AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0149070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0149070 MtrunA17_Chr1g0148731 86.857 175 10 2 1 174 1 163 3.70e-88 255
Msa0149070 MtrunA17_Chr2g0331271 40.678 177 83 5 6 173 11 174 3.04e-34 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0149070 AT4G32590.1 75.000 132 21 1 43 174 54 173 4.56e-58 179
Msa0149070 AT4G32590.3 72.727 121 21 1 43 163 54 162 3.97e-49 157
Msa0149070 AT4G32590.4 77.528 89 20 0 43 131 54 142 6.31e-37 126
Msa0149070 AT3G16250.1 41.071 168 72 5 20 173 30 184 3.88e-32 114
Msa0149070 AT4G32590.5 80.597 67 13 0 43 109 54 120 2.30e-24 92.4
Msa0149070 AT4G32590.2 75.510 49 12 0 43 91 54 102 4.88e-21 83.6

Find 74 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTGCGCATTCTCTATTT+TGG 0.194013 1_4:+9593794 None:intergenic
GCGCAAAGCACATTGAATTA+AGG 0.264081 1_4:-9593780 Msa0149070:three_prime_UTR
TTTGGCTCTTGAATTAGATT+TGG 0.280607 1_4:+9593812 None:intergenic
GACCCATCACCCTCTGGTTT+TGG 0.288686 1_4:+9596634 None:intergenic
GAAAATAAATGGTTGGATTC+CGG 0.304867 1_4:+9596820 None:intergenic
ATGAACTCCAGCTCTATTTC+CGG 0.309865 1_4:+9596738 None:intergenic
CATTTGGTTACTATTCTTTA+CGG 0.319773 1_4:-9593877 Msa0149070:three_prime_UTR
CGCAAAGCACATTGAATTAA+GGG 0.319827 1_4:-9593779 Msa0149070:three_prime_UTR
TCCGGAGGAGAAGGAGATTC+AGG 0.327786 1_4:+9596756 None:intergenic
ATCATTACAACAATCATATA+AGG 0.333230 1_4:+9593903 None:intergenic
TCGCCGCCGGGGAAAATAAA+TGG 0.351768 1_4:+9596809 None:intergenic
AATGGTTGGATTCCGGTTAC+CGG 0.353946 1_4:+9596827 None:intergenic
AGAGGGTGATGGGTCGTTTC+CGG 0.362222 1_4:-9596626 Msa0149070:CDS
AAGTTGATGAACTGCGGTGG+AGG 0.365012 1_4:-9595619 Msa0149070:CDS
TGCAAGAAAAGTTAGAGTTT+AGG 0.368390 1_4:-9596931 Msa0149070:five_prime_UTR
CTGGCTTGTCAAACTATTGT+AGG 0.370146 1_4:-9594921 Msa0149070:CDS
GTAAACAGAAACCTCAATCT+TGG 0.374507 1_4:-9594947 Msa0149070:CDS
CAGAGGGCGCGAAGCAGAAA+AGG 0.385776 1_4:-9596895 Msa0149070:five_prime_UTR
TTACCGGCGGTGAGTGGAAC+TGG 0.390189 1_4:+9596843 None:intergenic
AAATAGAGCTGGAGTTCATT+GGG 0.393000 1_4:-9596734 Msa0149070:CDS
GAAATAGAGCTGGAGTTCAT+TGG 0.409789 1_4:-9596735 Msa0149070:CDS
TTCCACTCACCGCCGGTAAC+CGG 0.413919 1_4:-9596839 Msa0149070:CDS
CTTCGGTTGCAGATCATTGA+AGG 0.429966 1_4:-9595369 Msa0149070:intron
TCCAAGTCAAGTCAGTTAAC+TGG 0.435913 1_4:+9596956 None:intergenic
AACTGAGTTCGGTCGCCGCC+GGG 0.457166 1_4:+9596797 None:intergenic
CCAAGCCAAGTTGCACATCC+TGG 0.457293 1_4:-9594017 Msa0149070:three_prime_UTR
CAAGCCAGCCTCCAAGATTG+AGG 0.460021 1_4:+9594936 None:intergenic
GCCTGAATCTCCTTCTCCTC+CGG 0.472889 1_4:-9596757 Msa0149070:CDS
GCCACGAAACAAACTGAGTT+CGG 0.475849 1_4:+9596786 None:intergenic
GCCAGTTAACTGACTTGACT+TGG 0.483416 1_4:-9596957 Msa0149070:five_prime_UTR
