Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1302000 | sp|Q9M8K5|HIP32_ARATH | 51.736 | 288 | 94 | 9 | 1 | 276 | 1 | 255 | 4.58e-44 | 165 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1302000 | A0A072USX2 | 85.526 | 532 | 47 | 10 | 1 | 522 | 1 | 512 | 4.62e-140 | 423 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0014770 | Msa1302000 | 0.826495 | 2.628656e-54 | -8.615850e-47 |
Msa0025160 | Msa1302000 | 0.802096 | 6.596609e-49 | -8.615850e-47 |
Msa0072520 | Msa1302000 | 0.813858 | 2.069324e-51 | -8.615850e-47 |
Msa0108630 | Msa1302000 | 0.805788 | 1.127189e-49 | -8.615850e-47 |
Msa0706150 | Msa1302000 | 0.801574 | 8.444137e-49 | -8.615850e-47 |
Msa1301980 | Msa1302000 | 0.859578 | 3.754793e-63 | -8.615850e-47 |
Msa1302000 | Msa1303880 | 0.820673 | 6.056150e-53 | -8.615850e-47 |
Msa1302000 | Msa1333500 | 0.835744 | 1.403869e-56 | -8.615850e-47 |
Msa1302000 | Msa1408160 | 0.811913 | 5.519621e-51 | -8.615850e-47 |
Msa1302000 | Msa1410160 | 0.827238 | 1.746617e-54 | -8.615850e-47 |
Msa1302000 | Msa1448960 | 0.808872 | 2.501234e-50 | -8.615850e-47 |
Msa1042160 | Msa1302000 | 0.802134 | 6.480214e-49 | -8.615850e-47 |
Msa1166190 | Msa1302000 | 0.823646 | 1.238167e-53 | -8.615850e-47 |
Msa1166290 | Msa1302000 | 0.818667 | 1.739037e-52 | -8.615850e-47 |
Msa1167470 | Msa1302000 | 0.807822 | 4.188954e-50 | -8.615850e-47 |
Msa1216090 | Msa1302000 | 0.864555 | 1.117488e-64 | -8.615850e-47 |
Msa1216110 | Msa1302000 | 0.835097 | 2.045863e-56 | -8.615850e-47 |
Msa1216340 | Msa1302000 | 0.859446 | 4.113634e-63 | -8.615850e-47 |
Msa0580940 | Msa1302000 | 0.804154 | 2.474811e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1302000 | MtrunA17_Chr4g0065651 | 85.526 | 532 | 47 | 10 | 1 | 522 | 1 | 512 | 8.89e-144 | 423 |
Msa1302000 | MtrunA17_Chr0c22g0493881 | 81.510 | 384 | 49 | 7 | 1 | 380 | 1 | 366 | 6.92e-93 | 288 |
Msa1302000 | MtrunA17_Chr4g0065621 | 86.275 | 306 | 27 | 5 | 1 | 306 | 1 | 291 | 5.95e-87 | 273 |
Msa1302000 | MtrunA17_Chr2g0287751 | 64.865 | 259 | 65 | 10 | 1 | 255 | 1 | 237 | 7.93e-56 | 194 |
Msa1302000 | MtrunA17_Chr2g0287741 | 48.885 | 538 | 181 | 23 | 10 | 522 | 15 | 483 | 5.00e-46 | 169 |
Msa1302000 | MtrunA17_Chr4g0065611 | 85.714 | 133 | 13 | 3 | 394 | 522 | 12 | 142 | 4.78e-37 | 134 |
Msa1302000 | MtrunA17_Chr0c22g0493871 | 86.364 | 132 | 12 | 3 | 395 | 522 | 1 | 130 | 5.67e-37 | 133 |
Msa1302000 | MtrunA17_Chr1g0208301 | 70.513 | 78 | 20 | 1 | 1 | 75 | 1 | 78 | 6.76e-30 | 120 |
Msa1302000 | MtrunA17_Chr4g0067291 | 50.000 | 114 | 41 | 3 | 7 | 120 | 71 | 168 | 1.74e-24 | 104 |
Msa1302000 | MtrunA17_Chr7g0269081 | 67.143 | 70 | 23 | 0 | 5 | 74 | 17 | 86 | 2.49e-24 | 103 |
Msa1302000 | MtrunA17_Chr3g0111541 | 53.521 | 71 | 33 | 0 | 3 | 73 | 5 | 75 | 3.69e-19 | 86.3 |
Msa1302000 | MtrunA17_Chr1g0192131 | 57.333 | 75 | 31 | 1 | 4 | 77 | 9 | 83 | 5.15e-19 | 89.4 |
Msa1302000 | MtrunA17_Chr7g0272571 | 53.521 | 71 | 33 | 0 | 9 | 79 | 32 | 102 | 1.39e-18 | 87.4 |
Msa1302000 | MtrunA17_Chr2g0296001 | 60.294 | 68 | 27 | 0 | 7 | 74 | 70 | 137 | 4.69e-17 | 82.8 |
Msa1302000 | MtrunA17_Chr1g0198341 | 39.189 | 74 | 45 | 0 | 10 | 83 | 4 | 77 | 2.14e-13 | 65.5 |
Msa1302000 | MtrunA17_Chr8g0382721 | 52.459 | 61 | 29 | 0 | 14 | 74 | 33 | 93 | 8.55e-13 | 66.2 |
Msa1302000 | MtrunA17_Chr2g0285561 | 32.283 | 127 | 77 | 3 | 8 | 125 | 6 | 132 | 2.12e-12 | 67.8 |
Msa1302000 | MtrunA17_Chr1g0160201 | 45.902 | 61 | 33 | 0 | 14 | 74 | 29 | 89 | 2.22e-12 | 64.7 |
Msa1302000 | MtrunA17_Chr3g0124411 | 47.761 | 67 | 35 | 0 | 8 | 74 | 28 | 94 | 2.73e-12 | 64.7 |
Msa1302000 | MtrunA17_Chr2g0325601 | 42.254 | 71 | 41 | 0 | 14 | 84 | 6 | 76 | 4.58e-12 | 63.9 |
Msa1302000 | MtrunA17_Chr1g0189221 | 38.356 | 73 | 45 | 0 | 7 | 79 | 50 | 122 | 4.71e-12 | 64.7 |
Msa1302000 | MtrunA17_Chr7g0251491 | 33.654 | 104 | 62 | 3 | 2 | 98 | 40 | 143 | 7.28e-12 | 63.9 |
