Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002760 | G7JGN5 | 96.000 | 150 | 6 | 0 | 1 | 150 | 1 | 150 | 1.61e-91 | 271 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002760 | Msa0037300 | 0.802351 | 5.847827e-49 | -8.615850e-47 |
| Msa0002760 | Msa0046090 | 0.825909 | 3.625196e-54 | -8.615850e-47 |
| Msa0002760 | Msa0058970 | 0.800311 | 1.529673e-48 | -8.615850e-47 |
| Msa0002760 | Msa0081300 | 0.804741 | 1.867228e-49 | -8.615850e-47 |
| Msa0002760 | Msa0093830 | 0.812039 | 5.179853e-51 | -8.615850e-47 |
| Msa0002760 | Msa0124070 | 0.804270 | 2.341748e-49 | -8.615850e-47 |
| Msa0002760 | Msa0147070 | 0.813044 | 3.123994e-51 | -8.615850e-47 |
| Msa0002760 | Msa0178020 | 0.802058 | 6.718300e-49 | -8.615850e-47 |
| Msa0002760 | Msa0185770 | 0.805396 | 1.362341e-49 | -8.615850e-47 |
| Msa0002760 | Msa0186750 | 0.808812 | 2.576765e-50 | -8.615850e-47 |
| Msa0002760 | Msa0266100 | 0.835994 | 1.213200e-56 | -8.615850e-47 |
| Msa0002760 | Msa0280120 | 0.800042 | 1.734801e-48 | -8.615850e-47 |
| Msa0002760 | Msa0335860 | 0.819744 | 9.889359e-53 | -8.615850e-47 |
| Msa0002760 | Msa0341710 | 0.800666 | 1.295128e-48 | -8.615850e-47 |
| Msa0002760 | Msa0371050 | 0.801420 | 9.079139e-49 | -8.615850e-47 |
| Msa0002760 | Msa0378570 | 0.803563 | 3.284314e-49 | -8.615850e-47 |
| Msa0002760 | Msa0463980 | 0.806101 | 9.686311e-50 | -8.615850e-47 |
| Msa0002760 | Msa0466070 | 0.804094 | 2.547500e-49 | -8.615850e-47 |
| Msa0002760 | Msa0475080 | 0.800792 | 1.220354e-48 | -8.615850e-47 |
| Msa0002760 | Msa0550280 | 0.838369 | 2.996201e-57 | -8.615850e-47 |
| Msa0002760 | Msa0574450 | 0.823427 | 1.393498e-53 | -8.615850e-47 |
| Msa0002760 | Msa0577910 | 0.802900 | 4.505496e-49 | -8.615850e-47 |
| Msa0002760 | Msa0605670 | 0.808665 | 2.770183e-50 | -8.615850e-47 |
| Msa0002760 | Msa0623350 | 0.803071 | 4.152338e-49 | -8.615850e-47 |
| Msa0002760 | Msa0646710 | 0.828121 | 1.072233e-54 | -8.615850e-47 |
| Msa0002760 | Msa0649140 | 0.818448 | 1.949904e-52 | -8.615850e-47 |
| Msa0002760 | Msa0708120 | 0.801264 | 9.773484e-49 | -8.615850e-47 |
| Msa0002760 | Msa0726000 | 0.806078 | 9.795591e-50 | -8.615850e-47 |
| Msa0002760 | Msa0774090 | 0.803381 | 3.581948e-49 | -8.615850e-47 |
| Msa0002760 | Msa0775970 | 0.808831 | 2.552365e-50 | -8.615850e-47 |
| Msa0002760 | Msa0823760 | 0.808727 | 2.686328e-50 | -8.615850e-47 |
| Msa0002760 | Msa0910650 | 0.804104 | 2.534807e-49 | -8.615850e-47 |
| Msa0002760 | Msa0959970 | 0.821464 | 3.982225e-53 | -8.615850e-47 |
| Msa0002760 | Msa0967940 | 0.813526 | 2.448660e-51 | -8.615850e-47 |
| Msa0002760 | Msa0970120 | 0.834154 | 3.531722e-56 | -8.615850e-47 |
| Msa0002760 | Msa0985570 | 0.824431 | 8.103719e-54 | -8.615850e-47 |
| Msa0002760 | Msa1066930 | 0.803437 | 3.487443e-49 | -8.615850e-47 |
| Msa0002760 | Msa1095880 | 0.802258 | 6.108865e-49 | -8.615850e-47 |
| Msa0002760 | Msa1127530 | 0.808851 | 2.528130e-50 | -8.615850e-47 |
| Msa0002760 | Msa1175740 | 0.803939 | 2.744233e-49 | -8.615850e-47 |
| Msa0002760 | Msa1189630 | 0.826968 | 2.027581e-54 | -8.615850e-47 |