CCAGGATGTGCAACTTGGCT+TGG 0.484687 1_4:+9594017 None:intergenic
GTATGTTACTTCTTCCATTG+AGG 0.486929 1_4:+9594039 None:intergenic
ACCGAACTCAGTTTGTTTCG+TGG 0.500054 1_4:-9596787 Msa0149070:CDS
AGCTCTATTTCCGGAGGAGA+AGG 0.500109 1_4:+9596747 None:intergenic
TTCTCCTCCGGAAATAGAGC+TGG 0.505143 1_4:-9596745 Msa0149070:CDS
AAACTGAGTTCGGTCGCCGC+CGG 0.506246 1_4:+9596796 None:intergenic
ATTGCTTTCACTTTATCCAC+CGG 0.506855 1_4:+9596607 None:intergenic
AAAATCCAGGATGTGCAACT+TGG 0.514003 1_4:+9594012 None:intergenic
CAGCCAAAACCAGAGGGTGA+TGG 0.518767 1_4:-9596637 Msa0149070:CDS
AGTTGATGAACTGCGGTGGA+GGG 0.519467 1_4:-9595618 Msa0149070:CDS
TTGTTGTAATGATTGTCATT+TGG 0.523276 1_4:-9593893 Msa0149070:three_prime_UTR
TTCCGGTTACCGGCGGTGAG+TGG 0.524356 1_4:+9596837 None:intergenic
GAAACCTCAATCTTGGAGGC+TGG 0.526252 1_4:-9594940 Msa0149070:CDS
ATGCAAACTATATAAAATCC+AGG 0.528301 1_4:+9593999 None:intergenic
TGAACTAAAATATCTTAAGA+AGG 0.529764 1_4:-9595316 Msa0149070:CDS
TTGATGAACTGCGGTGGAGG+GGG 0.531421 1_4:-9595616 Msa0149070:CDS
TTGTTCAAAGGATTCCTCAA+TGG 0.532551 1_4:-9594053 Msa0149070:CDS
GCGCGAAGCAGAAAAGGAAA+TGG 0.533002 1_4:-9596889 Msa0149070:exon
GTTGATGAACTGCGGTGGAG+GGG 0.538567 1_4:-9595617 Msa0149070:CDS
AACAGAAACCTCAATCTTGG+AGG 0.546688 1_4:-9594944 Msa0149070:CDS
AGCCAAAACCAGAGGGTGAT+GGG 0.553792 1_4:-9596636 Msa0149070:CDS
TGGCTTGTCAAACTATTGTA+GGG 0.560652 1_4:-9594920 Msa0149070:CDS
GTTGCAGATCATTGAAGGAA+AGG 0.566306 1_4:-9595364 Msa0149070:intron
GGAAACGACCCATCACCCTC+TGG 0.569559 1_4:+9596628 None:intergenic
CGCCGGGGAAAATAAATGGT+TGG 0.580484 1_4:+9596813 None:intergenic
TAAGCGGAGAGAAGCTGATG+AGG 0.586456 1_4:-9596585 Msa0149070:CDS
GGGTGATGGGTCGTTTCCGG+TGG 0.591158 1_4:-9596623 Msa0149070:CDS
GTAGGGAACAAAGAAAACTC+TGG 0.594992 1_4:-9594903 Msa0149070:CDS
ACTGAGTTCGGTCGCCGCCG+GGG 0.605244 1_4:+9596798 None:intergenic
ACACCAGTTCCACTCACCGC+CGG 0.614691 1_4:-9596846 Msa0149070:CDS
CTGCGGAACTTGCATAGTCG+AGG 0.615080 1_4:-9595590 Msa0149070:intron
GAACAAAGAAAACTCTGGCA+AGG 0.616661 1_4:-9594898 Msa0149070:intron
AGGAACACACACACAACAGA+GGG 0.629974 1_4:-9596911 Msa0149070:five_prime_UTR
GGGAAGTTGATGAACTGCGG+TGG 0.636301 1_4:-9595622 Msa0149070:CDS
TTGATTGCAGCCAAAACCAG+AGG 0.640341 1_4:-9596644 Msa0149070:intron
TGATTGCAGCCAAAACCAGA+GGG 0.640990 1_4:-9596643 Msa0149070:intron
AACTCCAGCTCTATTTCCGG+AGG 0.644295 1_4:+9596741 None:intergenic
GGTTGGATTCCGGTTACCGG+CGG 0.656174 1_4:+9596830 None:intergenic
GCTGATGAGGAGCATCATGT+CGG 0.664064 1_4:-9596572 Msa0149070:CDS
TAGGAACACACACACAACAG+AGG 0.696456 1_4:-9596912 Msa0149070:five_prime_UTR
GATAAAGTGAAAGCAATAAG+CGG 0.697309 1_4:-9596601 Msa0149070:CDS
AATAGAGCTGGAGTTCATTG+GGG 0.704244 1_4:-9596733 Msa0149070:intron
CAGGGGAAGTTGATGAACTG+CGG 0.716036 1_4:-9595625 Msa0149070:CDS