Msa1302000 | MtrunA17_Chr4g0028461 | 48.276 | 87 | 43 | 2 | 12 | 96 | 68 | 154 | 1.01e-11 | 66.2 |
Msa1302000 | MtrunA17_Chr7g0218981 | 37.037 | 81 | 51 | 0 | 13 | 93 | 7 | 87 | 1.32e-11 | 62.0 |
Msa1302000 | MtrunA17_Chr5g0407821 | 37.179 | 78 | 49 | 0 | 3 | 80 | 16 | 93 | 1.79e-11 | 62.4 |
Msa1302000 | MtrunA17_Chr5g0404641 | 41.176 | 68 | 40 | 0 | 9 | 76 | 2 | 69 | 5.73e-11 | 61.2 |
Msa1302000 | MtrunA17_Chr4g0050571 | 45.455 | 66 | 35 | 1 | 10 | 75 | 101 | 165 | 9.38e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1302000 | AT3G06130.2 | 51.736 | 288 | 94 | 9 | 1 | 276 | 1 | 255 | 2.45e-46 | 166 |
Msa1302000 | AT3G06130.1 | 51.736 | 288 | 94 | 9 | 1 | 276 | 1 | 255 | 4.66e-45 | 165 |
Msa1302000 | AT5G19090.2 | 77.228 | 101 | 23 | 0 | 1 | 101 | 1 | 101 | 1.19e-43 | 161 |
Msa1302000 | AT5G19090.3 | 77.228 | 101 | 23 | 0 | 1 | 101 | 1 | 101 | 1.19e-43 | 161 |
Msa1302000 | AT5G19090.5 | 70.000 | 120 | 27 | 1 | 1 | 111 | 1 | 120 | 7.79e-43 | 161 |
Msa1302000 | AT5G19090.4 | 70.000 | 120 | 27 | 1 | 1 | 111 | 1 | 120 | 7.79e-43 | 161 |
Msa1302000 | AT5G19090.1 | 70.000 | 120 | 27 | 1 | 1 | 111 | 1 | 120 | 7.79e-43 | 161 |
Msa1302000 | AT3G05220.1 | 63.514 | 74 | 27 | 0 | 1 | 74 | 1 | 74 | 2.07e-26 | 113 |
Msa1302000 | AT5G27690.1 | 52.475 | 101 | 43 | 1 | 5 | 105 | 25 | 120 | 2.93e-26 | 110 |
Msa1302000 | AT1G23000.1 | 61.628 | 86 | 29 | 2 | 1 | 83 | 1 | 85 | 7.78e-26 | 109 |
Msa1302000 | AT1G23000.2 | 61.628 | 86 | 29 | 2 | 1 | 83 | 61 | 145 | 2.20e-25 | 108 |
Msa1302000 | AT5G37860.1 | 54.412 | 68 | 31 | 0 | 9 | 76 | 9 | 76 | 2.63e-19 | 88.2 |
Msa1302000 | AT1G56210.1 | 54.667 | 75 | 33 | 1 | 10 | 83 | 40 | 114 | 1.12e-18 | 88.2 |
Msa1302000 | AT1G06330.1 | 46.875 | 64 | 34 | 0 | 14 | 77 | 6 | 69 | 3.33e-13 | 67.8 |
Msa1302000 | AT1G66240.1 | 40.000 | 65 | 39 | 0 | 10 | 74 | 33 | 97 | 4.99e-12 | 63.2 |
Msa1302000 | AT4G10465.1 | 36.957 | 92 | 58 | 0 | 1 | 92 | 42 | 133 | 5.55e-12 | 65.1 |
Msa1302000 | AT3G56891.1 | 43.750 | 64 | 36 | 0 | 14 | 77 | 20 | 83 | 1.65e-11 | 63.2 |
Msa1302000 | AT3G02960.1 | 41.892 | 74 | 42 | 1 | 3 | 75 | 119 | 192 | 2.53e-11 | 64.3 |
Msa1302000 | AT3G56240.3 | 41.791 | 67 | 39 | 0 | 10 | 76 | 3 | 69 | 4.82e-11 | 60.8 |
Msa1302000 | AT3G56240.1 | 41.791 | 67 | 39 | 0 | 10 | 76 | 3 | 69 | 4.82e-11 | 60.8 |
Msa1302000 | AT4G23882.1 | 43.678 | 87 | 38 | 3 | 9 | 84 | 77 | 163 | 5.03e-11 | 63.9 |
Msa1302000 | AT1G71050.1 | 39.394 | 66 | 40 | 0 | 9 | 74 | 27 | 92 | 7.39e-11 | 60.8 |
Find 201 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTTATATGTGTTTATATTT+TGG | 0.061931 | 8_3:-64308435 | Msa1302000:three_prime_UTR |
CAAGGGAAGGTCACAGTTTC+AGG | 0.145406 | 8_3:-64310127 | Msa1302000:CDS |
CAAGATCTAGCTCAATTTAA+AGG | 0.182916 | 8_3:-64309776 | Msa1302000:CDS |
TACTATGTTAATTATGTTCT+TGG | 0.218147 | 8_3:-64308484 | Msa1302000:three_prime_UTR |
TGTTTGGTGTCTTTATTTAT+TGG | 0.221368 | 8_3:+64310869 | None:intergenic |
TAGGATTCTGATTCGGGTTC+TGG | 0.245506 | 8_3:+64309723 | None:intergenic |
GGATTCCCCTGCATCATTTC+CGG | 0.253390 | 8_3:+64308948 | None:intergenic |
AAGAGGCAAGTTTGAGAGTT+AGG | 0.278652 | 8_3:+64310776 | None:intergenic |
ACAACAACAGCAACAGTTAA+TGG | 0.289999 | 8_3:-64308901 | Msa1302000:CDS |
TATTGTTTCCACCACCCTTC+TGG | 0.290425 | 8_3:+64309909 | None:intergenic |
CATCTTTAGGATTCTGATTC+GGG | 0.295568 | 8_3:+64309717 | None:intergenic |
TTGTATTTGTTGACCACCTT+TGG | 0.297173 | 8_3:+64309880 | None:intergenic |
ATCAAGAAGCTTGCAAAATC+AGG | 0.297726 | 8_3:-64310082 | Msa1302000:CDS |
TTAACACCTTTAGCATCTTT+AGG | 0.299936 | 8_3:+64309704 | None:intergenic |
CCCTGCATCATTTCCGGTCC+TGG | 0.305122 | 8_3:+64308954 | None:intergenic |
AGCTTCTTGATGAGAACATT+TGG | 0.309355 | 8_3:+64310094 | None:intergenic |
TCAATCTCATCCTGGTAGTA+TGG | 0.312405 | 8_3:-64309099 | Msa1302000:CDS |