| Msa0002760 | Msa1190300 | 0.800066 | 1.715352e-48 | -8.615850e-47 |
| Msa0002760 | Msa1190670 | 0.811223 | 7.793472e-51 | -8.615850e-47 |
| Msa0002760 | Msa1196910 | 0.804654 | 1.947189e-49 | -8.615850e-47 |
| Msa0002760 | Msa1208630 | 0.803410 | 3.532138e-49 | -8.615850e-47 |
| Msa0002760 | Msa1214080 | 0.801965 | 7.020558e-49 | -8.615850e-47 |
| Msa0002760 | Msa1215800 | 0.998305 | 2.295324e-261 | -8.615850e-47 |
| Msa0002760 | Msa1222900 | 0.805157 | 1.528492e-49 | -8.615850e-47 |
| Msa0002760 | Msa1235880 | 0.810989 | 8.760412e-51 | -8.615850e-47 |
| Msa0002760 | Msa1236090 | 0.817914 | 2.575194e-52 | -8.615850e-47 |
| Msa0002760 | Msa1249740 | 0.801848 | 7.420411e-49 | -8.615850e-47 |
| Msa0002760 | Msa1263600 | 0.812344 | 4.443984e-51 | -8.615850e-47 |
| Msa0002760 | Msa1264670 | 0.811691 | 6.166955e-51 | -8.615850e-47 |
| Msa0002760 | Msa1300880 | 0.801162 | 1.025715e-48 | -8.615850e-47 |
| Msa0002760 | Msa1301620 | 0.851873 | 6.684405e-61 | -8.615850e-47 |
| Msa0002760 | Msa1315990 | 0.806572 | 7.708628e-50 | -8.615850e-47 |
| Msa0002760 | Msa1324940 | 0.811959 | 5.391830e-51 | -8.615850e-47 |
| Msa0002760 | Msa1331900 | 0.800091 | 1.695806e-48 | -8.615850e-47 |
| Msa0002760 | Msa1337950 | 0.803430 | 3.499598e-49 | -8.615850e-47 |
| Msa0002760 | Msa1349720 | 0.821757 | 3.407421e-53 | -8.615850e-47 |
| Msa0002760 | Msa1364650 | 0.804943 | 1.694364e-49 | -8.615850e-47 |
| Msa0002760 | Msa1373340 | 0.803352 | 3.632627e-49 | -8.615850e-47 |
| Msa0002760 | Msa1375120 | 0.805701 | 1.175878e-49 | -8.615850e-47 |
| Msa0002760 | Msa1411390 | 0.801928 | 7.144435e-49 | -8.615850e-47 |
| Msa0002760 | Msa1412750 | 0.810962 | 8.880360e-51 | -8.615850e-47 |
| Msa0002760 | Msa1426520 | 0.965887 | 3.435038e-125 | -8.615850e-47 |
| Msa0002760 | Msa1439880 | 0.802560 | 5.293653e-49 | -8.615850e-47 |
| Msa0002760 | Msa1444750 | 0.832693 | 8.174274e-56 | -8.615850e-47 |
| Msa0002760 | Msa1449320 | 0.804301 | 2.306426e-49 | -8.615850e-47 |
| Msa0002760 | Msa1455000 | 0.813268 | 2.790051e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0002760 | MtrunA17_Chr4g0065091 | 96.000 | 150 | 6 | 0 | 1 | 150 | 1 | 150 | 3.10e-95 | 271 |
| Msa0002760 | MtrunA17_Chr2g0304701 | 46.809 | 141 | 63 | 5 | 18 | 150 | 17 | 153 | 7.94e-30 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACAAAAGTTCCTTATATT+TGG | 0.128182 | 1_1:+4960655 | Msa0002760:three_prime_UTR |
| AGCTTAATTGAGTATAAAAT+TGG | 0.220335 | 1_1:-4959298 | None:intergenic |
| ATTATATTTATCCAAATATA+AGG | 0.261298 | 1_1:-4960666 | None:intergenic |
| GTGGCTCACACCTCAGTAAA+TGG | 0.325930 | 1_1:+4960459 | Msa0002760:CDS |
| TAGACTCAATTAATTGTGTA+TGG | 0.388334 | 1_1:-4960616 | None:intergenic |
| CTGCAGGAAATATAAAGAAT+AGG | 0.441652 | 1_1:+4960269 | Msa0002760:intron |
| CTAGAAATGTGAATGTGAAT+GGG | 0.472633 | 1_1:+4960487 | Msa0002760:CDS |
| GTGTGTGCAGGGATACGTTT+GGG | 0.472885 | 1_1:+4959549 | Msa0002760:intron |
| GTTATGTCTACAAGGTCCTC+AGG | 0.481183 | 1_1:-4960558 | None:intergenic |
| ACTAGAAATGTGAATGTGAA+TGG | 0.484726 | 1_1:+4960486 | Msa0002760:CDS |
| GCAGGGATACGTTTGGGAAA+AGG | 0.491954 | 1_1:+4959555 | Msa0002760:intron |