TGGTAGGATACATACATACG+TGG 0.737259 1_4:+9596528 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTCTTCTATAAAAAAA+AGG - chr1_4:9594652-9594671 Msa0149070:intron 10.0%
!!! TTTTATATCTTCTAAAAAAA+TGG + chr1_4:9594997-9595016 None:intergenic 10.0%
!!! ATTTTTTTAGAAGATATAAA+AGG - chr1_4:9594996-9595015 Msa0149070:intron 10.0%
!!! GAATAATTTTAGATATTTTT+TGG - chr1_4:9595273-9595292 Msa0149070:intron 10.0%
!!! TTGTTTTATAGTTTTTGATA+TGG - chr1_4:9594525-9594544 Msa0149070:intron 15.0%
!! TCTAATAATAACCATAAAAA+TGG + chr1_4:9595191-9595210 None:intergenic 15.0%
!! ATTAGTTAATTTCAAAATCT+TGG + chr1_4:9595732-9595751 None:intergenic 15.0%
!! ATATATTATACTTTCTATGA+TGG - chr1_4:9596630-9596649 Msa0149070:CDS 15.0%
!! TATATTATACTTTCTATGAT+GGG - chr1_4:9596631-9596650 Msa0149070:CDS 15.0%
!!! AAAAAAAGTACATGTAATGT+TGG + chr1_4:9594245-9594264 None:intergenic 20.0%
!! TTTACTATGAATGTTAGTAA+GGG + chr1_4:9594591-9594610 None:intergenic 20.0%
!!! TTTTACTATGAATGTTAGTA+AGG + chr1_4:9594592-9594611 None:intergenic 20.0%
!! TCAATTAATAACAATGAGTT+GGG + chr1_4:9594632-9594651 None:intergenic 20.0%
!! TTCAATTAATAACAATGAGT+TGG + chr1_4:9594633-9594652 None:intergenic 20.0%
!! TTTAAATATGAACGTTACAT+TGG - chr1_4:9594761-9594780 Msa0149070:intron 20.0%
!! GATTCTTCTTACTAATAATT+TGG - chr1_4:9594922-9594941 Msa0149070:CDS 20.0%
!!! TAATTTTAACTGTTACAACA+GGG - chr1_4:9595075-9595094 Msa0149070:intron 20.0%
!! TGAACTAAAATATCTTAAGA+AGG - chr1_4:9595402-9595421 Msa0149070:intron 20.0%
!!! ATTTTAACACATTGTTTTCA+AGG - chr1_4:9595511-9595530 Msa0149070:intron 20.0%
!! AACAACTTTCAGTATATATA+TGG - chr1_4:9596284-9596303 Msa0149070:intron 20.0%
!! TTATGAAACTTGATGAAATA+TGG + chr1_4:9596328-9596347 None:intergenic 20.0%
!! AAATAGACTTAATTCATAGA+AGG + chr1_4:9596409-9596428 None:intergenic 20.0%
!! TTAATTATCATATCATCCAA+AGG + chr1_4:9596438-9596457 None:intergenic 20.0%
!! ATGATATGATAATTAAAGCA+TGG - chr1_4:9596442-9596461 Msa0149070:intron 20.0%
!!! ATTCTAAAATTAATCAAGAC+TGG - chr1_4:9596575-9596594 Msa0149070:CDS 20.0%
!! ATCATTACAACAATCATATA+AGG + chr1_4:9596818-9596837 None:intergenic 20.0%
! GCATTGAGATATAATTTCTT+TGG - chr1_4:9594475-9594494 Msa0149070:intron 25.0%
! ACTAAAGAGTTCATTAAAGA+TGG - chr1_4:9594860-9594879 Msa0149070:intron 25.0%
!! TAGGTTTTCAGATTAATCAT+CGG - chr1_4:9594888-9594907 Msa0149070:intron 25.0%
!! TCTAAAAAAATGGATCCTTT+TGG + chr1_4:9594987-9595006 None:intergenic 25.0%
!!! CTAATTTTAACTGTTACAAC+AGG - chr1_4:9595074-9595093 Msa0149070:intron 25.0%
!!! AATTTTAACTGTTACAACAG+GGG - chr1_4:9595076-9595095 Msa0149070:intron 25.0%
!!! ACTAACATGATCCATTTTTA+TGG - chr1_4:9595177-9595196 Msa0149070:intron 25.0%
!! GCTAAGCATTTTACTATTTT+CGG + chr1_4:9595476-9595495 None:intergenic 25.0%