GTTACTTACTTTATTCCTAT+TGG | 0.313104 | 8_3:-64310585 | Msa1302000:five_prime_UTR |
CCATTCCCCATAGGCATAGA+AGG | 0.318053 | 8_3:+64309542 | None:intergenic |
CTTCTTTACTCATGACCAAT+AGG | 0.330043 | 8_3:+64310570 | None:intergenic |
TAAGGATCTGGAGGAGGATA+AGG | 0.339463 | 8_3:+64308765 | None:intergenic |
GCATCTTTAGGATTCTGATT+CGG | 0.340947 | 8_3:+64309716 | None:intergenic |
TCTGATTCGGGTTCTGGCCC+GGG | 0.343572 | 8_3:+64309729 | None:intergenic |
ACTGATTAACAACGTTGTTC+TGG | 0.344905 | 8_3:+64310005 | None:intergenic |
GGTGATTATAGATCTGAAAA+TGG | 0.348415 | 8_3:+64310644 | None:intergenic |
GGCGGAGGTGGAGGCGGTGG+TGG | 0.350490 | 8_3:-64309179 | Msa1302000:CDS |
TTCTGATTCGGGTTCTGGCC+CGG | 0.355308 | 8_3:+64309728 | None:intergenic |
GAAATCAATGTTATTGAGAA+TGG | 0.356396 | 8_3:-64308381 | Msa1302000:three_prime_UTR |
GGGTGGTGGAGGAAATAATA+TGG | 0.357181 | 8_3:-64309078 | Msa1302000:CDS |
TTACCACCCATTCGGTTCAT+AGG | 0.360924 | 8_3:+64309041 | None:intergenic |
TTCTATAAACTACTCCTCTA+TGG | 0.368659 | 8_3:+64308523 | None:intergenic |
CTAAAATCATCCTCATCTTC+AGG | 0.371343 | 8_3:+64309671 | None:intergenic |
GGTGGCGGAGGTGGAGGCGG+TGG | 0.373427 | 8_3:-64309182 | Msa1302000:CDS |
TGAAATGAAATGAGAATAGA+AGG | 0.374304 | 8_3:+64310712 | None:intergenic |
AAGGAAAAGAGAGAAATAAA+TGG | 0.382972 | 8_3:+64310731 | None:intergenic |
TACTTTCAAGGTGGTGGTGG+TGG | 0.384334 | 8_3:-64308978 | Msa1302000:CDS |
TAGTAGTCACTGAGAGAGAA+TGG | 0.385371 | 8_3:+64310820 | None:intergenic |
AAGAAAGGTGGTGGTGGTGG+TGG | 0.386759 | 8_3:-64309353 | Msa1302000:CDS |
GAGAAATGAGCAACCAGAGC+TGG | 0.388714 | 8_3:+64308344 | None:intergenic |
CCAAGAGTTTGCTCTATGTT+TGG | 0.388834 | 8_3:+64310853 | None:intergenic |
AATATATTGCATAAAATTAG+AGG | 0.390778 | 8_3:+64308632 | None:intergenic |
AATGGTGGTGGTGGCGGAAA+TGG | 0.397465 | 8_3:-64309455 | Msa1302000:CDS |
AACAAGAATGGAGGGAATAA+TGG | 0.397922 | 8_3:-64309254 | Msa1302000:CDS |
AGAGTTAGGAAGAGAGAGAA+TGG | 0.398540 | 8_3:+64310790 | None:intergenic |
CATCAAACAAACAATGTTCA+TGG | 0.400654 | 8_3:-64308691 | Msa1302000:three_prime_UTR |
CAGGGAAACATGCCGAGTTA+TGG | 0.402581 | 8_3:-64310063 | Msa1302000:CDS |
ACTTGTGATAAATAAAGATC+TGG | 0.404190 | 8_3:+64310606 | None:intergenic |
CCAATTGGTGGCGGAGGTGG+AGG | 0.411942 | 8_3:-64309188 | Msa1302000:CDS |
TGTATTTGTTGACCACCTTT+GGG | 0.413549 | 8_3:+64309881 | None:intergenic |
AGAAACCCCTTAAGATGAAA+AGG | 0.415613 | 8_3:+64308551 | None:intergenic |
CAGAAACCTGGTGGTGGTGG+TGG | 0.418442 | 8_3:-64309431 | Msa1302000:CDS |
AATGTTCAGGCTATGAATAA+TGG | 0.423799 | 8_3:-64309155 | Msa1302000:CDS |
GCTTCTTGATGAGAACATTT+GGG | 0.423822 | 8_3:+64310095 | None:intergenic |
CACGGCATGAATGGTGGAAA+TGG | 0.424726 | 8_3:-64309386 | Msa1302000:CDS |
AAAATCTTACAGAAAATTGA+TGG | 0.430085 | 8_3:-64310338 | Msa1302000:intron |
ATGATGGGTGGTGGAGGTGG+TGG | 0.432564 | 8_3:-64309122 | Msa1302000:CDS |
AAAATGATGGGTGGTGGAGG+TGG | 0.436665 | 8_3:-64309125 | Msa1302000:CDS |
GGTAACATTCCTGCTGTTCA+AGG | 0.436866 | 8_3:-64309023 | Msa1302000:CDS |
AGGCGGTGGTGGTAATGTTC+AGG | 0.438058 | 8_3:-64309168 | Msa1302000:CDS |
GGTTACTTTCAAGGTGGTGG+TGG | 0.439749 | 8_3:-64308981 | Msa1302000:CDS |
CCTCCACCTCCGCCACCAAT+TGG | 0.440018 | 8_3:+64309188 | None:intergenic |
TTCATGCCGTGAATTTGAAC+CGG | 0.440785 | 8_3:+64309398 | None:intergenic |
GGAAAGAAAGGTGGTGGTGG+TGG | 0.445640 | 8_3:-64309356 | Msa1302000:CDS |
ACTATGTTAATTATGTTCTT+GGG | 0.449339 | 8_3:-64308483 | Msa1302000:three_prime_UTR |
ATTGGTGGCGGAGGTGGAGG+CGG | 0.453929 | 8_3:-64309185 | Msa1302000:CDS |
ATACCAATTGGTGGCGGAGG+TGG | 0.457299 | 8_3:-64309191 | Msa1302000:CDS |
CCTTCTATGCCTATGGGGAA+TGG | 0.458052 | 8_3:-64309542 | Msa1302000:CDS |
TGATGAGTTTGATGATGAAA+TGG | 0.461887 | 8_3:-64309594 | Msa1302000:CDS |
AACAACTTCAACAGATGAAA+GGG | 0.462139 | 8_3:-64309802 | Msa1302000:CDS |