| TGTGTGTGCAGGGATACGTT+TGG | 0.497727 | 1_1:+4959548 | Msa0002760:intron |
| TACAACTAAATCCTTGTCAA+AGG | 0.499214 | 1_1:+4960315 | Msa0002760:CDS |
| CCATCTCAGTTATGTCTACA+AGG | 0.517334 | 1_1:-4960566 | None:intergenic |
| CAATTAAGCTCTTCCTTGCA+AGG | 0.550203 | 1_1:+4959311 | Msa0002760:five_prime_UTR |
| CCTTGTAGACATAACTGAGA+TGG | 0.558484 | 1_1:+4960566 | Msa0002760:CDS |
| TTTAGTTGTAGAAATTGAAG+TGG | 0.566395 | 1_1:-4960302 | None:intergenic |
| TGTGAAGAACACTGAGGATG+TGG | 0.567568 | 1_1:+4960440 | Msa0002760:CDS |
| ATACACAATTAATTGAGTCT+AGG | 0.573043 | 1_1:+4960618 | Msa0002760:exon |
| AGAGAGACTGCTACACAAGA+AGG | 0.574354 | 1_1:-4959417 | None:intergenic |
| AGACTCAATTAATTGTGTAT+GGG | 0.578163 | 1_1:-4960615 | None:intergenic |
| AAGAAGTAACACTGATTCTG+AGG | 0.585024 | 1_1:+4959742 | Msa0002760:CDS |
| AGATGGATTATTCACCAGCT+AGG | 0.588549 | 1_1:+4960583 | Msa0002760:CDS |
| TCTAGTATTGCCATTTACTG+AGG | 0.596383 | 1_1:-4960469 | None:intergenic |
| TTATAAACCAACCTTTGACA+AGG | 0.606206 | 1_1:-4960326 | None:intergenic |
| TTATGTCTACAAGGTCCTCA+GGG | 0.619907 | 1_1:-4960557 | None:intergenic |
| TAGAAATGTGAATGTGAATG+GGG | 0.652177 | 1_1:+4960488 | Msa0002760:CDS |
| GAATGTGAATGGGGAAGCAA+AGG | 0.660105 | 1_1:+4960497 | Msa0002760:CDS |
| TACTTCTAATTATCTCCCTG+AGG | 0.676211 | 1_1:+4960542 | Msa0002760:CDS |
| ACAGAATGTGAAGAACACTG+AGG | 0.882326 | 1_1:+4960434 | Msa0002760:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTATATTATAAACCT+TGG | + | chr1_1:4960357-4960376 | Msa0002760:intron | 10.0% |
| !! | AATAAAGATGTAAAAAAAAA+GGG | - | chr1_1:4960388-4960407 | None:intergenic | 10.0% |
| !! | AAATAAAGATGTAAAAAAAA+AGG | - | chr1_1:4960389-4960408 | None:intergenic | 10.0% |
| !! | ATTATATTTATCCAAATATA+AGG | - | chr1_1:4960669-4960688 | None:intergenic | 10.0% |
| !! | ATAAATTATATTATAAACCT+TGG | + | chr1_1:4960357-4960376 | Msa0002760:intron | 10.0% |
| !! | AATAAAGATGTAAAAAAAAA+GGG | - | chr1_1:4960388-4960407 | None:intergenic | 10.0% |
| !! | AAATAAAGATGTAAAAAAAA+AGG | - | chr1_1:4960389-4960408 | None:intergenic | 10.0% |
| !! | ATTATATTTATCCAAATATA+AGG | - | chr1_1:4960669-4960688 | None:intergenic | 10.0% |
| !! | TAATTAAATTTCTTTCATGA+TGG | - | chr1_1:4960177-4960196 | None:intergenic | 15.0% |
| !! | ATCATGAAAGAAATTTAATT+AGG | + | chr1_1:4960176-4960195 | Msa0002760:intron | 15.0% |
| !! | TAATTAAATTTCTTTCATGA+TGG | - | chr1_1:4960177-4960196 | None:intergenic | 15.0% |
| !! | ATCATGAAAGAAATTTAATT+AGG | + | chr1_1:4960176-4960195 | Msa0002760:intron | 15.0% |
| !!! | AAATTGGAAATTTTTAAGAG+TGG | - | chr1_1:4959285-4959304 | None:intergenic | 20.0% |
| !! | AGCTTAATTGAGTATAAAAT+TGG | - | chr1_1:4959301-4959320 | None:intergenic | 20.0% |
| !!! | AGAAAATCACACATTTTATT+TGG | + | chr1_1:4959346-4959365 | Msa0002760:five_prime_UTR | 20.0% |
| !!! | TTTTAAAAAAATTAGGGTAG+TGG | + | chr1_1:4959947-4959966 | Msa0002760:intron | 20.0% |
| !! | TGGAAAATTATTATCTAAAG+TGG | + | chr1_1:4959967-4959986 | Msa0002760:intron | 20.0% |
| !! | TCAAATCTACAATTGTAAAA+TGG | - | chr1_1:4960002-4960021 | None:intergenic | 20.0% |
