Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1215800 | XP_003609498.2 | 96.000 | 150 | 6 | 0 | 1 | 150 | 1 | 150 | 3.37e-91 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002760 | Msa1215800 | 0.998305 | 2.295324e-261 | -8.615850e-47 |
| Msa0009210 | Msa1215800 | 0.801192 | 1.011223e-48 | -8.615850e-47 |
| Msa0037300 | Msa1215800 | 0.806354 | 8.570037e-50 | -8.615850e-47 |
| Msa0046090 | Msa1215800 | 0.829494 | 4.989593e-55 | -8.615850e-47 |
| Msa0058970 | Msa1215800 | 0.805209 | 1.491013e-49 | -8.615850e-47 |
| Msa0081300 | Msa1215800 | 0.809513 | 1.823427e-50 | -8.615850e-47 |
| Msa0093830 | Msa1215800 | 0.816563 | 5.185294e-52 | -8.615850e-47 |
| Msa0605670 | Msa1215800 | 0.814577 | 1.435589e-51 | -8.615850e-47 |
| Msa0623350 | Msa1215800 | 0.807091 | 5.987584e-50 | -8.615850e-47 |
| Msa0624260 | Msa1215800 | 0.800429 | 1.447156e-48 | -8.615850e-47 |
| Msa0646710 | Msa1215800 | 0.830416 | 2.973145e-55 | -8.615850e-47 |
| Msa0649140 | Msa1215800 | 0.822473 | 2.324625e-53 | -8.615850e-47 |
| Msa0704570 | Msa1215800 | 0.801076 | 1.068038e-48 | -8.615850e-47 |
| Msa0708120 | Msa1215800 | 0.804761 | 1.849854e-49 | -8.615850e-47 |
| Msa0726000 | Msa1215800 | 0.810435 | 1.154092e-50 | -8.615850e-47 |
| Msa0774090 | Msa1215800 | 0.808156 | 3.556648e-50 | -8.615850e-47 |
| Msa0775970 | Msa1215800 | 0.812855 | 3.435920e-51 | -8.615850e-47 |
| Msa0823760 | Msa1215800 | 0.812056 | 5.135582e-51 | -8.615850e-47 |
| Msa0831710 | Msa1215800 | 0.800664 | 1.296276e-48 | -8.615850e-47 |
| Msa0124070 | Msa1215800 | 0.808957 | 2.399257e-50 | -8.615850e-47 |
| Msa0147070 | Msa1215800 | 0.817210 | 3.711936e-52 | -8.615850e-47 |
| Msa0156260 | Msa1215800 | 0.801753 | 7.759848e-49 | -8.615850e-47 |
| Msa0168470 | Msa1215800 | 0.802497 | 5.455632e-49 | -8.615850e-47 |
| Msa0178020 | Msa1215800 | 0.805987 | 1.023823e-49 | -8.615850e-47 |
| Msa0185770 | Msa1215800 | 0.809203 | 2.124665e-50 | -8.615850e-47 |
| Msa0186750 | Msa1215800 | 0.811955 | 5.404856e-51 | -8.615850e-47 |
| Msa0371050 | Msa1215800 | 0.806756 | 7.048905e-50 | -8.615850e-47 |
| Msa0378570 | Msa1215800 | 0.807275 | 5.472043e-50 | -8.615850e-47 |
| Msa0463980 | Msa1215800 | 0.809536 | 1.802943e-50 | -8.615850e-47 |
| Msa0466070 | Msa1215800 | 0.806004 | 1.015274e-49 | -8.615850e-47 |
| Msa0475080 | Msa1215800 | 0.804440 | 2.158522e-49 | -8.615850e-47 |
| Msa0985570 | Msa1215800 | 0.827360 | 1.632943e-54 | -8.615850e-47 |
| Msa1055490 | Msa1215800 | 0.800228 | 1.590453e-48 | -8.615850e-47 |
| Msa1066930 | Msa1215800 | 0.807290 | 5.432511e-50 | -8.615850e-47 |
| Msa1070710 | Msa1215800 | 0.802955 | 4.388167e-49 | -8.615850e-47 |
| Msa1095880 | Msa1215800 | 0.806451 | 8.173706e-50 | -8.615850e-47 |
| Msa0266100 | Msa1215800 | 0.840190 | 1.009703e-57 | -8.615850e-47 |
| Msa0274870 | Msa1215800 | 0.804403 | 2.196559e-49 | -8.615850e-47 |
| Msa0280120 | Msa1215800 | 0.804803 | 1.812392e-49 | -8.615850e-47 |
| Msa0288350 | Msa1215800 | 0.802405 | 5.699318e-49 | -8.615850e-47 |
| Msa0335860 | Msa1215800 | 0.821885 | 3.183272e-53 | -8.615850e-47 |
| Msa0341710 | Msa1215800 | 0.806271 | 8.921167e-50 | -8.615850e-47 |
| Msa1127530 | Msa1215800 | 0.812157 | 4.882440e-51 | -8.615850e-47 |
| Msa1175740 | Msa1215800 | 0.807920 | 3.993111e-50 | -8.615850e-47 |
| Msa1189630 | Msa1215800 | 0.830122 | 3.508017e-55 | -8.615850e-47 |