CGGTTCATAGGCATACTCAT+TGG | 0.463995 | 8_3:+64309053 | None:intergenic |
ACAGCTTATGAGTGCTATGA+AGG | 0.465021 | 8_3:-64309489 | Msa1302000:CDS |
TTAGGAAGAGAGAGAATGGT+GGG | 0.466008 | 8_3:+64310794 | None:intergenic |
AAGGATCTGGAGGAGGATAA+GGG | 0.466318 | 8_3:+64308766 | None:intergenic |
GGTCTACCGGCAGGCGGAGG+AGG | 0.468185 | 8_3:-64309002 | Msa1302000:CDS |
AAAGCATGTGAGTAAGGATC+TGG | 0.469198 | 8_3:+64308753 | None:intergenic |
TGGTGGTGGTGGTCCAGGAC+CGG | 0.469917 | 8_3:-64308967 | Msa1302000:CDS |
AAGAGTCTCTGAAACATAAG+AGG | 0.472199 | 8_3:+64310759 | None:intergenic |
AAATCAATGTTATTGAGAAT+GGG | 0.477281 | 8_3:-64308380 | Msa1302000:three_prime_UTR |
GAAACCCCTTAAGATGAAAA+GGG | 0.479165 | 8_3:+64308552 | None:intergenic |
TCCAGGACCGGAAATGATGC+AGG | 0.480211 | 8_3:-64308955 | Msa1302000:CDS |
GGCGGAGGAGGTTACTTTCA+AGG | 0.482444 | 8_3:-64308990 | Msa1302000:CDS |
ATTGACAATGGCAAAGGTGG+TGG | 0.482824 | 8_3:-64309968 | Msa1302000:CDS |
AGTAGTCACTGAGAGAGAAT+GGG | 0.484635 | 8_3:+64310821 | None:intergenic |
CCAAACATAGAGCAAACTCT+TGG | 0.488925 | 8_3:-64310853 | Msa1302000:five_prime_UTR |
CAATCTCATCCTGGTAGTAT+GGG | 0.490190 | 8_3:-64309098 | Msa1302000:CDS |
TGGTGGTGGAGGACCTGTGC+CGG | 0.493420 | 8_3:-64309417 | Msa1302000:CDS |
TCGCTGAAAGCATGTGAGTA+AGG | 0.494235 | 8_3:+64308747 | None:intergenic |
AAGGGTATGTCGATACCAAT+TGG | 0.495826 | 8_3:-64309203 | Msa1302000:CDS |
ATGAAAGAAATTCCCAGCTC+TGG | 0.499167 | 8_3:-64308357 | Msa1302000:three_prime_UTR |
TCCTGCTGTTCAAGGTCTAC+CGG | 0.501026 | 8_3:-64309015 | Msa1302000:CDS |
GCCGGTAGACCTTGAACAGC+AGG | 0.503563 | 8_3:+64309014 | None:intergenic |
GGTGGCCTTGCATACATCAT+TGG | 0.504586 | 8_3:+64308819 | None:intergenic |
TCTGGAGGAGGATAAGGGTA+AGG | 0.506412 | 8_3:+64308771 | None:intergenic |
CATCCTGGTAGTATGGGTGG+TGG | 0.513520 | 8_3:-64309092 | Msa1302000:CDS |
GTTCAAATTCACGGCATGAA+TGG | 0.514493 | 8_3:-64309395 | Msa1302000:CDS |
CCGTGAATTTGAACCGGCAC+AGG | 0.516132 | 8_3:+64309404 | None:intergenic |
GGAGGTTACTTTCAAGGTGG+TGG | 0.516276 | 8_3:-64308984 | Msa1302000:CDS |
GGTGGTGGAGGAAATAATAT+GGG | 0.517548 | 8_3:-64309077 | Msa1302000:CDS |
AAGTAACCTCCTCCGCCTGC+CGG | 0.520732 | 8_3:+64308996 | None:intergenic |
GTAGTAATCAAAATAACGAT+GGG | 0.520911 | 8_3:-64309232 | Msa1302000:CDS |
CAGAATCCTAAAGATGCTAA+AGG | 0.521196 | 8_3:-64309710 | Msa1302000:CDS |
AATCAAAACCAGAAGGGTGG+TGG | 0.522342 | 8_3:-64309917 | Msa1302000:CDS |
GGAGGAAAGAAAGGTGGTGG+TGG | 0.522847 | 8_3:-64309359 | Msa1302000:CDS |
CAGGAATGTTACCACCCATT+CGG | 0.525275 | 8_3:+64309033 | None:intergenic |
GGTGCTCACATGATGTTGAA+TGG | 0.526053 | 8_3:-64309521 | Msa1302000:CDS |
CAACAACTTCAACAGATGAA+AGG | 0.526664 | 8_3:-64309803 | Msa1302000:CDS |
GTTAGGAAGAGAGAGAATGG+TGG | 0.526762 | 8_3:+64310793 | None:intergenic |
CAAGGTCTACCGGCAGGCGG+AGG | 0.530336 | 8_3:-64309005 | Msa1302000:CDS |
ATGTAATTCACCTCAGGAGG+TGG | 0.534211 | 8_3:+64308801 | None:intergenic |
AATGGCAATGGAGGAAAGAA+AGG | 0.535264 | 8_3:-64309368 | Msa1302000:CDS |
CCTGGTAGTATGGGTGGTGG+AGG | 0.540462 | 8_3:-64309089 | Msa1302000:CDS |
GTGCTCACATGATGTTGAAT+GGG | 0.541270 | 8_3:-64309520 | Msa1302000:CDS |
TCATTGGCTGCTGAAATCTC+TGG | 0.541514 | 8_3:+64308835 | None:intergenic |
ATTGCATAAAATTAGAGGAT+AGG | 0.542139 | 8_3:+64308637 | None:intergenic |
GCTGTTCAAGGTCTACCGGC+AGG | 0.542942 | 8_3:-64309011 | Msa1302000:CDS |
GGACAGAAACCTGGTGGTGG+TGG | 0.543498 | 8_3:-64309434 | Msa1302000:CDS |
CCTGTGCCGGTTCAAATTCA+CGG | 0.544320 | 8_3:-64309404 | Msa1302000:CDS |
GAATCACATGACATTGCAGC+TGG | 0.546046 | 8_3:+64308713 | None:intergenic |
GGAGGAGGATAAGGGTAAGG+AGG | 0.547967 | 8_3:+64308774 | None:intergenic |
CTTGTGATAAATAAAGATCT+GGG | 0.548351 | 8_3:+64310607 | None:intergenic |
CCTCCACCACCCATACTACC+AGG | 0.550212 | 8_3:+64309089 | None:intergenic |