| !!! | AAATTGGAAATTTTTAAGAG+TGG | - | chr1_1:4959285-4959304 | None:intergenic | 20.0% |
| !! | AGCTTAATTGAGTATAAAAT+TGG | - | chr1_1:4959301-4959320 | None:intergenic | 20.0% |
| !!! | AGAAAATCACACATTTTATT+TGG | + | chr1_1:4959346-4959365 | Msa0002760:five_prime_UTR | 20.0% |
| !!! | TTTTAAAAAAATTAGGGTAG+TGG | + | chr1_1:4959947-4959966 | Msa0002760:intron | 20.0% |
| !! | TGGAAAATTATTATCTAAAG+TGG | + | chr1_1:4959967-4959986 | Msa0002760:intron | 20.0% |
| !! | TCAAATCTACAATTGTAAAA+TGG | - | chr1_1:4960002-4960021 | None:intergenic | 20.0% |
| !! | AAAATGTGTGATTTTCTTCA+GGG | - | chr1_1:4959343-4959362 | None:intergenic | 25.0% |
| !! | TAAAATGTGTGATTTTCTTC+AGG | - | chr1_1:4959344-4959363 | None:intergenic | 25.0% |
| !! | ATTTACCTTGAGTTTTTGTA+AGG | - | chr1_1:4959461-4959480 | None:intergenic | 25.0% |
| ! | AAAAAAGGAAGAAAAACTTG+TGG | - | chr1_1:4959925-4959944 | None:intergenic | 25.0% |
| ! | ATATGTCCTTGTAATTTCAA+AGG | - | chr1_1:4960032-4960051 | None:intergenic | 25.0% |
| !! | TTGCATAGTCATAAGTTTTT+GGG | - | chr1_1:4960082-4960101 | None:intergenic | 25.0% |
| !! | TTTGCATAGTCATAAGTTTT+TGG | - | chr1_1:4960083-4960102 | None:intergenic | 25.0% |
| !!! | AAATGTTTTTATTTTGCTGC+AGG | + | chr1_1:4960253-4960272 | Msa0002760:intron | 25.0% |
| ! | TTTAGTTGTAGAAATTGAAG+TGG | - | chr1_1:4960305-4960324 | None:intergenic | 25.0% |
| ! | AAAAAAAAAGGGAAATTCCA+AGG | - | chr1_1:4960377-4960396 | None:intergenic | 25.0% |
| ! | AGACTCAATTAATTGTGTAT+GGG | - | chr1_1:4960618-4960637 | None:intergenic | 25.0% |
| ! | TAGACTCAATTAATTGTGTA+TGG | - | chr1_1:4960619-4960638 | None:intergenic | 25.0% |
| ! | ATACACAATTAATTGAGTCT+AGG | + | chr1_1:4960618-4960637 | Msa0002760:exon | 25.0% |
| ! | AGACAAAAGTTCCTTATATT+TGG | + | chr1_1:4960655-4960674 | Msa0002760:three_prime_UTR | 25.0% |
| !!! | AGAAATGCTGCAATTTTTTA+AGG | + | chr1_1:4960722-4960741 | Msa0002760:three_prime_UTR | 25.0% |
| !! | AAAATGTGTGATTTTCTTCA+GGG | - | chr1_1:4959343-4959362 | None:intergenic | 25.0% |
| !! | TAAAATGTGTGATTTTCTTC+AGG | - | chr1_1:4959344-4959363 | None:intergenic | 25.0% |
| !! | ATTTACCTTGAGTTTTTGTA+AGG | - | chr1_1:4959461-4959480 | None:intergenic | 25.0% |
| ! | AAAAAAGGAAGAAAAACTTG+TGG | - | chr1_1:4959925-4959944 | None:intergenic | 25.0% |
| ! | ATATGTCCTTGTAATTTCAA+AGG | - | chr1_1:4960032-4960051 | None:intergenic | 25.0% |
| !! | TTGCATAGTCATAAGTTTTT+GGG | - | chr1_1:4960082-4960101 | None:intergenic | 25.0% |
| !! | TTTGCATAGTCATAAGTTTT+TGG | - | chr1_1:4960083-4960102 | None:intergenic | 25.0% |
| !!! | AAATGTTTTTATTTTGCTGC+AGG | + | chr1_1:4960253-4960272 | Msa0002760:intron | 25.0% |
| ! | TTTAGTTGTAGAAATTGAAG+TGG | - | chr1_1:4960305-4960324 | None:intergenic | 25.0% |
| ! | AAAAAAAAAGGGAAATTCCA+AGG | - | chr1_1:4960377-4960396 | None:intergenic | 25.0% |
| ! | AGACTCAATTAATTGTGTAT+GGG | - | chr1_1:4960618-4960637 | None:intergenic | 25.0% |
| ! | TAGACTCAATTAATTGTGTA+TGG | - | chr1_1:4960619-4960638 | None:intergenic | 25.0% |
| ! | ATACACAATTAATTGAGTCT+AGG | + | chr1_1:4960618-4960637 | Msa0002760:exon | 25.0% |
