Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426520 | XP_003609498.2 | 96.000 | 150 | 6 | 0 | 1 | 150 | 1 | 150 | 3.37e-91 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426520 | G7JGN5 | 96.000 | 150 | 6 | 0 | 1 | 150 | 1 | 150 | 1.61e-91 | 271 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002760 | Msa1426520 | 0.965887 | 3.435038e-125 | -8.615850e-47 |
| Msa0046090 | Msa1426520 | 0.810297 | 1.236482e-50 | -8.615850e-47 |
| Msa1349720 | Msa1426520 | 0.815045 | 1.130248e-51 | -8.615850e-47 |
| Msa1426520 | Msa1444750 | 0.818242 | 2.171225e-52 | -8.615850e-47 |
| Msa1426520 | Msa1455000 | 0.802043 | 6.764362e-49 | -8.615850e-47 |
| Msa0606230 | Msa1426520 | 0.800168 | 1.635932e-48 | -8.615850e-47 |
| Msa0646710 | Msa1426520 | 0.824265 | 8.863234e-54 | -8.615850e-47 |
| Msa0649140 | Msa1426520 | 0.805388 | 1.367213e-49 | -8.615850e-47 |
| Msa0774090 | Msa1426520 | 0.800089 | 1.697456e-48 | -8.615850e-47 |
| Msa0823760 | Msa1426520 | 0.803714 | 3.055022e-49 | -8.615850e-47 |
| Msa0147070 | Msa1426520 | 0.800625 | 1.320208e-48 | -8.615850e-47 |
| Msa1236090 | Msa1426520 | 0.803434 | 3.492054e-49 | -8.615850e-47 |
| Msa1264670 | Msa1426520 | 0.814630 | 1.396946e-51 | -8.615850e-47 |
| Msa1301620 | Msa1426520 | 0.842387 | 2.667860e-58 | -8.615850e-47 |
| Msa1324940 | Msa1426520 | 0.802455 | 5.564626e-49 | -8.615850e-47 |
| Msa1337950 | Msa1426520 | 0.802258 | 6.110921e-49 | -8.615850e-47 |
| Msa0463980 | Msa1426520 | 0.801722 | 7.874812e-49 | -8.615850e-47 |
| Msa0266100 | Msa1426520 | 0.820166 | 7.918010e-53 | -8.615850e-47 |
| Msa0335860 | Msa1426520 | 0.804299 | 2.309643e-49 | -8.615850e-47 |
| Msa1189630 | Msa1426520 | 0.813528 | 2.445939e-51 | -8.615850e-47 |
| Msa1215800 | Msa1426520 | 0.965024 | 4.523479e-124 | -8.615850e-47 |
| Msa0550280 | Msa1426520 | 0.830287 | 3.198092e-55 | -8.615850e-47 |
| Msa0574450 | Msa1426520 | 0.808330 | 3.265252e-50 | -8.615850e-47 |
| Msa0959970 | Msa1426520 | 0.814368 | 1.596395e-51 | -8.615850e-47 |
| Msa0970120 | Msa1426520 | 0.821789 | 3.349176e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1426520 | MtrunA17_Chr4g0065091 | 96.000 | 150 | 6 | 0 | 1 | 150 | 1 | 150 | 3.10e-95 | 271 |
| Msa1426520 | MtrunA17_Chr2g0304701 | 46.809 | 141 | 63 | 5 | 18 | 150 | 17 | 153 | 7.94e-30 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACAAAAGTTCCTTATATT+TGG | 0.128182 | tig0026053:-37274 | Msa1426520:three_prime_UTR |
| AGCTTAATTGAGTATAAAAT+TGG | 0.220335 | tig0026053:+38628 | None:intergenic |
| ATTATATTTATCCAAATATA+AGG | 0.261298 | tig0026053:+37263 | None:intergenic |
| GTGGCTCACACCTCAGTAAA+TGG | 0.325930 | tig0026053:-37468 | Msa1426520:CDS |
| TAGACTCAATTAATTGTGTA+TGG | 0.388334 | tig0026053:+37311 | None:intergenic |
