AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1090230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1090230 MtrunA17_Chr6g0463901 92.035 339 6 2 1 318 1 339 0.0 636
Msa1090230 MtrunA17_Chr2g0278581 78.507 335 51 2 1 314 1 335 0.0 542
Msa1090230 MtrunA17_Chr7g0241071 46.784 342 143 5 11 314 71 411 1.82e-100 301
Msa1090230 MtrunA17_Chr4g0049821 37.621 311 150 7 32 311 87 384 4.98e-62 202
Msa1090230 MtrunA17_Chr3g0113101 27.451 255 164 7 67 306 116 364 4.97e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1090230 AT1G43670.1 80.236 339 46 2 1 318 1 339 0.0 561
Msa1090230 AT3G54050.2 47.059 340 143 5 11 314 79 417 2.66e-101 304
Msa1090230 AT3G54050.1 47.059 340 143 5 11 314 79 417 2.66e-101 304
Msa1090230 AT5G64380.1 36.656 311 157 7 32 311 89 390 2.03e-61 201
Msa1090230 AT3G55800.1 28.185 259 157 8 67 306 123 371 7.39e-13 68.9

Find 112 sgRNAs with CRISPR-Local

Find 404 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGGTGGGTTCGATGTTT+TGG 0.164726 7_3:-4029585 None:intergenic
TAAAGTGTATGTTTAGAATT+TGG 0.166521 7_3:+4029702 Msa1090230:five_prime_UTR
TGTTATAGTTCTTTAATTAA+TGG 0.195083 7_3:+4036859 Msa1090230:three_prime_UTR
ATCATAGCTACCAAGAAATA+TGG 0.228525 7_3:-4036642 None:intergenic
TTGCTTAATAACATTGTTCT+TGG 0.232374 7_3:+4030114 Msa1090230:CDS
ACCACTGGAAGTGGTGTTAA+TGG 0.234751 7_3:+4033235 Msa1090230:CDS
GAATAAATCTTGCCTTTCTT+TGG 0.239412 7_3:-4034029 None:intergenic
CCTAACTCACCCTGACATTA+AGG 0.279021 7_3:+4033291 Msa1090230:CDS
GAAAGATCTCCCATATTTCT+TGG 0.282491 7_3:+4036632 Msa1090230:CDS
GCAAAGCTCATTGGACTTGC+AGG 0.289654 7_3:+4031465 Msa1090230:CDS
CTTCCCAATGTCCTTCTTGA+TGG 0.290934 7_3:+4035874 Msa1090230:CDS
ACATATATATCTAAAGAATT+TGG 0.301719 7_3:+4029909 Msa1090230:five_prime_UTR
TCAATAGTAACATGTATAAT+TGG 0.308144 7_3:-4036904 None:intergenic
CCTTAATGTCAGGGTGAGTT+AGG 0.309718 7_3:-4033291 None:intergenic
GTAAAATCTCCACGTGATTC+AGG 0.312460 7_3:-4030087 None:intergenic
ATGCATTACCCTTTCCTTGC+CGG 0.313636 7_3:-4035921 None:intergenic
CAAGCATTTATCCAATTGTT+AGG 0.326336 7_3:+4036749 Msa1090230:three_prime_UTR
AATAAATCTTGCCTTTCTTT+GGG 0.339648 7_3:-4034028 None:intergenic
CGATTGATTCATTCATTGAT+TGG 0.344065 7_3:+4029960 Msa1090230:five_prime_UTR
CGTACATAGTTGATTGGTTT+CGG 0.346980 7_3:+4029934 Msa1090230:five_prime_UTR
ATTCAACACAAAACGTGTTA+TGG 0.348871 7_3:-4030049 None:intergenic
CTTTAGTAAAACAATTGTAT+AGG 0.360299 7_3:-4029654 None:intergenic
GTTCATCGTACATTGCTATA+TGG 0.377460 7_3:+4035685 Msa1090230:CDS
AAAGAAAGGCAAGATTTATT+CGG 0.384048 7_3:+4034031 Msa1090230:CDS
TTCACTCTCGACCCTTCTCT+TGG 0.387036 7_3:+4033259 Msa1090230:CDS
CGGAGTATTACCTTAATGTC+AGG 0.406069 7_3:-4033301 None:intergenic
AGTAGGACCATCCCAGTTCT+TGG 0.413154 7_3:-4034069 None:intergenic
ACGAAGGGAACGCCAAGAAC+TGG 0.415047 7_3:+4034057 Msa1090230:CDS
TGCAGGAGAGACCAATGTTC+AGG 0.427688 7_3:+4031482 Msa1090230:CDS
CATCATCTATGATTGGTTCA+TGG 0.429120 7_3:-4033024 None:intergenic
TGCAGAACATCATCTATGAT+TGG 0.429779 7_3:-4033031 None:intergenic
ATGTTGGAGGAGCCGTCTAA+TGG 0.431159 7_3:-4032619 None:intergenic
TTGGTACGTACATAGTTGAT+TGG 0.433683 7_3:+4029928 Msa1090230:five_prime_UTR
GCACTTGTTAGCCTAACAAT+TGG 0.436975 7_3:-4036760 None:intergenic
TTTGTCAGCAGGGTACAAAA+AGG 0.440471 7_3:-4035713 None:intergenic
AAATATACATATACATGATA+AGG 0.445418 7_3:-4036806 None:intergenic
GCTGGTCTTGCAAAGCTCAT+TGG 0.453630 7_3:+4031456 Msa1090230:CDS
AATGTCCTTCTTGATGGAAC+AGG 0.459315 7_3:+4035880 Msa1090230:CDS
GACATGAATTGTTATATGTA+GGG 0.461657 7_3:-4029794 None:intergenic
TGTCAATATAATAGCTCCCT+AGG 0.470179 7_3:-4029822 None:intergenic
AGCCTTGCAGAACACCTCAT+TGG 0.474174 7_3:-4032094 None:intergenic
GGCTTTCACCGGCAAGGAAA+GGG 0.474657 7_3:+4035913 Msa1090230:CDS
ATATATCTTAGAGACTTTGC+TGG 0.483827 7_3:-4034221 None:intergenic
TCATAGCTACCAAGAAATAT+GGG 0.491600 7_3:-4036641 None:intergenic
GGACATGAATTGTTATATGT+AGG 0.492264 7_3:-4029795 None:intergenic
TTCCAATGAGGTGTTCTGCA+AGG 0.494248 7_3:+4032092 Msa1090230:CDS
AGATGAGGATGCAATATTTG+TGG 0.495684 7_3:+4032241 Msa1090230:CDS
GTCAATATAATAGCTCCCTA+GGG 0.500157 7_3:-4029821 None:intergenic
AACAATGTTATTAAGCAAGA+TGG 0.502314 7_3:-4030109 None:intergenic
GTTCCATCAAGAAGGACATT+GGG 0.503823 7_3:-4035877 None:intergenic
GATGGAACAGGCAGGAGGAC+AGG 0.504743 7_3:+4035892 Msa1090230:CDS
TGCTGCAGAGGCTAAATAAG+AGG 0.508283 7_3:+4036691 Msa1090230:exon
GCTGCTAACATGTTCTTCCC+TGG 0.509552 7_3:-4033055 None:intergenic
AGGCTTTCACCGGCAAGGAA+AGG 0.509795 7_3:+4035912 Msa1090230:CDS
TATAATAGCTCCCTAGGGGC+TGG 0.511813 7_3:-4029816 None:intergenic
AGGATAAACTCGCCAAGAGA+AGG 0.516852 7_3:-4033271 None:intergenic
CAATGTACTATGTGAGGAGA+AGG 0.517762 7_3:-4029613 None:intergenic
AACAACTTTCCACGCTGCTT+AGG 0.518664 7_3:-4032266 None:intergenic
GCAGCTGGTTATTGCATGTA+CGG 0.523788 7_3:+4033073 Msa1090230:CDS
CAATTCATGTCCAGCCCCTA+GGG 0.524735 7_3:+4029806 Msa1090230:five_prime_UTR
ACAATTCATGTCCAGCCCCT+AGG 0.525634 7_3:+4029805 Msa1090230:five_prime_UTR
AAATGCAAGTTTCCAACAGA+TGG 0.529309 7_3:+4034194 Msa1090230:CDS
TAGATGATGTTCTGCAACCA+GGG 0.531413 7_3:+4033038 Msa1090230:CDS
ATGTACTATGTGAGGAGAAG+GGG 0.536988 7_3:-4029611 None:intergenic
TCTTTGCAGATCCCAAAGAA+AGG 0.537179 7_3:+4034017 Msa1090230:intron
CGAAGGGAACGCCAAGAACT+GGG 0.540028 7_3:+4034058 Msa1090230:CDS
TGTTCCATCAAGAAGGACAT+TGG 0.542151 7_3:-4035878 None:intergenic