| Msa1190300 | Msa1215800 | 0.804335 | 2.269666e-49 | -8.615850e-47 |
| Msa1190670 | Msa1215800 | 0.815834 | 7.544698e-52 | -8.615850e-47 |
| Msa1196910 | Msa1215800 | 0.806606 | 7.580519e-50 | -8.615850e-47 |
| Msa1196990 | Msa1215800 | 0.802034 | 6.794863e-49 | -8.615850e-47 |
| Msa1206500 | Msa1215800 | 0.805669 | 1.193882e-49 | -8.615850e-47 |
| Msa1208630 | Msa1215800 | 0.807406 | 5.134475e-50 | -8.615850e-47 |
| Msa1214080 | Msa1215800 | 0.804204 | 2.417161e-49 | -8.615850e-47 |
| Msa1215800 | Msa1222900 | 0.808918 | 2.445046e-50 | -8.615850e-47 |
| Msa1215800 | Msa1223050 | 0.800239 | 1.582094e-48 | -8.615850e-47 |
| Msa1215800 | Msa1223520 | 0.804343 | 2.261389e-49 | -8.615850e-47 |
| Msa1215800 | Msa1235880 | 0.814578 | 1.434336e-51 | -8.615850e-47 |
| Msa1215800 | Msa1236090 | 0.821357 | 4.216083e-53 | -8.615850e-47 |
| Msa1215800 | Msa1249740 | 0.806203 | 9.219372e-50 | -8.615850e-47 |
| Msa1215800 | Msa1263600 | 0.815703 | 8.072173e-52 | -8.615850e-47 |
| Msa1215800 | Msa1264670 | 0.814624 | 1.401682e-51 | -8.615850e-47 |
| Msa1215800 | Msa1300880 | 0.804074 | 2.571483e-49 | -8.615850e-47 |
| Msa1215800 | Msa1301620 | 0.850830 | 1.317600e-60 | -8.615850e-47 |
| Msa1215800 | Msa1315990 | 0.811285 | 7.557616e-51 | -8.615850e-47 |
| Msa1215800 | Msa1324940 | 0.813423 | 2.578896e-51 | -8.615850e-47 |
| Msa1215800 | Msa1331900 | 0.803688 | 3.093238e-49 | -8.615850e-47 |
| Msa1215800 | Msa1337950 | 0.806678 | 7.319430e-50 | -8.615850e-47 |
| Msa1215800 | Msa1349720 | 0.825213 | 5.299414e-54 | -8.615850e-47 |
| Msa1215800 | Msa1364650 | 0.805954 | 1.040157e-49 | -8.615850e-47 |
| Msa1215800 | Msa1373340 | 0.806477 | 8.070178e-50 | -8.615850e-47 |
| Msa1215800 | Msa1375120 | 0.810667 | 1.028348e-50 | -8.615850e-47 |
| Msa1215800 | Msa1411390 | 0.805969 | 1.032673e-49 | -8.615850e-47 |
| Msa1215800 | Msa1412750 | 0.816218 | 6.193870e-52 | -8.615850e-47 |
| Msa1215800 | Msa1420130 | 0.800624 | 1.320454e-48 | -8.615850e-47 |
| Msa1215800 | Msa1426520 | 0.965024 | 4.523479e-124 | -8.615850e-47 |
| Msa1215800 | Msa1439800 | 0.801365 | 9.317417e-49 | -8.615850e-47 |
| Msa1215800 | Msa1439880 | 0.806710 | 7.206426e-50 | -8.615850e-47 |
| Msa1215800 | Msa1444750 | 0.835370 | 1.745551e-56 | -8.615850e-47 |
| Msa1215800 | Msa1449320 | 0.808058 | 3.731752e-50 | -8.615850e-47 |
| Msa1215800 | Msa1455000 | 0.815898 | 7.300359e-52 | -8.615850e-47 |
| Msa0485350 | Msa1215800 | 0.804053 | 2.597912e-49 | -8.615850e-47 |
| Msa0521840 | Msa1215800 | 0.804467 | 2.130345e-49 | -8.615850e-47 |
| Msa0550280 | Msa1215800 | 0.842924 | 1.921326e-58 | -8.615850e-47 |
| Msa0574450 | Msa1215800 | 0.826623 | 2.450225e-54 | -8.615850e-47 |
| Msa0577910 | Msa1215800 | 0.806309 | 8.758310e-50 | -8.615850e-47 |
| Msa0910650 | Msa1215800 | 0.808742 | 2.667658e-50 | -8.615850e-47 |
| Msa0926090 | Msa1215800 | 0.802857 | 4.596833e-49 | -8.615850e-47 |
| Msa0959970 | Msa1215800 | 0.825327 | 4.980986e-54 | -8.615850e-47 |
| Msa0967940 | Msa1215800 | 0.815253 | 1.016400e-51 | -8.615850e-47 |
| Msa0970120 | Msa1215800 | 0.837365 | 5.425737e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1215800 | MtrunA17_Chr4g0065091 | 96.000 | 150 | 6 | 0 | 1 | 150 | 1 | 150 | 3.10e-95 | 271 |
