AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1339250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1339250 MtrunA17_Chr4g0035641 93.968 315 13 1 1 309 1 315 0.0 597
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1339250 AT2G21385.1 68.045 266 84 1 45 309 40 305 2.23e-130 375
Msa1339250 AT2G21385.2 70.485 227 67 0 83 309 1 227 5.21e-117 338
Msa1339250 AT2G21385.5 70.485 227 67 0 83 309 1 227 5.21e-117 338
Msa1339250 AT2G21385.3 70.485 227 67 0 83 309 1 227 5.21e-117 338
Msa1339250 AT2G21385.4 68.778 221 68 1 45 264 40 260 3.04e-106 312

Find 123 sgRNAs with CRISPR-Local

Find 422 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTAGATTCAATGCCTTTC+AGG 0.166657 tig0003042:+89532 None:intergenic
GATAAAGACACCTTGGATTA+TGG 0.246322 tig0003042:+92629 None:intergenic
TTTGAGTGCCTGAGGATCTT+TGG 0.256669 tig0003042:+94118 None:intergenic
TGAGATTGTTCAAGTGCTTC+AGG 0.266593 tig0003042:-89505 Msa1339250:three_prime_UTR
TTGCTTTCAATCCGGGCTTC+TGG 0.274329 tig0003042:-94541 Msa1339250:CDS
AACTATAAACAAACCTTTCA+TGG 0.312511 tig0003042:+93126 None:intergenic
GCATATGGAATTGTGAAAAT+AGG 0.317348 tig0003042:-89119 Msa1339250:three_prime_UTR
ATATTGTTCCATTCTTCTTC+AGG 0.317789 tig0003042:+89814 None:intergenic
ATGCTATACCTTTCTACATT+TGG 0.318027 tig0003042:-89686 Msa1339250:CDS
ATGATGAAGGAGAGATTTCT+TGG 0.319841 tig0003042:-94145 Msa1339250:CDS
TCCATGCTTTCTTTCCTCAT+TGG 0.331393 tig0003042:-89612 Msa1339250:three_prime_UTR
TTGAGTGCCTGAGGATCTTT+GGG 0.334915 tig0003042:+94119 None:intergenic
ATCATCTCATTGATATGCTT+CGG 0.342932 tig0003042:-95512 Msa1339250:CDS
AGTCTTCTTAAAAGCTTCTT+CGG 0.347827 tig0003042:+95545 None:intergenic
TAGATTTGTTTACTAGCATA+TGG 0.355618 tig0003042:-89134 Msa1339250:three_prime_UTR
TCCTTCATTGTCATTGTGAT+TGG 0.356186 tig0003042:+89026 None:intergenic
ATACTTTATTGCCAGATTGT+AGG 0.363099 tig0003042:+89162 None:intergenic
GCAGAAAGATTATGAAGAAT+TGG 0.372033 tig0003042:-94373 Msa1339250:intron
TTTGTCCTGATGCCAAAGTT+TGG 0.378152 tig0003042:-89212 Msa1339250:three_prime_UTR
CATGATGATGAATGTGGATT+AGG 0.381665 tig0003042:+95923 None:intergenic
CCTGGAGATGGGTGGGCAGC+TGG 0.383273 tig0003042:-89450 Msa1339250:three_prime_UTR
CACCTTGGATTATGGTTTCA+AGG 0.384019 tig0003042:+92637 None:intergenic
TTGATCAAAGGTTTGACAAT+TGG 0.384323 tig0003042:-89790 Msa1339250:CDS
AACATCCTTGCTTTCAATCC+GGG 0.396318 tig0003042:-94548 Msa1339250:CDS
TCCTCAGGCACTCAAATTGA+TGG 0.396968 tig0003042:-94111 Msa1339250:CDS
TGTATTGTATGGTTGGGATT+TGG 0.398807 tig0003042:-96072 Msa1339250:five_prime_UTR
AGCTTCTTCGGCTTCTTGAT+TGG 0.402730 tig0003042:+95557 None:intergenic
TCATCTCATTGATATGCTTC+GGG 0.406209 tig0003042:-95511 Msa1339250:CDS
TGTTCAAGTGCTTCAGGGCC+AGG 0.407356 tig0003042:-89499 Msa1339250:three_prime_UTR
GTGAGAGAGTTTGTATTGTA+TGG 0.410509 tig0003042:-96083 Msa1339250:five_prime_UTR
AAACATCCTTGCTTTCAATC+CGG 0.413335 tig0003042:-94549 Msa1339250:CDS
CATTATTCTCATTCTTCAGC+TGG 0.420067 tig0003042:+95991 None:intergenic
ACCCTCCAAACTTTGGCATC+AGG 0.421669 tig0003042:+89207 None:intergenic
GGCACTCAAATTGATGGAAA+TGG 0.421931 tig0003042:-94105 Msa1339250:intron
TTACTTCAAATTCGAGAAAG+AGG 0.422212 tig0003042:-95718 Msa1339250:intron
ACATTTGACCCTCCAAACTT+TGG 0.436857 tig0003042:+89200 None:intergenic
GGTCAAGCTAATACATATAG+TGG 0.443759 tig0003042:-89366 Msa1339250:three_prime_UTR
GAGAGTTTGTATTGTATGGT+TGG 0.456997 tig0003042:-96079 Msa1339250:five_prime_UTR
CAGTAGAATTTCTTCATACC+TGG 0.458020 tig0003042:-89468 Msa1339250:three_prime_UTR
TTGGGATTTGGATACGCAAA+AGG 0.458405 tig0003042:-96060 Msa1339250:five_prime_UTR
TTGGCCTCCCAAAGATCCTC+AGG 0.460172 tig0003042:-94126 Msa1339250:CDS
AAGGGAGATGGTGATAAGCC+TGG 0.469587 tig0003042:-93217 Msa1339250:CDS
AAGGGAACAAGCAGGACAGC+TGG 0.472440 tig0003042:-93591 Msa1339250:CDS
AAACCTGTGATTAATGATGA+AGG 0.474405 tig0003042:-94158 Msa1339250:CDS
CAGCTGGAGCGAGGGATAGT+TGG 0.476200 tig0003042:+96007 None:intergenic
GCTTCCTCAAGCTACGTTCG+TGG 0.478742 tig0003042:+95750 None:intergenic
GGGATAGTTGGTTCAGTGGC+GGG 0.483629 tig0003042:+96019 None:intergenic
ATCTCCAGCACAAAACTAGC+TGG 0.483835 tig0003042:+89248 None:intergenic
TATTAATTAATCCTACAATC+TGG 0.492487 tig0003042:-89173 Msa1339250:three_prime_UTR
TTTCTTTCCTCATTGGCCGC+TGG 0.493271 tig0003042:-89605 Msa1339250:three_prime_UTR
AATTTCTTCATACCTGGAGA+TGG 0.493758 tig0003042:-89462 Msa1339250:three_prime_UTR
AAGACAGCATAAAGCTCCTC+TGG 0.495322 tig0003042:+89751 None:intergenic
GCCTATATTGAGCAGGCAAA+GGG 0.497333 tig0003042:-93235 Msa1339250:intron
ATGAACAACATCAGTTAAGC+AGG 0.498292 tig0003042:+89643 None:intergenic
GCACAGCTCCTGAAGAAGAA+TGG 0.501789 tig0003042:-89822 Msa1339250:intron
AGAGAGAGTATTAGCGGAAG+CGG 0.506161 tig0003042:+95952 None:intergenic
GAGATTGTTCAAGTGCTTCA+GGG 0.507093 tig0003042:-89504 Msa1339250:three_prime_UTR
GTTCAAGTGCTTCAGGGCCA+GGG 0.509174 tig0003042:-89498 Msa1339250:three_prime_UTR
AATTCTACTGTGGTTTCCCC+TGG 0.510610 tig0003042:+89481 None:intergenic
AGAGTTTGTATTGTATGGTT+GGG 0.512580 tig0003042:-96078 Msa1339250:five_prime_UTR
ATCAAAGGTTTGACAATTGG+TGG 0.513409 tig0003042:-89787 Msa1339250:CDS
CCAGCTGCCCACCCATCTCC+AGG 0.513874 tig0003042:+89450 None:intergenic
TGCAACATAGCCTCAAGCCC+AGG 0.514404 tig0003042:+93199 None:intergenic
TCTCCTTCATCATTAATCAC+AGG 0.515609 tig0003042:+94155 None:intergenic
AAAAGAAGAGAGAGTATTAG+CGG 0.518433 tig0003042:+95946 None:intergenic
TCCTGATGCCAAAGTTTGGA+GGG 0.524232 tig0003042:-89208 Msa1339250:three_prime_UTR
ATCATTAGGAAATAAATCAA+AGG 0.530590 tig0003042:-93610 Msa1339250:intron
AAAGGTTTGACAATTGGTGG+TGG 0.535366 tig0003042:-89784 Msa1339250:CDS
AAGGTTTGACAATTGGTGGT+GGG 0.540352 tig0003042:-89783 Msa1339250:CDS