GGGAACACTTACCTGAACAT+TGG 0.543127 7_3:-4031493 None:intergenic
ATAGATGATGTTCTGCAACC+AGG 0.548458 7_3:+4033037 Msa1090230:CDS
GCAGGAGGACAGGCTTTCAC+CGG 0.548518 7_3:+4035902 Msa1090230:CDS
TTTGCTGGTGAACCATCTGT+TGG 0.549730 7_3:-4034206 None:intergenic
TCCTGCCTGTTCCATCAAGA+AGG 0.554789 7_3:-4035885 None:intergenic
GGGAAGAACATGTTAGCAGC+TGG 0.562041 7_3:+4033058 Msa1090230:CDS
GGAAACACCACAATCAATGT+TGG 0.562157 7_3:-4032635 None:intergenic
TTGCAGTTTGTGATAACCAC+TGG 0.562279 7_3:+4033220 Msa1090230:intron
AGATTTATTCGGTGAACGAA+GGG 0.563706 7_3:+4034042 Msa1090230:CDS
CAAAGCTCTTTATGCTGCAG+AGG 0.565129 7_3:+4036679 Msa1090230:CDS
CTTCTCCTCACATAGTACAT+TGG 0.571202 7_3:+4029614 Msa1090230:five_prime_UTR
CTTGGTTTCTGAAGAAGATG+AGG 0.575814 7_3:+4032226 Msa1090230:CDS
AAGATTTATTCGGTGAACGA+AGG 0.579302 7_3:+4034041 Msa1090230:CDS
TGCAAGGCTTTGATAAGCAG+TGG 0.582350 7_3:+4032108 Msa1090230:CDS
ACCATTAACACCACTTCCAG+TGG 0.586134 7_3:-4033236 None:intergenic
GGATAAACTCGCCAAGAGAA+GGG 0.588099 7_3:-4033270 None:intergenic
AATGTACTATGTGAGGAGAA+GGG 0.591233 7_3:-4029612 None:intergenic
TCCTTCTTGATGGAACAGGC+AGG 0.593282 7_3:+4035884 Msa1090230:CDS
CATGTACGGAAGCTCTTGCA+CGG 0.593772 7_3:+4033087 Msa1090230:CDS
TAATTAAAGAACTATAACAA+TGG 0.596667 7_3:-4036855 None:intergenic
GCTTGATGTTCTTTCCAATG+AGG 0.597378 7_3:+4032080 Msa1090230:CDS
TTTGTGATAACCACTGGAAG+TGG 0.598951 7_3:+4033226 Msa1090230:CDS
TGTTTGTTCTGCTGTTAACA+AGG 0.601443 7_3:+4030146 Msa1090230:CDS
ATGTGAATAAGTGTGATGTC+CGG 0.602757 7_3:+4029756 Msa1090230:five_prime_UTR
AACACCACAATCAATGTTGG+AGG 0.603640 7_3:-4032632 None:intergenic
GGAGTATTACCTTAATGTCA+GGG 0.609866 7_3:-4033300 None:intergenic
AGAGTCCAAATGGAAAACTT+CGG 0.610193 7_3:+4035737 Msa1090230:CDS
GGCTCCTCCAACATTGATTG+TGG 0.614292 7_3:+4032628 Msa1090230:CDS
AGGGGTCGGTGTTTCAACTC+CGG 0.626031 7_3:-4029775 None:intergenic
ACATGAATTGTTATATGTAG+GGG 0.626751 7_3:-4029793 None:intergenic
TGTACTATGTGAGGAGAAGG+GGG 0.630317 7_3:-4029610 None:intergenic
GGGAACGCCAAGAACTGGGA+TGG 0.633840 7_3:+4034062 Msa1090230:CDS
TACGATGTGCATCTGCGCTG+TGG 0.637166 7_3:-4030014 None:intergenic
TGTATAGGATAAAGTGCGAG+AGG 0.637754 7_3:-4029639 None:intergenic
GAATTGTTATATGTAGGGGT+CGG 0.641453 7_3:-4029789 None:intergenic
ATTCATACGTACGCAGCAGT+AGG 0.650826 7_3:-4034086 None:intergenic
CATCGTACATTGCTATATGG+AGG 0.654004 7_3:+4035688 Msa1090230:CDS
AGGGACCAATGTACTATGTG+AGG 0.658768 7_3:-4029619 None:intergenic
GTATAGGATAAAGTGCGAGA+GGG 0.664870 7_3:-4029638 None:intergenic
TGGTAGCTATGATGATATCG+AGG 0.676941 7_3:+4036652 Msa1090230:CDS
AACAATATAAGCGATGACGC+AGG 0.683246 7_3:+4029883 Msa1090230:five_prime_UTR
TTCTTGATGGAACAGGCAGG+AGG 0.688021 7_3:+4035887 Msa1090230:CDS
TCTAAGCATCCTGAATCACG+TGG 0.704682 7_3:+4030078 Msa1090230:CDS
TCAATATAATAGCTCCCTAG+GGG 0.718256 7_3:-4029820 None:intergenic
TTTGTGGATCCTAAGCAGCG+TGG 0.736390 7_3:+4032257 Msa1090230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATAACTTAATTTTTTGT+TGG + chr7_3:4031578-4031597 Msa1090230:intron 10.0%
!!! ATTTATTTTTCTTTATTGTT+TGG + chr7_3:4032033-4032052 Msa1090230:intron 10.0%
!!! TCTAATTATTTTAATTTTGA+TGG + chr7_3:4035808-4035827 Msa1090230:intron 10.0%
!!! TTAAAAAGTGATTTTTATTA+TGG - chr7_3:4036006-4036025 None:intergenic 10.0%
!!! TTGAAAAGAATTTATTTTTA+CGG + chr7_3:4036221-4036240 Msa1090230:intron 10.0%
!! ACATATATATCTAAAGAATT+TGG + chr7_3:4029909-4029928 Msa1090230:five_prime_UTR 15.0%
!! TGATGATATATTAAGTTATA+AGG + chr7_3:4031416-4031435 Msa1090230:intron 15.0%
!!! AAAATATAACTTTTTCATGA+TGG + chr7_3:4031754-4031773 Msa1090230:intron 15.0%
!!! AAATCACTTTTGATTAATTA+TGG + chr7_3:4031802-4031821 Msa1090230:intron 15.0%
!! AATAAGTTTGCATTATAAAT+AGG - chr7_3:4033928-4033947 None:intergenic 15.0%
!!! TTTTTCAGACAAAATTAAAA+AGG + chr7_3:4034598-4034617 Msa1090230:intron 15.0%
!!! TTTTCAGACAAAATTAAAAA+GGG + chr7_3:4034599-4034618 Msa1090230:intron 15.0%
!! TTCATATTAAATATTTCACA+CGG - chr7_3:4034881-4034900 None:intergenic 15.0%
!! CTAAAGTCTATAATTATTAA+TGG + chr7_3:4034939-4034958 Msa1090230:intron 15.0%
!!! AAGCTAATATAATTTGTATT+TGG + chr7_3:4035785-4035804 Msa1090230:intron 15.0%
!!! TTTTTCTTCGAAAAATATAT+AGG + chr7_3:4035962-4035981 Msa1090230:intron 15.0%
!!! AACAATTTCTCATTTTAAAT+AGG + chr7_3:4036039-4036058 Msa1090230:intron 15.0%
!!! ATTTTACTACTTTATCTATA+TGG + chr7_3:4036518-4036537 Msa1090230:intron 15.0%
!!! AAACAAGTTTTAATTCTTAT+AGG - chr7_3:4036785-4036804 None:intergenic 15.0%
!! AAATATACATATACATGATA+AGG - chr7_3:4036809-4036828 None:intergenic 15.0%
!! TAATTAAAGAACTATAACAA+TGG - chr7_3:4036858-4036877 None:intergenic 15.0%
!! TGTTATAGTTCTTTAATTAA+TGG + chr7_3:4036859-4036878 Msa1090230:three_prime_UTR 15.0%
!! CTTTAGTAAAACAATTGTAT+AGG - chr7_3:4029657-4029676 None:intergenic 20.0%
!!! TAAAGTGTATGTTTAGAATT+TGG + chr7_3:4029702-4029721 Msa1090230:five_prime_UTR 20.0%
!!! TTTTGAAGATTCATCAAAAA+TGG + chr7_3:4029990-4030009 Msa1090230:exon 20.0%
!!! TATTTGTTTTCATTTTCCAT+AGG + chr7_3:4030191-4030210 Msa1090230:intron 20.0%
!!! TGTGATTTTCTCAAATTATT+AGG + chr7_3:4030403-4030422 Msa1090230:intron 20.0%
!! TTCAATGTAACTATATATGT+TGG - chr7_3:4030641-4030660 None:intergenic 20.0%
!!! TTAAGTTGTTTATCCAAATA+GGG - chr7_3:4031002-4031021 None:intergenic 20.0%
!!! ATTAAGTTGTTTATCCAAAT+AGG - chr7_3:4031003-4031022 None:intergenic 20.0%
!!! ACATACTTATAAGTTTGTTT+GGG - chr7_3:4031517-4031536 None:intergenic 20.0%