| Msa1215800 | MtrunA17_Chr2g0304701 | 46.809 | 141 | 63 | 5 | 18 | 150 | 17 | 153 | 7.94e-30 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACAAAAGTTCCTTATATT+TGG | 0.128182 | 8_1:+77215508 | Msa1215800:three_prime_UTR |
| AGCTTAATTGAGTATAAAAT+TGG | 0.220335 | 8_1:-77214151 | None:intergenic |
| ATTATATTTATCCAAATATA+AGG | 0.261298 | 8_1:-77215519 | None:intergenic |
| GTGGCTCACACCTCAGTAAA+TGG | 0.325930 | 8_1:+77215312 | Msa1215800:CDS |
| TAGACTCAATTAATTGTGTA+TGG | 0.388334 | 8_1:-77215469 | None:intergenic |
| CTGCAGGAAATATAAAGAAT+AGG | 0.441652 | 8_1:+77215122 | Msa1215800:intron |
| CTAGAAATGTGAATGTGAAT+GGG | 0.472633 | 8_1:+77215340 | Msa1215800:CDS |
| GTGTGTGCAGGGATACGTTT+GGG | 0.472885 | 8_1:+77214402 | Msa1215800:intron |
| GTTATGTCTACAAGGTCCTC+AGG | 0.481183 | 8_1:-77215411 | None:intergenic |
| ACTAGAAATGTGAATGTGAA+TGG | 0.484726 | 8_1:+77215339 | Msa1215800:CDS |
| GCAGGGATACGTTTGGGAAA+AGG | 0.491954 | 8_1:+77214408 | Msa1215800:intron |
| TGTGTGTGCAGGGATACGTT+TGG | 0.497727 | 8_1:+77214401 | Msa1215800:intron |
| TACAACTAAATCCTTGTCAA+AGG | 0.499214 | 8_1:+77215168 | Msa1215800:CDS |
| CCATCTCAGTTATGTCTACA+AGG | 0.517334 | 8_1:-77215419 | None:intergenic |
| CAATTAAGCTCTTCCTTGCA+AGG | 0.550203 | 8_1:+77214164 | Msa1215800:five_prime_UTR |
| CCTTGTAGACATAACTGAGA+TGG | 0.558484 | 8_1:+77215419 | Msa1215800:CDS |
| TTTAGTTGTAGAAATTGAAG+TGG | 0.566395 | 8_1:-77215155 | None:intergenic |
| TGTGAAGAACACTGAGGATG+TGG | 0.567568 | 8_1:+77215293 | Msa1215800:CDS |
| ATACACAATTAATTGAGTCT+AGG | 0.573043 | 8_1:+77215471 | Msa1215800:exon |
| AGAGAGACTGCTACACAAGA+AGG | 0.574354 | 8_1:-77214270 | None:intergenic |
| AGACTCAATTAATTGTGTAT+GGG | 0.578163 | 8_1:-77215468 | None:intergenic |
| AAGAAGTAACACTGATTCTG+AGG | 0.585024 | 8_1:+77214595 | Msa1215800:CDS |
| AGATGGATTATTCACCAGCT+AGG | 0.588549 | 8_1:+77215436 | Msa1215800:CDS |
| TCTAGTATTGCCATTTACTG+AGG | 0.596383 | 8_1:-77215322 | None:intergenic |
| TTATAAACCAACCTTTGACA+AGG | 0.606206 | 8_1:-77215179 | None:intergenic |
| TTATGTCTACAAGGTCCTCA+GGG | 0.619907 | 8_1:-77215410 | None:intergenic |
| TAGAAATGTGAATGTGAATG+GGG | 0.652177 | 8_1:+77215341 | Msa1215800:CDS |
| GAATGTGAATGGGGAAGCAA+AGG | 0.660105 | 8_1:+77215350 | Msa1215800:CDS |
| TACTTCTAATTATCTCCCTG+AGG | 0.676211 | 8_1:+77215395 | Msa1215800:CDS |
| ACAGAATGTGAAGAACACTG+AGG | 0.882326 | 8_1:+77215287 | Msa1215800:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTATATTATAAACCT+TGG | + | chr8_1:77215210-77215229 | Msa1215800:intron | 10.0% |
| !! | AATAAAGATGTAAAAAAAAA+GGG | - | chr8_1:77215241-77215260 | None:intergenic | 10.0% |
| !! | AAATAAAGATGTAAAAAAAA+AGG | - | chr8_1:77215242-77215261 | None:intergenic | 10.0% |
| !! | ATTATATTTATCCAAATATA+AGG | - | chr8_1:77215522-77215541 | None:intergenic | 10.0% |
| !! | ATAAATTATATTATAAACCT+TGG | + | chr8_1:77215210-77215229 | Msa1215800:intron | 10.0% |
| !! | AATAAAGATGTAAAAAAAAA+GGG | - | chr8_1:77215241-77215260 | None:intergenic | 10.0% |
| !! | AAATAAAGATGTAAAAAAAA+AGG | - | chr8_1:77215242-77215261 | None:intergenic | 10.0% |
| !! | ATTATATTTATCCAAATATA+AGG | - | chr8_1:77215522-77215541 | None:intergenic | 10.0% |
| !! | TAATTAAATTTCTTTCATGA+TGG | - | chr8_1:77215030-77215049 | None:intergenic | 15.0% |
| !! | ATCATGAAAGAAATTTAATT+AGG | + | chr8_1:77215029-77215048 | Msa1215800:intron | 15.0% |