GCTTGAGGCTATGTTGCAAA+AGG 0.540785 tig0003042:-93194 Msa1339250:CDS
GTCCTGATGCCAAAGTTTGG+AGG 0.541571 tig0003042:-89209 Msa1339250:three_prime_UTR
GAGATGAACCAAATGTAGAA+AGG 0.541995 tig0003042:+89678 None:intergenic
TCATTAGGAAATAAATCAAA+GGG 0.542609 tig0003042:-93609 Msa1339250:intron
ATTTCTTCATACCTGGAGAT+GGG 0.546570 tig0003042:-89461 Msa1339250:three_prime_UTR
ACTCTGTCAGAATCCGTTGT+TGG 0.548837 tig0003042:+89556 None:intergenic
CTCATTCTTCAGCTGGAGCG+AGG 0.550753 tig0003042:+95998 None:intergenic
TGGTGATAAGCCTGGGCTTG+AGG 0.551600 tig0003042:-93209 Msa1339250:CDS
TGCTGTCTTGAAGAAACGAA+TGG 0.551775 tig0003042:-89737 Msa1339250:CDS
GCCAATGAGGAAAGAAAGCA+TGG 0.552586 tig0003042:+89611 None:intergenic
TCCATCAATTTGAGTGCCTG+AGG 0.552941 tig0003042:+94110 None:intergenic
GATGTATAAATGCGGATAAG+TGG 0.556053 tig0003042:-89300 Msa1339250:three_prime_UTR
CTTCATACCTGGAGATGGGT+GGG 0.558882 tig0003042:-89457 Msa1339250:three_prime_UTR
CAAGCAGGACAGCTGGATGA+AGG 0.559063 tig0003042:-93584 Msa1339250:CDS
TCTTGTGGTTAACAAGACTA+AGG 0.559884 tig0003042:-94325 Msa1339250:intron
ATAAATGCGGATAAGTGGAT+TGG 0.561613 tig0003042:-89295 Msa1339250:three_prime_UTR
ATTGAGCAGGCAAAGGGAGA+TGG 0.561640 tig0003042:-93229 Msa1339250:intron
TTCAAGTGCTTCAGGGCCAG+GGG 0.563388 tig0003042:-89497 Msa1339250:three_prime_UTR
TTATGAAGAATTGGCTGCAA+CGG 0.568155 tig0003042:-94364 Msa1339250:CDS
AAACGCACTTATGCCATGAA+AGG 0.571968 tig0003042:-93139 Msa1339250:intron
TCTTCATACCTGGAGATGGG+TGG 0.572286 tig0003042:-89458 Msa1339250:three_prime_UTR
AGGGAGATGGTGATAAGCCT+GGG 0.573055 tig0003042:-93216 Msa1339250:CDS
AGAAGCCCGGATTGAAAGCA+AGG 0.575898 tig0003042:+94543 None:intergenic
GCAAGTCGTATCCAGAAGCC+CGG 0.576411 tig0003042:+94530 None:intergenic
TTCCTTGAAACCATAATCCA+AGG 0.576458 tig0003042:-92639 Msa1339250:intron
GTCTGCAACAGATGTCCTGA+AGG 0.577122 tig0003042:-94189 Msa1339250:CDS
ATCTGATACTTGCAAGTCTG+AGG 0.579623 tig0003042:-94501 Msa1339250:CDS
TGGTGGGGATGTTTCACCAG+AGG 0.579856 tig0003042:-89767 Msa1339250:CDS
TCATTCTTCAGCTGGAGCGA+GGG 0.582134 tig0003042:+95999 None:intergenic
GAACGTACTTGTTGTAGTAG+TGG 0.583186 tig0003042:+95899 None:intergenic
TATGAATGTGGTGGATCTTG+TGG 0.585958 tig0003042:-94340 Msa1339250:CDS
TGGGATTTGGATACGCAAAA+GGG 0.587572 tig0003042:-96059 Msa1339250:five_prime_UTR
AGCTGGAATGTCATAAGCCA+TGG 0.589362 tig0003042:-89433 Msa1339250:three_prime_UTR
AGTGCCTGAGGATCTTTGGG+AGG 0.589606 tig0003042:+94122 None:intergenic
TTGGTTCAGTGGCGGGAGAG+AGG 0.591647 tig0003042:+96026 None:intergenic
CTTGCAAGTATCAGATCTTG+CGG 0.612917 tig0003042:+94508 None:intergenic
GCGAGGGATAGTTGGTTCAG+TGG 0.619018 tig0003042:+96015 None:intergenic
AGTGGACATGATGATGAATG+TGG 0.621891 tig0003042:+95917 None:intergenic
AGGGATAGTTGGTTCAGTGG+CGG 0.624063 tig0003042:+96018 None:intergenic
AGGTTTGACAATTGGTGGTG+GGG 0.624891 tig0003042:-89782 Msa1339250:CDS
AACATCAGTTAAGCAGGAGA+CGG 0.628679 tig0003042:+89649 None:intergenic
ATAAATCAAAGGGAACAAGC+AGG 0.631506 tig0003042:-93599 Msa1339250:CDS
GGCTGCAACGGTTATGAATG+TGG 0.634483 tig0003042:-94352 Msa1339250:CDS
GTTGTGCACTAACTTCAGCA+AGG 0.635910 tig0003042:+93558 None:intergenic
AGGGAGGTTCTTACCAACAA+CGG 0.641102 tig0003042:-89569 Msa1339250:three_prime_UTR
GCATCATGTAGAAATTGCCA+TGG 0.646473 tig0003042:+89416 None:intergenic
TATGCTGCTGCTGATTGCAA+AGG 0.652703 tig0003042:+89066 None:intergenic
CGAACCACGAACGTAGCTTG+AGG 0.652848 tig0003042:-95754 Msa1339250:CDS
TCTGCAACAGATGTCCTGAA+GGG 0.670452 tig0003042:-94188 Msa1339250:CDS
ATTCTGACAGAGTACCTGAA+AGG 0.676028 tig0003042:-89546 Msa1339250:three_prime_UTR
TTAGAAAATCATACTTCACG+AGG 0.689692 tig0003042:+95480 None:intergenic
GGTATGAAGAAATTCTACTG+TGG 0.699205 tig0003042:+89471 None:intergenic
AAAGTAGCGATGTATAAATG+CGG 0.708137 tig0003042:-89308 Msa1339250:three_prime_UTR
TGCAACGGTTATGAATGTGG+TGG 0.756086 tig0003042:-94349 Msa1339250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATAATTAAATTAATCAA+TGG - tig0003042:89928-89947 Msa1339250:intron 10.0%
!! TCATAATTAAATTAATCAAT+GGG - tig0003042:89929-89948 Msa1339250:intron 10.0%
!!! ATTTACATTTTATAGTAGAT+AGG - tig0003042:89723-89742 Msa1339250:CDS 15.0%
!!! TTTTTATTTCTGTTTATTGT+TGG - tig0003042:90742-90761 Msa1339250:intron 15.0%
!! AGATTATATATACAAATTTG+TGG + tig0003042:91392-91411 None:intergenic 15.0%
!! TAAATTATCAAAATAAAAGC+TGG + tig0003042:91433-91452 None:intergenic 15.0%
!! AAAAATTCATCATAATCATT+AGG - tig0003042:91517-91536 Msa1339250:intron 15.0%
!!! TCAATATAATATTTGAAACA+AGG - tig0003042:92283-92302 Msa1339250:intron 15.0%
!! TTTCTATAACATAAATGATT+AGG + tig0003042:92540-92559 None:intergenic 15.0%
!!! AATTTGGTTTGATAAATTTA+AGG - tig0003042:93545-93564 Msa1339250:intron 15.0%
!!! ATTTGGTTTGATAAATTTAA+GGG - tig0003042:93546-93565 Msa1339250:intron 15.0%
!! TATCAGATTGTAAAAATTAA+CGG + tig0003042:93717-93736 None:intergenic 15.0%
!!! AATGTATCAATTTAAGTTAA+CGG - tig0003042:94284-94303 Msa1339250:intron 15.0%
!! GAAATGAATTATGATATATA+AGG + tig0003042:94590-94609 None:intergenic 15.0%
!!! CTTATAGTTCTAATTAAATA+AGG + tig0003042:94612-94631 None:intergenic 15.0%
!! TGCATAATTAATGTAAGAAA+TGG + tig0003042:89271-89290 None:intergenic 20.0%
!!! TTTGTCATTTTTGCATTAAT+CGG + tig0003042:89896-89915 None:intergenic 20.0%
!!! TAATTGATAAATTTTTGCCA+AGG - tig0003042:90519-90538 Msa1339250:intron 20.0%
!!! TATTTTATTCATTGCTTCTT+AGG - tig0003042:90884-90903 Msa1339250:intron 20.0%
!!! TGATAATTTATTTTTGCCAA+TGG - tig0003042:91443-91462 Msa1339250:intron 20.0%
!!! GATAATTTATTTTTGCCAAT+GGG - tig0003042:91444-91463 Msa1339250:intron 20.0%
!! TTGCTAAAAATATACGTTAA+AGG + tig0003042:91479-91498 None:intergenic 20.0%