! TAAAATGCTTAGCACATTAT+TGG - chr1_4:9595483-9595502 Msa0149070:intron 25.0%
! GGTGAATACTTATATCAAAT+AGG + chr1_4:9595617-9595636 None:intergenic 25.0%
! AGGTTAAAAGAGTTGAAAAA+CGG + chr1_4:9595638-9595657 None:intergenic 25.0%
!!! TTAACTAATGTTTTGAGCTT+TGG - chr1_4:9595743-9595762 Msa0149070:intron 25.0%
!! TCAACTAAGAACAAATTTTG+AGG - chr1_4:9596064-9596083 Msa0149070:intron 25.0%
!! CAACTAAGAACAAATTTTGA+GGG - chr1_4:9596065-9596084 Msa0149070:intron 25.0%
! AGAACATTGAAACTAGAATA+AGG - chr1_4:9596147-9596166 Msa0149070:intron 25.0%
!! AAACTTAGTAAAAAGTGTAC+CGG + chr1_4:9596237-9596256 None:intergenic 25.0%
!!! ACTTTTTACTAAGTTTGTTC+CGG - chr1_4:9596241-9596260 Msa0149070:intron 25.0%
! ATTAAGTACTATAGTGCTAA+TGG - chr1_4:9596603-9596622 Msa0149070:CDS 25.0%
! ATGCAAACTATATAAAATCC+AGG + chr1_4:9596722-9596741 None:intergenic 25.0%
! TTGTTGTAATGATTGTCATT+TGG - chr1_4:9596825-9596844 Msa0149070:CDS 25.0%
! CATTTGGTTACTATTCTTTA+CGG - chr1_4:9596841-9596860 Msa0149070:CDS 25.0%
! CAAAAATGGCTTATATTACA+GGG + chr1_4:9596982-9597001 None:intergenic 25.0%
TGCAAGAAAAGTTAGAGTTT+AGG - chr1_4:9593787-9593806 Msa0149070:three_prime_UTR 30.0%
GAAAATAAATGGTTGGATTC+CGG + chr1_4:9593901-9593920 None:intergenic 30.0%
GATAAAGTGAAAGCAATAAG+CGG - chr1_4:9594117-9594136 Msa0149070:intron 30.0%
! AAAAGTACATGTAATGTTGG+TGG + chr1_4:9594242-9594261 None:intergenic 30.0%
TATCTGAGTTCAGTTTCATT+CGG + chr1_4:9594788-9594807 None:intergenic 30.0%
GAACTCAGATATCTTAATCA+AGG - chr1_4:9594797-9594816 Msa0149070:intron 30.0%
!!! ATCCTTTTGGTTCTTGATAT+TGG + chr1_4:9594974-9594993 None:intergenic 30.0%
AATCATGTAGTAGCAATTAG+AGG + chr1_4:9595329-9595348 None:intergenic 30.0%
ATTGCTACTACATGATTCTT+CGG - chr1_4:9595332-9595351 Msa0149070:CDS 30.0%
! GAAAGGAACTTTTGAATGAA+AGG - chr1_4:9595371-9595390 Msa0149070:intron 30.0%
GATATTATAACACTTCCCAT+TGG + chr1_4:9595545-9595564 None:intergenic 30.0%
!! TTTCAACTGATTTGAGCTAA+AGG + chr1_4:9595658-9595677 None:intergenic 30.0%
ATTGTTCCTTTCATATTGTG+AGG - chr1_4:9595696-9595715 Msa0149070:intron 30.0%
TTGTTCCTTTCATATTGTGA+GGG - chr1_4:9595697-9595716 Msa0149070:intron 30.0%
CTTATATGTAACTATCACTC+CGG + chr1_4:9595940-9595959 None:intergenic 30.0%
CTCACATTATTGAGAATTGA+AGG - chr1_4:9595992-9596011 Msa0149070:intron 30.0%
TGAAGGTAGTTTATATACAC+CGG - chr1_4:9596009-9596028 Msa0149070:intron 30.0%
AAGTCTATTTACTTGACCTT+TGG - chr1_4:9596419-9596438 Msa0149070:intron 30.0%
!!! TAGTCACTTTTGTTTGCATT+AGG + chr1_4:9596502-9596521 None:intergenic 30.0%
AATGCAAACAAAAGTGACTA+CGG - chr1_4:9596502-9596521 Msa0149070:intron 30.0%
TTGAAGAGAACCATACAAAT+TGG + chr1_4:9596536-9596555 None:intergenic 30.0%
!! TTTGGCTCTTGAATTAGATT+TGG + chr1_4:9596909-9596928 None:intergenic 30.0%
CCAAAAATGGCTTATATTAC+AGG + chr1_4:9596983-9597002 None:intergenic 30.0%
