTCCTTCAATTTAAAC+AGG - tig0019430:26227-26246 Msa1373340:CDS 30.0%
ACTGGATATGGAACTTTAAA+TGG + tig0019430:26327-26346 None:intergenic 30.0%
!!! GAACTAGCATTTTAATTGAG+GGG + tig0019430:26498-26517 None:intergenic 30.0%
!!! CGAACTAGCATTTTAATTGA+GGG + tig0019430:26499-26518 None:intergenic 30.0%
!!! ACGAACTAGCATTTTAATTG+AGG + tig0019430:26500-26519 None:intergenic 30.0%
! TATATGTTGCTGTTAAGTCT+TGG + tig0019430:26564-26583 None:intergenic 30.0%
AGCAACATATATATAGTGCA+GGG - tig0019430:26573-26592 Msa1373340:intron 30.0%
! GCTGTTAATAACTTTTGTCT+AGG + tig0019430:26630-26649 None:intergenic 30.0%
TATTAACAGCAATTTCATCG+GGG - tig0019430:26640-26659 Msa1373340:CDS 30.0%
! TTCCCCAGAATTCTTATTTA+AGG + tig0019430:26782-26801 None:intergenic 30.0%
TTATTCTCTTTAGACTGTGA+CGG - tig0019430:27000-27019 Msa1373340:intron 30.0%
AATGAGTGTTACAGATTGTT+GGG - tig0019430:27139-27158 Msa1373340:intron 30.0%
TTACACAAAAATTCCAGACA+TGG + tig0019430:27217-27236 None:intergenic 30.0%
GAATGGACGAATAAATATGA+AGG - tig0019430:27276-27295 Msa1373340:intron 30.0%
! TAGTCTTAACCACTTATAGA+AGG + tig0019430:27552-27571 None:intergenic 30.0%
! GTTAAGACTAGACTTTTACT+AGG - tig0019430:27562-27581 Msa1373340:intron 30.0%
! AAAGTTTTCATTTTCACGCA+GGG + tig0019430:27679-27698 None:intergenic 30.0%
! AAAAGTTTTCATTTTCACGC+AGG + tig0019430:27680-27699 None:intergenic 30.0%
ATAGTCATCACTAGATTATC+AGG - tig0019430:27701-27720 Msa1373340:intron 30.0%
TAGTCATCACTAGATTATCA+GGG - tig0019430:27702-27721 Msa1373340:intron 30.0%
!!! AGATTTTGTATGCTGGTTTA+AGG - tig0019430:27938-27957 Msa1373340:CDS 30.0%
ATTTAGCTAGCAATGATATG+TGG + tig0019430:28081-28100 None:intergenic 30.0%
ATTGCTAGCTAAATACAACA+TGG - tig0019430:28087-28106 Msa1373340:CDS 30.0%
TAGCTAAATACAACATGGAA+GGG - tig0019430:28092-28111 Msa1373340:CDS 30.0%
TATGTTATTATGTGTGTGGC+TGG + tig0019430:24812-24831 None:intergenic 35.0%
! GAAAGGTGATGGTAAAATTC+AGG + tig0019430:25150-25169 None:intergenic 35.0%
! GAATTTTACCATCACCTTTC+AGG - tig0019430:25150-25169 Msa1373340:CDS 35.0%
ATTCAAGTCCTAGAACGTAT+AGG - tig0019430:25187-25206 Msa1373340:CDS 35.0%
TTCAAGTCCTAGAACGTATA+GGG - tig0019430:25188-25207 Msa1373340:CDS 35.0%
GGTCTATCATCTCATGAAAA+AGG + tig0019430:25272-25291 None:intergenic 35.0%
AATACCTACCTAACACAACA+AGG - tig0019430:25485-25504 Msa1373340:intron 35.0%
CATGTGTTGAACTATTGAAC+AGG + tig0019430:25519-25538 None:intergenic 35.0%
CTCTTTCAGAGAACATTTGT+TGG - tig0019430:25581-25600 Msa1373340:intron 35.0%
! CTTTCAGAGAACATTTGTTG+GGG - tig0019430:25583-25602 Msa1373340:intron 35.0%