!! ATCATTAGGAAATAAATCAA+AGG - tig0003042:91531-91550 Msa1339250:intron 20.0%
!! TCATTAGGAAATAAATCAAA+GGG - tig0003042:91532-91551 Msa1339250:intron 20.0%
!! CTGACAAATTAAATTATTAC+AGG + tig0003042:91651-91670 None:intergenic 20.0%
!! TATTGCTAATCATCTTAATT+TGG + tig0003042:92191-92210 None:intergenic 20.0%
!!! TAATTCTTTCTAGAAAACAA+GGG + tig0003042:92600-92619 None:intergenic 20.0%
!!! ATAATTCTTTCTAGAAAACA+AGG + tig0003042:92601-92620 None:intergenic 20.0%
!! AGAAAGAATTATGTTGAATT+TGG - tig0003042:92609-92628 Msa1339250:intron 20.0%
!! TGATAGAAACAAATATTTGA+AGG - tig0003042:92796-92815 Msa1339250:intron 20.0%
!! AGAATCCATAATTGAAAATT+AGG + tig0003042:93419-93438 None:intergenic 20.0%
!!! TTTGGTTTGATAAATTTAAG+GGG - tig0003042:93547-93566 Msa1339250:intron 20.0%
!! TTTATACATATATGATAGAG+AGG - tig0003042:93914-93933 Msa1339250:intron 20.0%
!! TTGAATAAAATCAATCCAAT+TGG - tig0003042:93940-93959 Msa1339250:intron 20.0%
!! TGAATATTATGTCTCTTTAA+TGG + tig0003042:94161-94180 None:intergenic 20.0%
!! AAAATATATTTATTCGATGC+TGG - tig0003042:94190-94209 Msa1339250:CDS 20.0%
!! TTAAGTTAACGGAAATTTAA+CGG - tig0003042:94295-94314 Msa1339250:intron 20.0%
!!! ATTTAACGGTGTTAATAAAA+AGG - tig0003042:94309-94328 Msa1339250:intron 20.0%
!!! TTTAACGGTGTTAATAAAAA+GGG - tig0003042:94310-94329 Msa1339250:intron 20.0%
!! TAATTTCCCCTAAATTTAAA+AGG - tig0003042:94435-94454 Msa1339250:intron 20.0%
!! ACTAGACTCTTAATTAAATA+AGG + tig0003042:94911-94930 None:intergenic 20.0%
!!! TCTAGTCTTAATGAAAATAA+GGG - tig0003042:94925-94944 Msa1339250:intron 20.0%
!! CTTGTGAATTATATTGATAT+TGG + tig0003042:94995-95014 None:intergenic 20.0%
!! TATTAATTAATCCTACAATC+TGG - tig0003042:95968-95987 Msa1339250:CDS 20.0%
! ATAGGTATGTTTCATGATTT+AGG - tig0003042:89741-89760 Msa1339250:CDS 25.0%
!! AGGACTCAATTTTATGTATT+AGG - tig0003042:89761-89780 Msa1339250:CDS 25.0%
!! ACTCAATTTTATGTATTAGG+CGG - tig0003042:89764-89783 Msa1339250:CDS 25.0%
! CTAATTTGACCAAACAATTT+GGG + tig0003042:89861-89880 None:intergenic 25.0%
! CAATAAATGTTTGAGCTTAT+AGG + tig0003042:89979-89998 None:intergenic 25.0%
! GAAAAAAATTATCACCAAAC+AGG - tig0003042:90039-90058 Msa1339250:intron 25.0%
!! ACAAAATTTTGAGCTTATAG+CGG + tig0003042:90103-90122 None:intergenic 25.0%
! AAATCAATTAGATGAGACTT+AGG - tig0003042:91201-91220 Msa1339250:intron 25.0%
! TACTAATCAATGTGATAGAT+AGG - tig0003042:91250-91269 Msa1339250:intron 25.0%
! AATCTTTCTTCTCTTCTAAA+TGG - tig0003042:91407-91426 Msa1339250:intron 25.0%
! CTAAGGATAGTATAGATAAA+AGG + tig0003042:91708-91727 None:intergenic 25.0%
! ATAAAAGCTAATGAGTTCTA+AGG + tig0003042:91725-91744 None:intergenic 25.0%
!! ACTATTTTCATTCCTATGTT+TGG - tig0003042:91774-91793 Msa1339250:intron 25.0%
! AACTATAAACAAACCTTTCA+TGG + tig0003042:92018-92037 None:intergenic 25.0%
! AATAGATGATTATTTGCTTG+TGG - tig0003042:92046-92065 Msa1339250:intron 25.0%
! ATAGATGATTATTTGCTTGT+GGG - tig0003042:92047-92066 Msa1339250:intron 25.0%
! TAATTGAACAGGAGAAAAAT+TGG - tig0003042:92135-92154 Msa1339250:intron 25.0%
! AATTGAACAGGAGAAAAATT+GGG - tig0003042:92136-92155 Msa1339250:intron 25.0%
! AACAAATATTTGAAGGTCAT+TGG - tig0003042:92803-92822 Msa1339250:intron 25.0%
! TTTACCGTATTTAGACTATT+GGG + tig0003042:93070-93089 None:intergenic 25.0%
!! TTTTACCGTATTTAGACTAT+TGG + tig0003042:93071-93090 None:intergenic 25.0%
! AAAACAAAATCAACACTGAA+AGG + tig0003042:93353-93372 None:intergenic 25.0%
!! CGATTCCTAATTTTCAATTA+TGG - tig0003042:93411-93430 Msa1339250:intron 25.0%
! TTGTCGAAATATCTCTTATA+TGG - tig0003042:93511-93530 Msa1339250:intron 25.0%
!! TATGGATTGTTCATTCAATT+TGG - tig0003042:93529-93548 Msa1339250:intron 25.0%
! GTCATTTAGATAAAACTCAA+GGG + tig0003042:94403-94422 None:intergenic 25.0%
!! TGTCATTTAGATAAAACTCA+AGG + tig0003042:94402-94421 None:intergenic 25.0%
! AATTGATGAAAACTTAAGAG+AGG + tig0003042:93646-93665 None:intergenic 25.0%
!! TTAACTTGATTGTGCTTAAA+GGG - tig0003042:93776-93795 Msa1339250:intron 25.0%
! ATTCATTCTTTAACACCAAT+TGG + tig0003042:93958-93977 None:intergenic 25.0%
! GATTAAAAGAACTGCAATTA+TGG - tig0003042:94071-94090 Msa1339250:intron 25.0%
! ACAAAGGAAGGAAAATATAT+GGG - tig0003042:94128-94147 Msa1339250:CDS 25.0%
!!! CATTGATATCTCTCTTTTTT+TGG - tig0003042:94232-94251 Msa1339250:intron 25.0%
! TCTAATTGATGAAAACTCAA+GGG - tig0003042:94342-94361 Msa1339250:CDS 25.0%
!! TGTCATTTAGATAAAACTCA+AGG - tig0003042:94402-94421 Msa1339250:intron 25.0%
! GTCATTTAGATAAAACTCAA+GGG - tig0003042:94403-94422 Msa1339250:intron 25.0%
!! TGTGCTACCTTTTAAATTTA+GGG + tig0003042:94445-94464 None:intergenic 25.0%
!! TTGTGCTACCTTTTAAATTT+AGG + tig0003042:94446-94465 None:intergenic 25.0%
! TTATGATATATAAGGAAACG+TGG + tig0003042:94582-94601 None:intergenic 25.0%
!!! TATCTCCATGATTTTTTTCT+TGG - tig0003042:94743-94762 Msa1339250:intron 25.0%
! ATTGACCAAGAAAAAAATCA+TGG + tig0003042:94751-94770 None:intergenic 25.0%
! TCATGATATACAAGAAAACA+TGG + tig0003042:94882-94901 None:intergenic 25.0%
!!! GTCTAGTCTTAATGAAAATA+AGG - tig0003042:94924-94943 Msa1339250:intron 25.0%
! CACATACTATTGAAGTTATA+GGG + tig0003042:95023-95042 None:intergenic 25.0%
! ACACATACTATTGAAGTTAT+AGG + tig0003042:95024-95043 None:intergenic 25.0%
! TCTTAATCAGTAAGTCATAT+TGG + tig0003042:95073-95092 None:intergenic 25.0%
!! AGATTATATGAAAGGAGTTT+TGG - tig0003042:95106-95125 Msa1339250:intron 25.0%
!! AAGACTAAAACATTTTTCCA+GGG + tig0003042:95160-95179 None:intergenic 25.0%
!! TAACATAAGTTGGAGATAAA+AGG + tig0003042:95261-95280 None:intergenic 25.0%
!!! CATCAAGATCAACTATTTTT+GGG - tig0003042:95290-95309 Msa1339250:intron 25.0%
!!! TGGAACAATATTTTGATCAA+AGG - tig0003042:95339-95358 Msa1339250:intron 25.0%