!! ATATTGAGATGAAATCAATT+TGG + chr7_3:4031960-4031979 Msa1090230:intron 20.0%
!!! TCTATTTTTTATTACGATTC+AGG + chr7_3:4032578-4032597 Msa1090230:intron 20.0%
!! TTAATTACTCCATTACAATA+CGG + chr7_3:4033186-4033205 Msa1090230:intron 20.0%
!!! TTTTAAATATTGGTTTACCA+TGG - chr7_3:4033517-4033536 None:intergenic 20.0%
!! ACCAATATTTAAAAATCACT+TGG + chr7_3:4033523-4033542 Msa1090230:intron 20.0%
!!! TCCAAGTGATTTTTAAATAT+TGG - chr7_3:4033527-4033546 None:intergenic 20.0%
!!! TTGCCTTATTTTTTATCTTT+TGG + chr7_3:4033851-4033870 Msa1090230:intron 20.0%
!! CAACCAAAAGATAAAAAATA+AGG - chr7_3:4033857-4033876 None:intergenic 20.0%
!! GATGATTGAAAATATAACAA+TGG + chr7_3:4034137-4034156 Msa1090230:intron 20.0%
!!! TTTTTCTTATTACAGTTATG+TGG + chr7_3:4034169-4034188 Msa1090230:intron 20.0%
!!! TTATTTTCATAAACTCTTCT+AGG - chr7_3:4034446-4034465 None:intergenic 20.0%
!! ACAATTGTCTTAAAAACAAA+TGG - chr7_3:4034677-4034696 None:intergenic 20.0%
!!! TGATAGAAAATTGATGATTT+TGG - chr7_3:4035003-4035022 None:intergenic 20.0%
!!! TTTATTACACAACTTGTTAT+TGG + chr7_3:4035220-4035239 Msa1090230:intron 20.0%
!!! AAAGATTTATTTTGTACACT+TGG + chr7_3:4035297-4035316 Msa1090230:intron 20.0%
!!! TTATATTAGCTTAAACATTG+AGG - chr7_3:4035777-4035796 None:intergenic 20.0%
!!! AATATCGTTTTATTGGATTA+GGG - chr7_3:4036199-4036218 None:intergenic 20.0%
!!! AAATATCGTTTTATTGGATT+AGG - chr7_3:4036200-4036219 None:intergenic 20.0%
!!! TTCAACAAATATCGTTTTAT+TGG - chr7_3:4036206-4036225 None:intergenic 20.0%
!! AAGAGATTTCAATAAAAGTA+TGG + chr7_3:4036291-4036310 Msa1090230:intron 20.0%
!! ACTTATAAGGAATTCAATAA+AGG - chr7_3:4036467-4036486 None:intergenic 20.0%
!! TCAATAGTAACATGTATAAT+TGG - chr7_3:4036907-4036926 None:intergenic 20.0%
! ACATGAATTGTTATATGTAG+GGG - chr7_3:4029796-4029815 None:intergenic 25.0%
! GACATGAATTGTTATATGTA+GGG - chr7_3:4029797-4029816 None:intergenic 25.0%
! AACAATGTTATTAAGCAAGA+TGG - chr7_3:4030112-4030131 None:intergenic 25.0%
! TTGCTTAATAACATTGTTCT+TGG + chr7_3:4030114-4030133 Msa1090230:CDS 25.0%
! AAACATAGAATTATGATCAG+TGG - chr7_3:4030268-4030287 None:intergenic 25.0%
! TTCAGTGTAATTATATGTGA+CGG - chr7_3:4030380-4030399 None:intergenic 25.0%
! TCTCAAATTATTAGGAGTTT+CGG + chr7_3:4030411-4030430 Msa1090230:intron 25.0%
!!! CATATCAACCTTTTTTAATC+AGG - chr7_3:4030553-4030572 None:intergenic 25.0%
!!! AAAAAGGTTGATATGAAGTA+AGG + chr7_3:4030558-4030577 Msa1090230:intron 25.0%
! CTGTGATTGATATACAATTA+TGG + chr7_3:4030736-4030755 Msa1090230:intron 25.0%
!!! TAAGGTTTTGTTATATGTGT+AGG + chr7_3:4031434-4031453 Msa1090230:intron 25.0%
!! CATACTTATAAGTTTGTTTG+GGG - chr7_3:4031516-4031535 None:intergenic 25.0%
!! GACATACTTATAAGTTTGTT+TGG - chr7_3:4031518-4031537 None:intergenic 25.0%
!!! ACTTAATTTTTTGTTGGATG+TGG + chr7_3:4031584-4031603 Msa1090230:intron 25.0%
!!! CTTAATTTTTTGTTGGATGT+GGG + chr7_3:4031585-4031604 Msa1090230:intron 25.0%
!!! ATCAAATTTGATTTAGCTCT+TGG + chr7_3:4031710-4031729 Msa1090230:intron 25.0%
! CCAAATTGTTAATGTGTATT+TGG - chr7_3:4032002-4032021 None:intergenic 25.0%
! CCAAATACACATTAACAATT+TGG + chr7_3:4031999-4032018 Msa1090230:intron 25.0%
!! TTCTTTATTGTTTGGAATGA+AGG + chr7_3:4032041-4032060 Msa1090230:intron 25.0%
!! TCTTTATTGTTTGGAATGAA+GGG + chr7_3:4032042-4032061 Msa1090230:intron 25.0%
!! TGTTTAATAGCTTTTGATGA+TGG + chr7_3:4032181-4032200 Msa1090230:intron 25.0%
! AACCTTCTTAGAGAATATAT+GGG - chr7_3:4032325-4032344 None:intergenic 25.0%
! AAACCTTCTTAGAGAATATA+TGG - chr7_3:4032326-4032345 None:intergenic 25.0%
!!! GAAGTTTAACTGTGATTTTT+TGG + chr7_3:4032534-4032553 Msa1090230:intron 25.0%
!! TTGAACATTTTGCAGATTTT+TGG + chr7_3:4032980-4032999 Msa1090230:intron 25.0%
!! TGAACATTTTGCAGATTTTT+GGG + chr7_3:4032981-4033000 Msa1090230:intron 25.0%
! TAATTACTCCATTACAATAC+GGG + chr7_3:4033187-4033206 Msa1090230:intron 25.0%
! AATAAATCTTGCCTTTCTTT+GGG - chr7_3:4034031-4034050 None:intergenic 25.0%
! AAAGAAAGGCAAGATTTATT+CGG + chr7_3:4034031-4034050 Msa1090230:CDS 25.0%
! TTGTCTTAAAAACAAATGGT+GGG - chr7_3:4034673-4034692 None:intergenic 25.0%
! ATTGTCTTAAAAACAAATGG+TGG - chr7_3:4034674-4034693 None:intergenic 25.0%
!! TCATATGAGTTTTCATGTTT+TGG + chr7_3:4035020-4035039 Msa1090230:intron 25.0%
! AGATTAAAGAAGCTGAAAAA+TGG - chr7_3:4035053-4035072 None:intergenic 25.0%
! TATATACACTCTTCACTAAA+GGG - chr7_3:4035119-4035138 None:intergenic 25.0%
! ATATATACACTCTTCACTAA+AGG - chr7_3:4035120-4035139 None:intergenic 25.0%
! CTTATGTTTGAAAACTAATG+AGG - chr7_3:4035146-4035165 None:intergenic 25.0%
!!! TTATTACTACAACTTGTTGT+TGG + chr7_3:4035322-4035341 Msa1090230:intron 25.0%
!!! ATCTGACTAAAGATTTTTAG+TGG + chr7_3:4035391-4035410 Msa1090230:intron 25.0%
!!! TCTGACTAAAGATTTTTAGT+GGG + chr7_3:4035392-4035411 Msa1090230:intron 25.0%
! GGATAAAAAAAAATGTGGTT+GGG - chr7_3:4035427-4035446 None:intergenic 25.0%
! TGGATAAAAAAAAATGTGGT+TGG - chr7_3:4035428-4035447 None:intergenic 25.0%
! CTTGTGGATAAAAAAAAATG+TGG - chr7_3:4035432-4035451 None:intergenic 25.0%
!! TTTTTGTACATTAAACAGCA+TGG + chr7_3:4035654-4035673 Msa1090230:intron 25.0%
!! TAGATTTTTCTTTTTTCTGC+AGG + chr7_3:4036065-4036084 Msa1090230:intron 25.0%
!!! TTTTAGAAGTTTGCATCATA+TGG - chr7_3:4036121-4036140 None:intergenic 25.0%
! ATAATAAGAGTAGAGATACA+TGG + chr7_3:4036268-4036287 Msa1090230:intron 25.0%
! AGAAGATTTATCAGTTGATT+GGG - chr7_3:4036572-4036591 None:intergenic 25.0%