!! ATGCCACATAATTCTAAGGT+TGG - tig0019430:25878-25897 Msa1373340:intron 35.0%
TAGCCAACCTTAGAATTATG+TGG + tig0019430:25884-25903 None:intergenic 35.0%
ATGACAAGCACAAACACAAA+CGG + tig0019430:26038-26057 None:intergenic 35.0%
!!! TCTCTGATCTTTTGAGACTT+TGG - tig0019430:26107-26126 Msa1373340:intron 35.0%
! GATTCTTTTTCCATCTCCAA+TGG + tig0019430:26262-26281 None:intergenic 35.0%
AGCTTAAATGGAACTGGATA+TGG + tig0019430:26339-26358 None:intergenic 35.0%
CAGCAACATATATATAGTGC+AGG - tig0019430:26572-26591 Msa1373340:intron 35.0%
ATTAACAGCAATTTCATCGG+GGG - tig0019430:26641-26660 Msa1373340:CDS 35.0%
GATGTGAAAAATAGCGACAA+TGG + tig0019430:26726-26745 None:intergenic 35.0%
TTCACATCCTTAATTCCAAC+AGG - tig0019430:26738-26757 Msa1373340:CDS 35.0%
TCTATTGCCTGTTGGAATTA+AGG + tig0019430:26748-26767 None:intergenic 35.0%
TGAGTTTATCTATTGCCTGT+TGG + tig0019430:26756-26775 None:intergenic 35.0%
ATACACAAACTGTAAACGTG+AGG + tig0019430:27116-27135 None:intergenic 35.0%
CAATGAGTGTTACAGATTGT+TGG - tig0019430:27138-27157 Msa1373340:intron 35.0%
ATGAGTGTTACAGATTGTTG+GGG - tig0019430:27140-27159 Msa1373340:intron 35.0%
GAATGGACAAATAAAGTACG+TGG - tig0019430:27164-27183 Msa1373340:intron 35.0%
TACGTGGTTAATATCTTGCT+TGG - tig0019430:27180-27199 Msa1373340:intron 35.0%
ACGTGGTTAATATCTTGCTT+GGG - tig0019430:27181-27200 Msa1373340:intron 35.0%
TTGCTAGTGTTACAGATTGT+TGG - tig0019430:27250-27269 Msa1373340:intron 35.0%
TGCTAGTGTTACAGATTGTT+GGG - tig0019430:27251-27270 Msa1373340:intron 35.0%
TTACAGATTGTTGGGAAGAA+TGG - tig0019430:27259-27278 Msa1373340:intron 35.0%
GGAATGTAGACAATGAAGAT+AGG - tig0019430:27297-27316 Msa1373340:intron 35.0%
TAGAAGTAATAACTGGAACC+TGG - tig0019430:27357-27376 Msa1373340:CDS 35.0%
AGAAGTAATAACTGGAACCT+GGG - tig0019430:27358-27377 Msa1373340:CDS 35.0%
ATGTTGGAATGTGATAAAGC+TGG - tig0019430:27501-27520 Msa1373340:intron 35.0%
GAACTCGATTCAATCAGAAT+GGG - tig0019430:27523-27542 Msa1373340:intron 35.0%
TCACTAGATTATCAGGGATA+AGG - tig0019430:27708-27727 Msa1373340:intron 35.0%
CACTAGATTATCAGGGATAA+GGG - tig0019430:27709-27728 Msa1373340:intron 35.0%
ACTAGATTATCAGGGATAAG+GGG - tig0019430:27710-27729 Msa1373340:intron 35.0%
ATTGTAACCTCGTACACTTT+GGG + tig0019430:27804-27823 None:intergenic 35.0%
ATTTGGCAAGAAGTTCATCT+TGG - tig0019430:27869-27888 Msa1373340:intron 35.0%
TTCCTTTGCAGATTCAATGA+TGG - tig0019430:27973-27992 Msa1373340:CDS 35.0%
TACCATCATTGAATCTGCAA+AGG + tig0019430:27978-27997 None:intergenic 35.0%
TTGCAGATTCAATGATGGTA+AGG - tig0019430:27978-27997 Msa1373340:CDS 35.0%