| ! | AGACAAAAGTTCCTTATATT+TGG | + | chr1_1:4960655-4960674 | Msa0002760:three_prime_UTR | 25.0% |
| !!! | AGAAATGCTGCAATTTTTTA+AGG | + | chr1_1:4960722-4960741 | Msa0002760:three_prime_UTR | 25.0% |
| !! | CATTTTTGAAGGAAAATCTG+TGG | - | chr1_1:4959394-4959413 | None:intergenic | 30.0% |
| ! | CAGATTTTCCTTCAAAAATG+AGG | + | chr1_1:4959394-4959413 | Msa0002760:exon | 30.0% |
| GGAAGATTAGAAATGTAACA+AGG | - | chr1_1:4959523-4959542 | None:intergenic | 30.0% | |
| ! | TGCATGCTTTCACATTTTTA+TGG | + | chr1_1:4959659-4959678 | Msa0002760:intron | 30.0% |
| !!! | AGTGTTACTTCTTTTCAACA+AGG | - | chr1_1:4959735-4959754 | None:intergenic | 30.0% |
| TAGTAATCTTCATGAATCTG+TGG | - | chr1_1:4959857-4959876 | None:intergenic | 30.0% | |
| CAGATTCATGAAGATTACTA+TGG | + | chr1_1:4959857-4959876 | Msa0002760:intron | 30.0% | |
| TGTGGACTTGAAAAAACTAA+TGG | - | chr1_1:4959907-4959926 | None:intergenic | 30.0% | |
| TATGACTATGCAAAAATGCA+AGG | + | chr1_1:4960089-4960108 | Msa0002760:intron | 30.0% | |
| CTGCAGGAAATATAAAGAAT+AGG | + | chr1_1:4960269-4960288 | Msa0002760:intron | 30.0% | |
| TACAACTAAATCCTTGTCAA+AGG | + | chr1_1:4960315-4960334 | Msa0002760:CDS | 30.0% | |
| TTATAAACCAACCTTTGACA+AGG | - | chr1_1:4960329-4960348 | None:intergenic | 30.0% | |
| ACTAGAAATGTGAATGTGAA+TGG | + | chr1_1:4960486-4960505 | Msa0002760:CDS | 30.0% | |
| CTAGAAATGTGAATGTGAAT+GGG | + | chr1_1:4960487-4960506 | Msa0002760:CDS | 30.0% | |
| TAGAAATGTGAATGTGAATG+GGG | + | chr1_1:4960488-4960507 | Msa0002760:CDS | 30.0% | |
| !!! | CTGCAATTTTTTAAGGCTTA+GGG | + | chr1_1:4960729-4960748 | Msa0002760:three_prime_UTR | 30.0% |
| !! | CATTTTTGAAGGAAAATCTG+TGG | - | chr1_1:4959394-4959413 | None:intergenic | 30.0% |
| ! | CAGATTTTCCTTCAAAAATG+AGG | + | chr1_1:4959394-4959413 | Msa0002760:exon | 30.0% |
| GGAAGATTAGAAATGTAACA+AGG | - | chr1_1:4959523-4959542 | None:intergenic | 30.0% | |
| ! | TGCATGCTTTCACATTTTTA+TGG | + | chr1_1:4959659-4959678 | Msa0002760:intron | 30.0% |
| !!! | AGTGTTACTTCTTTTCAACA+AGG | - | chr1_1:4959735-4959754 | None:intergenic | 30.0% |
| TAGTAATCTTCATGAATCTG+TGG | - | chr1_1:4959857-4959876 | None:intergenic | 30.0% | |
| CAGATTCATGAAGATTACTA+TGG | + | chr1_1:4959857-4959876 | Msa0002760:intron | 30.0% | |
| TGTGGACTTGAAAAAACTAA+TGG | - | chr1_1:4959907-4959926 | None:intergenic | 30.0% | |
| TATGACTATGCAAAAATGCA+AGG | + | chr1_1:4960089-4960108 | Msa0002760:intron | 30.0% | |
| CTGCAGGAAATATAAAGAAT+AGG | + | chr1_1:4960269-4960288 | Msa0002760:intron | 30.0% | |
| TACAACTAAATCCTTGTCAA+AGG | + | chr1_1:4960315-4960334 | Msa0002760:CDS | 30.0% | |
| TTATAAACCAACCTTTGACA+AGG | - | chr1_1:4960329-4960348 | None:intergenic | 30.0% | |
| ACTAGAAATGTGAATGTGAA+TGG | + | chr1_1:4960486-4960505 | Msa0002760:CDS | 30.0% | |
| CTAGAAATGTGAATGTGAAT+GGG | + | chr1_1:4960487-4960506 | Msa0002760:CDS | 30.0% | |
| TAGAAATGTGAATGTGAATG+GGG | + | chr1_1:4960488-4960507 | Msa0002760:CDS | 30.0% | |
| !!! | CTGCAATTTTTTAAGGCTTA+GGG | + | chr1_1:4960729-4960748 | Msa0002760:three_prime_UTR | 30.0% |
| CTTCTCCTTACAAAAACTCA+AGG | + | chr1_1:4959453-4959472 | Msa0002760:CDS | 35.0% | |