! TAGAAGATTTATCAGTTGAT+TGG - chr7_3:4036573-4036592 None:intergenic 25.0%
! GATAAATCTTCTATCTTATC+AGG + chr7_3:4036580-4036599 Msa1090230:intron 25.0%
GGACATGAATTGTTATATGT+AGG - chr7_3:4029798-4029817 None:intergenic 30.0%
! CGATTGATTCATTCATTGAT+TGG + chr7_3:4029960-4029979 Msa1090230:five_prime_UTR 30.0%
ATTCAACACAAAACGTGTTA+TGG - chr7_3:4030052-4030071 None:intergenic 30.0%
ACAAATACGAAAAAGAGTGA+AGG - chr7_3:4030178-4030197 None:intergenic 30.0%
TATCAGTGCTTCATTAAACA+TGG + chr7_3:4030472-4030491 Msa1090230:intron 30.0%
ATCAGTGCTTCATTAAACAT+GGG + chr7_3:4030473-4030492 Msa1090230:intron 30.0%
TGATACTGCCTGATTAAAAA+AGG + chr7_3:4030542-4030561 Msa1090230:intron 30.0%
! TTACATTGCTGTTGTAATTG+TGG + chr7_3:4030866-4030885 Msa1090230:intron 30.0%
AGTTGTTTATCCAACTGATT+GGG - chr7_3:4031146-4031165 None:intergenic 30.0%
AAGTTGTTTATCCAACTGAT+TGG - chr7_3:4031147-4031166 None:intergenic 30.0%
TGAGATTACTCTTGCAATAA+TGG + chr7_3:4031332-4031351 Msa1090230:intron 30.0%
!!! TATGTTTTAACAGTGCATCT+TGG + chr7_3:4032208-4032227 Msa1090230:intron 30.0%
! TTCCCATATATTCTCTAAGA+AGG + chr7_3:4032320-4032339 Msa1090230:intron 30.0%
!!! GTTGTTTTTGATCCATTAGA+CGG + chr7_3:4032607-4032626 Msa1090230:CDS 30.0%
ACAAATTTGAGTAGGGATTA+GGG - chr7_3:4032677-4032696 None:intergenic 30.0%
TTGCAAGACAAATTTGAGTA+GGG - chr7_3:4032684-4032703 None:intergenic 30.0%
ATTGCAAGACAAATTTGAGT+AGG - chr7_3:4032685-4032704 None:intergenic 30.0%
! GTTCTTGTTATATGTGTAGA+AGG + chr7_3:4032919-4032938 Msa1090230:intron 30.0%
AATAGTGATCCATAAGTTAG+CGG - chr7_3:4033324-4033343 None:intergenic 30.0%
GAGCAAATAGAAACTTAAGA+AGG - chr7_3:4033408-4033427 None:intergenic 30.0%
TTCATGAATCAAGCATTACT+AGG + chr7_3:4033433-4033452 Msa1090230:intron 30.0%
CTAAACTTGACTACCTTAAT+AGG + chr7_3:4033487-4033506 Msa1090230:intron 30.0%
TTACCATGGATAACCTATTA+AGG - chr7_3:4033503-4033522 None:intergenic 30.0%
!!! GTTTTTTATTGAACTGATGC+CGG + chr7_3:4033687-4033706 Msa1090230:intron 30.0%
!!! TTTGAAGGATTTTCAAGTAC+CGG + chr7_3:4033788-4033807 Msa1090230:intron 30.0%
AAATAAGGCAAATTCTACAG+TGG - chr7_3:4033842-4033861 None:intergenic 30.0%
TAAATATCAATTGAGAGCAG+AGG - chr7_3:4033905-4033924 None:intergenic 30.0%
ACACCATTTGTGTTAATTGT+TGG + chr7_3:4033984-4034003 Msa1090230:intron 30.0%
ACACCAACAATTAACACAAA+TGG - chr7_3:4033990-4034009 None:intergenic 30.0%
GAATAAATCTTGCCTTTCTT+TGG - chr7_3:4034032-4034051 None:intergenic 30.0%
ATATATCTTAGAGACTTTGC+TGG - chr7_3:4034224-4034243 None:intergenic 30.0%
!! GCAAAGTCTCTAAGATATAT+TGG + chr7_3:4034224-4034243 Msa1090230:intron 30.0%
!! AGTCTCTAAGATATATTGGA+AGG + chr7_3:4034228-4034247 Msa1090230:intron 30.0%
AAACTCTTCTAGGTAGTTTA+TGG - chr7_3:4034436-4034455 None:intergenic 30.0%
CAAGTTCTATTCACACTTTA+TGG + chr7_3:4034756-4034775 Msa1090230:intron 30.0%
TGGTGAAACTAGGAATTATA+TGG - chr7_3:4034983-4035002 None:intergenic 30.0%
!! TTGATGATTTTGGTGAAACT+AGG - chr7_3:4034993-4035012 None:intergenic 30.0%
AAACCAAGTGTACAAAATAG+AGG - chr7_3:4035202-4035221 None:intergenic 30.0%
!!! CTGACTAAAGATTTTTAGTG+GGG + chr7_3:4035393-4035412 Msa1090230:intron 30.0%
AAAAAAAATGTGGTTGGGAT+AGG - chr7_3:4035422-4035441 None:intergenic 30.0%
GTATGGAAATTAACATAACG+TGG + chr7_3:4036308-4036327 Msa1090230:intron 30.0%
! ACTCTGATGTAAAGTTTGTT+CGG - chr7_3:4036376-4036395 None:intergenic 30.0%
!! GGATGAGTTCTAAACTTATA+AGG - chr7_3:4036480-4036499 None:intergenic 30.0%
AGTAGTAAAATCACACAACA+GGG - chr7_3:4036509-4036528 None:intergenic 30.0%
AAGTAGTAAAATCACACAAC+AGG - chr7_3:4036510-4036529 None:intergenic 30.0%
! GATCTTTCATGCAATTTTGT+TGG - chr7_3:4036620-4036639 None:intergenic 30.0%
TCATAGCTACCAAGAAATAT+GGG - chr7_3:4036644-4036663 None:intergenic 30.0%
ATCATAGCTACCAAGAAATA+TGG - chr7_3:4036645-4036664 None:intergenic 30.0%
TGCGAGTAGTAAAAAACAAA+AGG - chr7_3:4036731-4036750 None:intergenic 30.0%
CAAGCATTTATCCAATTGTT+AGG + chr7_3:4036749-4036768 Msa1090230:three_prime_UTR 30.0%
AATGTACTATGTGAGGAGAA+GGG - chr7_3:4029615-4029634 None:intergenic 35.0%
ATGTGAATAAGTGTGATGTC+CGG + chr7_3:4029756-4029775 Msa1090230:five_prime_UTR 35.0%
GAATTGTTATATGTAGGGGT+CGG - chr7_3:4029792-4029811 None:intergenic 35.0%
TCAATATAATAGCTCCCTAG+GGG - chr7_3:4029823-4029842 None:intergenic 35.0%
GTCAATATAATAGCTCCCTA+GGG - chr7_3:4029824-4029843 None:intergenic 35.0%
TGTCAATATAATAGCTCCCT+AGG - chr7_3:4029825-4029844 None:intergenic 35.0%
TTGGTACGTACATAGTTGAT+TGG + chr7_3:4029928-4029947 Msa1090230:five_prime_UTR 35.0%
!! CGTACATAGTTGATTGGTTT+CGG + chr7_3:4029934-4029953 Msa1090230:five_prime_UTR 35.0%
TGTTTGTTCTGCTGTTAACA+AGG + chr7_3:4030146-4030165 Msa1090230:CDS 35.0%
!!! ATTTTGAGTTACCATGCTCA+GGG + chr7_3:4030239-4030258 Msa1090230:intron 35.0%
CATAGAATTATGATCAGTGG+TGG - chr7_3:4030265-4030284 None:intergenic 35.0%
GTAATTATATGTGACGGTGT+CGG - chr7_3:4030374-4030393 None:intergenic 35.0%
!! AGGTTGATATGAAGTAAGGA+AGG + chr7_3:4030562-4030581 Msa1090230:intron 35.0%
CCATGACTGTATATCAATCA+CGG - chr7_3:4030818-4030837 None:intergenic 35.0%
! TAAGTGTGTGTTTGGAATTG+CGG + chr7_3:4030931-4030950 Msa1090230:intron 35.0%
! TTTGGTACTGAATGCGATAT+TGG - chr7_3:4030965-4030984 None:intergenic 35.0%
GCATTCAGTACCAAACATAA+AGG + chr7_3:4030970-4030989 Msa1090230:intron 35.0%
AGTACCAAACATAAAGGCTA+AGG + chr7_3:4030976-4030995 Msa1090230:intron 35.0%
! TTTATTTGCTAGTAACACCC+TGG + chr7_3:4031023-4031042 Msa1090230:intron 35.0%