| !! | TAATTAAATTTCTTTCATGA+TGG | - | chr8_1:77215030-77215049 | None:intergenic | 15.0% |
| !! | ATCATGAAAGAAATTTAATT+AGG | + | chr8_1:77215029-77215048 | Msa1215800:intron | 15.0% |
| !!! | AAATTGGAAATTTTTAAGAG+TGG | - | chr8_1:77214138-77214157 | None:intergenic | 20.0% |
| !! | AGCTTAATTGAGTATAAAAT+TGG | - | chr8_1:77214154-77214173 | None:intergenic | 20.0% |
| !!! | AGAAAATCACACATTTTATT+TGG | + | chr8_1:77214199-77214218 | Msa1215800:five_prime_UTR | 20.0% |
| !!! | TTTTAAAAAAATTAGGGTAG+TGG | + | chr8_1:77214800-77214819 | Msa1215800:intron | 20.0% |
| !! | TGGAAAATTATTATCTAAAG+TGG | + | chr8_1:77214820-77214839 | Msa1215800:intron | 20.0% |
| !! | TCAAATCTACAATTGTAAAA+TGG | - | chr8_1:77214855-77214874 | None:intergenic | 20.0% |
| !!! | AAATTGGAAATTTTTAAGAG+TGG | - | chr8_1:77214138-77214157 | None:intergenic | 20.0% |
| !! | AGCTTAATTGAGTATAAAAT+TGG | - | chr8_1:77214154-77214173 | None:intergenic | 20.0% |
| !!! | AGAAAATCACACATTTTATT+TGG | + | chr8_1:77214199-77214218 | Msa1215800:five_prime_UTR | 20.0% |
| !!! | TTTTAAAAAAATTAGGGTAG+TGG | + | chr8_1:77214800-77214819 | Msa1215800:intron | 20.0% |
| !! | TGGAAAATTATTATCTAAAG+TGG | + | chr8_1:77214820-77214839 | Msa1215800:intron | 20.0% |
| !! | TCAAATCTACAATTGTAAAA+TGG | - | chr8_1:77214855-77214874 | None:intergenic | 20.0% |
| !! | AAAATGTGTGATTTTCTTCA+GGG | - | chr8_1:77214196-77214215 | None:intergenic | 25.0% |
| !! | TAAAATGTGTGATTTTCTTC+AGG | - | chr8_1:77214197-77214216 | None:intergenic | 25.0% |
| !! | ATTTACCTTGAGTTTTTGTA+AGG | - | chr8_1:77214314-77214333 | None:intergenic | 25.0% |
| ! | AAAAAAGGAAGAAAAACTTG+TGG | - | chr8_1:77214778-77214797 | None:intergenic | 25.0% |
| ! | ATATGTCCTTGTAATTTCAA+AGG | - | chr8_1:77214885-77214904 | None:intergenic | 25.0% |
| !! | TTGCATAGTCATAAGTTTTT+GGG | - | chr8_1:77214935-77214954 | None:intergenic | 25.0% |
| !! | TTTGCATAGTCATAAGTTTT+TGG | - | chr8_1:77214936-77214955 | None:intergenic | 25.0% |
| !!! | AAATGTTTTTATTTTGCTGC+AGG | + | chr8_1:77215106-77215125 | Msa1215800:intron | 25.0% |
| ! | TTTAGTTGTAGAAATTGAAG+TGG | - | chr8_1:77215158-77215177 | None:intergenic | 25.0% |
| ! | AAAAAAAAAGGGAAATTCCA+AGG | - | chr8_1:77215230-77215249 | None:intergenic | 25.0% |
| ! | AGACTCAATTAATTGTGTAT+GGG | - | chr8_1:77215471-77215490 | None:intergenic | 25.0% |
| ! | TAGACTCAATTAATTGTGTA+TGG | - | chr8_1:77215472-77215491 | None:intergenic | 25.0% |
| ! | ATACACAATTAATTGAGTCT+AGG | + | chr8_1:77215471-77215490 | Msa1215800:exon | 25.0% |
| ! | AGACAAAAGTTCCTTATATT+TGG | + | chr8_1:77215508-77215527 | Msa1215800:three_prime_UTR | 25.0% |
| !!! | AGAAATGCTGCAATTTTTTA+AGG | + | chr8_1:77215575-77215594 | Msa1215800:three_prime_UTR | 25.0% |
| !! | AAAATGTGTGATTTTCTTCA+GGG | - | chr8_1:77214196-77214215 | None:intergenic | 25.0% |
| !! | TAAAATGTGTGATTTTCTTC+AGG | - | chr8_1:77214197-77214216 | None:intergenic | 25.0% |
| !! | ATTTACCTTGAGTTTTTGTA+AGG | - | chr8_1:77214314-77214333 | None:intergenic | 25.0% |
| ! | AAAAAAGGAAGAAAAACTTG+TGG | - | chr8_1:77214778-77214797 | None:intergenic | 25.0% |
| ! | ATATGTCCTTGTAATTTCAA+AGG | - | chr8_1:77214885-77214904 | None:intergenic | 25.0% |
| !! | TTGCATAGTCATAAGTTTTT+GGG | - | chr8_1:77214935-77214954 | None:intergenic | 25.0% |
| !! | TTTGCATAGTCATAAGTTTT+TGG | - | chr8_1:77214936-77214955 | None:intergenic | 25.0% |