| GAGCAACAAAAACAACATGT+AGG | + | chr1_1:4959591-4959610 | Msa0002760:intron | 35.0% | |
| !! | AAGAAGTAACACTGATTCTG+AGG | + | chr1_1:4959742-4959761 | Msa0002760:CDS | 35.0% |
| AATGACCAACAAAAATGCAC+AGG | + | chr1_1:4959779-4959798 | Msa0002760:CDS | 35.0% | |
| !! | CTTTAGAAGCTGTTTTCTTC+AGG | - | chr1_1:4959808-4959827 | None:intergenic | 35.0% |
| ! | TAACTGGTTGTGTGATTTTC+TGG | - | chr1_1:4959834-4959853 | None:intergenic | 35.0% |
| ! | ATTATCTAAAGTGGCGCTAA+TGG | + | chr1_1:4959976-4959995 | Msa0002760:intron | 35.0% |
| !! | CTTCGTCCTTTGAAATTACA+AGG | + | chr1_1:4960023-4960042 | Msa0002760:intron | 35.0% |
| GACAAAATTTGTCAGCTTAG+TGG | - | chr1_1:4960060-4960079 | None:intergenic | 35.0% | |
| !! | AAGGCTTTATTCTCTTCTCT+TGG | + | chr1_1:4960108-4960127 | Msa0002760:intron | 35.0% |
| TATTCTCTTCTCTTGGTTTC+TGG | + | chr1_1:4960115-4960134 | Msa0002760:intron | 35.0% | |
| ACTAAATCCTTGTCAAAGGT+TGG | + | chr1_1:4960319-4960338 | Msa0002760:intron | 35.0% | |
| ! | TCTAGTATTGCCATTTACTG+AGG | - | chr1_1:4960472-4960491 | None:intergenic | 35.0% |
| TACTTCTAATTATCTCCCTG+AGG | + | chr1_1:4960542-4960561 | Msa0002760:CDS | 35.0% | |
| !!! | GCTGCAATTTTTTAAGGCTT+AGG | + | chr1_1:4960728-4960747 | Msa0002760:three_prime_UTR | 35.0% |
| CTTCTCCTTACAAAAACTCA+AGG | + | chr1_1:4959453-4959472 | Msa0002760:CDS | 35.0% | |
| GAGCAACAAAAACAACATGT+AGG | + | chr1_1:4959591-4959610 | Msa0002760:intron | 35.0% | |
| !! | AAGAAGTAACACTGATTCTG+AGG | + | chr1_1:4959742-4959761 | Msa0002760:CDS | 35.0% |
| AATGACCAACAAAAATGCAC+AGG | + | chr1_1:4959779-4959798 | Msa0002760:CDS | 35.0% | |
| !! | CTTTAGAAGCTGTTTTCTTC+AGG | - | chr1_1:4959808-4959827 | None:intergenic | 35.0% |
| ! | TAACTGGTTGTGTGATTTTC+TGG | - | chr1_1:4959834-4959853 | None:intergenic | 35.0% |
| ! | ATTATCTAAAGTGGCGCTAA+TGG | + | chr1_1:4959976-4959995 | Msa0002760:intron | 35.0% |
| !! | CTTCGTCCTTTGAAATTACA+AGG | + | chr1_1:4960023-4960042 | Msa0002760:intron | 35.0% |
| GACAAAATTTGTCAGCTTAG+TGG | - | chr1_1:4960060-4960079 | None:intergenic | 35.0% | |
| !! | AAGGCTTTATTCTCTTCTCT+TGG | + | chr1_1:4960108-4960127 | Msa0002760:intron | 35.0% |
| TATTCTCTTCTCTTGGTTTC+TGG | + | chr1_1:4960115-4960134 | Msa0002760:intron | 35.0% | |
| ACTAAATCCTTGTCAAAGGT+TGG | + | chr1_1:4960319-4960338 | Msa0002760:intron | 35.0% | |
| ! | TCTAGTATTGCCATTTACTG+AGG | - | chr1_1:4960472-4960491 | None:intergenic | 35.0% |
| TACTTCTAATTATCTCCCTG+AGG | + | chr1_1:4960542-4960561 | Msa0002760:CDS | 35.0% | |
| !!! | GCTGCAATTTTTTAAGGCTT+AGG | + | chr1_1:4960728-4960747 | Msa0002760:three_prime_UTR | 35.0% |
| CAATTAAGCTCTTCCTTGCA+AGG | + | chr1_1:4959311-4959330 | Msa0002760:five_prime_UTR | 40.0% | |
| !! | CAAGAAGGCCTCATTTTTGA+AGG | - | chr1_1:4959405-4959424 | None:intergenic | 40.0% |
| !!! | TCTTCCTTTTTTGTGTGTGC+AGG | + | chr1_1:4959537-4959556 | Msa0002760:intron | 40.0% |
| !!! | CTTCCTTTTTTGTGTGTGCA+GGG | + | chr1_1:4959538-4959557 | Msa0002760:intron | 40.0% |
| TATCCCTGCACACACAAAAA+AGG | - | chr1_1:4959544-4959563 | None:intergenic | 40.0% | |
| !! | AAGTTCACTTTTCTGACTGC+AGG | + | chr1_1:4959694-4959713 | Msa0002760:intron | 40.0% |