CTAGCTAAATACAACATGGA+AGG - tig0019430:28091-28110 Msa1373340:CDS 35.0%
TAAATACAACATGGAAGGGA+AGG - tig0019430:28096-28115 Msa1373340:CDS 35.0%
! ATTACGTTTTTGCACGTTCT+TGG - tig0019430:28185-28204 Msa1373340:five_prime_UTR 35.0%
! TTACGTTTTTGCACGTTCTT+GGG - tig0019430:28186-28205 Msa1373340:five_prime_UTR 35.0%
TCTGTCTGTGTCTGTAACAA+TGG - tig0019430:24848-24867 Msa1373340:three_prime_UTR 40.0%
AAGCGAGAATTTGAGGGATT+GGG + tig0019430:24948-24967 None:intergenic 40.0%
! GGTGATGGTAAAATTCAGGA+AGG + tig0019430:25146-25165 None:intergenic 40.0%
TCAAGTCCTAGAACGTATAG+GGG - tig0019430:25189-25208 Msa1373340:CDS 40.0%
GAGCAAAATTGAAGACGAAC+CGG + tig0019430:25226-25245 None:intergenic 40.0%
! CTCATTTTCACTACAAGACC+TGG - tig0019430:25354-25373 Msa1373340:intron 40.0%
! TGATCCTTGTTGTGTTAGGT+AGG + tig0019430:25492-25511 None:intergenic 40.0%
! TGAGTGATCCTTGTTGTGTT+AGG + tig0019430:25496-25515 None:intergenic 40.0%
!!! GTGTCATTTTCTGATGCCAT+CGG - tig0019430:25671-25690 Msa1373340:intron 40.0%
TGACAAGCACAAACACAAAC+GGG + tig0019430:26037-26056 None:intergenic 40.0%
CTGCTGCCTGTTTAAATTGA+AGG + tig0019430:26236-26255 None:intergenic 40.0%
CAGCTCTGTCAAACCTAAAA+AGG + tig0019430:26284-26303 None:intergenic 40.0%
CCAGTTCCATTTAAGCTACT+CGG - tig0019430:26342-26361 Msa1373340:intron 40.0%
TCATCTCCGAGTAGCTTAAA+TGG + tig0019430:26351-26370 None:intergenic 40.0%
!!! CTAGCATTTTAATTGAGGGG+AGG + tig0019430:26495-26514 None:intergenic 40.0%
AGAAGATCCAGAACTAGAAG+AGG - tig0019430:26801-26820 Msa1373340:intron 40.0%
GAAGATCCAGAACTAGAAGA+GGG - tig0019430:26802-26821 Msa1373340:intron 40.0%
GCAGATGATATGGAATTCAC+AGG - tig0019430:26831-26850 Msa1373340:intron 40.0%
!! TTTAGACTGTGACGGATAGT+TGG - tig0019430:27008-27027 Msa1373340:intron 40.0%
TTACAGATTGTTGGGGAGAA+TGG - tig0019430:27147-27166 Msa1373340:intron 40.0%
GAGAGGGTAGAAGTAATAAC+TGG - tig0019430:27350-27369 Msa1373340:CDS 40.0%
GTTATTAACGCCTTTCAGCA+AGG - tig0019430:27426-27445 Msa1373340:intron 40.0%
AGAAAAGAGTCCTTGCTGAA+AGG + tig0019430:27439-27458 None:intergenic 40.0%
TACGTTACATCTCCACTTCA+AGG + tig0019430:27472-27491 None:intergenic 40.0%
TTGAAGTGGAGATGTAACGT+AGG - tig0019430:27471-27490 Msa1373340:intron 40.0%
TGAAGTGGAGATGTAACGTA+GGG - tig0019430:27472-27491 Msa1373340:intron 40.0%
TAACGTAGGGGATTTCATGT+TGG - tig0019430:27485-27504 Msa1373340:intron 40.0%
GGAACTCGATTCAATCAGAA+TGG - tig0019430:27522-27541 Msa1373340:intron 40.0%
!! AATGGGTTGCCTTCTATAAG+TGG - tig0019430:27540-27559 Msa1373340:intron 40.0%