! AGAACCTGAGTTCGATTTTT+GGG - chr7_3:4031123-4031142 None:intergenic 35.0%
!! GTTTTGTTATATGTGTAGGC+TGG + chr7_3:4031438-4031457 Msa1090230:intron 35.0%
ACATTGCTATAGCTGCTATT+TGG - chr7_3:4031882-4031901 None:intergenic 35.0%
AGATGAGGATGCAATATTTG+TGG + chr7_3:4032241-4032260 Msa1090230:CDS 35.0%
CCTTGATTACAACAACATCA+TGG - chr7_3:4032387-4032406 None:intergenic 35.0%
CCATGATGTTGTTGTAATCA+AGG + chr7_3:4032384-4032403 Msa1090230:intron 35.0%
! TGACAGTCTAAAACCTTCTA+CGG + chr7_3:4032510-4032529 Msa1090230:intron 35.0%
ATTGATTGTGGTGTTTCCAT+TGG + chr7_3:4032640-4032659 Msa1090230:intron 35.0%
GACAAATTTGAGTAGGGATT+AGG - chr7_3:4032678-4032697 None:intergenic 35.0%
CCATACTAACTGTATATTGC+CGG + chr7_3:4032951-4032970 Msa1090230:intron 35.0%
GCAAAATGTTCAATTGACAC+CGG - chr7_3:4032973-4032992 None:intergenic 35.0%
! CATCATCTATGATTGGTTCA+TGG - chr7_3:4033027-4033046 None:intergenic 35.0%
TGCAGAACATCATCTATGAT+TGG - chr7_3:4033034-4033053 None:intergenic 35.0%
! GGAGTATTACCTTAATGTCA+GGG - chr7_3:4033303-4033322 None:intergenic 35.0%
CTACCTTAATAGGTTATCCA+TGG + chr7_3:4033497-4033516 Msa1090230:intron 35.0%
! GTCTGTCGTTGAAATTTTGA+AGG + chr7_3:4033773-4033792 Msa1090230:intron 35.0%
!! GTCAAGCTCTAAACAAATAC+TGG - chr7_3:4033883-4033902 None:intergenic 35.0%
TTGTGTTAATTGTTGGTGTG+TGG + chr7_3:4033991-4034010 Msa1090230:intron 35.0%
! AAGATTTATTCGGTGAACGA+AGG + chr7_3:4034041-4034060 Msa1090230:CDS 35.0%
! AGATTTATTCGGTGAACGAA+GGG + chr7_3:4034042-4034061 Msa1090230:CDS 35.0%
AAATGCAAGTTTCCAACAGA+TGG + chr7_3:4034194-4034213 Msa1090230:CDS 35.0%
TACAGATTCTCAACTCTAGA+AGG + chr7_3:4034254-4034273 Msa1090230:intron 35.0%
GCCAGTAGTTAAACTCAAAT+AGG + chr7_3:4034538-4034557 Msa1090230:intron 35.0%
! GCCTATTTGAGTTTAACTAC+TGG - chr7_3:4034542-4034561 None:intergenic 35.0%
CTGAAAAACCAACTATGAAG+TGG - chr7_3:4034586-4034605 None:intergenic 35.0%
!!! TGAGTTTTCATGTTTTGGTG+TGG + chr7_3:4035025-4035044 Msa1090230:intron 35.0%
TGTGATCTGATCATAACTCA+TGG + chr7_3:4035076-4035095 Msa1090230:intron 35.0%
ACAAAATAGAGGCTTAAGTC+CGG - chr7_3:4035191-4035210 None:intergenic 35.0%
! AAGCCTCTATTTTGTACACT+TGG + chr7_3:4035196-4035215 Msa1090230:intron 35.0%
! AGATTAGTCATCGGTAAAGT+CGG - chr7_3:4035259-4035278 None:intergenic 35.0%
! TCACAACAGAGATTAGTCAT+CGG - chr7_3:4035268-4035287 None:intergenic 35.0%
! AGATTAGTCATCGGTAAAGT+CGG - chr7_3:4035259-4035278 None:intergenic 35.0%
! TCACAACAGAGATTAGTCAT+CGG - chr7_3:4035268-4035287 None:intergenic 35.0%
ATACATCACATAAGTCTGAG+TGG - chr7_3:4035496-4035515 None:intergenic 35.0%
GTTCATCGTACATTGCTATA+TGG + chr7_3:4035685-4035704 Msa1090230:CDS 35.0%
AGAGTCCAAATGGAAAACTT+CGG + chr7_3:4035737-4035756 Msa1090230:CDS 35.0%
! ACATACCGAAGTTTTCCATT+TGG - chr7_3:4035745-4035764 None:intergenic 35.0%
AGTTGCTCATAGCTTAGTTA+GGG - chr7_3:4036339-4036358 None:intergenic 35.0%
TAGTTGCTCATAGCTTAGTT+AGG - chr7_3:4036340-4036359 None:intergenic 35.0%
GAAAGATCTCCCATATTTCT+TGG + chr7_3:4036632-4036651 Msa1090230:CDS 35.0%
ATGTACTATGTGAGGAGAAG+GGG - chr7_3:4029614-4029633 None:intergenic 40.0%
CAATGTACTATGTGAGGAGA+AGG - chr7_3:4029616-4029635 None:intergenic 40.0%
CTTCTCCTCACATAGTACAT+TGG + chr7_3:4029614-4029633 Msa1090230:five_prime_UTR 40.0%
GTATAGGATAAAGTGCGAGA+GGG - chr7_3:4029641-4029660 None:intergenic 40.0%
TGTATAGGATAAAGTGCGAG+AGG - chr7_3:4029642-4029661 None:intergenic 40.0%
AACAATATAAGCGATGACGC+AGG + chr7_3:4029883-4029902 Msa1090230:five_prime_UTR 40.0%
GTAAAATCTCCACGTGATTC+AGG - chr7_3:4030090-4030109 None:intergenic 40.0%
!!! GATTTTGAGTTACCATGCTC+AGG + chr7_3:4030238-4030257 Msa1090230:intron 40.0%
!! TACGAAGCACTGATACTTCT+CGG + chr7_3:4030313-4030332 Msa1090230:intron 40.0%
GTCAGTATCCATATCATGTC+TGG + chr7_3:4030437-4030456 Msa1090230:intron 40.0%
!! ATGAAGCACTGATACGAACA+AGG - chr7_3:4030466-4030485 None:intergenic 40.0%
! GTTAGTGTTTCTGTTGTGTC+TGG + chr7_3:4030698-4030717 Msa1090230:intron 40.0%
GGTTGAAGAGACATCAAAAG+TGG + chr7_3:4030757-4030776 Msa1090230:intron 40.0%
CCGTGATTGATATACAGTCA+TGG + chr7_3:4030815-4030834 Msa1090230:intron 40.0%
GGTTGAAGAGACATCAAAAG+TGG + chr7_3:4030757-4030776 Msa1090230:intron 40.0%
ACAACGTCAAAACCGTAGAT+TGG - chr7_3:4030900-4030919 None:intergenic 40.0%
GGAGACTTTAAGTGTGTGTT+TGG + chr7_3:4030923-4030942 Msa1090230:intron 40.0%
ATAAAGGCTAAGGCCCTATT+TGG + chr7_3:4030986-4031005 Msa1090230:intron 40.0%
! GAGAACCTGAGTTCGATTTT+TGG - chr7_3:4031124-4031143 None:intergenic 40.0%
GCTTATCTTGATAAGCGCTT+AGG + chr7_3:4031176-4031195 Msa1090230:intron 40.0%
CATGATGGCTAGTGAAATGA+AGG + chr7_3:4031769-4031788 Msa1090230:intron 40.0%
TGGCTAGTGAAATGAAGGTT+TGG + chr7_3:4031774-4031793 Msa1090230:intron 40.0%
GGTCTGTTCAAATTCTGCTA+CGG - chr7_3:4031913-4031932 None:intergenic 40.0%
GCTTGATGTTCTTTCCAATG+AGG + chr7_3:4032080-4032099 Msa1090230:CDS 40.0%
! CTTGGTTTCTGAAGAAGATG+AGG + chr7_3:4032226-4032245 Msa1090230:CDS 40.0%
! ATTTTGTCGTGGTTGCATTG+TGG + chr7_3:4032361-4032380 Msa1090230:intron 40.0%
CAGTTAAACTTCTCCGTAGA+AGG - chr7_3:4032526-4032545 None:intergenic 40.0%
AACACCACAATCAATGTTGG+AGG - chr7_3:4032635-4032654 None:intergenic 40.0%
GGAAACACCACAATCAATGT+TGG - chr7_3:4032638-4032657 None:intergenic 40.0%
TAGGGATCATACAGTTCCAA+TGG - chr7_3:4032659-4032678 None:intergenic 40.0%
TCACAGACACTTCATATCGA+AGG + chr7_3:4032719-4032738 Msa1090230:intron 40.0%