| CTTCATGAATCTGTGGTAAC+TGG | - | chr1_1:4959850-4959869 | None:intergenic | 40.0% | |
| ACAGAATGTGAAGAACACTG+AGG | + | chr1_1:4960434-4960453 | Msa0002760:intron | 40.0% | |
| TTATGTCTACAAGGTCCTCA+GGG | - | chr1_1:4960560-4960579 | None:intergenic | 40.0% | |
| CCATCTCAGTTATGTCTACA+AGG | - | chr1_1:4960569-4960588 | None:intergenic | 40.0% | |
| CCTTGTAGACATAACTGAGA+TGG | + | chr1_1:4960566-4960585 | Msa0002760:CDS | 40.0% | |
| !! | AGATGGATTATTCACCAGCT+AGG | + | chr1_1:4960583-4960602 | Msa0002760:CDS | 40.0% |
| CAATTAAGCTCTTCCTTGCA+AGG | + | chr1_1:4959311-4959330 | Msa0002760:five_prime_UTR | 40.0% | |
| !! | CAAGAAGGCCTCATTTTTGA+AGG | - | chr1_1:4959405-4959424 | None:intergenic | 40.0% |
| !!! | TCTTCCTTTTTTGTGTGTGC+AGG | + | chr1_1:4959537-4959556 | Msa0002760:intron | 40.0% |
| !!! | CTTCCTTTTTTGTGTGTGCA+GGG | + | chr1_1:4959538-4959557 | Msa0002760:intron | 40.0% |
| TATCCCTGCACACACAAAAA+AGG | - | chr1_1:4959544-4959563 | None:intergenic | 40.0% | |
| !! | AAGTTCACTTTTCTGACTGC+AGG | + | chr1_1:4959694-4959713 | Msa0002760:intron | 40.0% |
| CTTCATGAATCTGTGGTAAC+TGG | - | chr1_1:4959850-4959869 | None:intergenic | 40.0% | |
| ACAGAATGTGAAGAACACTG+AGG | + | chr1_1:4960434-4960453 | Msa0002760:intron | 40.0% | |
| TTATGTCTACAAGGTCCTCA+GGG | - | chr1_1:4960560-4960579 | None:intergenic | 40.0% | |
| CCATCTCAGTTATGTCTACA+AGG | - | chr1_1:4960569-4960588 | None:intergenic | 40.0% | |
| CCTTGTAGACATAACTGAGA+TGG | + | chr1_1:4960566-4960585 | Msa0002760:CDS | 40.0% | |
| !! | AGATGGATTATTCACCAGCT+AGG | + | chr1_1:4960583-4960602 | Msa0002760:CDS | 40.0% |
| !! | TTCAGGGTTTTGTCCTTGCA+AGG | - | chr1_1:4959327-4959346 | None:intergenic | 45.0% |
| AGAGAGACTGCTACACAAGA+AGG | - | chr1_1:4959420-4959439 | None:intergenic | 45.0% | |
| ! | ACTTTTCTGACTGCAGGATG+AGG | + | chr1_1:4959700-4959719 | Msa0002760:intron | 45.0% |
| ! | GGCTACCTGTGCATTTTTGT+TGG | - | chr1_1:4959787-4959806 | None:intergenic | 45.0% |
| GACCTAGACGACATAGATCT+AGG | + | chr1_1:4959879-4959898 | Msa0002760:intron | 45.0% | |
| TGCCTAGATCTATGTCGTCT+AGG | - | chr1_1:4959884-4959903 | None:intergenic | 45.0% | |
| TGTGAAGAACACTGAGGATG+TGG | + | chr1_1:4960440-4960459 | Msa0002760:CDS | 45.0% | |
| GAATGTGAATGGGGAAGCAA+AGG | + | chr1_1:4960497-4960516 | Msa0002760:CDS | 45.0% | |
| GTTATGTCTACAAGGTCCTC+AGG | - | chr1_1:4960561-4960580 | None:intergenic | 45.0% | |
| !! | ATGGGAGACTTTTTCCTAGC+TGG | - | chr1_1:4960600-4960619 | None:intergenic | 45.0% |
| !! | TTCAGGGTTTTGTCCTTGCA+AGG | - | chr1_1:4959327-4959346 | None:intergenic | 45.0% |
| AGAGAGACTGCTACACAAGA+AGG | - | chr1_1:4959420-4959439 | None:intergenic | 45.0% | |
| ! | ACTTTTCTGACTGCAGGATG+AGG | + | chr1_1:4959700-4959719 | Msa0002760:intron | 45.0% |
| ! | GGCTACCTGTGCATTTTTGT+TGG | - | chr1_1:4959787-4959806 | None:intergenic | 45.0% |
| GACCTAGACGACATAGATCT+AGG | + | chr1_1:4959879-4959898 | Msa0002760:intron | 45.0% | |
| TGCCTAGATCTATGTCGTCT+AGG | - | chr1_1:4959884-4959903 | None:intergenic | 45.0% | |
| TGTGAAGAACACTGAGGATG+TGG | + | chr1_1:4960440-4960459 | Msa0002760:CDS | 45.0% | |