| !!! | AAATGTTTTTATTTTGCTGC+AGG | + | chr8_1:77215106-77215125 | Msa1215800:intron | 25.0% |
| ! | TTTAGTTGTAGAAATTGAAG+TGG | - | chr8_1:77215158-77215177 | None:intergenic | 25.0% |
| ! | AAAAAAAAAGGGAAATTCCA+AGG | - | chr8_1:77215230-77215249 | None:intergenic | 25.0% |
| ! | AGACTCAATTAATTGTGTAT+GGG | - | chr8_1:77215471-77215490 | None:intergenic | 25.0% |
| ! | TAGACTCAATTAATTGTGTA+TGG | - | chr8_1:77215472-77215491 | None:intergenic | 25.0% |
| ! | ATACACAATTAATTGAGTCT+AGG | + | chr8_1:77215471-77215490 | Msa1215800:exon | 25.0% |
| ! | AGACAAAAGTTCCTTATATT+TGG | + | chr8_1:77215508-77215527 | Msa1215800:three_prime_UTR | 25.0% |
| !!! | AGAAATGCTGCAATTTTTTA+AGG | + | chr8_1:77215575-77215594 | Msa1215800:three_prime_UTR | 25.0% |
| !! | CATTTTTGAAGGAAAATCTG+TGG | - | chr8_1:77214247-77214266 | None:intergenic | 30.0% |
| ! | CAGATTTTCCTTCAAAAATG+AGG | + | chr8_1:77214247-77214266 | Msa1215800:exon | 30.0% |
| GGAAGATTAGAAATGTAACA+AGG | - | chr8_1:77214376-77214395 | None:intergenic | 30.0% | |
| ! | TGCATGCTTTCACATTTTTA+TGG | + | chr8_1:77214512-77214531 | Msa1215800:intron | 30.0% |
| !!! | AGTGTTACTTCTTTTCAACA+AGG | - | chr8_1:77214588-77214607 | None:intergenic | 30.0% |
| TAGTAATCTTCATGAATCTG+TGG | - | chr8_1:77214710-77214729 | None:intergenic | 30.0% | |
| CAGATTCATGAAGATTACTA+TGG | + | chr8_1:77214710-77214729 | Msa1215800:intron | 30.0% | |
| TGTGGACTTGAAAAAACTAA+TGG | - | chr8_1:77214760-77214779 | None:intergenic | 30.0% | |
| TATGACTATGCAAAAATGCA+AGG | + | chr8_1:77214942-77214961 | Msa1215800:intron | 30.0% | |
| CTGCAGGAAATATAAAGAAT+AGG | + | chr8_1:77215122-77215141 | Msa1215800:intron | 30.0% | |
| TACAACTAAATCCTTGTCAA+AGG | + | chr8_1:77215168-77215187 | Msa1215800:CDS | 30.0% | |
| TTATAAACCAACCTTTGACA+AGG | - | chr8_1:77215182-77215201 | None:intergenic | 30.0% | |
| ACTAGAAATGTGAATGTGAA+TGG | + | chr8_1:77215339-77215358 | Msa1215800:CDS | 30.0% | |
| CTAGAAATGTGAATGTGAAT+GGG | + | chr8_1:77215340-77215359 | Msa1215800:CDS | 30.0% | |
| TAGAAATGTGAATGTGAATG+GGG | + | chr8_1:77215341-77215360 | Msa1215800:CDS | 30.0% | |
| !!! | CTGCAATTTTTTAAGGCTTA+GGG | + | chr8_1:77215582-77215601 | Msa1215800:three_prime_UTR | 30.0% |
| !! | CATTTTTGAAGGAAAATCTG+TGG | - | chr8_1:77214247-77214266 | None:intergenic | 30.0% |
| ! | CAGATTTTCCTTCAAAAATG+AGG | + | chr8_1:77214247-77214266 | Msa1215800:exon | 30.0% |
| GGAAGATTAGAAATGTAACA+AGG | - | chr8_1:77214376-77214395 | None:intergenic | 30.0% | |
| ! | TGCATGCTTTCACATTTTTA+TGG | + | chr8_1:77214512-77214531 | Msa1215800:intron | 30.0% |
| !!! | AGTGTTACTTCTTTTCAACA+AGG | - | chr8_1:77214588-77214607 | None:intergenic | 30.0% |
| TAGTAATCTTCATGAATCTG+TGG | - | chr8_1:77214710-77214729 | None:intergenic | 30.0% | |
| CAGATTCATGAAGATTACTA+TGG | + | chr8_1:77214710-77214729 | Msa1215800:intron | 30.0% | |
| TGTGGACTTGAAAAAACTAA+TGG | - | chr8_1:77214760-77214779 | None:intergenic | 30.0% | |
| TATGACTATGCAAAAATGCA+AGG | + | chr8_1:77214942-77214961 | Msa1215800:intron | 30.0% | |
| CTGCAGGAAATATAAAGAAT+AGG | + | chr8_1:77215122-77215141 | Msa1215800:intron | 30.0% | |
| TACAACTAAATCCTTGTCAA+AGG | + | chr8_1:77215168-77215187 | Msa1215800:CDS | 30.0% | |
| TTATAAACCAACCTTTGACA+AGG | - | chr8_1:77215182-77215201 | None:intergenic | 30.0% | |