TCAAGAAGCTTGCAAAATCA+GGG | 0.551852 | 8_3:-64310081 | Msa1302000:CDS |
GGCGGAAATGGACAGAAACC+TGG | 0.552019 | 8_3:-64309443 | Msa1302000:CDS |
TCGATACCAATTGGTGGCGG+AGG | 0.554646 | 8_3:-64309194 | Msa1302000:CDS |
GATGCCGCTGAATCAGCACC+CGG | 0.559535 | 8_3:-64309747 | Msa1302000:CDS |
GGTGGTGGTCAATCTCATCC+TGG | 0.561328 | 8_3:-64309107 | Msa1302000:CDS |
GATGAATCAACGTGCTGCTA+TGG | 0.564311 | 8_3:-64308868 | Msa1302000:CDS |
AGAAATGAGCAACCAGAGCT+GGG | 0.565461 | 8_3:+64308345 | None:intergenic |
CAAATTCACGGCATGAATGG+TGG | 0.565701 | 8_3:-64309392 | Msa1302000:CDS |
GGAGGGAATAATCAGAATCA+AGG | 0.567228 | 8_3:-64309332 | Msa1302000:CDS |
TGAAGTTGTTGCTGCTGCTG+AGG | 0.567794 | 8_3:+64309842 | None:intergenic |
AATGGCGGTGGAAACAAGAA+TGG | 0.567852 | 8_3:-64309266 | Msa1302000:CDS |
GGATACATGTAATTCACCTC+AGG | 0.568572 | 8_3:+64308795 | None:intergenic |
CATTCCCCATAGGCATAGAA+GGG | 0.572536 | 8_3:+64309543 | None:intergenic |
GAATCAACGTGCTGCTATGG+TGG | 0.576359 | 8_3:-64308865 | Msa1302000:CDS |
TTTGTTGACCACCTTTGGGT+TGG | 0.576873 | 8_3:+64309885 | None:intergenic |
ATGAATGGTGGAAATGGCAA+TGG | 0.579729 | 8_3:-64309380 | Msa1302000:CDS |
GAGTTTGATGATGAAATGGT+TGG | 0.582338 | 8_3:-64309590 | Msa1302000:CDS |
GGTAGTAATCAAAATAACGA+TGG | 0.583746 | 8_3:-64309233 | Msa1302000:CDS |
GGTCACAGTTTCAGGGAATG+TGG | 0.584262 | 8_3:-64310119 | Msa1302000:CDS |
AGCAGCCAATGATGTATGCA+AGG | 0.586173 | 8_3:-64308824 | Msa1302000:CDS |
ACAAACAATGTTCATGGTGA+TGG | 0.588045 | 8_3:-64308685 | Msa1302000:three_prime_UTR |
AAGGGAAGGTCACAGTTTCA+GGG | 0.589814 | 8_3:-64310126 | Msa1302000:CDS |
GGGGTTTCTAATTACCATAG+AGG | 0.591890 | 8_3:-64308537 | Msa1302000:three_prime_UTR |
AAATCAGAATCAAAACCAGA+AGG | 0.592384 | 8_3:-64309924 | Msa1302000:CDS |
TGGCCCGGGTGCTGATTCAG+CGG | 0.593907 | 8_3:+64309743 | None:intergenic |
GGTCCTCCACCACCACCACC+AGG | 0.597489 | 8_3:+64309425 | None:intergenic |
TTTGGGAACACTCCATAACT+CGG | 0.598490 | 8_3:+64310051 | None:intergenic |
ATTTGATGTGCCTGAAGATG+AGG | 0.599659 | 8_3:-64309681 | Msa1302000:CDS |
GGCAATGGAGGAAAGAAAGG+TGG | 0.603629 | 8_3:-64309365 | Msa1302000:CDS |
AATCAGAATCAAAACCAGAA+GGG | 0.603694 | 8_3:-64309923 | Msa1302000:CDS |
TGTGAGTAAGGATCTGGAGG+AGG | 0.603879 | 8_3:+64308759 | None:intergenic |
AACAATAACCAACCCAAAGG+TGG | 0.605261 | 8_3:-64309893 | Msa1302000:CDS |
AATAATCAGAATCAAGGTGG+AGG | 0.605707 | 8_3:-64309326 | Msa1302000:CDS |
CAATTGAAGTCACATGGCCA+CGG | 0.606226 | 8_3:-64310956 | None:intergenic |
AATGGAGGAAAGAAAGGTGG+TGG | 0.606743 | 8_3:-64309362 | Msa1302000:CDS |
AATGTTCATGGTGATGGTGA+TGG | 0.608623 | 8_3:-64308679 | Msa1302000:three_prime_UTR |
GGCGGTGGAAACAAGAATGG+AGG | 0.609460 | 8_3:-64309263 | Msa1302000:CDS |
CAAATTGACAATGGCAAAGG+TGG | 0.610618 | 8_3:-64309971 | Msa1302000:CDS |
TTCATAGCACTCATAAGCTG+TGG | 0.610940 | 8_3:+64309491 | None:intergenic |
ATGCAAATTGACAATGGCAA+AGG | 0.611165 | 8_3:-64309974 | Msa1302000:CDS |
TCTCATCCTGGTAGTATGGG+TGG | 0.611507 | 8_3:-64309095 | Msa1302000:CDS |
AATGAAGTCACTCACTTCTG+TGG | 0.611607 | 8_3:-64310906 | Msa1302000:five_prime_UTR |
AAAGTGAACATACACTGTGA+TGG | 0.617847 | 8_3:-64310380 | Msa1302000:CDS |
CCAGGACCGGAAATGATGCA+GGG | 0.618163 | 8_3:-64308954 | Msa1302000:CDS |
ATGTGAGCACCATTCCCCAT+AGG | 0.619841 | 8_3:+64309533 | None:intergenic |
AAACCCCTTAAGATGAAAAG+GGG | 0.621521 | 8_3:+64308553 | None:intergenic |
ACTGAGATAGATGCAGAACA+AGG | 0.622005 | 8_3:-64310145 | Msa1302000:CDS |
AGTATGCCTATGAACCGAAT+GGG | 0.622246 | 8_3:-64309047 | Msa1302000:CDS |
AAGAACATGCAAATTGACAA+TGG | 0.628311 | 8_3:-64309980 | Msa1302000:CDS |
GGTCAACAAATACAAATACA+AGG | 0.629935 | 8_3:-64309872 | Msa1302000:CDS |
ATGCCGCTGAATCAGCACCC+GGG | 0.631365 | 8_3:-64309746 | Msa1302000:CDS |
ATGTCGATACCAATTGGTGG+CGG | 0.631785 | 8_3:-64309197 | Msa1302000:CDS |