! TCATTTTCACGCAGGGAAAA+TGG + tig0019430:27672-27691 None:intergenic 40.0%
CATTGTAACCTCGTACACTT+TGG + tig0019430:27805-27824 None:intergenic 40.0%
CAAAGTGTACGAGGTTACAA+TGG - tig0019430:27803-27822 Msa1373340:CDS 40.0%
ATGGATGATGCAGCCATAAT+TGG - tig0019430:27822-27841 Msa1373340:CDS 40.0%
ATTCCAGGGGATATCCAAAT+GGG + tig0019430:27851-27870 None:intergenic 40.0%
AATTCCAGGGGATATCCAAA+TGG + tig0019430:27852-27871 None:intergenic 40.0%
TTTGGATATCCCCTGGAATT+TGG - tig0019430:27852-27871 Msa1373340:intron 40.0%
AACTTCTTGCCAAATTCCAG+GGG + tig0019430:27864-27883 None:intergenic 40.0%
GAACTTCTTGCCAAATTCCA+GGG + tig0019430:27865-27884 None:intergenic 40.0%
TGAACTTCTTGCCAAATTCC+AGG + tig0019430:27866-27885 None:intergenic 40.0%
ATACTCGCACAAATGCATAG+TGG - tig0019430:28040-28059 Msa1373340:CDS 40.0%
! TACGTTTTTGCACGTTCTTG+GGG - tig0019430:28187-28206 Msa1373340:five_prime_UTR 40.0%
GAAGCGAGAATTTGAGGGAT+TGG + tig0019430:24949-24968 None:intergenic 45.0%
GACACGAAGCGAGAATTTGA+GGG + tig0019430:24954-24973 None:intergenic 45.0%
AGACACGAAGCGAGAATTTG+AGG + tig0019430:24955-24974 None:intergenic 45.0%
TCACTCATCCAAGCTCTTGT+TGG - tig0019430:25029-25048 Msa1373340:intron 45.0%
CTCAATAGCCTGAAAGGTGA+TGG + tig0019430:25161-25180 None:intergenic 45.0%
CAAGTCCTAGAACGTATAGG+GGG - tig0019430:25190-25209 Msa1373340:CDS 45.0%
! GACACAATATTGGTTACGCG+TGG + tig0019430:25656-25675 None:intergenic 45.0%
TGGCTTTCTTCGTGTCTATC+AGG - tig0019430:26000-26019 Msa1373340:intron 45.0%
ATATGTCTGACCCTATCTCG+TGG - tig0019430:26164-26183 Msa1373340:intron 45.0%
TATGTCTGACCCTATCTCGT+GGG - tig0019430:26165-26184 Msa1373340:intron 45.0%
AGTCTTTGTCCCACGAGATA+GGG + tig0019430:26177-26196 None:intergenic 45.0%
AAGTCTTTGTCCCACGAGAT+AGG + tig0019430:26178-26197 None:intergenic 45.0%
CCGAGTAGCTTAAATGGAAC+TGG + tig0019430:26345-26364 None:intergenic 45.0%
CTACTCGGAGATGAAGCAAA+GGG - tig0019430:26357-26376 Msa1373340:CDS 45.0%
ACCACATACTTGTCGCATTC+AGG - tig0019430:26390-26409 Msa1373340:CDS 45.0%
TCCTGAATGCGACAAGTATG+TGG + tig0019430:26394-26413 None:intergenic 45.0%
GAAACCTTCGTATCTCGAGA+GGG - tig0019430:26412-26431 Msa1373340:CDS 45.0%
TATTCCCTCTCGAGATACGA+AGG + tig0019430:26419-26438 None:intergenic 45.0%
TCGTATCTCGAGAGGGAATA+AGG - tig0019430:26419-26438 Msa1373340:intron 45.0%
CGAGAGGGAATAAGGTGATT+AGG - tig0019430:26427-26446 Msa1373340:intron 45.0%
TTGCTTCTGCAGCACAAATG+TGG + tig0019430:26601-26620 None:intergenic 45.0%
TGGTTAGAGAATGCTGCCAA+TGG - tig0019430:27028-27047 Msa1373340:intron 45.0%