| ACTAGAAATGTGAATGTGAA+TGG | + | chr8_1:77215339-77215358 | Msa1215800:CDS | 30.0% | |
| CTAGAAATGTGAATGTGAAT+GGG | + | chr8_1:77215340-77215359 | Msa1215800:CDS | 30.0% | |
| TAGAAATGTGAATGTGAATG+GGG | + | chr8_1:77215341-77215360 | Msa1215800:CDS | 30.0% | |
| !!! | CTGCAATTTTTTAAGGCTTA+GGG | + | chr8_1:77215582-77215601 | Msa1215800:three_prime_UTR | 30.0% |
| CTTCTCCTTACAAAAACTCA+AGG | + | chr8_1:77214306-77214325 | Msa1215800:CDS | 35.0% | |
| GAGCAACAAAAACAACATGT+AGG | + | chr8_1:77214444-77214463 | Msa1215800:intron | 35.0% | |
| !! | AAGAAGTAACACTGATTCTG+AGG | + | chr8_1:77214595-77214614 | Msa1215800:CDS | 35.0% |
| AATGACCAACAAAAATGCAC+AGG | + | chr8_1:77214632-77214651 | Msa1215800:CDS | 35.0% | |
| !! | CTTTAGAAGCTGTTTTCTTC+AGG | - | chr8_1:77214661-77214680 | None:intergenic | 35.0% |
| ! | TAACTGGTTGTGTGATTTTC+TGG | - | chr8_1:77214687-77214706 | None:intergenic | 35.0% |
| ! | ATTATCTAAAGTGGCGCTAA+TGG | + | chr8_1:77214829-77214848 | Msa1215800:intron | 35.0% |
| !! | CTTCGTCCTTTGAAATTACA+AGG | + | chr8_1:77214876-77214895 | Msa1215800:intron | 35.0% |
| GACAAAATTTGTCAGCTTAG+TGG | - | chr8_1:77214913-77214932 | None:intergenic | 35.0% | |
| !! | AAGGCTTTATTCTCTTCTCT+TGG | + | chr8_1:77214961-77214980 | Msa1215800:intron | 35.0% |
| TATTCTCTTCTCTTGGTTTC+TGG | + | chr8_1:77214968-77214987 | Msa1215800:intron | 35.0% | |
| ACTAAATCCTTGTCAAAGGT+TGG | + | chr8_1:77215172-77215191 | Msa1215800:intron | 35.0% | |
| ! | TCTAGTATTGCCATTTACTG+AGG | - | chr8_1:77215325-77215344 | None:intergenic | 35.0% |
| TACTTCTAATTATCTCCCTG+AGG | + | chr8_1:77215395-77215414 | Msa1215800:CDS | 35.0% | |
| !!! | GCTGCAATTTTTTAAGGCTT+AGG | + | chr8_1:77215581-77215600 | Msa1215800:three_prime_UTR | 35.0% |
| CTTCTCCTTACAAAAACTCA+AGG | + | chr8_1:77214306-77214325 | Msa1215800:CDS | 35.0% | |
| GAGCAACAAAAACAACATGT+AGG | + | chr8_1:77214444-77214463 | Msa1215800:intron | 35.0% | |
| !! | AAGAAGTAACACTGATTCTG+AGG | + | chr8_1:77214595-77214614 | Msa1215800:CDS | 35.0% |
| AATGACCAACAAAAATGCAC+AGG | + | chr8_1:77214632-77214651 | Msa1215800:CDS | 35.0% | |
| !! | CTTTAGAAGCTGTTTTCTTC+AGG | - | chr8_1:77214661-77214680 | None:intergenic | 35.0% |
| ! | TAACTGGTTGTGTGATTTTC+TGG | - | chr8_1:77214687-77214706 | None:intergenic | 35.0% |
| ! | ATTATCTAAAGTGGCGCTAA+TGG | + | chr8_1:77214829-77214848 | Msa1215800:intron | 35.0% |
| !! | CTTCGTCCTTTGAAATTACA+AGG | + | chr8_1:77214876-77214895 | Msa1215800:intron | 35.0% |
| GACAAAATTTGTCAGCTTAG+TGG | - | chr8_1:77214913-77214932 | None:intergenic | 35.0% | |
| !! | AAGGCTTTATTCTCTTCTCT+TGG | + | chr8_1:77214961-77214980 | Msa1215800:intron | 35.0% |
| TATTCTCTTCTCTTGGTTTC+TGG | + | chr8_1:77214968-77214987 | Msa1215800:intron | 35.0% | |
| ACTAAATCCTTGTCAAAGGT+TGG | + | chr8_1:77215172-77215191 | Msa1215800:intron | 35.0% | |
| ! | TCTAGTATTGCCATTTACTG+AGG | - | chr8_1:77215325-77215344 | None:intergenic | 35.0% |
| TACTTCTAATTATCTCCCTG+AGG | + | chr8_1:77215395-77215414 | Msa1215800:CDS | 35.0% | |
| !!! | GCTGCAATTTTTTAAGGCTT+AGG | + | chr8_1:77215581-77215600 | Msa1215800:three_prime_UTR | 35.0% |
| CAATTAAGCTCTTCCTTGCA+AGG | + | chr8_1:77214164-77214183 | Msa1215800:five_prime_UTR | 40.0% | |
| !! | CAAGAAGGCCTCATTTTTGA+AGG | - | chr8_1:77214258-77214277 | None:intergenic | 40.0% |
| !!! | TCTTCCTTTTTTGTGTGTGC+AGG | + | chr8_1:77214390-77214409 | Msa1215800:intron | 40.0% |