! ATATCGAAGGCATGTATGTC+TGG + chr7_3:4032732-4032751 Msa1090230:intron 40.0%
TCATGTCTAGTGTTTGTGTC+AGG + chr7_3:4032860-4032879 Msa1090230:intron 40.0%
CCGGCAATATACAGTTAGTA+TGG - chr7_3:4032954-4032973 None:intergenic 40.0%
ATAGATGATGTTCTGCAACC+AGG + chr7_3:4033037-4033056 Msa1090230:CDS 40.0%
TAGATGATGTTCTGCAACCA+GGG + chr7_3:4033038-4033057 Msa1090230:CDS 40.0%
TTGCAGTTTGTGATAACCAC+TGG + chr7_3:4033220-4033239 Msa1090230:intron 40.0%
TTTGTGATAACCACTGGAAG+TGG + chr7_3:4033226-4033245 Msa1090230:CDS 40.0%
! CGGAGTATTACCTTAATGTC+AGG - chr7_3:4033304-4033323 None:intergenic 40.0%
GGTAATACTCCGCTAACTTA+TGG + chr7_3:4033312-4033331 Msa1090230:intron 40.0%
! ATACGAACTTGCTCATTTCG+AGG + chr7_3:4033458-4033477 Msa1090230:intron 40.0%
! AACTTGCTCATTTCGAGGTA+GGG + chr7_3:4033463-4033482 Msa1090230:intron 40.0%
ATCAAGCCACCATAAAGACA+AGG - chr7_3:4033597-4033616 None:intergenic 40.0%
TGTCTTTATGGTGGCTTGAT+TGG + chr7_3:4033597-4033616 Msa1090230:intron 40.0%
TGCTTATACGGTCACTTAAC+CGG - chr7_3:4033709-4033728 None:intergenic 40.0%
TTGTGCCATCGTTGCTTATA+CGG - chr7_3:4033721-4033740 None:intergenic 40.0%
TATAAGCAACGATGGCACAA+AGG + chr7_3:4033721-4033740 Msa1090230:intron 40.0%
!!! GATTTTCAAGTACCGGTCTA+TGG + chr7_3:4033795-4033814 Msa1090230:intron 40.0%
!! CACAAATGGTGTTGATACTC+AGG - chr7_3:4033976-4033995 None:intergenic 40.0%
TCTTTGCAGATCCCAAAGAA+AGG + chr7_3:4034017-4034036 Msa1090230:intron 40.0%
!!! TTGCTTACTGCCCTTGTTTT+AGG + chr7_3:4034285-4034304 Msa1090230:intron 40.0%
AAGCACTCGTGAGATTGTTT+GGG - chr7_3:4034516-4034535 None:intergenic 40.0%
TAAGCACTCGTGAGATTGTT+TGG - chr7_3:4034517-4034536 None:intergenic 40.0%
ATTGCCCACAAAAGTTGAAC+CGG + chr7_3:4035169-4035188 Msa1090230:intron 40.0%
! AAGTCCGGTTCAACTTTTGT+GGG - chr7_3:4035176-4035195 None:intergenic 40.0%
! TAAGTCCGGTTCAACTTTTG+TGG - chr7_3:4035177-4035196 None:intergenic 40.0%
AGATCTCTTAGGTAAGGTCT+CGG - chr7_3:4035463-4035482 None:intergenic 40.0%
GAACTCAGATCTCTTAGGTA+AGG - chr7_3:4035469-4035488 None:intergenic 40.0%
GAACTGAACTCAGATCTCTT+AGG - chr7_3:4035474-4035493 None:intergenic 40.0%
CATCGTACATTGCTATATGG+AGG + chr7_3:4035688-4035707 Msa1090230:CDS 40.0%
TTTGTCAGCAGGGTACAAAA+AGG - chr7_3:4035716-4035735 None:intergenic 40.0%
! TTGGACTCTTTTTGTCAGCA+GGG - chr7_3:4035726-4035745 None:intergenic 40.0%
! TTTGGACTCTTTTTGTCAGC+AGG - chr7_3:4035727-4035746 None:intergenic 40.0%
GCTGACAAAAAGAGTCCAAA+TGG + chr7_3:4035727-4035746 Msa1090230:CDS 40.0%
GTTCCATCAAGAAGGACATT+GGG - chr7_3:4035880-4035899 None:intergenic 40.0%
TGTTCCATCAAGAAGGACAT+TGG - chr7_3:4035881-4035900 None:intergenic 40.0%
AATGTCCTTCTTGATGGAAC+AGG + chr7_3:4035880-4035899 Msa1090230:CDS 40.0%
TGGTAGCTATGATGATATCG+AGG + chr7_3:4036652-4036671 Msa1090230:CDS 40.0%
! GCACTTGTTAGCCTAACAAT+TGG - chr7_3:4036763-4036782 None:intergenic 40.0%
TGTACTATGTGAGGAGAAGG+GGG - chr7_3:4029613-4029632 None:intergenic 45.0%
AGGGACCAATGTACTATGTG+AGG - chr7_3:4029622-4029641 None:intergenic 45.0%
TCTAAGCATCCTGAATCACG+TGG + chr7_3:4030078-4030097 Msa1090230:CDS 45.0%
CGTCAAGTGCAGAAAACCTA+TGG - chr7_3:4030210-4030229 None:intergenic 45.0%
! GCACTGATACTTCTCGGATT+AGG + chr7_3:4030319-4030338 Msa1090230:intron 45.0%
!! TTCTCGGATTAGGAGTGTCT+TGG + chr7_3:4030329-4030348 Msa1090230:intron 45.0%
!! GATTAGGAGTGTCTTGGTGT+TGG + chr7_3:4030335-4030354 Msa1090230:intron 45.0%
CAAGGACACCAGACATGATA+TGG - chr7_3:4030448-4030467 None:intergenic 45.0%
ACTGAGACATGCCTAATACG+AGG - chr7_3:4030593-4030612 None:intergenic 45.0%
GAAACACTAACACGTCGACA+CGG - chr7_3:4030689-4030708 None:intergenic 45.0%
GTGGTTAAGCTGCCAATCTA+CGG + chr7_3:4030885-4030904 Msa1090230:intron 45.0%
!! CTACGGTTTTGACGTTGTTG+TGG + chr7_3:4030902-4030921 Msa1090230:intron 45.0%
! AGGGCCTTAGCCTTTATGTT+TGG - chr7_3:4030983-4031002 None:intergenic 45.0%
ACCCTGGTTTCTTTCACAAG+CGG + chr7_3:4031039-4031058 Msa1090230:intron 45.0%
CAACCAAACTCCAGATCAGT+GGG - chr7_3:4031066-4031085 None:intergenic 45.0%
! CACTGATCTGGAGTTTGGTT+GGG + chr7_3:4031065-4031084 Msa1090230:intron 45.0%
TCCACCCAAAAATCGAACTC+AGG + chr7_3:4031116-4031135 Msa1090230:intron 45.0%
!! ACCTGAGTTCGATTTTTGGG+TGG - chr7_3:4031120-4031139 None:intergenic 45.0%
GGGAACACTTACCTGAACAT+TGG - chr7_3:4031496-4031515 None:intergenic 45.0%
TCGCAGATCGCAACATATAG+TGG - chr7_3:4031934-4031953 None:intergenic 45.0%
! TTCCAATGAGGTGTTCTGCA+AGG + chr7_3:4032092-4032111 Msa1090230:CDS 45.0%
! TGCAAGGCTTTGATAAGCAG+TGG + chr7_3:4032108-4032127 Msa1090230:CDS 45.0%
AACAACTTTCCACGCTGCTT+AGG - chr7_3:4032269-4032288 None:intergenic 45.0%
! TTGCAGTAGCGATTTTGTCG+TGG + chr7_3:4032350-4032369 Msa1090230:intron 45.0%
TTTCTGTGTCATGCCGGTAT+CGG - chr7_3:4032778-4032797 None:intergenic 45.0%
CACACATTTCTGTGTCATGC+CGG - chr7_3:4032784-4032803 None:intergenic 45.0%
GCAGCTGGTTATTGCATGTA+CGG + chr7_3:4033073-4033092 Msa1090230:CDS 45.0%
CAGCAGATCCCGTATTGTAA+TGG - chr7_3:4033198-4033217 None:intergenic 45.0%
CATTACAATACGGGATCTGC+TGG + chr7_3:4033196-4033215 Msa1090230:intron 45.0%
! ACCACTGGAAGTGGTGTTAA+TGG + chr7_3:4033235-4033254 Msa1090230:CDS 45.0%
ACCATTAACACCACTTCCAG+TGG - chr7_3:4033239-4033258 None:intergenic 45.0%
GGATAAACTCGCCAAGAGAA+GGG - chr7_3:4033273-4033292 None:intergenic 45.0%
AGGATAAACTCGCCAAGAGA+AGG - chr7_3:4033274-4033293 None:intergenic 45.0%
CCTTAATGTCAGGGTGAGTT+AGG - chr7_3:4033294-4033313 None:intergenic 45.0%