AATGCTGCCAATGGTCTGAT+GGG - tig0019430:27037-27056 Msa1373340:intron 45.0%
TAAACGTGAGGCAGAACTTG+TGG + tig0019430:27104-27123 None:intergenic 45.0%
CTGTAACACTAGCAAACGTG+AGG + tig0019430:27245-27264 None:intergenic 45.0%
TGAGAGTAAGAGAGAGAGAG+AGG - tig0019430:27333-27352 Msa1373340:CDS 45.0%
GAGAGTAAGAGAGAGAGAGA+GGG - tig0019430:27334-27353 Msa1373340:CDS 45.0%
CTTTCCTAACATGCTAACCC+AGG + tig0019430:27378-27397 None:intergenic 45.0%
GAAGTGGAGATGTAACGTAG+GGG - tig0019430:27473-27492 Msa1373340:intron 45.0%
GATGATGCAGCCATAATTGG+TGG - tig0019430:27825-27844 Msa1373340:CDS 45.0%
TCCAAATGGGCCACCAATTA+TGG + tig0019430:27838-27857 None:intergenic 45.0%
AATTCTCGCTTCGTGTCTGC+TGG - tig0019430:24957-24976 Msa1373340:exon 50.0%
ATTCTCGCTTCGTGTCTGCT+GGG - tig0019430:24958-24977 Msa1373340:exon 50.0%
CTTGGATGCCAACAAGAGCT+TGG + tig0019430:25040-25059 None:intergenic 50.0%
CAAGCTCTTGTTGGCATCCA+AGG - tig0019430:25038-25057 Msa1373340:intron 50.0%
AAGAAGAACGTCCACGTCCT+TGG + tig0019430:25058-25077 None:intergenic 50.0%
! AGAGAGACGTTGAGTTGCTG+TGG + tig0019430:25083-25102 None:intergenic 50.0%
AGCACGCTCAATAGCCTGAA+AGG + tig0019430:25167-25186 None:intergenic 50.0%
ACACACCCCCTATACGTTCT+AGG + tig0019430:25198-25217 None:intergenic 50.0%
! TATAGGGGGTGTGTCTGATC+CGG - tig0019430:25204-25223 Msa1373340:CDS 50.0%
CAAGTTTGATTGAGGGTCGC+TGG - tig0019430:25328-25347 Msa1373340:intron 50.0%
TGAATGGGTGATGCTGTTCC+AGG + tig0019430:25375-25394 None:intergenic 50.0%
TGGAACAGCATCACCCATTC+AGG - tig0019430:25374-25393 Msa1373340:intron 50.0%
CTCAACTTTGAGCTCACCGA+TGG + tig0019430:25690-25709 None:intergenic 50.0%
CATCGGTGAGCTCAAAGTTG+AGG - tig0019430:25688-25707 Msa1373340:intron 50.0%
AAACAGGCAGCAGCATCCAT+TGG - tig0019430:26243-26262 Msa1373340:CDS 50.0%
GCTACTCGGAGATGAAGCAA+AGG - tig0019430:26356-26375 Msa1373340:CDS 50.0%
TCGGAGATGAAGCAAAGGGT+TGG - tig0019430:26361-26380 Msa1373340:CDS 50.0%
GGAAACCTTCGTATCTCGAG+AGG - tig0019430:26411-26430 Msa1373340:CDS 50.0%
AACAGCAATTTCATCGGGGG+TGG - tig0019430:26644-26663 Msa1373340:CDS 50.0%
ACAGCAATTTCATCGGGGGT+GGG - tig0019430:26645-26664 Msa1373340:CDS 50.0%
GAATGCTGCCAATGGTCTGA+TGG - tig0019430:27036-27055 Msa1373340:intron 50.0%
CTGCTTTCCCATCAGACCAT+TGG + tig0019430:27047-27066 None:intergenic 50.0%
CAATGGTCTGATGGGAAAGC+AGG - tig0019430:27045-27064 Msa1373340:intron 50.0%
!! GGAACCTGGGTTAGCATGTT+AGG - tig0019430:27371-27390 Msa1373340:CDS 50.0%
CTGTCTGCATGTCCTTGAAG+TGG - tig0019430:27457-27476 Msa1373340:intron 50.0%