| !!! | CTTCCTTTTTTGTGTGTGCA+GGG | + | chr8_1:77214391-77214410 | Msa1215800:intron | 40.0% |
| TATCCCTGCACACACAAAAA+AGG | - | chr8_1:77214397-77214416 | None:intergenic | 40.0% | |
| !! | AAGTTCACTTTTCTGACTGC+AGG | + | chr8_1:77214547-77214566 | Msa1215800:intron | 40.0% |
| CTTCATGAATCTGTGGTAAC+TGG | - | chr8_1:77214703-77214722 | None:intergenic | 40.0% | |
| ACAGAATGTGAAGAACACTG+AGG | + | chr8_1:77215287-77215306 | Msa1215800:intron | 40.0% | |
| TTATGTCTACAAGGTCCTCA+GGG | - | chr8_1:77215413-77215432 | None:intergenic | 40.0% | |
| CCATCTCAGTTATGTCTACA+AGG | - | chr8_1:77215422-77215441 | None:intergenic | 40.0% | |
| CCTTGTAGACATAACTGAGA+TGG | + | chr8_1:77215419-77215438 | Msa1215800:CDS | 40.0% | |
| !! | AGATGGATTATTCACCAGCT+AGG | + | chr8_1:77215436-77215455 | Msa1215800:CDS | 40.0% |
| CAATTAAGCTCTTCCTTGCA+AGG | + | chr8_1:77214164-77214183 | Msa1215800:five_prime_UTR | 40.0% | |
| !! | CAAGAAGGCCTCATTTTTGA+AGG | - | chr8_1:77214258-77214277 | None:intergenic | 40.0% |
| !!! | TCTTCCTTTTTTGTGTGTGC+AGG | + | chr8_1:77214390-77214409 | Msa1215800:intron | 40.0% |
| !!! | CTTCCTTTTTTGTGTGTGCA+GGG | + | chr8_1:77214391-77214410 | Msa1215800:intron | 40.0% |
| TATCCCTGCACACACAAAAA+AGG | - | chr8_1:77214397-77214416 | None:intergenic | 40.0% | |
| !! | AAGTTCACTTTTCTGACTGC+AGG | + | chr8_1:77214547-77214566 | Msa1215800:intron | 40.0% |
| CTTCATGAATCTGTGGTAAC+TGG | - | chr8_1:77214703-77214722 | None:intergenic | 40.0% | |
| ACAGAATGTGAAGAACACTG+AGG | + | chr8_1:77215287-77215306 | Msa1215800:intron | 40.0% | |
| TTATGTCTACAAGGTCCTCA+GGG | - | chr8_1:77215413-77215432 | None:intergenic | 40.0% | |
| CCATCTCAGTTATGTCTACA+AGG | - | chr8_1:77215422-77215441 | None:intergenic | 40.0% | |
| CCTTGTAGACATAACTGAGA+TGG | + | chr8_1:77215419-77215438 | Msa1215800:CDS | 40.0% | |
| !! | AGATGGATTATTCACCAGCT+AGG | + | chr8_1:77215436-77215455 | Msa1215800:CDS | 40.0% |
| !! | TTCAGGGTTTTGTCCTTGCA+AGG | - | chr8_1:77214180-77214199 | None:intergenic | 45.0% |
| AGAGAGACTGCTACACAAGA+AGG | - | chr8_1:77214273-77214292 | None:intergenic | 45.0% | |
| ! | ACTTTTCTGACTGCAGGATG+AGG | + | chr8_1:77214553-77214572 | Msa1215800:intron | 45.0% |
| ! | GGCTACCTGTGCATTTTTGT+TGG | - | chr8_1:77214640-77214659 | None:intergenic | 45.0% |
| GACCTAGACGACATAGATCT+AGG | + | chr8_1:77214732-77214751 | Msa1215800:intron | 45.0% | |
| TGCCTAGATCTATGTCGTCT+AGG | - | chr8_1:77214737-77214756 | None:intergenic | 45.0% | |
| TGTGAAGAACACTGAGGATG+TGG | + | chr8_1:77215293-77215312 | Msa1215800:CDS | 45.0% | |
| GAATGTGAATGGGGAAGCAA+AGG | + | chr8_1:77215350-77215369 | Msa1215800:CDS | 45.0% | |
| GTTATGTCTACAAGGTCCTC+AGG | - | chr8_1:77215414-77215433 | None:intergenic | 45.0% | |
| !! | ATGGGAGACTTTTTCCTAGC+TGG | - | chr8_1:77215453-77215472 | None:intergenic | 45.0% |
| !! | TTCAGGGTTTTGTCCTTGCA+AGG | - | chr8_1:77214180-77214199 | None:intergenic | 45.0% |
| AGAGAGACTGCTACACAAGA+AGG | - | chr8_1:77214273-77214292 | None:intergenic | 45.0% | |
| ! | ACTTTTCTGACTGCAGGATG+AGG | + | chr8_1:77214553-77214572 | Msa1215800:intron | 45.0% |
| ! | GGCTACCTGTGCATTTTTGT+TGG | - | chr8_1:77214640-77214659 | None:intergenic | 45.0% |
| GACCTAGACGACATAGATCT+AGG | + | chr8_1:77214732-77214751 | Msa1215800:intron | 45.0% | |