| CTGCAGGAAATATAAAGAAT+AGG | 0.441652 | tig0026053:-37659 | Msa1426520:intron |
| CTAGAAATGTGAATGTGAAT+GGG | 0.472633 | tig0026053:-37440 | Msa1426520:CDS |
| GTGTGTGCAGGGATACGTTT+GGG | 0.472885 | tig0026053:-38378 | Msa1426520:intron |
| GTTATGTCTACAAGGTCCTC+AGG | 0.481183 | tig0026053:+37369 | None:intergenic |
| ACTAGAAATGTGAATGTGAA+TGG | 0.484726 | tig0026053:-37441 | Msa1426520:CDS |
| GCAGGGATACGTTTGGGAAA+AGG | 0.491954 | tig0026053:-38372 | Msa1426520:intron |
| TGTGTGTGCAGGGATACGTT+TGG | 0.497727 | tig0026053:-38379 | Msa1426520:intron |
| TACAACTAAATCCTTGTCAA+AGG | 0.499214 | tig0026053:-37613 | Msa1426520:intron |
| CCATCTCAGTTATGTCTACA+AGG | 0.517334 | tig0026053:+37361 | None:intergenic |
| CAATTAAGCTCTTCCTTGCA+AGG | 0.550203 | tig0026053:-38615 | Msa1426520:five_prime_UTR |
| CCTTGTAGACATAACTGAGA+TGG | 0.558484 | tig0026053:-37361 | Msa1426520:CDS |
| TTTAGTTGTAGAAATTGAAG+TGG | 0.566395 | tig0026053:+37626 | None:intergenic |
| TGTGAAGAACACTGAGGATG+TGG | 0.567568 | tig0026053:-37487 | Msa1426520:CDS |
| ATACACAATTAATTGAGTCT+AGG | 0.573043 | tig0026053:-37309 | Msa1426520:exon |
| AGAGAGACTGCTACACAAGA+AGG | 0.574354 | tig0026053:+38509 | None:intergenic |
| AGACTCAATTAATTGTGTAT+GGG | 0.578163 | tig0026053:+37312 | None:intergenic |
| AAGAAGTAACACTGATTCTG+AGG | 0.585024 | tig0026053:-38186 | Msa1426520:CDS |
| AGATGGATTATTCACCAGCT+AGG | 0.588549 | tig0026053:-37344 | Msa1426520:CDS |
| TCTAGTATTGCCATTTACTG+AGG | 0.596383 | tig0026053:+37458 | None:intergenic |
| TTATAAACCAACCTTTGACA+AGG | 0.606206 | tig0026053:+37602 | None:intergenic |
| TTATGTCTACAAGGTCCTCA+GGG | 0.619907 | tig0026053:+37370 | None:intergenic |
| TAGAAATGTGAATGTGAATG+GGG | 0.652177 | tig0026053:-37439 | Msa1426520:CDS |
| GAATGTGAATGGGGAAGCAA+AGG | 0.660105 | tig0026053:-37430 | Msa1426520:CDS |
| TACTTCTAATTATCTCCCTG+AGG | 0.676211 | tig0026053:-37385 | Msa1426520:CDS |
| ACAGAATGTGAAGAACACTG+AGG | 0.882326 | tig0026053:-37493 | Msa1426520:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTTAAAAAAAAAA+AGG | + | tig0026053:37758-37777 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTTTAAAAAAATT+AGG | - | tig0026053:37757-37776 | Msa1426520:intron | 0.0% |
| !!! | TTTTTTTTTTAAAAAAATTA+GGG | - | tig0026053:37758-37777 | Msa1426520:intron | 0.0% |
| !!! | TAATTTTTTTAAAAAAAAAA+AGG | + | tig0026053:37758-37777 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTTTAAAAAAATT+AGG | - | tig0026053:37757-37776 | Msa1426520:intron | 0.0% |
| !!! | TTTTTTTTTTAAAAAAATTA+GGG | - | tig0026053:37758-37777 | Msa1426520:intron | 0.0% |
| !! | TAAAATTATATTATAAACCT+TGG | - | tig0026053:38175-38194 | Msa1426520:CDS | 10.0% |
| !! | AATAAAGATGTAAAAAAAAA+GGG | + | tig0026053:38206-38225 | None:intergenic | 10.0% |