GTTCAAGGTCTACCGGCAGG+CGG | 0.633909 | 8_3:-64309008 | Msa1302000:CDS |
GCATGTGAGTAAGGATCTGG+AGG | 0.633919 | 8_3:+64308756 | None:intergenic |
GTAGTCACTGAGAGAGAATG+GGG | 0.633943 | 8_3:+64310822 | None:intergenic |
GGTATGTCGATACCAATTGG+TGG | 0.637679 | 8_3:-64309200 | Msa1302000:CDS |
CTTATGAGTGCTATGAAGGG+TGG | 0.638762 | 8_3:-64309485 | Msa1302000:CDS |
TACATGTAATTCACCTCAGG+AGG | 0.640426 | 8_3:+64308798 | None:intergenic |
GATAGATGCAGAACAAGGGA+AGG | 0.641999 | 8_3:-64310140 | Msa1302000:CDS |
CAGCTTATGAGTGCTATGAA+GGG | 0.642847 | 8_3:-64309488 | Msa1302000:CDS |
GCGGTGGAAACAAGAATGGA+GGG | 0.646163 | 8_3:-64309262 | Msa1302000:CDS |
TAGTAATCAAAATAACGATG+GGG | 0.650397 | 8_3:-64309231 | Msa1302000:CDS |
ATGCCTATGAACCGAATGGG+TGG | 0.650716 | 8_3:-64309044 | Msa1302000:CDS |
GAGTATGCCTATGAACCGAA+TGG | 0.653536 | 8_3:-64309048 | Msa1302000:CDS |
AATGGACAGAAACCTGGTGG+TGG | 0.653878 | 8_3:-64309437 | Msa1302000:CDS |
AGTAATCAAAATAACGATGG+GGG | 0.662461 | 8_3:-64309230 | Msa1302000:CDS |
CAGAATCAAAACCAGAAGGG+TGG | 0.662734 | 8_3:-64309920 | Msa1302000:CDS |
AATGGTGGAAATGGCAATGG+AGG | 0.665518 | 8_3:-64309377 | Msa1302000:CDS |
CTGAGATAGATGCAGAACAA+GGG | 0.666808 | 8_3:-64310144 | Msa1302000:CDS |
CAGGACCGGAAATGATGCAG+GGG | 0.670762 | 8_3:-64308953 | Msa1302000:CDS |
ATTCCCCATAGGCATAGAAG+GGG | 0.672578 | 8_3:+64309544 | None:intergenic |
AAAGGTGGTGGAAACAACAA+AGG | 0.677851 | 8_3:-64309956 | Msa1302000:CDS |
GGGAATAATCAGAATCAAGG+TGG | 0.678494 | 8_3:-64309329 | Msa1302000:CDS |
GGAAACAATAACCAACCCAA+AGG | 0.682874 | 8_3:-64309896 | Msa1302000:CDS |
GTATGCAAGGCCACCTCCTG+AGG | 0.686248 | 8_3:-64308811 | Msa1302000:CDS |
AACCCCTTAAGATGAAAAGG+GGG | 0.692080 | 8_3:+64308554 | None:intergenic |
TTCCCCATAGGCATAGAAGG+GGG | 0.698362 | 8_3:+64309545 | None:intergenic |
GTGGTGGAGGAAATAATATG+GGG | 0.726893 | 8_3:-64309076 | Msa1302000:CDS |
GGAAATGGACAGAAACCTGG+TGG | 0.762212 | 8_3:-64309440 | Msa1302000:CDS |
GGAGGAGGTTACTTTCAAGG+TGG | 0.764262 | 8_3:-64308987 | Msa1302000:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTATTTTGATTATTGTT+TGG | + | chr8_3:64309226-64309245 | None:intergenic | 10.0% |
!!! | TTTATATGTGTTTATATTTT+GGG | - | chr8_3:64310817-64310836 | Msa1302000:five_prime_UTR | 10.0% |
!! | AATATATTGCATAAAATTAG+AGG | + | chr8_3:64310622-64310641 | None:intergenic | 15.0% |
!!! | GTTTATATGTGTTTATATTT+TGG | - | chr8_3:64310816-64310835 | Msa1302000:five_prime_UTR | 15.0% |
!! | GCAAAAAAAATAAAGAAAGA+TGG | + | chr8_3:64308746-64308765 | None:intergenic | 20.0% |
!! | AAAATCTTACAGAAAATTGA+TGG | - | chr8_3:64308913-64308932 | Msa1302000:CDS | 20.0% |
!!! | TTTTGATTATTGTTTGGTTT+GGG | + | chr8_3:64309220-64309239 | None:intergenic | 20.0% |
!!! | ATTTTGATTATTGTTTGGTT+TGG | + | chr8_3:64309221-64309240 | None:intergenic | 20.0% |
!!! | TAATGGATTTCAAAAAATGA+TGG | - | chr8_3:64310113-64310132 | Msa1302000:CDS | 20.0% |
!!! | AATGGATTTCAAAAAATGAT+GGG | - | chr8_3:64310114-64310133 | Msa1302000:CDS | 20.0% |
!! | TACTATGTTAATTATGTTCT+TGG | - | chr8_3:64310767-64310786 | Msa1302000:five_prime_UTR | 20.0% |
!! | ACTATGTTAATTATGTTCTT+GGG | - | chr8_3:64310768-64310787 | Msa1302000:five_prime_UTR | 20.0% |
!! | AAATCAATGTTATTGAGAAT+GGG | - | chr8_3:64310871-64310890 | Msa1302000:five_prime_UTR | 20.0% |
!!! | TGTTTGGTGTCTTTATTTAT+TGG | + | chr8_3:64308385-64308404 | None:intergenic | 25.0% |
! | AAGGAAAAGAGAGAAATAAA+TGG | + | chr8_3:64308523-64308542 | None:intergenic | 25.0% |
! | TGAAATGAAATGAGAATAGA+AGG | + | chr8_3:64308542-64308561 | None:intergenic | 25.0% |
!!! | TTGTTTGGTTGAGTTTTATT+TGG | + | chr8_3:64308573-64308592 | None:intergenic | 25.0% |
!! | GAGTATTTTATGTTCTTGTT+TGG | + | chr8_3:64308588-64308607 | None:intergenic | 25.0% |
! | CTTGTGATAAATAAAGATCT+GGG | + | chr8_3:64308647-64308666 | None:intergenic | 25.0% |