| GAATGTGAATGGGGAAGCAA+AGG | + | chr1_1:4960497-4960516 | Msa0002760:CDS | 45.0% | |
| GTTATGTCTACAAGGTCCTC+AGG | - | chr1_1:4960561-4960580 | None:intergenic | 45.0% | |
| !! | ATGGGAGACTTTTTCCTAGC+TGG | - | chr1_1:4960600-4960619 | None:intergenic | 45.0% |
| !!! | AATTTTTTTAAAAGAAAAAA+AGG | - | chr1_1:4959940-4959959 | None:intergenic | 5.0% |
| !!! | TTTTTTCTTTTAAAAAAATT+AGG | + | chr1_1:4959940-4959959 | Msa0002760:intron | 5.0% |
| !!! | TTTTTCTTTTAAAAAAATTA+GGG | + | chr1_1:4959941-4959960 | Msa0002760:intron | 5.0% |
| !!! | AATTTTTTTAAAAGAAAAAA+AGG | - | chr1_1:4959940-4959959 | None:intergenic | 5.0% |
| !!! | TTTTTTCTTTTAAAAAAATT+AGG | + | chr1_1:4959940-4959959 | Msa0002760:intron | 5.0% |
| !!! | TTTTTCTTTTAAAAAAATTA+GGG | + | chr1_1:4959941-4959960 | Msa0002760:intron | 5.0% |
| TGTGTGTGCAGGGATACGTT+TGG | + | chr1_1:4959548-4959567 | Msa0002760:intron | 50.0% | |
| GTGTGTGCAGGGATACGTTT+GGG | + | chr1_1:4959549-4959568 | Msa0002760:intron | 50.0% | |
| GCAGGGATACGTTTGGGAAA+AGG | + | chr1_1:4959555-4959574 | Msa0002760:intron | 50.0% | |
| GTGGCTCACACCTCAGTAAA+TGG | + | chr1_1:4960459-4960478 | Msa0002760:CDS | 50.0% | |
| TGTGTGTGCAGGGATACGTT+TGG | + | chr1_1:4959548-4959567 | Msa0002760:intron | 50.0% | |
| GTGTGTGCAGGGATACGTTT+GGG | + | chr1_1:4959549-4959568 | Msa0002760:intron | 50.0% | |
| GCAGGGATACGTTTGGGAAA+AGG | + | chr1_1:4959555-4959574 | Msa0002760:intron | 50.0% | |
| GTGGCTCACACCTCAGTAAA+TGG | + | chr1_1:4960459-4960478 | Msa0002760:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 4959282 | 4960849 | 4959282 | ID=Msa0002760;Name=Msa0002760 |
| chr1_1 | mRNA | 4959282 | 4960849 | 4959282 | ID=Msa0002760-mRNA-1;Parent=Msa0002760;Name=Msa0002760-mRNA-1;_AED=0.21;_eAED=0.21;_QI=129|1|1|1|1|1|5|220|150 |
| chr1_1 | exon | 4959282 | 4959474 | 4959282 | ID=Msa0002760-mRNA-1:exon:1516;Parent=Msa0002760-mRNA-1 |
| chr1_1 | exon | 4959559 | 4959608 | 4959559 | ID=Msa0002760-mRNA-1:exon:1517;Parent=Msa0002760-mRNA-1 |
| chr1_1 | exon | 4959716 | 4959800 | 4959716 | ID=Msa0002760-mRNA-1:exon:1518;Parent=Msa0002760-mRNA-1 |
| chr1_1 | exon | 4960275 | 4960336 | 4960275 | ID=Msa0002760-mRNA-1:exon:1519;Parent=Msa0002760-mRNA-1 |
| chr1_1 | exon | 4960438 | 4960849 | 4960438 | ID=Msa0002760-mRNA-1:exon:1520;Parent=Msa0002760-mRNA-1 |
| chr1_1 | five_prime_UTR | 4959282 | 4959410 | 4959282 | ID=Msa0002760-mRNA-1:five_prime_utr;Parent=Msa0002760-mRNA-1 |
| chr1_1 | CDS | 4959411 | 4959474 | 4959411 | ID=Msa0002760-mRNA-1:cds;Parent=Msa0002760-mRNA-1 |
| chr1_1 | CDS | 4959559 | 4959608 | 4959559 | ID=Msa0002760-mRNA-1:cds;Parent=Msa0002760-mRNA-1 |
| chr1_1 | CDS | 4959716 | 4959800 | 4959716 | ID=Msa0002760-mRNA-1:cds;Parent=Msa0002760-mRNA-1 |
| chr1_1 | CDS | 4960275 | 4960336 | 4960275 | ID=Msa0002760-mRNA-1:cds;Parent=Msa0002760-mRNA-1 |
| chr1_1 | CDS | 4960438 | 4960629 | 4960438 | ID=Msa0002760-mRNA-1:cds;Parent=Msa0002760-mRNA-1 |
| chr1_1 | three_prime_UTR | 4960630 | 4960849 | 4960630 | ID=Msa0002760-mRNA-1:three_prime_utr;Parent=Msa0002760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