| !! | AAATAAAGATGTAAAAAAAA+AGG | + | tig0026053:38207-38226 | None:intergenic | 10.0% |
| !! | ATTATATTTATCCAAATATA+AGG | + | tig0026053:38485-38504 | None:intergenic | 10.0% |
| !! | TAAAATTATATTATAAACCT+TGG | - | tig0026053:38175-38194 | Msa1426520:CDS | 10.0% |
| !! | AATAAAGATGTAAAAAAAAA+GGG | + | tig0026053:38206-38225 | None:intergenic | 10.0% |
| !! | AAATAAAGATGTAAAAAAAA+AGG | + | tig0026053:38207-38226 | None:intergenic | 10.0% |
| !! | ATTATATTTATCCAAATATA+AGG | + | tig0026053:38485-38504 | None:intergenic | 10.0% |
| !! | TAATTAAATTTCTTTCATGA+TGG | + | tig0026053:37993-38012 | None:intergenic | 15.0% |
| !! | ATCATGAAAGAAATTTAATT+AGG | - | tig0026053:37992-38011 | Msa1426520:intron | 15.0% |
| !! | TAATTAAATTTCTTTCATGA+TGG | + | tig0026053:37993-38012 | None:intergenic | 15.0% |
| !! | ATCATGAAAGAAATTTAATT+AGG | - | tig0026053:37992-38011 | Msa1426520:intron | 15.0% |
| !!! | AAAATTGGAAATTTTAAGAG+TGG | + | tig0026053:37105-37124 | None:intergenic | 20.0% |
| !! | AGCTTAATTGAGTATAAAAT+TGG | + | tig0026053:37120-37139 | None:intergenic | 20.0% |
| !!! | AGAAAATCACACATTTTATT+TGG | - | tig0026053:37165-37184 | Msa1426520:three_prime_UTR | 20.0% |
| !!! | TTTTAAAAAAATTAGGGTAG+TGG | - | tig0026053:37764-37783 | Msa1426520:intron | 20.0% |
| !! | TGGAAAATTATTATCTAAAG+TGG | - | tig0026053:37784-37803 | Msa1426520:intron | 20.0% |
| !! | TCAAATCTACAATTGTAAAA+TGG | + | tig0026053:37819-37838 | None:intergenic | 20.0% |
| !!! | AAAATTGGAAATTTTAAGAG+TGG | + | tig0026053:37105-37124 | None:intergenic | 20.0% |
| !! | AGCTTAATTGAGTATAAAAT+TGG | + | tig0026053:37120-37139 | None:intergenic | 20.0% |
| !!! | AGAAAATCACACATTTTATT+TGG | - | tig0026053:37165-37184 | Msa1426520:three_prime_UTR | 20.0% |
| !!! | TTTTAAAAAAATTAGGGTAG+TGG | - | tig0026053:37764-37783 | Msa1426520:intron | 20.0% |
| !! | TGGAAAATTATTATCTAAAG+TGG | - | tig0026053:37784-37803 | Msa1426520:intron | 20.0% |
| !! | TCAAATCTACAATTGTAAAA+TGG | + | tig0026053:37819-37838 | None:intergenic | 20.0% |
| !! | AAAATGTGTGATTTTCTTCA+GGG | + | tig0026053:37162-37181 | None:intergenic | 25.0% |
| !! | TAAAATGTGTGATTTTCTTC+AGG | + | tig0026053:37163-37182 | None:intergenic | 25.0% |
| !! | ATTTACCTTGAGTTTTTGTA+AGG | + | tig0026053:37280-37299 | None:intergenic | 25.0% |
| ! | AAAAAGGAAGAAAAAACTTG+TGG | + | tig0026053:37742-37761 | None:intergenic | 25.0% |
| ! | ATATGTCCTTGTAATTTCAA+AGG | + | tig0026053:37849-37868 | None:intergenic | 25.0% |
| !! | TTGCATAGTCATAAGTTTTT+GGG | + | tig0026053:37899-37918 | None:intergenic | 25.0% |
| !! | TTTGCATAGTCATAAGTTTT+TGG | + | tig0026053:37900-37919 | None:intergenic | 25.0% |
| !!! | AATGTTTTTATTTTTGCTGC+AGG | - | tig0026053:38070-38089 | Msa1426520:intron | 25.0% |