CCTAACTCACCCTGACATTA+AGG + chr7_3:4033291-4033310 Msa1090230:CDS 45.0%
! GAACTTGCTCATTTCGAGGT+AGG + chr7_3:4033462-4033481 Msa1090230:intron 45.0%
CAATGATCGAATACGCCCAT+TGG + chr7_3:4033554-4033573 Msa1090230:intron 45.0%
CACACTCCTTGTCTTTATGG+TGG + chr7_3:4033588-4033607 Msa1090230:intron 45.0%
AGTGACCGTATAAGCAACGA+TGG + chr7_3:4033713-4033732 Msa1090230:intron 45.0%
TGTGAGCTTCTACTTCCAGA+AGG + chr7_3:4033746-4033765 Msa1090230:intron 45.0%
!! TTTCAAGTACCGGTCTATGG+TGG + chr7_3:4033798-4033817 Msa1090230:intron 45.0%
ATAGGTGATCCACCATAGAC+CGG - chr7_3:4033810-4033829 None:intergenic 45.0%
! TGGTGGATCACCTATCGAAT+TGG + chr7_3:4033815-4033834 Msa1090230:intron 45.0%
CTACAGTGGACCAATTCGAT+AGG - chr7_3:4033828-4033847 None:intergenic 45.0%
ATTCATACGTACGCAGCAGT+AGG - chr7_3:4034089-4034108 None:intergenic 45.0%
TTTGCTGGTGAACCATCTGT+TGG - chr7_3:4034209-4034228 None:intergenic 45.0%
CCACAGAGAGCCTAAAACAA+GGG - chr7_3:4034298-4034317 None:intergenic 45.0%
TCCACAGAGAGCCTAAAACA+AGG - chr7_3:4034299-4034318 None:intergenic 45.0%
ACTCTTCACTAAAGGGTCTG+TGG - chr7_3:4035112-4035131 None:intergenic 45.0%
GATCTCTTAGGTAAGGTCTC+GGG - chr7_3:4035462-4035481 None:intergenic 45.0%
CTTCCCAATGTCCTTCTTGA+TGG + chr7_3:4035874-4035893 Msa1090230:CDS 45.0%
ATGCATTACCCTTTCCTTGC+CGG - chr7_3:4035924-4035943 None:intergenic 45.0%
AATCACACAACAGGGCATGT+TGG - chr7_3:4036501-4036520 None:intergenic 45.0%
CAAAGCTCTTTATGCTGCAG+AGG + chr7_3:4036679-4036698 Msa1090230:CDS 45.0%
TGCTGCAGAGGCTAAATAAG+AGG + chr7_3:4036691-4036710 Msa1090230:exon 45.0%
!!! AAATTTTTTATTTATTTTGT+TGG - chr7_3:4035603-4035622 None:intergenic 5.0%
!!! GGTGGTGGGTTCGATGTTTT+GGG - chr7_3:4029587-4029606 None:intergenic 50.0%
!!! TGGTGGTGGGTTCGATGTTT+TGG - chr7_3:4029588-4029607 None:intergenic 50.0%
TATGTGAGGAGAAGGGGGAA+TGG - chr7_3:4029608-4029627 None:intergenic 50.0%
ACAATTCATGTCCAGCCCCT+AGG + chr7_3:4029805-4029824 Msa1090230:five_prime_UTR 50.0%
CAATTCATGTCCAGCCCCTA+GGG + chr7_3:4029806-4029825 Msa1090230:five_prime_UTR 50.0%
TATAATAGCTCCCTAGGGGC+TGG - chr7_3:4029819-4029838 None:intergenic 50.0%
GGAAGGACACTCCTCGTATT+AGG + chr7_3:4030579-4030598 Msa1090230:intron 50.0%
! GTGTGTGTTTGGAATTGCGG+TGG + chr7_3:4030934-4030953 Msa1090230:intron 50.0%
CCCGCTTGTGAAAGAAACCA+GGG - chr7_3:4031043-4031062 None:intergenic 50.0%
CCCTGGTTTCTTTCACAAGC+GGG + chr7_3:4031040-4031059 Msa1090230:intron 50.0%
CCAACCAAACTCCAGATCAG+TGG - chr7_3:4031067-4031086 None:intergenic 50.0%
! CCACTGATCTGGAGTTTGGT+TGG + chr7_3:4031064-4031083 Msa1090230:intron 50.0%
! TGATCTGGAGTTTGGTTGGG+AGG + chr7_3:4031068-4031087 Msa1090230:intron 50.0%
CTCAGGTTCTCCCAATCAGT+TGG + chr7_3:4031133-4031152 Msa1090230:intron 50.0%
!! GCTGGTCTTGCAAAGCTCAT+TGG + chr7_3:4031456-4031475 Msa1090230:CDS 50.0%
GCAAAGCTCATTGGACTTGC+AGG + chr7_3:4031465-4031484 Msa1090230:CDS 50.0%
TGCAGGAGAGACCAATGTTC+AGG + chr7_3:4031482-4031501 Msa1090230:CDS 50.0%
AGCCTTGCAGAACACCTCAT+TGG - chr7_3:4032097-4032116 None:intergenic 50.0%
AGCAGTGGCAGAACAGTAAG+TGG + chr7_3:4032123-4032142 Msa1090230:intron 50.0%
TTTGTGGATCCTAAGCAGCG+TGG + chr7_3:4032257-4032276 Msa1090230:CDS 50.0%
ATGTTGGAGGAGCCGTCTAA+TGG - chr7_3:4032622-4032641 None:intergenic 50.0%
! GGCTCCTCCAACATTGATTG+TGG + chr7_3:4032628-4032647 Msa1090230:CDS 50.0%
GCTGCTAACATGTTCTTCCC+TGG - chr7_3:4033058-4033077 None:intergenic 50.0%
GGGAAGAACATGTTAGCAGC+TGG + chr7_3:4033058-4033077 Msa1090230:CDS 50.0%
CATGTACGGAAGCTCTTGCA+CGG + chr7_3:4033087-4033106 Msa1090230:CDS 50.0%
TTCACTCTCGACCCTTCTCT+TGG + chr7_3:4033259-4033278 Msa1090230:CDS 50.0%
! TGCTCAGCTCTGACGAAAGT+CGG + chr7_3:4033380-4033399 Msa1090230:intron 50.0%
TGTGCGCTTCTACTGCCAAT+GGG - chr7_3:4033572-4033591 None:intergenic 50.0%
GCGCACACTCCTTGTCTTTA+TGG + chr7_3:4033585-4033604 Msa1090230:intron 50.0%
CAACGACAGACATTGCCTTC+TGG - chr7_3:4033764-4033783 None:intergenic 50.0%
AGTAGGACCATCCCAGTTCT+TGG - chr7_3:4034072-4034091 None:intergenic 50.0%
!!! CCCTTGTTTTAGGCTCTCTG+TGG + chr7_3:4034295-4034314 Msa1090230:intron 50.0%
TCCTTCTTGATGGAACAGGC+AGG + chr7_3:4035884-4035903 Msa1090230:CDS 50.0%
TCCTGCCTGTTCCATCAAGA+AGG - chr7_3:4035888-4035907 None:intergenic 50.0%
TTCTTGATGGAACAGGCAGG+AGG + chr7_3:4035887-4035906 Msa1090230:CDS 50.0%
! AGGGGTCGGTGTTTCAACTC+CGG - chr7_3:4029778-4029797 None:intergenic 55.0%
TACGATGTGCATCTGCGCTG+TGG - chr7_3:4030017-4030036 None:intergenic 55.0%
GCCCGCTTGTGAAAGAAACC+AGG - chr7_3:4031044-4031063 None:intergenic 55.0%
CGTGTGTCTGTGTCCGATAC+CGG + chr7_3:4032762-4032781 Msa1090230:intron 55.0%
GACTTTCGTCAGAGCTGAGC+AGG - chr7_3:4033381-4033400 None:intergenic 55.0%
! GCTCAGCTCTGACGAAAGTC+GGG + chr7_3:4033381-4033400 Msa1090230:intron 55.0%
GTGTGCGCTTCTACTGCCAA+TGG - chr7_3:4033573-4033592 None:intergenic 55.0%
ACGAAGGGAACGCCAAGAAC+TGG + chr7_3:4034057-4034076 Msa1090230:CDS 55.0%
CGAAGGGAACGCCAAGAACT+GGG + chr7_3:4034058-4034077 Msa1090230:CDS 55.0%
! TGCGGGAGCTTTAGTGCACT+TGG - chr7_3:4034628-4034647 None:intergenic 55.0%
AGGCTTTCACCGGCAAGGAA+AGG + chr7_3:4035912-4035931 Msa1090230:CDS 55.0%
GGCTTTCACCGGCAAGGAAA+GGG + chr7_3:4035913-4035932 Msa1090230:CDS 55.0%
GGAGAAGGGGGAATGGTGGT+GGG - chr7_3:4029601-4029620 None:intergenic 60.0%
AGGAGAAGGGGGAATGGTGG+TGG - chr7_3:4029602-4029621 None:intergenic 60.0%
GTGAGGAGAAGGGGGAATGG+TGG - chr7_3:4029605-4029624 None:intergenic 60.0%