AAGTAGGCCCAAAGTGTACG+AGG - tig0019430:27794-27813 Msa1373340:intron 50.0%
! GCCATAATTGGTGGCCCATT+TGG - tig0019430:27834-27853 Msa1373340:CDS 50.0%
GGTAAGGTCAGAATTAGCCG+AGG - tig0019430:27994-28013 Msa1373340:CDS 50.0%
CTTGTTGGCATCCAAGGACG+TGG - tig0019430:25044-25063 Msa1373340:intron 55.0%
GCAGCAGCATCCATTGGAGA+TGG - tig0019430:26249-26268 Msa1373340:CDS 55.0%
GGTGGGTGTTCGAGAGGTAA+GGG - tig0019430:26662-26681 Msa1373340:CDS 55.0%
! TGTTCGAGAGGTAAGGGTGC+TGG - tig0019430:26668-26687 Msa1373340:CDS 55.0%
!! CACTCGCCCTCTTCTAGTTC+TGG + tig0019430:26811-26830 None:intergenic 55.0%
CAGAACTAGAAGAGGGCGAG+TGG - tig0019430:26809-26828 Msa1373340:intron 55.0%
AGGGCGAGTGGCAGATGATA+TGG - tig0019430:26821-26840 Msa1373340:intron 55.0%
GGGCTGAAGTTCTCCATGTC+TGG - tig0019430:27201-27220 Msa1373340:intron 55.0%
TGGCCCATTTGGATATCCCC+TGG - tig0019430:27845-27864 Msa1373340:intron 55.0%
GGGTGGGTGTTCGAGAGGTA+AGG - tig0019430:26661-26680 Msa1373340:CDS 60.0%
ATCGGGGGTGGGTGTTCGAG+AGG - tig0019430:26656-26675 Msa1373340:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0019430 gene 24765 28263 24765 ID=Msa1373340;Name=Msa1373340
tig0019430 mRNA 24765 28263 24765 ID=Msa1373340-mRNA-1;Parent=Msa1373340;Name=Msa1373340-mRNA-1;_AED=0.10;_eAED=0.10;_QI=102|1|1|1|1|1|11|204|387
tig0019430 exon 24765 25044 24765 ID=Msa1373340-mRNA-1:exon:3332;Parent=Msa1373340-mRNA-1
tig0019430 exon 25130 25237 25130 ID=Msa1373340-mRNA-1:exon:3331;Parent=Msa1373340-mRNA-1
tig0019430 exon 25796 25875 25796 ID=Msa1373340-mRNA-1:exon:3330;Parent=Msa1373340-mRNA-1
tig0019430 exon 25962 26015 25962 ID=Msa1373340-mRNA-1:exon:3329;Parent=Msa1373340-mRNA-1
tig0019430 exon 26176 26268 26176 ID=Msa1373340-mRNA-1:exon:3328;Parent=Msa1373340-mRNA-1
tig0019430 exon 26351 26434 26351 ID=Msa1373340-mRNA-1:exon:3327;Parent=Msa1373340-mRNA-1
tig0019430 exon 26588 26779 26588 ID=Msa1373340-mRNA-1:exon:3326;Parent=Msa1373340-mRNA-1
tig0019430 exon 27319 27438 27319 ID=Msa1373340-mRNA-1:exon:3325;Parent=Msa1373340-mRNA-1
tig0019430 exon 27633 27707 27633 ID=Msa1373340-mRNA-1:exon:3324;Parent=Msa1373340-mRNA-1
tig0019430 exon 27803 27856 27803 ID=Msa1373340-mRNA-1:exon:3323;Parent=Msa1373340-mRNA-1
tig0019430 exon 27934 28263 27934 ID=Msa1373340-mRNA-1:exon:3322;Parent=Msa1373340-mRNA-1
tig0019430 five_prime_UTR 28162 28263 28162 ID=Msa1373340-mRNA-1:five_prime_utr;Parent=Msa1373340-mRNA-1
tig0019430 CDS 27934 28161 27934 ID=Msa1373340-mRNA-1:cds;Parent=Msa1373340-mRNA-1
tig0019430 CDS 27803 27856 27803 ID=Msa1373340-mRNA-1:cds;Parent=Msa1373340-mRNA-1