| ! | TTTAGTTGTAGAAATTGAAG+TGG | + | tig0026053:38122-38141 | None:intergenic | 25.0% |
| ! | AAAAAAAAAGGGAAATTCCA+AGG | + | tig0026053:38195-38214 | None:intergenic | 25.0% |
| ! | AGACTCAATTAATTGTGTAT+GGG | + | tig0026053:38436-38455 | None:intergenic | 25.0% |
| ! | TAGACTCAATTAATTGTGTA+TGG | + | tig0026053:38437-38456 | None:intergenic | 25.0% |
| ! | ATACACAATTAATTGAGTCT+AGG | - | tig0026053:38436-38455 | Msa1426520:intron | 25.0% |
| ! | AGACAAAAGTTCCTTATATT+TGG | - | tig0026053:38471-38490 | Msa1426520:intron | 25.0% |
| !!! | AGAAATGCTGCAATTTTTTA+AGG | - | tig0026053:38538-38557 | Msa1426520:five_prime_UTR | 25.0% |
| !! | AAAATGTGTGATTTTCTTCA+GGG | + | tig0026053:37162-37181 | None:intergenic | 25.0% |
| !! | TAAAATGTGTGATTTTCTTC+AGG | + | tig0026053:37163-37182 | None:intergenic | 25.0% |
| !! | ATTTACCTTGAGTTTTTGTA+AGG | + | tig0026053:37280-37299 | None:intergenic | 25.0% |
| ! | AAAAAGGAAGAAAAAACTTG+TGG | + | tig0026053:37742-37761 | None:intergenic | 25.0% |
| ! | ATATGTCCTTGTAATTTCAA+AGG | + | tig0026053:37849-37868 | None:intergenic | 25.0% |
| !! | TTGCATAGTCATAAGTTTTT+GGG | + | tig0026053:37899-37918 | None:intergenic | 25.0% |
| !! | TTTGCATAGTCATAAGTTTT+TGG | + | tig0026053:37900-37919 | None:intergenic | 25.0% |
| !!! | AATGTTTTTATTTTTGCTGC+AGG | - | tig0026053:38070-38089 | Msa1426520:intron | 25.0% |
| ! | TTTAGTTGTAGAAATTGAAG+TGG | + | tig0026053:38122-38141 | None:intergenic | 25.0% |
| ! | AAAAAAAAAGGGAAATTCCA+AGG | + | tig0026053:38195-38214 | None:intergenic | 25.0% |
| ! | AGACTCAATTAATTGTGTAT+GGG | + | tig0026053:38436-38455 | None:intergenic | 25.0% |
| ! | TAGACTCAATTAATTGTGTA+TGG | + | tig0026053:38437-38456 | None:intergenic | 25.0% |
| ! | ATACACAATTAATTGAGTCT+AGG | - | tig0026053:38436-38455 | Msa1426520:intron | 25.0% |
| ! | AGACAAAAGTTCCTTATATT+TGG | - | tig0026053:38471-38490 | Msa1426520:intron | 25.0% |
| !!! | AGAAATGCTGCAATTTTTTA+AGG | - | tig0026053:38538-38557 | Msa1426520:five_prime_UTR | 25.0% |
| !! | CATTTTTGAAGGAAAATCTG+TGG | + | tig0026053:37213-37232 | None:intergenic | 30.0% |
| ! | CAGATTTTCCTTCAAAAATG+AGG | - | tig0026053:37213-37232 | Msa1426520:three_prime_UTR | 30.0% |
| GGAAGATTAGAAATGTAACA+AGG | + | tig0026053:37342-37361 | None:intergenic | 30.0% | |
| ! | ATGCATGCTTTCACATTTTA+TGG | - | tig0026053:37476-37495 | Msa1426520:CDS | 30.0% |
| !!! | AGTGTTACTTCTTTTCAACA+AGG | + | tig0026053:37552-37571 | None:intergenic | 30.0% |
| TAGTAATCTTCATGAATCTG+TGG | + | tig0026053:37674-37693 | None:intergenic | 30.0% | |
| CAGATTCATGAAGATTACTA+TGG | - | tig0026053:37674-37693 | Msa1426520:intron | 30.0% | |
| TGTGGACTTGAAAAAACTAA+TGG | + | tig0026053:37724-37743 | None:intergenic | 30.0% | |
| TATGACTATGCAAAAATGCA+AGG | - | tig0026053:37906-37925 | Msa1426520:intron | 30.0% | |