!! CCTGTAATATAAGCCATTTT+TGG - chr1_4:9596980-9596999 Msa0149070:five_prime_UTR 30.0%
!! ATCCAACCATTTATTTTCCC+CGG - chr1_4:9593903-9593922 Msa0149070:three_prime_UTR 35.0%
AAATAGAGCTGGAGTTCATT+GGG - chr1_4:9593984-9594003 Msa0149070:three_prime_UTR 35.0%
ATTGCTTTCACTTTATCCAC+CGG + chr1_4:9594114-9594133 None:intergenic 35.0%
ATTGGAATTAAGCATGTGGT+AGG + chr1_4:9594209-9594228 None:intergenic 35.0%
GTTGATTGGAATTAAGCATG+TGG + chr1_4:9594213-9594232 None:intergenic 35.0%
!! CATGTAATGTTGGTGGATTA+TGG + chr1_4:9594235-9594254 None:intergenic 35.0%
! GGTCTAAGATTAGATTCTCA+TGG - chr1_4:9594818-9594837 Msa0149070:intron 35.0%
TTCTCATGGATGAGAAAATG+TGG - chr1_4:9594832-9594851 Msa0149070:intron 35.0%
ATGGATGAGAAAATGTGGTT+GGG - chr1_4:9594837-9594856 Msa0149070:intron 35.0%
TTCATTAAAGATGGTCAGCT+AGG - chr1_4:9594869-9594888 Msa0149070:intron 35.0%
TGCCAATATCAAGAACCAAA+AGG - chr1_4:9594969-9594988 Msa0149070:intron 35.0%
TCAGTATGACTATGTTCTCT+TGG - chr1_4:9595223-9595242 Msa0149070:intron 35.0%
!! ACATTGTTTTCAAGGTTCCT+AGG - chr1_4:9595519-9595538 Msa0149070:intron 35.0%
GTAAACAGAAACCTCAATCT+TGG - chr1_4:9595771-9595790 Msa0149070:intron 35.0%
! TGGCTTGTCAAACTATTGTA+GGG - chr1_4:9595798-9595817 Msa0149070:intron 35.0%
GCTATATCTCATGTTTAGTG+TGG - chr1_4:9595903-9595922 Msa0149070:intron 35.0%
GGCTTACACAATACTCAATA+CGG - chr1_4:9596086-9596105 Msa0149070:intron 35.0%
GGAATCTTCTCCAATTTGTA+TGG - chr1_4:9596523-9596542 Msa0149070:intron 35.0%
!!! ACTTTCTATGATGGGCTTTT+AGG - chr1_4:9596639-9596658 Msa0149070:intron 35.0%
!!! GCTTTTAGGTTGTTGTTCAA+AGG - chr1_4:9596653-9596672 Msa0149070:intron 35.0%
TTGTTCAAAGGATTCCTCAA+TGG - chr1_4:9596665-9596684 Msa0149070:intron 35.0%
! GTATGTTACTTCTTCCATTG+AGG + chr1_4:9596682-9596701 None:intergenic 35.0%
CGCAAAGCACATTGAATTAA+GGG - chr1_4:9596939-9596958 Msa0149070:five_prime_UTR 35.0%
TCCAAGTCAAGTCAGTTAAC+TGG + chr1_4:9593765-9593784 None:intergenic 40.0%
ATGAACTCCAGCTCTATTTC+CGG + chr1_4:9593983-9594002 None:intergenic 40.0%
GAAATAGAGCTGGAGTTCAT+TGG - chr1_4:9593983-9594002 Msa0149070:three_prime_UTR 40.0%
AATAGAGCTGGAGTTCATTG+GGG - chr1_4:9593985-9594004 Msa0149070:three_prime_UTR 40.0%
TGGTAGGATACATACATACG+TGG + chr1_4:9594193-9594212 None:intergenic 40.0%
!! GTTGGTGGATTATGGTTGAT+TGG + chr1_4:9594227-9594246 None:intergenic 40.0%
GCAGAAACTAACGAATTGGT+AGG + chr1_4:9594344-9594363 None:intergenic 40.0%
GACTGCAGAAACTAACGAAT+TGG + chr1_4:9594348-9594367 None:intergenic 40.0%
CATGGATGAGAAAATGTGGT+TGG - chr1_4:9594836-9594855 Msa0149070:intron 40.0%
GTTGCAGATCATTGAAGGAA+AGG - chr1_4:9595354-9595373 Msa0149070:CDS 40.0%
TTCCTTTCATATTGTGAGGG+TGG - chr1_4:9595700-9595719 Msa0149070:intron 40.0%
TACCACCCTCACAATATGAA+AGG + chr1_4:9595705-9595724 None:intergenic 40.0%