!! TAGATTTGTTTACTAGCATA+TGG - tig0003042:96007-96026 Msa1339250:five_prime_UTR 25.0%
AGAGTTTGTATTGTATGGTT+GGG - tig0003042:89063-89082 Msa1339250:three_prime_UTR 30.0%
!! AAAAGAAGAGAGAGTATTAG+CGG + tig0003042:89198-89217 None:intergenic 30.0%
ATCATTTCCATCCTTTACTT+TGG - tig0003042:89327-89346 Msa1339250:three_prime_UTR 30.0%
TTACTTCAAATTCGAGAAAG+AGG - tig0003042:89423-89442 Msa1339250:three_prime_UTR 30.0%
TTTGAATGAAATTGCGTGTT+TGG - tig0003042:89529-89548 Msa1339250:three_prime_UTR 30.0%
AGTCTTCTTAAAAGCTTCTT+CGG + tig0003042:89599-89618 None:intergenic 30.0%
ATCATCTCATTGATATGCTT+CGG - tig0003042:89629-89648 Msa1339250:three_prime_UTR 30.0%
TTAGAAAATCATACTTCACG+AGG + tig0003042:89664-89683 None:intergenic 30.0%
GCTAATTTGACCAAACAATT+TGG + tig0003042:89862-89881 None:intergenic 30.0%
ACAAATATATTCCTCTTGCA+TGG + tig0003042:90160-90179 None:intergenic 30.0%
AAGCGATTATTAACAAACCT+TGG + tig0003042:90539-90558 None:intergenic 30.0%
GCAGAAAGATTATGAAGAAT+TGG - tig0003042:90768-90787 Msa1339250:intron 30.0%
CAACATTGAACAATACTCAA+AGG + tig0003042:90860-90879 None:intergenic 30.0%
! CTTTGAGTATTGTTCAATGT+TGG - tig0003042:90858-90877 Msa1339250:intron 30.0%
AAACCTGTGATTAATGATGA+AGG - tig0003042:90983-91002 Msa1339250:intron 30.0%
! TGATTTTTCACAAAACCTGA+AGG + tig0003042:91187-91206 None:intergenic 30.0%
TTGTCACTGTTATAGTCATT+TGG + tig0003042:91230-91249 None:intergenic 30.0%
ACAGGTTAAATAAAAAGCAG+TGG + tig0003042:91633-91652 None:intergenic 30.0%
TTTCATTCCTATGTTTGGTT+TGG - tig0003042:91779-91798 Msa1339250:intron 30.0%
TTTCAAGCACTTAATTGAAC+AGG - tig0003042:92124-92143 Msa1339250:intron 30.0%
AGGAGAAAAATTGGGAAATA+GGG - tig0003042:92144-92163 Msa1339250:intron 30.0%
TCGTCATAATATTGTCTTCT+TGG - tig0003042:92365-92384 Msa1339250:intron 30.0%
! TCTTTTGTATTGTTCTTGCA+GGG - tig0003042:92455-92474 Msa1339250:intron 30.0%
! GTCCTATTTGTATCGTTTTA+TGG - tig0003042:92727-92746 Msa1339250:intron 30.0%
GACCATAAAACGATACAAAT+AGG + tig0003042:92732-92751 None:intergenic 30.0%
AATACACGAGAGAAAATTCA+AGG + tig0003042:92850-92869 None:intergenic 30.0%
TAGTCCCAATAGTCTAAATA+CGG - tig0003042:93063-93082 Msa1339250:intron 30.0%
TTTGTACTTGAGTACTCAAT+TGG - tig0003042:93144-93163 Msa1339250:CDS 30.0%
ACTATGTTCTTGTGAATTAC+AGG + tig0003042:93201-93220 None:intergenic 30.0%
!!! TATGTTTACTTTTTCGTCTG+AGG - tig0003042:93225-93244 Msa1339250:intron 30.0%
AGAACACAGCAAAATCAATA+TGG + tig0003042:93268-93287 None:intergenic 30.0%
! GAAAATTAGGAATCGTTTTG+TGG + tig0003042:93406-93425 None:intergenic 30.0%
TCAATTATGGATTCTCTTGT+TGG - tig0003042:93424-93443 Msa1339250:intron 30.0%
ATTTAGATAAAACTCAAGGG+AGG + tig0003042:94406-94425 None:intergenic 30.0%
! TTAACTGTGTTAGTATCGAA+GGG + tig0003042:93681-93700 None:intergenic 30.0%
! ATTAACTGTGTTAGTATCGA+AGG + tig0003042:93682-93701 None:intergenic 30.0%
TTCGATACTAACACAGTTAA+TGG - tig0003042:93681-93700 Msa1339250:intron 30.0%
! GTTAACTTGATTGTGCTTAA+AGG - tig0003042:93775-93794 Msa1339250:intron 30.0%
! GTATAAGATGACTCGAATTT+TGG - tig0003042:94000-94019 Msa1339250:intron 30.0%
GACAAAGGAAGGAAAATATA+TGG - tig0003042:94127-94146 Msa1339250:CDS 30.0%
CTGGATTATGAGAGATTATT+GGG - tig0003042:94209-94228 Msa1339250:intron 30.0%
!!! GATATCTCTCTTTTTTTGGT+TGG - tig0003042:94236-94255 Msa1339250:intron 30.0%
GTCTAATTGATGAAAACTCA+AGG - tig0003042:94341-94360 Msa1339250:CDS 30.0%
ATTTAGATAAAACTCAAGGG+AGG - tig0003042:94406-94425 Msa1339250:intron 30.0%
! GTGCTACCTTTTAAATTTAG+GGG + tig0003042:94444-94463 None:intergenic 30.0%
GAGATCATGTTGAAGTTATT+GGG + tig0003042:94640-94659 None:intergenic 30.0%
TGAGATCATGTTGAAGTTAT+TGG + tig0003042:94641-94660 None:intergenic 30.0%
AATAATGACAAGACATGTCA+TGG + tig0003042:94679-94698 None:intergenic 30.0%
! TGAAGTTCTCTTTTTGTTAG+TGG - tig0003042:94801-94820 Msa1339250:intron 30.0%
! ACTTACTGATTAAGAGTCAA+AGG - tig0003042:95078-95097 Msa1339250:intron 30.0%
AGGTGACTAGATTATATGAA+AGG - tig0003042:95098-95117 Msa1339250:intron 30.0%
! AGACTAAAACATTTTTCCAG+GGG + tig0003042:95159-95178 None:intergenic 30.0%
! GAAGACTAAAACATTTTTCC+AGG + tig0003042:95161-95180 None:intergenic 30.0%
GCAAGATATGTAACATAAGT+TGG + tig0003042:95271-95290 None:intergenic 30.0%
! GCATCAAGATCAACTATTTT+TGG - tig0003042:95289-95308 Msa1339250:intron 30.0%
ATATTGTTCCATTCTTCTTC+AGG + tig0003042:95330-95349 None:intergenic 30.0%
TTGATCAAAGGTTTGACAAT+TGG - tig0003042:95351-95370 Msa1339250:intron 30.0%
ATGCTATACCTTTCTACATT+TGG - tig0003042:95455-95474 Msa1339250:intron 30.0%
! TGATTTATGATTTTCAGAGC+AGG - tig0003042:95754-95773 Msa1339250:CDS 30.0%
AAAGTAGCGATGTATAAATG+CGG - tig0003042:95833-95852 Msa1339250:intron 30.0%
ATACTTTATTGCCAGATTGT+AGG + tig0003042:95982-96001 None:intergenic 30.0%
GCATATGGAATTGTGAAAAT+AGG - tig0003042:96022-96041 Msa1339250:five_prime_UTR 30.0%
GTGAGAGAGTTTGTATTGTA+TGG - tig0003042:89058-89077 Msa1339250:three_prime_UTR 35.0%
GAGAGTTTGTATTGTATGGT+TGG - tig0003042:89062-89081 Msa1339250:three_prime_UTR 35.0%
TGTATTGTATGGTTGGGATT+TGG - tig0003042:89069-89088 Msa1339250:three_prime_UTR 35.0%
CATTATTCTCATTCTTCAGC+TGG + tig0003042:89153-89172 None:intergenic 35.0%
! CATGATGATGAATGTGGATT+AGG + tig0003042:89221-89240 None:intergenic 35.0%
TCATCTCATTGATATGCTTC+GGG - tig0003042:89630-89649 Msa1339250:three_prime_UTR 35.0%
CATACTGAACCCAAATTGTT+TGG - tig0003042:89849-89868 Msa1339250:intron 35.0%
ATGACTAAGATAGACCTGTT+TGG + tig0003042:90056-90075 None:intergenic 35.0%
TCATCAGTTGATTACTGCAA+TGG + tig0003042:90307-90326 None:intergenic 35.0%
AAACATCCTTGCTTTCAATC+CGG - tig0003042:90592-90611 Msa1339250:intron 35.0%
AACTATACAGAAACTGTCCA+TGG + tig0003042:90702-90721 None:intergenic 35.0%
TTATGAAGAATTGGCTGCAA+CGG - tig0003042:90777-90796 Msa1339250:intron 35.0%