tig0019430 CDS 27633 27707 27633 ID=Msa1373340-mRNA-1:cds;Parent=Msa1373340-mRNA-1
tig0019430 CDS 27319 27438 27319 ID=Msa1373340-mRNA-1:cds;Parent=Msa1373340-mRNA-1
tig0019430 CDS 26588 26779 26588 ID=Msa1373340-mRNA-1:cds;Parent=Msa1373340-mRNA-1
tig0019430 CDS 26351 26434 26351 ID=Msa1373340-mRNA-1:cds;Parent=Msa1373340-mRNA-1
tig0019430 CDS 26176 26268 26176 ID=Msa1373340-mRNA-1:cds;Parent=Msa1373340-mRNA-1
tig0019430 CDS 25962 26015 25962 ID=Msa1373340-mRNA-1:cds;Parent=Msa1373340-mRNA-1
tig0019430 CDS 25796 25875 25796 ID=Msa1373340-mRNA-1:cds;Parent=Msa1373340-mRNA-1
tig0019430 CDS 25130 25237 25130 ID=Msa1373340-mRNA-1:cds;Parent=Msa1373340-mRNA-1
tig0019430 CDS 24969 25044 24969 ID=Msa1373340-mRNA-1:cds;Parent=Msa1373340-mRNA-1
tig0019430 three_prime_UTR 24765 24968 24765 ID=Msa1373340-mRNA-1:three_prime_utr;Parent=Msa1373340-mRNA-1
Gene Sequence

>Msa1373340

ATGGCTCTCACTCTCAGAGTTGTGAATGTAAACAGTATAGGATTTGAGTCATGTTCACGTTGTTCAACTTTTGTTTCTCCCAATCCCTCAAATTCTCGCTTCGTGTCTGCTGGGTGTTCTAAAGTTGAGCAAATTTCAGTTGTTACTGAAGAATCTGAAAACTCACTCATCCAAGCTCTTGTTGGCATCCAAGGACGTGGACGTTCTTCTTCTCCACAGCAACTCAACGCTATTGAGCGTGCTATTCAAGTCCTAGAACGTATAGGGGGTGTGTCTGATCCGACAAATTCAAGTTTGATTGAGGGTCGCTGGCAGCTCATTTTCACTACAAGACCTGGAACAGCATCACCCATTCAGAGAACATTTGTTGGGGTTGATTTTTTTAGTGTATTTCAAGAGGTTTATCTTCAAACAAATGATCCACGCGTAACCAATATTGTGTCATTTTCTGATGCCATCGGTGAGCTCAAAGTTGAGGCAGCAGCATCCATTGGAGATGGAAAAAGAATCCTTTTTAGGTTTGACAGAGCTGCCTTTTCTTTCAAATTTCTTCCATTTAAAGTTCCATATCCAGTTCCATTTAAGCTACTCGGAGATGAAGCAAAGGGTTGGTTAGACACCACATACTTGTCGCATTCAGGAAACCTTCGTATCTCGAGAGGGAATAAGGGAACCACATTTGTGCTGCAGAAGCAAACTGAACCTAGACAAAAGTTATTAACAGCAATTTCATCGGGGGTGGGTGTTCGAGAGGCAATAGATAAACTCATTTCCTTAAATAAGAATTCTGGGGAAGAAGATCCAGAACTAGAAGAGGGCGAGTGGCAGATGATATGGAATTCACAGACTGTGACGGATAGTTGGTTAGAGAATGCTGCCAATGGTCTGATGGGAAAGCAGATTGTTGGGGAGAATGGACAAATAAAGTACGTGGTTAATATCTTGCTTGGGCTGAAGTTCTCCATGTCTGGAATTTTTGTAAAAAGTAGGCCCAAAGTGTACGAGGTTACAATGGATGATGCAGCCATAATTGGTGGCCCATTTGGATATCCCCTGGAATTTGGCAAGAAGTTCATCTTGGAGATTCTATTCAATGATGGTAAGGTCAGAATTAGCCGAGGAGACAATCAAATTATTTTCGTACATACTCGCACAAATGCATAG

Protein sequence

>Msa1373340

MALTLRVVNVNSIGFESCSRCSTFVSPNPSNSRFVSAGCSKVEQISVVTEESENSLIQALVGIQGRGRSSSPQQLNAIERAIQVLERIGGVSDPTNSSLIEGRWQLIFTTRPGTASPIQRTFVGVDFFSVFQEVYLQTNDPRVTNIVSFSDAIGELKVEAAASIGDGKRILFRFDRAAFSFKFLPFKVPYPVPFKLLGDEAKGWLDTTYLSHSGNLRISRGNKGTTFVLQKQTEPRQKLLTAISSGVGVREAIDKLISLNKNSGEEDPELEEGEWQMIWNSQTVTDSWLENAANGLMGKQIVGENGQIKYVVNILLGLKFSMSGIFVKSRPKVYEVTMDDAAIIGGPFGYPLEFGKKFILEILFNDGKVRISRGDNQIIFVHTRTNA*