AACAGAAACCTCAATCTTGG+AGG - chr1_4:9595774-9595793 Msa0149070:intron 40.0%
! CTGGCTTGTCAAACTATTGT+AGG - chr1_4:9595797-9595816 Msa0149070:intron 40.0%
GTAGGGAACAAAGAAAACTC+TGG - chr1_4:9595815-9595834 Msa0149070:intron 40.0%
GAACAAAGAAAACTCTGGCA+AGG - chr1_4:9595820-9595839 Msa0149070:intron 40.0%
CATGTTTAGTGTGGCAAATG+TGG - chr1_4:9595912-9595931 Msa0149070:intron 40.0%
! GAGTAATGAGTTGAAGAGAC+CGG + chr1_4:9596031-9596050 None:intergenic 40.0%
CGGACAATACCTTAGAAAAG+TGG - chr1_4:9596106-9596125 Msa0149070:intron 40.0%
!! TCTGAGACACCACTTTTCTA+AGG + chr1_4:9596118-9596137 None:intergenic 40.0%
AAAGTGGTGTCTCAGATTTG+AGG - chr1_4:9596122-9596141 Msa0149070:intron 40.0%
! TTTTAGCCCCATAGGCTAAA+GGG - chr1_4:9596200-9596219 Msa0149070:intron 40.0%
! TTACTAAGTTTGTTCCGGTG+TGG - chr1_4:9596246-9596265 Msa0149070:intron 40.0%
AAAATCCAGGATGTGCAACT+TGG + chr1_4:9596709-9596728 None:intergenic 40.0%
! GCTTTGCGCATTCTCTATTT+TGG + chr1_4:9596927-9596946 None:intergenic 40.0%
GCGCAAAGCACATTGAATTA+AGG - chr1_4:9596938-9596957 Msa0149070:five_prime_UTR 40.0%
TAGGGGGTGAAAACCAAAAA+TGG + chr1_4:9596996-9597015 None:intergenic 40.0%
!! GCCAGTTAACTGACTTGACT+TGG - chr1_4:9593761-9593780 Msa0149070:three_prime_UTR 45.0%
TAGGAACACACACACAACAG+AGG - chr1_4:9593806-9593825 Msa0149070:three_prime_UTR 45.0%
AGGAACACACACACAACAGA+GGG - chr1_4:9593807-9593826 Msa0149070:three_prime_UTR 45.0%
AATGGTTGGATTCCGGTTAC+CGG + chr1_4:9593894-9593913 None:intergenic 45.0%
!! CAACCATTTATTTTCCCCGG+CGG - chr1_4:9593906-9593925 Msa0149070:three_prime_UTR 45.0%
! ACCGAACTCAGTTTGTTTCG+TGG - chr1_4:9593931-9593950 Msa0149070:three_prime_UTR 45.0%
GCCACGAAACAAACTGAGTT+CGG + chr1_4:9593935-9593954 None:intergenic 45.0%
TTGATTGCAGCCAAAACCAG+AGG - chr1_4:9594074-9594093 Msa0149070:intron 45.0%
TGATTGCAGCCAAAACCAGA+GGG - chr1_4:9594075-9594094 Msa0149070:intron 45.0%
CTTCGGTTGCAGATCATTGA+AGG - chr1_4:9595349-9595368 Msa0149070:CDS 45.0%
TTTCAAGGTTCCTAGGCCAA+TGG - chr1_4:9595526-9595545 Msa0149070:intron 45.0%
TTCAAGGTTCCTAGGCCAAT+GGG - chr1_4:9595527-9595546 Msa0149070:intron 45.0%
! ATAACACTTCCCATTGGCCT+AGG + chr1_4:9595539-9595558 None:intergenic 45.0%
CTTTAGCCTATGGGGCTAAA+AGG + chr1_4:9596201-9596220 None:intergenic 45.0%
! CTTTTAGCCCCATAGGCTAA+AGG - chr1_4:9596199-9596218 Msa0149070:intron 45.0%
ATAGCCTCCCTTTAGCCTAT+GGG + chr1_4:9596210-9596229 None:intergenic 45.0%
AATAGCCTCCCTTTAGCCTA+TGG + chr1_4:9596211-9596230 None:intergenic 45.0%
CTAAAGGGAGGCTATTGTTC+CGG - chr1_4:9596215-9596234 Msa0149070:intron 45.0%
GCGCGAAGCAGAAAAGGAAA+TGG - chr1_4:9593829-9593848 Msa0149070:three_prime_UTR 50.0%
CGCCGGGGAAAATAAATGGT+TGG + chr1_4:9593908-9593927 None:intergenic 50.0%
AGCTCTATTTCCGGAGGAGA+AGG + chr1_4:9593974-9593993 None:intergenic 50.0%