| CTGCAGGAAATATAAAGAAT+AGG | - | tig0026053:38086-38105 | Msa1426520:intron | 30.0% | |
| TACAACTAAATCCTTGTCAA+AGG | - | tig0026053:38132-38151 | Msa1426520:intron | 30.0% | |
| TTATAAACCAACCTTTGACA+AGG | + | tig0026053:38146-38165 | None:intergenic | 30.0% | |
| ACTAGAAATGTGAATGTGAA+TGG | - | tig0026053:38304-38323 | Msa1426520:intron | 30.0% | |
| CTAGAAATGTGAATGTGAAT+GGG | - | tig0026053:38305-38324 | Msa1426520:intron | 30.0% | |
| TAGAAATGTGAATGTGAATG+GGG | - | tig0026053:38306-38325 | Msa1426520:intron | 30.0% | |
| !!! | CTGCAATTTTTTAAGGCTTA+GGG | - | tig0026053:38545-38564 | Msa1426520:five_prime_UTR | 30.0% |
| !! | CATTTTTGAAGGAAAATCTG+TGG | + | tig0026053:37213-37232 | None:intergenic | 30.0% |
| ! | CAGATTTTCCTTCAAAAATG+AGG | - | tig0026053:37213-37232 | Msa1426520:three_prime_UTR | 30.0% |
| GGAAGATTAGAAATGTAACA+AGG | + | tig0026053:37342-37361 | None:intergenic | 30.0% | |
| ! | ATGCATGCTTTCACATTTTA+TGG | - | tig0026053:37476-37495 | Msa1426520:CDS | 30.0% |
| !!! | AGTGTTACTTCTTTTCAACA+AGG | + | tig0026053:37552-37571 | None:intergenic | 30.0% |
| TAGTAATCTTCATGAATCTG+TGG | + | tig0026053:37674-37693 | None:intergenic | 30.0% | |
| CAGATTCATGAAGATTACTA+TGG | - | tig0026053:37674-37693 | Msa1426520:intron | 30.0% | |
| TGTGGACTTGAAAAAACTAA+TGG | + | tig0026053:37724-37743 | None:intergenic | 30.0% | |
| TATGACTATGCAAAAATGCA+AGG | - | tig0026053:37906-37925 | Msa1426520:intron | 30.0% | |
| CTGCAGGAAATATAAAGAAT+AGG | - | tig0026053:38086-38105 | Msa1426520:intron | 30.0% | |
| TACAACTAAATCCTTGTCAA+AGG | - | tig0026053:38132-38151 | Msa1426520:intron | 30.0% | |
| TTATAAACCAACCTTTGACA+AGG | + | tig0026053:38146-38165 | None:intergenic | 30.0% | |
| ACTAGAAATGTGAATGTGAA+TGG | - | tig0026053:38304-38323 | Msa1426520:intron | 30.0% | |
| CTAGAAATGTGAATGTGAAT+GGG | - | tig0026053:38305-38324 | Msa1426520:intron | 30.0% | |
| TAGAAATGTGAATGTGAATG+GGG | - | tig0026053:38306-38325 | Msa1426520:intron | 30.0% | |
| !!! | CTGCAATTTTTTAAGGCTTA+GGG | - | tig0026053:38545-38564 | Msa1426520:five_prime_UTR | 30.0% |
| CTTCTCCTTACAAAAACTCA+AGG | - | tig0026053:37272-37291 | Msa1426520:three_prime_UTR | 35.0% | |
| GAGCAACAAAAACAACATGT+AGG | - | tig0026053:37409-37428 | Msa1426520:CDS | 35.0% | |
| !! | AAGAAGTAACACTGATTCTG+AGG | - | tig0026053:37559-37578 | Msa1426520:intron | 35.0% |
| AATGACCAACAAAAATGCAC+AGG | - | tig0026053:37596-37615 | Msa1426520:intron | 35.0% | |
| !! | CTTTAGAAGCTGTTTTCTTC+AGG | + | tig0026053:37625-37644 | None:intergenic | 35.0% |
| ! | TAACTGGTTGTGTGATTTTC+TGG | + | tig0026053:37651-37670 | None:intergenic | 35.0% |
| ! | ATTATCTAAAGTGGCGCTAA+TGG | - | tig0026053:37793-37812 | Msa1426520:intron | 35.0% |