! | ACTTGTGATAAATAAAGATC+TGG | + | chr8_3:64308648-64308667 | None:intergenic | 25.0% |
! | GTTACTTACTTTATTCCTAT+TGG | - | chr8_3:64308666-64308685 | Msa1302000:three_prime_UTR | 25.0% |
!!! | AGAAGAATTTTTGAAGATAC+AGG | - | chr8_3:64308699-64308718 | Msa1302000:exon | 25.0% |
!! | CTTAAATTAAGCTTCTGTTT+TGG | + | chr8_3:64309031-64309050 | None:intergenic | 25.0% |
!!! | TGATTTTAGTGATGATGAAA+TGG | - | chr8_3:64309594-64309613 | Msa1302000:CDS | 25.0% |
! | GTAGTAATCAAAATAACGAT+GGG | - | chr8_3:64310019-64310038 | Msa1302000:CDS | 25.0% |
! | TAGTAATCAAAATAACGATG+GGG | - | chr8_3:64310020-64310039 | Msa1302000:CDS | 25.0% |
! | ATTGCATAAAATTAGAGGAT+AGG | + | chr8_3:64310617-64310636 | None:intergenic | 25.0% |
! | TAAAAAACTCATGTTTCACT+GGG | + | chr8_3:64310648-64310667 | None:intergenic | 25.0% |
! | GAAATCAATGTTATTGAGAA+TGG | - | chr8_3:64310870-64310889 | Msa1302000:five_prime_UTR | 25.0% |
!!! | TTTTTTCAGCAATTTAACCG+TGG | + | chr8_3:64308315-64308334 | None:intergenic | 30.0% |
GGTGATTATAGATCTGAAAA+TGG | + | chr8_3:64308610-64308629 | None:intergenic | 30.0% | |
TTCTGCATACACAAATAACA+AGG | + | chr8_3:64308841-64308860 | None:intergenic | 30.0% | |
!! | TGTGTTGATTAATGAATGAC+AGG | - | chr8_3:64309073-64309092 | Msa1302000:CDS | 30.0% |
AAGAACATGCAAATTGACAA+TGG | - | chr8_3:64309271-64309290 | Msa1302000:CDS | 30.0% | |
AAATCAGAATCAAAACCAGA+AGG | - | chr8_3:64309327-64309346 | Msa1302000:CDS | 30.0% | |
AATCAGAATCAAAACCAGAA+GGG | - | chr8_3:64309328-64309347 | Msa1302000:CDS | 30.0% | |
GGTCAACAAATACAAATACA+AGG | - | chr8_3:64309379-64309398 | Msa1302000:CDS | 30.0% | |
AACAACTTCAACAGATGAAA+GGG | - | chr8_3:64309449-64309468 | Msa1302000:CDS | 30.0% | |
! | CAAGATCTAGCTCAATTTAA+AGG | - | chr8_3:64309475-64309494 | Msa1302000:CDS | 30.0% |
TTAACACCTTTAGCATCTTT+AGG | + | chr8_3:64309550-64309569 | None:intergenic | 30.0% | |
!! | TGATGAGTTTGATGATGAAA+TGG | - | chr8_3:64309657-64309676 | Msa1302000:CDS | 30.0% |
ATGCCAGAAGCTAAAAATAA+TGG | - | chr8_3:64309967-64309986 | Msa1302000:CDS | 30.0% | |
GGTAGTAATCAAAATAACGA+TGG | - | chr8_3:64310018-64310037 | Msa1302000:CDS | 30.0% | |
AGTAATCAAAATAACGATGG+GGG | - | chr8_3:64310021-64310040 | Msa1302000:CDS | 30.0% | |
AATGTTCAGGCTATGAATAA+TGG | - | chr8_3:64310096-64310115 | Msa1302000:CDS | 30.0% | |
CATCAAACAAACAATGTTCA+TGG | - | chr8_3:64310560-64310579 | Msa1302000:CDS | 30.0% | |
CTAAAAAACTCATGTTTCAC+TGG | + | chr8_3:64310649-64310668 | None:intergenic | 30.0% | |
TTCTATAAACTACTCCTCTA+TGG | + | chr8_3:64310731-64310750 | None:intergenic | 30.0% | |
!! | AAGAGTCTCTGAAACATAAG+AGG | + | chr8_3:64308495-64308514 | None:intergenic | 35.0% |
ATCTGGGCTATAGAGAAAAA+TGG | + | chr8_3:64308631-64308650 | None:intergenic | 35.0% | |
CTTCTTTACTCATGACCAAT+AGG | + | chr8_3:64308684-64308703 | None:intergenic | 35.0% | |
AGAAAGATGGAGAATGTGAT+GGG | + | chr8_3:64308733-64308752 | None:intergenic | 35.0% | |
AAGAAAGATGGAGAATGTGA+TGG | + | chr8_3:64308734-64308753 | None:intergenic | 35.0% | |
AAAGTGAACATACACTGTGA+TGG | - | chr8_3:64308871-64308890 | Msa1302000:CDS | 35.0% | |
GCTTCTTGATGAGAACATTT+GGG | + | chr8_3:64309159-64309178 | None:intergenic | 35.0% | |
AGCTTCTTGATGAGAACATT+TGG | + | chr8_3:64309160-64309179 | None:intergenic | 35.0% | |
ATCAAGAAGCTTGCAAAATC+AGG | - | chr8_3:64309169-64309188 | Msa1302000:CDS | 35.0% | |
TCAAGAAGCTTGCAAAATCA+GGG | - | chr8_3:64309170-64309189 | Msa1302000:CDS | 35.0% | |
ACTGATTAACAACGTTGTTC+TGG | + | chr8_3:64309249-64309268 | None:intergenic | 35.0% | |
ATGCAAATTGACAATGGCAA+AGG | - | chr8_3:64309277-64309296 | Msa1302000:CDS | 35.0% | |
! | TGTATTTGTTGACCACCTTT+GGG | + | chr8_3:64309373-64309392 | None:intergenic | 35.0% |
! | TTGTATTTGTTGACCACCTT+TGG | + | chr8_3:64309374-64309393 | None:intergenic | 35.0% |
CAACAACTTCAACAGATGAA+AGG | - | chr8_3:64309448-64309467 | Msa1302000:CDS | 35.0% | |