ATCAGTGGTGGCCCTGAGCA+TGG - chr7_3:4030253-4030272 None:intergenic 60.0%
! GGGCCCACTGATCTGGAGTT+TGG + chr7_3:4031060-4031079 Msa1090230:intron 60.0%
TTCGTCAGAGCTGAGCAGGC+AGG - chr7_3:4033377-4033396 None:intergenic 60.0%
GGGAACGCCAAGAACTGGGA+TGG + chr7_3:4034062-4034081 Msa1090230:CDS 60.0%
ACTAAAGCTCCCGCAGACGC+AGG + chr7_3:4034633-4034652 Msa1090230:intron 60.0%
CTAAAGCTCCCGCAGACGCA+GGG + chr7_3:4034634-4034653 Msa1090230:intron 60.0%
! CAAATGGTGGGACCCCTTCC+TGG - chr7_3:4034661-4034680 None:intergenic 60.0%
GGTCTCGGGTTCGAGTCTTG+TGG - chr7_3:4035448-4035467 None:intergenic 60.0%
GATGGAACAGGCAGGAGGAC+AGG + chr7_3:4035892-4035911 Msa1090230:CDS 60.0%
GCAGGAGGACAGGCTTTCAC+CGG + chr7_3:4035902-4035921 Msa1090230:CDS 60.0%
AGGACAGGCTTTCACCGGCA+AGG + chr7_3:4035907-4035926 Msa1090230:CDS 60.0%
CACAAGCGGGCCCACTGATC+TGG + chr7_3:4031053-4031072 Msa1090230:intron 65.0%
TTCCTGGACCCTGCGTCTGC+GGG - chr7_3:4034645-4034664 None:intergenic 65.0%
CTTCCTGGACCCTGCGTCTG+CGG - chr7_3:4034646-4034665 None:intergenic 65.0%
GCAGACGCAGGGTCCAGGAA+GGG + chr7_3:4034645-4034664 Msa1090230:intron 65.0%
CAGACGCAGGGTCCAGGAAG+GGG + chr7_3:4034646-4034665 Msa1090230:intron 65.0%
CGCAGACGCAGGGTCCAGGA+AGG + chr7_3:4034644-4034663 Msa1090230:intron 70.0%
CTCCCGCAGACGCAGGGTCC+AGG + chr7_3:4034640-4034659 Msa1090230:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 4029583 4036929 4029583 ID=Msa1090230;Name=Msa1090230
chr7_3 mRNA 4029583 4036929 4029583 ID=Msa1090230-mRNA-1;Parent=Msa1090230;Name=Msa1090230-mRNA-1;_AED=0.14;_eAED=0.14;_QI=426|0.81|0.75|1|0.81|0.75|12|220|318
chr7_3 exon 4029583 4030167 4029583 ID=Msa1090230-mRNA-1:exon:1526;Parent=Msa1090230-mRNA-1
chr7_3 exon 4031456 4031503 4031456 ID=Msa1090230-mRNA-1:exon:1527;Parent=Msa1090230-mRNA-1
chr7_3 exon 4032063 4032137 4032063 ID=Msa1090230-mRNA-1:exon:1528;Parent=Msa1090230-mRNA-1
chr7_3 exon 4032221 4032282 4032221 ID=Msa1090230-mRNA-1:exon:1529;Parent=Msa1090230-mRNA-1
chr7_3 exon 4032600 4032649 4032600 ID=Msa1090230-mRNA-1:exon:1530;Parent=Msa1090230-mRNA-1
chr7_3 exon 4033020 4033108 4033020 ID=Msa1090230-mRNA-1:exon:1531;Parent=Msa1090230-mRNA-1
chr7_3 exon 4033226 4033312 4033226 ID=Msa1090230-mRNA-1:exon:1532;Parent=Msa1090230-mRNA-1
chr7_3 exon 4034026 4034096 4034026 ID=Msa1090230-mRNA-1:exon:1533;Parent=Msa1090230-mRNA-1
chr7_3 exon 4034184 4034228 4034184 ID=Msa1090230-mRNA-1:exon:1534;Parent=Msa1090230-mRNA-1
chr7_3 exon 4035672 4035758 4035672 ID=Msa1090230-mRNA-1:exon:1535;Parent=Msa1090230-mRNA-1
chr7_3 exon 4035859 4035934 4035859 ID=Msa1090230-mRNA-1:exon:1536;Parent=Msa1090230-mRNA-1
chr7_3 exon 4036602 4036929 4036602 ID=Msa1090230-mRNA-1:exon:1537;Parent=Msa1090230-mRNA-1
chr7_3 five_prime_UTR 4029583 4030008 4029583 ID=Msa1090230-mRNA-1:five_prime_utr;Parent=Msa1090230-mRNA-1
chr7_3 CDS 4030009 4030167 4030009 ID=Msa1090230-mRNA-1:cds;Parent=Msa1090230-mRNA-1
chr7_3 CDS 4031456 4031503 4031456 ID=Msa1090230-mRNA-1:cds;Parent=Msa1090230-mRNA-1
chr7_3 CDS 4032063 4032137 4032063 ID=Msa1090230-mRNA-1:cds;Parent=Msa1090230-mRNA-1
chr7_3 CDS 4032221 4032282 4032221 ID=Msa1090230-mRNA-1:cds;Parent=Msa1090230-mRNA-1
chr7_3 CDS 4032600 4032649 4032600 ID=Msa1090230-mRNA-1:cds;Parent=Msa1090230-mRNA-1
chr7_3 CDS 4033020 4033108 4033020 ID=Msa1090230-mRNA-1:cds;Parent=Msa1090230-mRNA-1
chr7_3 CDS 4033226 4033312 4033226 ID=Msa1090230-mRNA-1:cds;Parent=Msa1090230-mRNA-1
chr7_3 CDS 4034026 4034096 4034026 ID=Msa1090230-mRNA-1:cds;Parent=Msa1090230-mRNA-1
chr7_3 CDS 4034184 4034228 4034184 ID=Msa1090230-mRNA-1:cds;Parent=Msa1090230-mRNA-1
chr7_3 CDS 4035672 4035758 4035672 ID=Msa1090230-mRNA-1:cds;Parent=Msa1090230-mRNA-1
chr7_3 CDS 4035859 4035934 4035859 ID=Msa1090230-mRNA-1:cds;Parent=Msa1090230-mRNA-1
chr7_3 CDS 4036602 4036709 4036602 ID=Msa1090230-mRNA-1:cds;Parent=Msa1090230-mRNA-1
chr7_3 three_prime_UTR 4036710 4036929 4036710 ID=Msa1090230-mRNA-1:three_prime_utr;Parent=Msa1090230-mRNA-1
Gene Sequence

>Msa1090230

ATGGACCACAGCGCAGATGCACATCGTACAGACTTGATGACCATAACACGTTTTGTGTTGAATGAACAGTCTAAGCATCCTGAATCACGTGGAGATTTTACCATCTTGCTTAATAACATTGTTCTTGGTTGCAAATTTGTTTGTTCTGCTGTTAACAAGGCTGGTCTTGCAAAGCTCATTGGACTTGCAGGAGAGACCAATGTTCAGGGTGAAGAGCAGAAGAAGCTTGATGTTCTTTCCAATGAGGTGTTCTGCAAGGCTTTGATAAGCAGTGGCAGAACATGCATCTTGGTTTCTGAAGAAGATGAGGATGCAATATTTGTGGATCCTAAGCAGCGTGGAAAGTACTGTGTTGTTTTTGATCCATTAGACGGCTCCTCCAACATTGATTGTGATAACCATGAACCAATCATAGATGATGTTCTGCAACCAGGGAAGAACATGTTAGCAGCTGGTTATTGCATGTACGGAAGCTCTTGCACGTTTGTGATAACCACTGGAAGTGGTGTTAATGGTTTCACTCTCGACCCTTCTCTTGGCGAGTTTATCCTAACTCACCCTGACATTAAGATCCCAAAGAAAGGCAAGATTTATTCGGTGAACGAAGGGAACGCCAAGAACTGGGATGGTCCTACTGCTGCTTATGTGGAGAAATGCAAGTTTCCAACAGATGGTTCACCAGCAAACATGGTAGCTGATGTTCATCGTACATTGCTATATGGAGGTACCTTTTTGTACCCTGCTGACAAAAAGAGTCCAAATGGAAAACTTCGTGTATTGTATGAAGTCTTCCCAATGTCCTTCTTGATGGAACAGGCAGGAGGACAGGCTTTCACCGGCAAGGAAAGGGCACTTGATTTAGTTCCAACAAAATTGCATGAAAGATCTCCCATATTTCTTGGTAGCTATGATGATATCGAGGAAATCAAAGCTCTTTATGCTGCAGAGGCTAAATAA

Protein sequence

>Msa1090230

MDHSADAHRTDLMTITRFVLNEQSKHPESRGDFTILLNNIVLGCKFVCSAVNKAGLAKLIGLAGETNVQGEEQKKLDVLSNEVFCKALISSGRTCILVSEEDEDAIFVDPKQRGKYCVVFDPLDGSSNIDCDNHEPIIDDVLQPGKNMLAAGYCMYGSSCTFVITTGSGVNGFTLDPSLGEFILTHPDIKIPKKGKIYSVNEGNAKNWDGPTAAYVEKCKFPTDGSPANMVADVHRTLLYGGTFLYPADKKSPNGKLRVLYEVFPMSFLMEQAGGQAFTGKERALDLVPTKLHERSPIFLGSYDDIEEIKALYAAEAK*