| !! | CTTCGTCCTTTGAAATTACA+AGG | - | tig0026053:37840-37859 | Msa1426520:intron | 35.0% |
| GACAAAATTTGTCAGCTTAG+TGG | + | tig0026053:37877-37896 | None:intergenic | 35.0% | |
| !! | AAGGCTTTATTCTCTTCTCT+TGG | - | tig0026053:37925-37944 | Msa1426520:intron | 35.0% |
| TATTCTCTTCTCTTGGTTTC+TGG | - | tig0026053:37932-37951 | Msa1426520:intron | 35.0% | |
| ACTAAATCCTTGTCAAAGGT+TGG | - | tig0026053:38136-38155 | Msa1426520:intron | 35.0% | |
| ! | TCTAGTATTGCCATTTACTG+AGG | + | tig0026053:38290-38309 | None:intergenic | 35.0% |
| TACTTCTAATTATCTCCCTG+AGG | - | tig0026053:38360-38379 | Msa1426520:CDS | 35.0% | |
| !!! | GCTGCAATTTTTTAAGGCTT+AGG | - | tig0026053:38544-38563 | Msa1426520:five_prime_UTR | 35.0% |
| CTTCTCCTTACAAAAACTCA+AGG | - | tig0026053:37272-37291 | Msa1426520:three_prime_UTR | 35.0% | |
| GAGCAACAAAAACAACATGT+AGG | - | tig0026053:37409-37428 | Msa1426520:CDS | 35.0% | |
| !! | AAGAAGTAACACTGATTCTG+AGG | - | tig0026053:37559-37578 | Msa1426520:intron | 35.0% |
| AATGACCAACAAAAATGCAC+AGG | - | tig0026053:37596-37615 | Msa1426520:intron | 35.0% | |
| !! | CTTTAGAAGCTGTTTTCTTC+AGG | + | tig0026053:37625-37644 | None:intergenic | 35.0% |
| ! | TAACTGGTTGTGTGATTTTC+TGG | + | tig0026053:37651-37670 | None:intergenic | 35.0% |
| ! | ATTATCTAAAGTGGCGCTAA+TGG | - | tig0026053:37793-37812 | Msa1426520:intron | 35.0% |
| !! | CTTCGTCCTTTGAAATTACA+AGG | - | tig0026053:37840-37859 | Msa1426520:intron | 35.0% |
| GACAAAATTTGTCAGCTTAG+TGG | + | tig0026053:37877-37896 | None:intergenic | 35.0% | |
| !! | AAGGCTTTATTCTCTTCTCT+TGG | - | tig0026053:37925-37944 | Msa1426520:intron | 35.0% |
| TATTCTCTTCTCTTGGTTTC+TGG | - | tig0026053:37932-37951 | Msa1426520:intron | 35.0% | |
| ACTAAATCCTTGTCAAAGGT+TGG | - | tig0026053:38136-38155 | Msa1426520:intron | 35.0% | |
| ! | TCTAGTATTGCCATTTACTG+AGG | + | tig0026053:38290-38309 | None:intergenic | 35.0% |
| TACTTCTAATTATCTCCCTG+AGG | - | tig0026053:38360-38379 | Msa1426520:CDS | 35.0% | |
| !!! | GCTGCAATTTTTTAAGGCTT+AGG | - | tig0026053:38544-38563 | Msa1426520:five_prime_UTR | 35.0% |
| CAATTAAGCTCTTCCTTGCA+AGG | - | tig0026053:37130-37149 | Msa1426520:three_prime_UTR | 40.0% | |
| !! | CAAGAAGGCCTCATTTTTGA+AGG | + | tig0026053:37224-37243 | None:intergenic | 40.0% |
| ! | ATCTTCCTTTTTGTGTGTGC+AGG | - | tig0026053:37355-37374 | Msa1426520:CDS | 40.0% |
| ! | TCTTCCTTTTTGTGTGTGCA+GGG | - | tig0026053:37356-37375 | Msa1426520:CDS | 40.0% |
| !! | AAGTTCACTTTTCTGACTGC+AGG | - | tig0026053:37511-37530 | Msa1426520:intron | 40.0% |
| CTTCATGAATCTGTGGTAAC+TGG | + | tig0026053:37667-37686 | None:intergenic | 40.0% | |
| ACAGAATGTGAAGAACACTG+AGG | - | tig0026053:38252-38271 | Msa1426520:intron | 40.0% | |
| TTATGTCTACAAGGTCCTCA+GGG | + | tig0026053:38378-38397 | None:intergenic | 40.0% | |