TCTTGTGGTTAACAAGACTA+AGG - tig0003042:90816-90835 Msa1339250:intron 35.0%
AATACTCAAAGGAGTGAAGA+GGG + tig0003042:90849-90868 None:intergenic 35.0%
TTACTATGTACTTGCTTTGC+AGG - tig0003042:90919-90938 Msa1339250:intron 35.0%
TCTCCTTCATCATTAATCAC+AGG + tig0003042:90989-91008 None:intergenic 35.0%
ATGATGAAGGAGAGATTTCT+TGG - tig0003042:90996-91015 Msa1339250:intron 35.0%
!!! CTCATTGATTTTAGCAAGAG+TGG - tig0003042:91074-91093 Msa1339250:intron 35.0%
ATTAAGCTTAATTCGCCTTC+AGG - tig0003042:91169-91188 Msa1339250:intron 35.0%
TCAATTAGATGAGACTTAGG+AGG - tig0003042:91204-91223 Msa1339250:intron 35.0%
GAGAAATTAGAAGAATGCAC+AGG + tig0003042:91305-91324 None:intergenic 35.0%
! TATTTGTGATGGAAGGTGAT+TGG - tig0003042:91356-91375 Msa1339250:intron 35.0%
TAAAGGTCATAACAACCCAT+TGG + tig0003042:91462-91481 None:intergenic 35.0%
ATAAATCAAAGGGAACAAGC+AGG - tig0003042:91542-91561 Msa1339250:intron 35.0%
ATACACACCAAACCAAACAT+AGG + tig0003042:91789-91808 None:intergenic 35.0%
CAGGAGAAAAATTGGGAAAT+AGG - tig0003042:92143-92162 Msa1339250:intron 35.0%
TGCTAGTCAACATATCTTCA+TGG - tig0003042:92393-92412 Msa1339250:intron 35.0%
AGTCAACATATCTTCATGGT+TGG - tig0003042:92397-92416 Msa1339250:intron 35.0%
AACATATCTTCATGGTTGGA+AGG - tig0003042:92401-92420 Msa1339250:intron 35.0%
! GTCTTTTGTATTGTTCTTGC+AGG - tig0003042:92454-92473 Msa1339250:intron 35.0%
TTCCTTGAAACCATAATCCA+AGG - tig0003042:92502-92521 Msa1339250:intron 35.0%
GATAAAGACACCTTGGATTA+TGG + tig0003042:92515-92534 None:intergenic 35.0%
TTAGGATGATAAAGACACCT+TGG + tig0003042:92522-92541 None:intergenic 35.0%
GTTGTTAGATCAAACCCAAT+TGG + tig0003042:92706-92725 None:intergenic 35.0%
TGTATTGAGACTCCTGTATA+AGG - tig0003042:92864-92883 Msa1339250:intron 35.0%
TTACTGAGTTCAGACTACTT+GGG + tig0003042:92900-92919 None:intergenic 35.0%
ATTACTGAGTTCAGACTACT+TGG + tig0003042:92901-92920 None:intergenic 35.0%
TGTAAACACTAGAAAGAGAG+TGG - tig0003042:93113-93132 Msa1339250:intron 35.0%
TCTTGTGTGCTCTATATTCT+CGG - tig0003042:93285-93304 Msa1339250:intron 35.0%
TGGCAGAAGATTTGTAAACT+TGG + tig0003042:93386-93405 None:intergenic 35.0%
! TGTAGGTTTTCAAACTACAG+GGG + tig0003042:93619-93638 None:intergenic 35.0%
! GTGTAGGTTTTCAAACTACA+GGG + tig0003042:93620-93639 None:intergenic 35.0%
! AGTGTAGGTTTTCAAACTAC+AGG + tig0003042:93621-93640 None:intergenic 35.0%
AACTTAAGAGAGGTTAGTGT+AGG + tig0003042:93636-93655 None:intergenic 35.0%
GCTGGATTATGAGAGATTAT+TGG - tig0003042:94208-94227 Msa1339250:intron 35.0%
AGAGGTTGGATTTGTATCAT+GGG - tig0003042:94259-94278 Msa1339250:intron 35.0%
! AACGGTGTTAATAAAAAGGG+TGG - tig0003042:94313-94332 Msa1339250:intron 35.0%
AATTGATGAAAACTCAAGGG+AGG - tig0003042:94345-94364 Msa1339250:CDS 35.0%
! AGTGTAGGTTTTCAAACTAG+AGG - tig0003042:94370-94389 Msa1339250:CDS 35.0%
! GTGTAGGTTTTCAAACTAGA+GGG - tig0003042:94371-94390 Msa1339250:CDS 35.0%
! TGTAGGTTTTCAAACTAGAG+GGG - tig0003042:94372-94391 Msa1339250:CDS 35.0%
TTCAGATGTCAAGAACTAGA+TGG + tig0003042:94705-94724 None:intergenic 35.0%
AGAACTTCAAAGAGAAAGCA+TGG + tig0003042:94790-94809 None:intergenic 35.0%
ATGGGACAGCTTGAAAAATT+GGG + tig0003042:94838-94857 None:intergenic 35.0%
AATGGGACAGCTTGAAAAAT+TGG + tig0003042:94839-94858 None:intergenic 35.0%
CCAATCCTAAGACTAGTAAT+GGG + tig0003042:94856-94875 None:intergenic 35.0%
GATTTCTGATTAACCTTCTC+CGG - tig0003042:95044-95063 Msa1339250:intron 35.0%
!! CAGTAAGTCATATTGGTTTC+CGG + tig0003042:95066-95085 None:intergenic 35.0%
ATCAAAGGTTTGACAATTGG+TGG - tig0003042:95354-95373 Msa1339250:intron 35.0%
GAGATGAACCAAATGTAGAA+AGG + tig0003042:95466-95485 None:intergenic 35.0%
ATGAACAACATCAGTTAAGC+AGG + tig0003042:95501-95520 None:intergenic 35.0%
GGTATGAAGAAATTCTACTG+TGG + tig0003042:95673-95692 None:intergenic 35.0%
CAGTAGAATTTCTTCATACC+TGG - tig0003042:95673-95692 Msa1339250:intron 35.0%
AATTTCTTCATACCTGGAGA+TGG - tig0003042:95679-95698 Msa1339250:intron 35.0%
ATTTCTTCATACCTGGAGAT+GGG - tig0003042:95680-95699 Msa1339250:intron 35.0%
GGTCAAGCTAATACATATAG+TGG - tig0003042:95775-95794 Msa1339250:CDS 35.0%
GATGTATAAATGCGGATAAG+TGG - tig0003042:95841-95860 Msa1339250:intron 35.0%
ATAAATGCGGATAAGTGGAT+TGG - tig0003042:95846-95865 Msa1339250:intron 35.0%
!! AGTTTTGTGCTGGAGATTAT+AGG - tig0003042:95899-95918 Msa1339250:intron 35.0%
TTGGGATTTGGATACGCAAA+AGG - tig0003042:89081-89100 Msa1339250:three_prime_UTR 40.0%
TGGGATTTGGATACGCAAAA+GGG - tig0003042:89082-89101 Msa1339250:three_prime_UTR 40.0%
! AGTGGACATGATGATGAATG+TGG + tig0003042:89227-89246 None:intergenic 40.0%
!! GAACGTACTTGTTGTAGTAG+TGG + tig0003042:89245-89264 None:intergenic 40.0%
GCGTGTTTGGATCTAAAAAC+AGG - tig0003042:89542-89561 Msa1339250:three_prime_UTR 40.0%
GAGCTTGTAACTGAAGATAG+CGG - tig0003042:89815-89834 Msa1339250:CDS 40.0%
ACCTATACCAAGGCTCAATT+TGG + tig0003042:90130-90149 None:intergenic 40.0%
TCGCGATTAATTAACCCACT+TGG - tig0003042:90373-90392 Msa1339250:intron 40.0%
CGCGATTAATTAACCCACTT+GGG - tig0003042:90374-90393 Msa1339250:intron 40.0%
! TTAGCATGGTGGTATTGAGT+TGG - tig0003042:90397-90416 Msa1339250:intron 40.0%
!! GTGGTATTGAGTTGGAACTT+GGG - tig0003042:90405-90424 Msa1339250:intron 40.0%
TAGTCCATCCAAATTAGCAC+CGG + tig0003042:90468-90487 None:intergenic 40.0%
AACATCCTTGCTTTCAATCC+GGG - tig0003042:90593-90612 Msa1339250:intron 40.0%
CTTGCAAGTATCAGATCTTG+CGG + tig0003042:90636-90655 None:intergenic 40.0%
ATCTGATACTTGCAAGTCTG+AGG - tig0003042:90640-90659 Msa1339250:intron 40.0%
AATCTCTGTCAGTGTTTCCA+TGG - tig0003042:90682-90701 Msa1339250:intron 40.0%
!! TATGAATGTGGTGGATCTTG+TGG - tig0003042:90801-90820 Msa1339250:intron 40.0%
CAATACTCAAAGGAGTGAAG+AGG + tig0003042:90850-90869 None:intergenic 40.0%