TTCTCCTCCGGAAATAGAGC+TGG - chr1_4:9593973-9593992 Msa0149070:three_prime_UTR 50.0%
AACTCCAGCTCTATTTCCGG+AGG + chr1_4:9593980-9593999 None:intergenic 50.0%
AGCCAAAACCAGAGGGTGAT+GGG - chr1_4:9594082-9594101 Msa0149070:intron 50.0%
TAAGCGGAGAGAAGCTGATG+AGG - chr1_4:9594133-9594152 Msa0149070:intron 50.0%
!! GCTGATGAGGAGCATCATGT+CGG - chr1_4:9594146-9594165 Msa0149070:intron 50.0%
!! CAGGGGAAGTTGATGAACTG+CGG - chr1_4:9595093-9595112 Msa0149070:intron 50.0%
!! AAGTTGATGAACTGCGGTGG+AGG - chr1_4:9595099-9595118 Msa0149070:intron 50.0%
!! AGTTGATGAACTGCGGTGGA+GGG - chr1_4:9595100-9595119 Msa0149070:intron 50.0%
GAAACCTCAATCTTGGAGGC+TGG - chr1_4:9595778-9595797 Msa0149070:intron 50.0%
TAGTGTGGCAAATGTGGTGC+CGG - chr1_4:9595918-9595937 Msa0149070:intron 50.0%
! GATAGGCCTTTTAGCCCCAT+AGG - chr1_4:9596192-9596211 Msa0149070:intron 50.0%
TAGCCTCCCTTTAGCCTATG+GGG + chr1_4:9596209-9596228 None:intergenic 50.0%
TCGCCGCCGGGGAAAATAAA+TGG + chr1_4:9593912-9593931 None:intergenic 55.0%
GCCTGAATCTCCTTCTCCTC+CGG - chr1_4:9593961-9593980 Msa0149070:three_prime_UTR 55.0%
TCCGGAGGAGAAGGAGATTC+AGG + chr1_4:9593965-9593984 None:intergenic 55.0%
CAGCCAAAACCAGAGGGTGA+TGG - chr1_4:9594081-9594100 Msa0149070:intron 55.0%
!! GACCCATCACCCTCTGGTTT+TGG + chr1_4:9594087-9594106 None:intergenic 55.0%
!! AGAGGGTGATGGGTCGTTTC+CGG - chr1_4:9594092-9594111 Msa0149070:intron 55.0%
!! GGGAAGTTGATGAACTGCGG+TGG - chr1_4:9595096-9595115 Msa0149070:intron 55.0%
! GTTGATGAACTGCGGTGGAG+GGG - chr1_4:9595101-9595120 Msa0149070:intron 55.0%
TTGATGAACTGCGGTGGAGG+GGG - chr1_4:9595102-9595121 Msa0149070:intron 55.0%
CTGCGGAACTTGCATAGTCG+AGG - chr1_4:9595128-9595147 Msa0149070:intron 55.0%
CAAGCCAGCCTCCAAGATTG+AGG + chr1_4:9595785-9595804 None:intergenic 55.0%
AGGACATAAGCCACACGCGA+TGG - chr1_4:9596167-9596186 Msa0149070:intron 55.0%
TAGCCCCATAGGCTAAAGGG+AGG - chr1_4:9596203-9596222 Msa0149070:intron 55.0%
TGAACTCGAGTCTGCCACAC+CGG + chr1_4:9596263-9596282 None:intergenic 55.0%
CCAGGATGTGCAACTTGGCT+TGG + chr1_4:9596704-9596723 None:intergenic 55.0%
CCAAGCCAAGTTGCACATCC+TGG - chr1_4:9596701-9596720 Msa0149070:intron 55.0%
! CAGAGGGCGCGAAGCAGAAA+AGG - chr1_4:9593823-9593842 Msa0149070:three_prime_UTR 60.0%
ACACCAGTTCCACTCACCGC+CGG - chr1_4:9593872-9593891 Msa0149070:three_prime_UTR 60.0%
TTACCGGCGGTGAGTGGAAC+TGG + chr1_4:9593878-9593897 None:intergenic 60.0%
TTCCACTCACCGCCGGTAAC+CGG - chr1_4:9593879-9593898 Msa0149070:three_prime_UTR 60.0%
GGTTGGATTCCGGTTACCGG+CGG + chr1_4:9593891-9593910 None:intergenic 60.0%
AAACTGAGTTCGGTCGCCGC+CGG + chr1_4:9593925-9593944 None:intergenic 60.0%
GGAAACGACCCATCACCCTC+TGG + chr1_4:9594093-9594112 None:intergenic 60.0%
AGCCACACGCGATGGTCGAT+AGG - chr1_4:9596175-9596194 Msa0149070:intron 60.0%