| CCATCTCAGTTATGTCTACA+AGG | + | tig0026053:38387-38406 | None:intergenic | 40.0% | |
| CCTTGTAGACATAACTGAGA+TGG | - | tig0026053:38384-38403 | Msa1426520:intron | 40.0% | |
| !! | AGATGGATTATTCACCAGCT+AGG | - | tig0026053:38401-38420 | Msa1426520:intron | 40.0% |
| CAATTAAGCTCTTCCTTGCA+AGG | - | tig0026053:37130-37149 | Msa1426520:three_prime_UTR | 40.0% | |
| !! | CAAGAAGGCCTCATTTTTGA+AGG | + | tig0026053:37224-37243 | None:intergenic | 40.0% |
| ! | ATCTTCCTTTTTGTGTGTGC+AGG | - | tig0026053:37355-37374 | Msa1426520:CDS | 40.0% |
| ! | TCTTCCTTTTTGTGTGTGCA+GGG | - | tig0026053:37356-37375 | Msa1426520:CDS | 40.0% |
| !! | AAGTTCACTTTTCTGACTGC+AGG | - | tig0026053:37511-37530 | Msa1426520:intron | 40.0% |
| CTTCATGAATCTGTGGTAAC+TGG | + | tig0026053:37667-37686 | None:intergenic | 40.0% | |
| ACAGAATGTGAAGAACACTG+AGG | - | tig0026053:38252-38271 | Msa1426520:intron | 40.0% | |
| TTATGTCTACAAGGTCCTCA+GGG | + | tig0026053:38378-38397 | None:intergenic | 40.0% | |
| CCATCTCAGTTATGTCTACA+AGG | + | tig0026053:38387-38406 | None:intergenic | 40.0% | |
| CCTTGTAGACATAACTGAGA+TGG | - | tig0026053:38384-38403 | Msa1426520:intron | 40.0% | |
| !! | AGATGGATTATTCACCAGCT+AGG | - | tig0026053:38401-38420 | Msa1426520:intron | 40.0% |
| !! | TTCAGGGTTTTGTCCTTGCA+AGG | + | tig0026053:37146-37165 | None:intergenic | 45.0% |
| AGAGAGACTGCTACACAAGA+AGG | + | tig0026053:37239-37258 | None:intergenic | 45.0% | |
| GTATCCCTGCACACACAAAA+AGG | + | tig0026053:37363-37382 | None:intergenic | 45.0% | |
| ! | ACTTTTCTGACTGCAGGATG+AGG | - | tig0026053:37517-37536 | Msa1426520:intron | 45.0% |
| ! | GGCTACCTGTGCATTTTTGT+TGG | + | tig0026053:37604-37623 | None:intergenic | 45.0% |
| GACCTAGACGACATAGATCT+AGG | - | tig0026053:37696-37715 | Msa1426520:intron | 45.0% | |
| TGCCTAGATCTATGTCGTCT+AGG | + | tig0026053:37701-37720 | None:intergenic | 45.0% | |
| TGTGAAGAACACTGAGGATG+TGG | - | tig0026053:38258-38277 | Msa1426520:intron | 45.0% | |
| GAATGTGAATGGGGAAGCAA+AGG | - | tig0026053:38315-38334 | Msa1426520:intron | 45.0% | |
| GTTATGTCTACAAGGTCCTC+AGG | + | tig0026053:38379-38398 | None:intergenic | 45.0% | |
| !! | ATGGGAGACTTTTTCCTAGC+TGG | + | tig0026053:38418-38437 | None:intergenic | 45.0% |
| !! | TTCAGGGTTTTGTCCTTGCA+AGG | + | tig0026053:37146-37165 | None:intergenic | 45.0% |
| AGAGAGACTGCTACACAAGA+AGG | + | tig0026053:37239-37258 | None:intergenic | 45.0% | |
| GTATCCCTGCACACACAAAA+AGG | + | tig0026053:37363-37382 | None:intergenic | 45.0% | |
| ! | ACTTTTCTGACTGCAGGATG+AGG | - | tig0026053:37517-37536 | Msa1426520:intron | 45.0% |
| ! | GGCTACCTGTGCATTTTTGT+TGG | + | tig0026053:37604-37623 | None:intergenic | 45.0% |