!!! CAGGTTTTAAAACTCCCTTC+AGG + tig0003042:90970-90989 None:intergenic 40.0%
GGCACTCAAATTGATGGAAA+TGG - tig0003042:91036-91055 Msa1339250:intron 40.0%
ACCTTCCATCACAAATACAC+GGG + tig0003042:91353-91372 None:intergenic 40.0%
CACCTTCCATCACAAATACA+CGG + tig0003042:91354-91373 None:intergenic 40.0%
GTATGTTGCCTATATTGAGC+AGG - tig0003042:91899-91918 Msa1339250:intron 40.0%
AAACGCACTTATGCCATGAA+AGG - tig0003042:92002-92021 Msa1339250:intron 40.0%
TTGTATTGTTCTTGCAGGGA+AGG - tig0003042:92459-92478 Msa1339250:intron 40.0%
CACCTTGGATTATGGTTTCA+AGG + tig0003042:92507-92526 None:intergenic 40.0%
TCAAACCCAATTGGAACAGA+CGG + tig0003042:92697-92716 None:intergenic 40.0%
CGATACTTCAACAAGTACTC+AGG + tig0003042:92754-92773 None:intergenic 40.0%
!! GTACTTGTTGAAGTATCGTG+TGG - tig0003042:92756-92775 Msa1339250:intron 40.0%
ATTGAGACTCCTGTATAAGG+AGG - tig0003042:92867-92886 Msa1339250:intron 40.0%
TAAACACTAGAGAGTGAGAG+AGG - tig0003042:92945-92964 Msa1339250:intron 40.0%
GACTATAGTCCTCCTTAAAC+AGG + tig0003042:93048-93067 None:intergenic 40.0%
TTCGTCTGAGGATGTATTGT+AGG - tig0003042:93237-93256 Msa1339250:intron 40.0%
TCGTCTGAGGATGTATTGTA+GGG - tig0003042:93238-93257 Msa1339250:intron 40.0%
CTTGTGTGCTCTATATTCTC+GGG - tig0003042:93286-93305 Msa1339250:intron 40.0%
TAGATAAAACTCAAGGGAGG+TGG + tig0003042:94409-94428 None:intergenic 40.0%
! GTAGGTTTTCAAACTACAGG+GGG + tig0003042:93618-93637 None:intergenic 40.0%
ATTCCATTGAGAGAGAGTCA+AGG - tig0003042:93812-93831 Msa1339250:intron 40.0%
AAAGAGAGAGATAGTCACGA+TGG - tig0003042:93870-93889 Msa1339250:intron 40.0%
!!! GACTCGAATTTTGGCTTTGA+AGG - tig0003042:94009-94028 Msa1339250:intron 40.0%
AACTGCAATTATGGAGTCAC+AGG - tig0003042:94080-94099 Msa1339250:intron 40.0%
! TATTTTCCTTCCTTTGTCCC+TGG + tig0003042:94125-94144 None:intergenic 40.0%
!!! CTCTCTTTTTTTGGTTGGAG+AGG - tig0003042:94241-94260 Msa1339250:intron 40.0%
!!! CTTTTTTTGGTTGGAGAGGT+TGG - tig0003042:94245-94264 Msa1339250:intron 40.0%
GAGAGGTTGGATTTGTATCA+TGG - tig0003042:94258-94277 Msa1339250:intron 40.0%
! GTAGGTTTTCAAACTAGAGG+GGG - tig0003042:94373-94392 Msa1339250:intron 40.0%
GGTCAATCTAGCACAAGTTT+CGG - tig0003042:94764-94783 Msa1339250:intron 40.0%
!! CCCATTACTAGTCTTAGGAT+TGG - tig0003042:94853-94872 Msa1339250:intron 40.0%
GCCAATCCTAAGACTAGTAA+TGG + tig0003042:94857-94876 None:intergenic 40.0%
! AAAACATTTTTCCAGGGGAC+TGG + tig0003042:95154-95173 None:intergenic 40.0%
!! TTTTAGTCTTCTGTTCACCC+AGG - tig0003042:95170-95189 Msa1339250:intron 40.0%
AAAGGTTTGACAATTGGTGG+TGG - tig0003042:95357-95376 Msa1339250:intron 40.0%
! AAGGTTTGACAATTGGTGGT+GGG - tig0003042:95358-95377 Msa1339250:intron 40.0%
TGCTGTCTTGAAGAAACGAA+TGG - tig0003042:95404-95423 Msa1339250:intron 40.0%
AACATCAGTTAAGCAGGAGA+CGG + tig0003042:95495-95514 None:intergenic 40.0%
TCCATGCTTTCTTTCCTCAT+TGG - tig0003042:95529-95548 Msa1339250:CDS 40.0%
! ATTCTGACAGAGTACCTGAA+AGG - tig0003042:95595-95614 Msa1339250:intron 40.0%
CTCTAGATTCAATGCCTTTC+AGG + tig0003042:95612-95631 None:intergenic 40.0%
TGAGATTGTTCAAGTGCTTC+AGG - tig0003042:95636-95655 Msa1339250:intron 40.0%
GAGATTGTTCAAGTGCTTCA+GGG - tig0003042:95637-95656 Msa1339250:intron 40.0%
GCATCATGTAGAAATTGCCA+TGG + tig0003042:95728-95747 None:intergenic 40.0%
TTTGTCCTGATGCCAAAGTT+TGG - tig0003042:95929-95948 Msa1339250:CDS 40.0%
ACATTTGACCCTCCAAACTT+TGG + tig0003042:95944-95963 None:intergenic 40.0%
!! AGAGAGAGTATTAGCGGAAG+CGG + tig0003042:89192-89211 None:intergenic 45.0%
GTGTACGCCAAAGTAAAGGA+TGG + tig0003042:89337-89356 None:intergenic 45.0%
AGCAGTGTACGCCAAAGTAA+AGG + tig0003042:89341-89360 None:intergenic 45.0%
AGCTTCTTCGGCTTCTTGAT+TGG + tig0003042:89587-89606 None:intergenic 45.0%
GCCAAATTGAGCCTTGGTAT+AGG - tig0003042:90126-90145 Msa1339250:intron 45.0%
TGGCACATGTACCTATACCA+AGG + tig0003042:90140-90159 None:intergenic 45.0%
!! TTAACCCACTTGGGTTAGCA+TGG - tig0003042:90383-90402 Msa1339250:intron 45.0%
!! GGTGGTATTGAGTTGGAACT+TGG - tig0003042:90404-90423 Msa1339250:intron 45.0%
! GATTCTCACCGGTGCTAATT+TGG - tig0003042:90457-90476 Msa1339250:intron 45.0%
TGCAACGGTTATGAATGTGG+TGG - tig0003042:90792-90811 Msa1339250:intron 45.0%
TCTGCAACAGATGTCCTGAA+GGG - tig0003042:90953-90972 Msa1339250:intron 45.0%
TTGAGTGCCTGAGGATCTTT+GGG + tig0003042:91025-91044 None:intergenic 45.0%
TTTGAGTGCCTGAGGATCTT+TGG + tig0003042:91026-91045 None:intergenic 45.0%
TCCTCAGGCACTCAAATTGA+TGG - tig0003042:91030-91049 Msa1339250:intron 45.0%
TCCATCAATTTGAGTGCCTG+AGG + tig0003042:91034-91053 None:intergenic 45.0%
AGTTTGCGTTCCAGTGAAAC+AGG + tig0003042:91100-91119 None:intergenic 45.0%
TAAGCCCCGTGTATTTGTGA+TGG - tig0003042:91345-91364 Msa1339250:intron 45.0%
CCTTCCATCACAAATACACG+GGG + tig0003042:91352-91371 None:intergenic 45.0%
GTTGTGCACTAACTTCAGCA+AGG + tig0003042:91586-91605 None:intergenic 45.0%
TGCCTATATTGAGCAGGCAA+AGG - tig0003042:91905-91924 Msa1339250:intron 45.0%
GCCTATATTGAGCAGGCAAA+GGG - tig0003042:91906-91925 Msa1339250:intron 45.0%
TCCCTTTGCCTGCTCAATAT+AGG + tig0003042:91910-91929 None:intergenic 45.0%
GCTTGAGGCTATGTTGCAAA+AGG - tig0003042:91947-91966 Msa1339250:intron 45.0%
!!! AGTGCGTTTTGAGAGAGAGT+TGG + tig0003042:91991-92010 None:intergenic 45.0%
CATGACACTAGTCGTGTACA+GGG - tig0003042:92072-92091 Msa1339250:intron 45.0%
AATTGGGAAATAGGGCGAGT+AGG - tig0003042:92152-92171 Msa1339250:intron 45.0%
GCAATAACACATGTCACAGC+TGG - tig0003042:92205-92224 Msa1339250:intron 45.0%
!! TGCAGGGAAGGAAGTTTTGA+AGG - tig0003042:92471-92490 Msa1339250:intron 45.0%
ATCTCTCCGTCTGTTCCAAT+TGG - tig0003042:92688-92707 Msa1339250:intron 45.0%
TCTCTCCGTCTGTTCCAATT+GGG - tig0003042:92689-92708 Msa1339250:intron 45.0%