| TGCCTAGATCTATGTCGTCT+AGG | - | chr8_1:77214737-77214756 | None:intergenic | 45.0% | |
| TGTGAAGAACACTGAGGATG+TGG | + | chr8_1:77215293-77215312 | Msa1215800:CDS | 45.0% | |
| GAATGTGAATGGGGAAGCAA+AGG | + | chr8_1:77215350-77215369 | Msa1215800:CDS | 45.0% | |
| GTTATGTCTACAAGGTCCTC+AGG | - | chr8_1:77215414-77215433 | None:intergenic | 45.0% | |
| !! | ATGGGAGACTTTTTCCTAGC+TGG | - | chr8_1:77215453-77215472 | None:intergenic | 45.0% |
| !!! | AATTTTTTTAAAAGAAAAAA+AGG | - | chr8_1:77214793-77214812 | None:intergenic | 5.0% |
| !!! | TTTTTTCTTTTAAAAAAATT+AGG | + | chr8_1:77214793-77214812 | Msa1215800:intron | 5.0% |
| !!! | TTTTTCTTTTAAAAAAATTA+GGG | + | chr8_1:77214794-77214813 | Msa1215800:intron | 5.0% |
| !!! | AATTTTTTTAAAAGAAAAAA+AGG | - | chr8_1:77214793-77214812 | None:intergenic | 5.0% |
| !!! | TTTTTTCTTTTAAAAAAATT+AGG | + | chr8_1:77214793-77214812 | Msa1215800:intron | 5.0% |
| !!! | TTTTTCTTTTAAAAAAATTA+GGG | + | chr8_1:77214794-77214813 | Msa1215800:intron | 5.0% |
| TGTGTGTGCAGGGATACGTT+TGG | + | chr8_1:77214401-77214420 | Msa1215800:intron | 50.0% | |
| GTGTGTGCAGGGATACGTTT+GGG | + | chr8_1:77214402-77214421 | Msa1215800:intron | 50.0% | |
| GCAGGGATACGTTTGGGAAA+AGG | + | chr8_1:77214408-77214427 | Msa1215800:intron | 50.0% | |
| GTGGCTCACACCTCAGTAAA+TGG | + | chr8_1:77215312-77215331 | Msa1215800:CDS | 50.0% | |
| TGTGTGTGCAGGGATACGTT+TGG | + | chr8_1:77214401-77214420 | Msa1215800:intron | 50.0% | |
| GTGTGTGCAGGGATACGTTT+GGG | + | chr8_1:77214402-77214421 | Msa1215800:intron | 50.0% | |
| GCAGGGATACGTTTGGGAAA+AGG | + | chr8_1:77214408-77214427 | Msa1215800:intron | 50.0% | |
| GTGGCTCACACCTCAGTAAA+TGG | + | chr8_1:77215312-77215331 | Msa1215800:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 77214135 | 77215702 | 77214135 | ID=Msa1215800;Name=Msa1215800 |
| chr8_1 | mRNA | 77214135 | 77215702 | 77214135 | ID=Msa1215800-mRNA-1;Parent=Msa1215800;Name=Msa1215800-mRNA-1;_AED=0.21;_eAED=0.21;_QI=129|1|1|1|1|1|5|220|150 |
| chr8_1 | exon | 77214135 | 77214327 | 77214135 | ID=Msa1215800-mRNA-1:exon:26640;Parent=Msa1215800-mRNA-1 |
| chr8_1 | exon | 77214412 | 77214461 | 77214412 | ID=Msa1215800-mRNA-1:exon:26641;Parent=Msa1215800-mRNA-1 |
| chr8_1 | exon | 77214569 | 77214653 | 77214569 | ID=Msa1215800-mRNA-1:exon:26642;Parent=Msa1215800-mRNA-1 |
| chr8_1 | exon | 77215128 | 77215189 | 77215128 | ID=Msa1215800-mRNA-1:exon:26643;Parent=Msa1215800-mRNA-1 |
| chr8_1 | exon | 77215291 | 77215702 | 77215291 | ID=Msa1215800-mRNA-1:exon:26644;Parent=Msa1215800-mRNA-1 |
| chr8_1 | five_prime_UTR | 77214135 | 77214263 | 77214135 | ID=Msa1215800-mRNA-1:five_prime_utr;Parent=Msa1215800-mRNA-1 |
| chr8_1 | CDS | 77214264 | 77214327 | 77214264 | ID=Msa1215800-mRNA-1:cds;Parent=Msa1215800-mRNA-1 |
| chr8_1 | CDS | 77214412 | 77214461 | 77214412 | ID=Msa1215800-mRNA-1:cds;Parent=Msa1215800-mRNA-1 |
| chr8_1 | CDS | 77214569 | 77214653 | 77214569 | ID=Msa1215800-mRNA-1:cds;Parent=Msa1215800-mRNA-1 |
| chr8_1 | CDS | 77215128 | 77215189 | 77215128 | ID=Msa1215800-mRNA-1:cds;Parent=Msa1215800-mRNA-1 |
| chr8_1 | CDS | 77215291 | 77215482 | 77215291 | ID=Msa1215800-mRNA-1:cds;Parent=Msa1215800-mRNA-1 |
| chr8_1 | three_prime_UTR | 77215483 | 77215702 | 77215483 | ID=Msa1215800-mRNA-1:three_prime_utr;Parent=Msa1215800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