| GACCTAGACGACATAGATCT+AGG | - | tig0026053:37696-37715 | Msa1426520:intron | 45.0% | |
| TGCCTAGATCTATGTCGTCT+AGG | + | tig0026053:37701-37720 | None:intergenic | 45.0% | |
| TGTGAAGAACACTGAGGATG+TGG | - | tig0026053:38258-38277 | Msa1426520:intron | 45.0% | |
| GAATGTGAATGGGGAAGCAA+AGG | - | tig0026053:38315-38334 | Msa1426520:intron | 45.0% | |
| GTTATGTCTACAAGGTCCTC+AGG | + | tig0026053:38379-38398 | None:intergenic | 45.0% | |
| !! | ATGGGAGACTTTTTCCTAGC+TGG | + | tig0026053:38418-38437 | None:intergenic | 45.0% |
| TGTGTGTGCAGGGATACGTT+TGG | - | tig0026053:37366-37385 | Msa1426520:CDS | 50.0% | |
| GTGTGTGCAGGGATACGTTT+GGG | - | tig0026053:37367-37386 | Msa1426520:CDS | 50.0% | |
| GCAGGGATACGTTTGGGAAA+AGG | - | tig0026053:37373-37392 | Msa1426520:CDS | 50.0% | |
| GTGGCTCACACCTCAGTAAA+TGG | - | tig0026053:38277-38296 | Msa1426520:intron | 50.0% | |
| TGTGTGTGCAGGGATACGTT+TGG | - | tig0026053:37366-37385 | Msa1426520:CDS | 50.0% | |
| GTGTGTGCAGGGATACGTTT+GGG | - | tig0026053:37367-37386 | Msa1426520:CDS | 50.0% | |
| GCAGGGATACGTTTGGGAAA+AGG | - | tig0026053:37373-37392 | Msa1426520:CDS | 50.0% | |
| GTGGCTCACACCTCAGTAAA+TGG | - | tig0026053:38277-38296 | Msa1426520:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026053 | gene | 37102 | 38665 | 37102 | ID=Msa1426520;Name=Msa1426520 |
| tig0026053 | mRNA | 37102 | 38665 | 37102 | ID=Msa1426520-mRNA-1;Parent=Msa1426520;Name=Msa1426520-mRNA-1;_AED=0.23;_eAED=0.23;_QI=128|1|1|1|1|1|5|218|150 |
| tig0026053 | exon | 37102 | 37511 | 37102 | ID=Msa1426520-mRNA-1:exon:5009;Parent=Msa1426520-mRNA-1 |
| tig0026053 | exon | 37614 | 37675 | 37614 | ID=Msa1426520-mRNA-1:exon:5008;Parent=Msa1426520-mRNA-1 |
| tig0026053 | exon | 38150 | 38234 | 38150 | ID=Msa1426520-mRNA-1:exon:5007;Parent=Msa1426520-mRNA-1 |
| tig0026053 | exon | 38341 | 38390 | 38341 | ID=Msa1426520-mRNA-1:exon:5006;Parent=Msa1426520-mRNA-1 |
| tig0026053 | exon | 38474 | 38665 | 38474 | ID=Msa1426520-mRNA-1:exon:5005;Parent=Msa1426520-mRNA-1 |
| tig0026053 | five_prime_UTR | 38538 | 38665 | 38538 | ID=Msa1426520-mRNA-1:five_prime_utr;Parent=Msa1426520-mRNA-1 |
| tig0026053 | CDS | 38474 | 38537 | 38474 | ID=Msa1426520-mRNA-1:cds;Parent=Msa1426520-mRNA-1 |
| tig0026053 | CDS | 38341 | 38390 | 38341 | ID=Msa1426520-mRNA-1:cds;Parent=Msa1426520-mRNA-1 |
| tig0026053 | CDS | 38150 | 38234 | 38150 | ID=Msa1426520-mRNA-1:cds;Parent=Msa1426520-mRNA-1 |
| tig0026053 | CDS | 37614 | 37675 | 37614 | ID=Msa1426520-mRNA-1:cds;Parent=Msa1426520-mRNA-1 |
| tig0026053 | CDS | 37320 | 37511 | 37320 | ID=Msa1426520-mRNA-1:cds;Parent=Msa1426520-mRNA-1 |
| tig0026053 | three_prime_UTR | 37102 | 37319 | 37102 | ID=Msa1426520-mRNA-1:three_prime_utr;Parent=Msa1426520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