ACTAGAGAGTGAGAGAGGTA+TGG - tig0003042:92950-92969 Msa1339250:intron 45.0%
TACACGAAAGAGAGAGGATG+CGG + tig0003042:93017-93036 None:intergenic 45.0%
GAACCACCAGTTCATCGTTA+AGG + tig0003042:93461-93480 None:intergenic 45.0%
TTCTCTTGTTGAGAGGACCA+CGG - tig0003042:93478-93497 Msa1339250:intron 45.0%
! TTTCAAACTACAGGGGGTGT+TGG + tig0003042:93612-93631 None:intergenic 45.0%
TCTCCTTGACTCTCTCTCAA+TGG + tig0003042:93818-93837 None:intergenic 45.0%
AGAGTCAAGGAGATGACGAT+GGG - tig0003042:93825-93844 Msa1339250:intron 45.0%
TGCAATTATGGAGTCACAGG+AGG - tig0003042:94083-94102 Msa1339250:intron 45.0%
GATACAACTGTGCAACACCA+GGG - tig0003042:94105-94124 Msa1339250:intron 45.0%
AACTCAAGGGAGGTTAGTGT+AGG - tig0003042:94355-94374 Msa1339250:CDS 45.0%
!! GCTGTCCCATTACTAGTCTT+AGG - tig0003042:94848-94867 Msa1339250:intron 45.0%
!! GTCATATTGGTTTCCGGAGA+AGG + tig0003042:95060-95079 None:intergenic 45.0%
TCCACAACATTGAGACTCCT+GGG + tig0003042:95190-95209 None:intergenic 45.0%
ATCCACAACATTGAGACTCC+TGG + tig0003042:95191-95210 None:intergenic 45.0%
AGGAGTCTCAATGTTGTGGA+TGG - tig0003042:95190-95209 Msa1339250:intron 45.0%
!! AGGTTTGACAATTGGTGGTG+GGG - tig0003042:95359-95378 Msa1339250:intron 45.0%
AAGACAGCATAAAGCTCCTC+TGG + tig0003042:95393-95412 None:intergenic 45.0%
GCCAATGAGGAAAGAAAGCA+TGG + tig0003042:95533-95552 None:intergenic 45.0%
!!! CCTCCTTTGTTTTTCACCAG+CGG + tig0003042:95555-95574 None:intergenic 45.0%
CGCTGGTGAAAAACAAAGGA+GGG - tig0003042:95553-95572 Msa1339250:CDS 45.0%
TGGTGAAAAACAAAGGAGGG+AGG - tig0003042:95556-95575 Msa1339250:CDS 45.0%
AGGGAGGTTCTTACCAACAA+CGG - tig0003042:95572-95591 Msa1339250:CDS 45.0%
ACTCTGTCAGAATCCGTTGT+TGG + tig0003042:95588-95607 None:intergenic 45.0%
AATTCTACTGTGGTTTCCCC+TGG + tig0003042:95663-95682 None:intergenic 45.0%
AGCTGGAATGTCATAAGCCA+TGG - tig0003042:95708-95727 Msa1339250:intron 45.0%
!!! ACTTCCAGCTAGTTTTGTGC+TGG - tig0003042:95889-95908 Msa1339250:intron 45.0%
ATCTCCAGCACAAAACTAGC+TGG + tig0003042:95896-95915 None:intergenic 45.0%
TCCTGATGCCAAAGTTTGGA+GGG - tig0003042:95933-95952 Msa1339250:CDS 45.0%
! TATGCTGCTGCTGATTGCAA+AGG + tig0003042:96078-96097 None:intergenic 45.0%
! AGGGATAGTTGGTTCAGTGG+CGG + tig0003042:89126-89145 None:intergenic 50.0%
TCATTCTTCAGCTGGAGCGA+GGG + tig0003042:89145-89164 None:intergenic 50.0%
GCTCGTAAGCTAGCTAACAG+TGG - tig0003042:89790-89809 Msa1339250:CDS 50.0%
TGTCTCGCCAAATTGAGCCT+TGG - tig0003042:90120-90139 Msa1339250:intron 50.0%
AGGTACATGTGCCATGCAAG+AGG - tig0003042:90146-90165 Msa1339250:intron 50.0%
ACCACCATGCTAACCCAAGT+GGG + tig0003042:90390-90409 None:intergenic 50.0%
TACCACCATGCTAACCCAAG+TGG + tig0003042:90391-90410 None:intergenic 50.0%
GAATCGAACCTGAGACCTTG+AGG + tig0003042:90442-90461 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCAC+CGG - tig0003042:90446-90465 Msa1339250:intron 50.0%
! CTCACCGGTGCTAATTTGGA+TGG - tig0003042:90461-90480 Msa1339250:intron 50.0%
AGAAGCCCGGATTGAAAGCA+AGG + tig0003042:90601-90620 None:intergenic 50.0%
TTGCTTTCAATCCGGGCTTC+TGG - tig0003042:90600-90619 Msa1339250:intron 50.0%
GGCTGCAACGGTTATGAATG+TGG - tig0003042:90789-90808 Msa1339250:intron 50.0%
GTCTGCAACAGATGTCCTGA+AGG - tig0003042:90952-90971 Msa1339250:intron 50.0%
! CCCCGTGTATTTGTGATGGA+AGG - tig0003042:91349-91368 Msa1339250:intron 50.0%
ATTGAGCAGGCAAAGGGAGA+TGG - tig0003042:91912-91931 Msa1339250:intron 50.0%
AAGGGAGATGGTGATAAGCC+TGG - tig0003042:91924-91943 Msa1339250:intron 50.0%
AGGGAGATGGTGATAAGCCT+GGG - tig0003042:91925-91944 Msa1339250:intron 50.0%
GCATGACACTAGTCGTGTAC+AGG - tig0003042:92071-92090 Msa1339250:intron 50.0%
ATGTCACAGCTGGTGTGACA+GGG - tig0003042:92215-92234 Msa1339250:intron 50.0%
GGCTAGAGACCTCCTTATAC+AGG + tig0003042:92879-92898 None:intergenic 50.0%
CGTCCTCCTTAACGATGAAC+TGG - tig0003042:93452-93471 Msa1339250:intron 50.0%
CCACCAGTTCATCGTTAAGG+AGG + tig0003042:93458-93477 None:intergenic 50.0%
CCTCCTTAACGATGAACTGG+TGG - tig0003042:93455-93474 Msa1339250:intron 50.0%
CTGGTGGTTCTCTTGTTGAG+AGG - tig0003042:93471-93490 Msa1339250:intron 50.0%
TCGACAAATCAATCCTGCCG+TGG + tig0003042:93498-93517 None:intergenic 50.0%
GAGAGTCAAGGAGATGACGA+TGG - tig0003042:93824-93843 Msa1339250:intron 50.0%
GGATACAACTGTGCAACACC+AGG - tig0003042:94104-94123 Msa1339250:intron 50.0%
ACCCAGGAGTCTCAATGTTG+TGG - tig0003042:95186-95205 Msa1339250:intron 50.0%
CTTCTTCAGGAGCTGTGCAA+GGG + tig0003042:95317-95336 None:intergenic 50.0%
TCTTCTTCAGGAGCTGTGCA+AGG + tig0003042:95318-95337 None:intergenic 50.0%
GCACAGCTCCTGAAGAAGAA+TGG - tig0003042:95319-95338 Msa1339250:intron 50.0%
TTTCTTTCCTCATTGGCCGC+TGG - tig0003042:95536-95555 Msa1339250:CDS 50.0%
! TTTTTCACCAGCGGCCAATG+AGG + tig0003042:95546-95565 None:intergenic 50.0%
TGGCCGCTGGTGAAAAACAA+AGG - tig0003042:95549-95568 Msa1339250:CDS 50.0%
CCGCTGGTGAAAAACAAAGG+AGG - tig0003042:95552-95571 Msa1339250:CDS 50.0%
TCTTCATACCTGGAGATGGG+TGG - tig0003042:95683-95702 Msa1339250:intron 50.0%
CTTCATACCTGGAGATGGGT+GGG - tig0003042:95684-95703 Msa1339250:intron 50.0%
GTCCTGATGCCAAAGTTTGG+AGG - tig0003042:95932-95951 Msa1339250:CDS 50.0%
ACCCTCCAAACTTTGGCATC+AGG + tig0003042:95937-95956 None:intergenic 50.0%
! GGGATAGTTGGTTCAGTGGC+GGG + tig0003042:89125-89144 None:intergenic 55.0%
! GCGAGGGATAGTTGGTTCAG+TGG + tig0003042:89129-89148 None:intergenic 55.0%
CTCATTCTTCAGCTGGAGCG+AGG + tig0003042:89146-89165 None:intergenic 55.0%
GGCGTACACTGCTGCAGAAT+CGG - tig0003042:89348-89367 Msa1339250:three_prime_UTR 55.0%
CGAACCACGAACGTAGCTTG+AGG - tig0003042:89387-89406 Msa1339250:three_prime_UTR 55.0%
GCTTCCTCAAGCTACGTTCG+TGG + tig0003042:89394-89413 None:intergenic 55.0%