TTCCGGTTACCGGCGGTGAG+TGG + chr1_4:9593884-9593903 None:intergenic 65.0%
AACTGAGTTCGGTCGCCGCC+GGG + chr1_4:9593924-9593943 None:intergenic 65.0%
!! GGGTGATGGGTCGTTTCCGG+TGG - chr1_4:9594095-9594114 Msa0149070:intron 65.0%
GGCCTATCGACCATCGCGTG+TGG + chr1_4:9596180-9596199 None:intergenic 65.0%
ACTGAGTTCGGTCGCCGCCG+GGG + chr1_4:9593923-9593942 None:intergenic 70.0%
TGCGGTGGAGGGGGTAGCTG+CGG - chr1_4:9595111-9595130 Msa0149070:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 9593715 9597025 9593715 ID=Msa0149070;Name=Msa0149070
chr1_4 mRNA 9593715 9597025 9593715 ID=Msa0149070-mRNA-1;Parent=Msa0149070;Name=Msa0149070-mRNA-1;_AED=0.14;_eAED=0.14;_QI=133|0.8|0.66|1|0.6|0.66|6|329|174
chr1_4 exon 9593715 9594079 9593715 ID=Msa0149070-mRNA-1:exon:4073;Parent=Msa0149070-mRNA-1
chr1_4 exon 9594899 9594980 9594899 ID=Msa0149070-mRNA-1:exon:4072;Parent=Msa0149070-mRNA-1
chr1_4 exon 9595300 9595379 9595300 ID=Msa0149070-mRNA-1:exon:4071;Parent=Msa0149070-mRNA-1
chr1_4 exon 9595591 9595644 9595591 ID=Msa0149070-mRNA-1:exon:4070;Parent=Msa0149070-mRNA-1
chr1_4 exon 9596543 9596656 9596543 ID=Msa0149070-mRNA-1:exon:4069;Parent=Msa0149070-mRNA-1
chr1_4 exon 9596734 9597025 9596734 ID=Msa0149070-mRNA-1:exon:4068;Parent=Msa0149070-mRNA-1
chr1_4 five_prime_UTR 9596893 9597025 9596893 ID=Msa0149070-mRNA-1:five_prime_utr;Parent=Msa0149070-mRNA-1
chr1_4 CDS 9596734 9596892 9596734 ID=Msa0149070-mRNA-1:cds;Parent=Msa0149070-mRNA-1
chr1_4 CDS 9596543 9596656 9596543 ID=Msa0149070-mRNA-1:cds;Parent=Msa0149070-mRNA-1
chr1_4 CDS 9595591 9595644 9595591 ID=Msa0149070-mRNA-1:cds;Parent=Msa0149070-mRNA-1
chr1_4 CDS 9595300 9595379 9595300 ID=Msa0149070-mRNA-1:cds;Parent=Msa0149070-mRNA-1
chr1_4 CDS 9594899 9594980 9594899 ID=Msa0149070-mRNA-1:cds;Parent=Msa0149070-mRNA-1
chr1_4 CDS 9594044 9594079 9594044 ID=Msa0149070-mRNA-1:cds;Parent=Msa0149070-mRNA-1
chr1_4 three_prime_UTR 9593715 9594043 9593715 ID=Msa0149070-mRNA-1:three_prime_utr;Parent=Msa0149070-mRNA-1
Gene Sequence

>Msa0149070

ATGGCTTCTATGAACAATATATTCACACCAGTTCCACTCACCGCCGGTAACCGGAATCCAACCATTTATTTTCCCCGGCGGCGACCGAACTCAGTTTGTTTCGTGGCAAATTCGCCTGAATCTCCTTCTCCTCCGGAAATAGAGCTGGAGTTCATTGGGCCAAAACCAGAGGGTGATGGGTCGTTTCCGGTGGATAAAGTGAAAGCAATAAGCGGAGAGAAGCTGATGAGGAGCATCATGTCGGATAACAAGATTGAGCTTTATGCCACGTATGGGAAGTTGATGAACTGCGGTGGAGGGGGTAGCTGCGGAACTTGCATAGTCGAGATCATTGAAGGAAAGGAACTTTTGAATGAAAGGACAAATACTGAACTAAAATATCTTAAGAAGGCATGTTCTCTAACTTTCTTTGGCATTTGTAAACAGAAACCTCAATCTTGGAGGCTGGCTTGTCAAACTATTGTAGGGAACAAAGAAAACTCTGGCAAGGTTGTTGTTCAAAGGATTCCTCAATGGAAGAAGTAA

Protein sequence

>Msa0149070

MASMNNIFTPVPLTAGNRNPTIYFPRRRPNSVCFVANSPESPSPPEIELEFIGPKPEGDGSFPVDKVKAISGEKLMRSIMSDNKIELYATYGKLMNCGGGGSCGTCIVEIIEGKELLNERTNTELKYLKKACSLTFFGICKQKPQSWRLACQTIVGNKENSGKVVVQRIPQWKK*