!! ACCCACTTGGGTTAGCATGG+TGG - tig0003042:90386-90405 Msa1339250:intron 55.0%
TCGAACCTGAGACCTTGAGG+AGG + tig0003042:90439-90458 None:intergenic 55.0%
GCAAGTCGTATCCAGAAGCC+CGG + tig0003042:90614-90633 None:intergenic 55.0%
TTGGCCTCCCAAAGATCCTC+AGG - tig0003042:91015-91034 Msa1339250:intron 55.0%
AGTGCCTGAGGATCTTTGGG+AGG + tig0003042:91022-91041 None:intergenic 55.0%
GCAAGAGTGGCCTGTTTCAC+TGG - tig0003042:91087-91106 Msa1339250:intron 55.0%
AAGGGAACAAGCAGGACAGC+TGG - tig0003042:91550-91569 Msa1339250:intron 55.0%
CAAGCAGGACAGCTGGATGA+AGG - tig0003042:91557-91576 Msa1339250:intron 55.0%
TGGTGATAAGCCTGGGCTTG+AGG - tig0003042:91932-91951 Msa1339250:intron 55.0%
TGCAACATAGCCTCAAGCCC+AGG + tig0003042:91945-91964 None:intergenic 55.0%
CATGTCACAGCTGGTGTGAC+AGG - tig0003042:92214-92233 Msa1339250:intron 55.0%
ACGAAAGAGAGAGGATGCGG+AGG + tig0003042:93014-93033 None:intergenic 55.0%
CTGTGCAACACCAGGGACAA+AGG - tig0003042:94112-94131 Msa1339250:CDS 55.0%
GCAACACCAGGGACAAAGGA+AGG - tig0003042:94116-94135 Msa1339250:CDS 55.0%
ACCTCATGTTTCCAGTCCCC+TGG - tig0003042:95140-95159 Msa1339250:intron 55.0%
TCCAGGGGACTGGAAACATG+AGG + tig0003042:95144-95163 None:intergenic 55.0%
TGGTGGGGATGTTTCACCAG+AGG - tig0003042:95374-95393 Msa1339250:intron 55.0%
TGTTCAAGTGCTTCAGGGCC+AGG - tig0003042:95642-95661 Msa1339250:intron 55.0%
GTTCAAGTGCTTCAGGGCCA+GGG - tig0003042:95643-95662 Msa1339250:intron 55.0%
TTCAAGTGCTTCAGGGCCAG+GGG - tig0003042:95644-95663 Msa1339250:intron 55.0%
! TTGGTTCAGTGGCGGGAGAG+AGG + tig0003042:89118-89137 None:intergenic 60.0%
CAGCTGGAGCGAGGGATAGT+TGG + tig0003042:89137-89156 None:intergenic 60.0%
! TGGGAGTGTGCTCCTCCTCA+AGG - tig0003042:90424-90443 Msa1339250:intron 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG - tig0003042:90431-90450 Msa1339250:intron 60.0%
CTTGTTGAGAGGACCACGGC+AGG - tig0003042:93482-93501 Msa1339250:intron 60.0%
CCAGCTGCCCACCCATCTCC+AGG + tig0003042:95694-95713 None:intergenic 70.0%
CCTGGAGATGGGTGGGCAGC+TGG - tig0003042:95691-95710 Msa1339250:intron 70.0%
Chromosome Type Strat End Strand Name
tig0003042 gene 89039 96124 89039 ID=Msa1339250;Name=Msa1339250
tig0003042 mRNA 89039 96124 89039 ID=Msa1339250-mRNA-1;Parent=Msa1339250;Name=Msa1339250-mRNA-1;_AED=0.17;_eAED=0.17;_QI=122|1|1|1|1|1|10|618|323
tig0003042 exon 89039 89838 89039 ID=Msa1339250-mRNA-1:exon:2050;Parent=Msa1339250-mRNA-1
tig0003042 exon 92640 92687 92640 ID=Msa1339250-mRNA-1:exon:2049;Parent=Msa1339250-mRNA-1
tig0003042 exon 93140 93242 93140 ID=Msa1339250-mRNA-1:exon:2048;Parent=Msa1339250-mRNA-1
tig0003042 exon 93550 93624 93550 ID=Msa1339250-mRNA-1:exon:2047;Parent=Msa1339250-mRNA-1
tig0003042 exon 94106 94222 94106 ID=Msa1339250-mRNA-1:exon:2046;Parent=Msa1339250-mRNA-1
tig0003042 exon 94326 94391 94326 ID=Msa1339250-mRNA-1:exon:2045;Parent=Msa1339250-mRNA-1
tig0003042 exon 94493 94591 94493 ID=Msa1339250-mRNA-1:exon:2044;Parent=Msa1339250-mRNA-1
tig0003042 exon 95494 95599 95494 ID=Msa1339250-mRNA-1:exon:2043;Parent=Msa1339250-mRNA-1
tig0003042 exon 95719 95798 95719 ID=Msa1339250-mRNA-1:exon:2042;Parent=Msa1339250-mRNA-1
tig0003042 exon 95907 96124 95907 ID=Msa1339250-mRNA-1:exon:2041;Parent=Msa1339250-mRNA-1
tig0003042 five_prime_UTR 96003 96124 96003 ID=Msa1339250-mRNA-1:five_prime_utr;Parent=Msa1339250-mRNA-1
tig0003042 CDS 95907 96002 95907 ID=Msa1339250-mRNA-1:cds;Parent=Msa1339250-mRNA-1
tig0003042 CDS 95719 95798 95719 ID=Msa1339250-mRNA-1:cds;Parent=Msa1339250-mRNA-1
tig0003042 CDS 95494 95599 95494 ID=Msa1339250-mRNA-1:cds;Parent=Msa1339250-mRNA-1
tig0003042 CDS 94493 94591 94493 ID=Msa1339250-mRNA-1:cds;Parent=Msa1339250-mRNA-1
tig0003042 CDS 94326 94391 94326 ID=Msa1339250-mRNA-1:cds;Parent=Msa1339250-mRNA-1
tig0003042 CDS 94106 94222 94106 ID=Msa1339250-mRNA-1:cds;Parent=Msa1339250-mRNA-1
tig0003042 CDS 93550 93624 93550 ID=Msa1339250-mRNA-1:cds;Parent=Msa1339250-mRNA-1
tig0003042 CDS 93140 93242 93140 ID=Msa1339250-mRNA-1:cds;Parent=Msa1339250-mRNA-1
tig0003042 CDS 92640 92687 92640 ID=Msa1339250-mRNA-1:cds;Parent=Msa1339250-mRNA-1
tig0003042 CDS 89657 89838 89657 ID=Msa1339250-mRNA-1:cds;Parent=Msa1339250-mRNA-1
tig0003042 three_prime_UTR 89039 89656 89039 ID=Msa1339250-mRNA-1:three_prime_utr;Parent=Msa1339250-mRNA-1
Gene Sequence

>Msa1339250

ATGAGAATAATGAACGCGTTCTCTATCTCCGCTTCCGCTAATACTCTCTCTTCTTTTCCTAATCCACATTCATCATCATGTCCACTACTACAACAAAATCGGAAAATTCAGAATCTCTCGAACCACGAACGTAGCTTGAGGAAGCTTACACTGTTTACTTCAAATTCGAGAAAGAGGAAAACTTTGATATGTGCAGCCAATCAAGAAGCCGAAGAAGCTTTTAAGAAGACTGTTGCAATTGATCATCTCATTGATATGCTTCGGGAAGCTAATCCTCGTGAACTTGAGAAACTCGTTGTTGAAAACATCCTTGCTTTCAATCCGGGCTTCTGGATACGACTTGCCGCAAGATCTGATACTTGCAAGTCTGAGGATGATAAAAAAGATTATGAAGAATTGGCTGCAACGGTTATGAATGTGGTGGATCTTGTGGTTAACAAGACTAAGGAAAAGATAGAGTCTGCAACAGATGTCCTGAAGGGAGTTTTAAAACCTGTGATTAATGATGAAGGAGAGATTTCTTGGCCTCCCAAAGATCCTCAGGCACTCAAATTGATGGAAATGGAAATAAATCAAAGGGAACAAGCAGGACAGCTGGATGAAGGTTTCCTTGCTGAAGTTAGTGCACAACTAAGACAAGCAAAGGGAGATGGTGATAAGCCTGGGCTTGAGGCTATGTTGCAAAAGGTCTTGCAGCTTTATGCTTCCAACTCTCTCTCAAAACGCACTTATGCCATGAAAGGGAAGGAAGTTTTGAAGGATGAGCAATTCCTTGAAACCATAATCCAAGCTCCTGAAGAAGAATGGAACAATATTTTGATCAAAGGTTTGACAATTGGTGGTGGGGATGTTTCACCAGAGGAGCTTTATGCTGTCTTGAAGAAACGAATGGAGCGTACTTTAATTAGAACTGTGAGACAATGCTATACCTTTCTACATTTGGTTCATCTCTTTTTTCCGTCTCCTGCTTAA

Protein sequence

>Msa1339250

MRIMNAFSISASANTLSSFPNPHSSSCPLLQQNRKIQNLSNHERSLRKLTLFTSNSRKRKTLICAANQEAEEAFKKTVAIDHLIDMLREANPRELEKLVVENILAFNPGFWIRLAARSDTCKSEDDKKDYEELAATVMNVVDLVVNKTKEKIESATDVLKGVLKPVINDEGEISWPPKDPQALKLMEMEINQREQAGQLDEGFLAEVSAQLRQAKGDGDKPGLEAMLQKVLQLYASNSLSKRTYAMKGKEVLKDEQFLETIIQAPEEEWNNILIKGLTIGGGDVSPEELYAVLKKRMERTLIRTVRQCYTFLHLVHLFFPSPA*