!! | CATCTTTAGGATTCTGATTC+GGG | + | chr8_3:64309537-64309556 | None:intergenic | 35.0% |
!! | GCATCTTTAGGATTCTGATT+CGG | + | chr8_3:64309538-64309557 | None:intergenic | 35.0% |
CAGAATCCTAAAGATGCTAA+AGG | - | chr8_3:64309541-64309560 | Msa1302000:CDS | 35.0% | |
CTAAAATCATCCTCATCTTC+AGG | + | chr8_3:64309583-64309602 | None:intergenic | 35.0% | |
!! | GAGTTTGATGATGAAATGGT+TGG | - | chr8_3:64309661-64309680 | Msa1302000:CDS | 35.0% |
! | ATGAAGGGTGGCAATTTTAA+TGG | - | chr8_3:64309778-64309797 | Msa1302000:CDS | 35.0% |
AATAATCAGAATCAAGGTGG+AGG | - | chr8_3:64309925-64309944 | Msa1302000:CDS | 35.0% | |
GGTGGAGGTAACAAAAATAA+TGG | - | chr8_3:64309940-64309959 | Msa1302000:CDS | 35.0% | |
GGAGGTAACAAAAATAATGG+TGG | - | chr8_3:64309943-64309962 | Msa1302000:CDS | 35.0% | |
CCAGAAGCTAAAAATAATGG+CGG | - | chr8_3:64309970-64309989 | Msa1302000:CDS | 35.0% | |
AACAAGAATGGAGGGAATAA+TGG | - | chr8_3:64309997-64310016 | Msa1302000:CDS | 35.0% | |
! | GGATTTCAAAAAATGATGGG+TGG | - | chr8_3:64310117-64310136 | Msa1302000:CDS | 35.0% |
!! | TTTCAAAAAATGATGGGTGG+TGG | - | chr8_3:64310120-64310139 | Msa1302000:CDS | 35.0% |
ACAACAACAGCAACAGTTAA+TGG | - | chr8_3:64310350-64310369 | Msa1302000:CDS | 35.0% | |
ACAAACAATGTTCATGGTGA+TGG | - | chr8_3:64310566-64310585 | Msa1302000:exon | 35.0% | |
AAACCCCTTAAGATGAAAAG+GGG | + | chr8_3:64310701-64310720 | None:intergenic | 35.0% | |
GAAACCCCTTAAGATGAAAA+GGG | + | chr8_3:64310702-64310721 | None:intergenic | 35.0% | |
AGAAACCCCTTAAGATGAAA+AGG | + | chr8_3:64310703-64310722 | None:intergenic | 35.0% | |
AATGAAGTCACTCACTTCTG+TGG | - | chr8_3:64308345-64308364 | Msa1302000:three_prime_UTR | 40.0% | |
! | CCAAGAGTTTGCTCTATGTT+TGG | + | chr8_3:64308401-64308420 | None:intergenic | 40.0% |
CCAAACATAGAGCAAACTCT+TGG | - | chr8_3:64308398-64308417 | Msa1302000:three_prime_UTR | 40.0% | |
AGTAGTCACTGAGAGAGAAT+GGG | + | chr8_3:64308433-64308452 | None:intergenic | 40.0% | |
TAGTAGTCACTGAGAGAGAA+TGG | + | chr8_3:64308434-64308453 | None:intergenic | 40.0% | |
TTAGGAAGAGAGAGAATGGT+GGG | + | chr8_3:64308460-64308479 | None:intergenic | 40.0% | |
AGAGTTAGGAAGAGAGAGAA+TGG | + | chr8_3:64308464-64308483 | None:intergenic | 40.0% | |
AAGAGGCAAGTTTGAGAGTT+AGG | + | chr8_3:64308478-64308497 | None:intergenic | 40.0% | |
ACTGAGATAGATGCAGAACA+AGG | - | chr8_3:64309106-64309125 | Msa1302000:CDS | 40.0% | |
CTGAGATAGATGCAGAACAA+GGG | - | chr8_3:64309107-64309126 | Msa1302000:CDS | 40.0% | |
TTTGGGAACACTCCATAACT+CGG | + | chr8_3:64309203-64309222 | None:intergenic | 40.0% | |
CAAATTGACAATGGCAAAGG+TGG | - | chr8_3:64309280-64309299 | Msa1302000:CDS | 40.0% | |
!! | AAAGGTGGTGGAAACAACAA+AGG | - | chr8_3:64309295-64309314 | Msa1302000:CDS | 40.0% |
GGAAACAATAACCAACCCAA+AGG | - | chr8_3:64309355-64309374 | Msa1302000:CDS | 40.0% | |
AACAATAACCAACCCAAAGG+TGG | - | chr8_3:64309358-64309377 | Msa1302000:CDS | 40.0% | |
ATTTGATGTGCCTGAAGATG+AGG | - | chr8_3:64309570-64309589 | Msa1302000:CDS | 40.0% | |
GAAGGGGGTTTCATCTTATT+AGG | + | chr8_3:64309694-64309713 | None:intergenic | 40.0% | |
GTGCTCACATGATGTTGAAT+GGG | - | chr8_3:64309731-64309750 | Msa1302000:CDS | 40.0% | |
TTCATAGCACTCATAAGCTG+TGG | + | chr8_3:64309763-64309782 | None:intergenic | 40.0% | |
ACAGCTTATGAGTGCTATGA+AGG | - | chr8_3:64309762-64309781 | Msa1302000:CDS | 40.0% | |
CAGCTTATGAGTGCTATGAA+GGG | - | chr8_3:64309763-64309782 | Msa1302000:CDS | 40.0% | |
!! | AAGGGTGGCAATTTTAATGG+TGG | - | chr8_3:64309781-64309800 | Msa1302000:CDS | 40.0% |
!!! | AATTTTAATGGTGGTGGTGG+CGG | - | chr8_3:64309790-64309809 | Msa1302000:CDS | 40.0% |
TTCATGCCGTGAATTTGAAC+CGG | + | chr8_3:64309856-64309875 | None:intergenic | 40.0% | |
GTTCAAATTCACGGCATGAA+TGG | - | chr8_3:64309856-64309875 | Msa1302000:CDS | 40.0% | |
! | ATGAATGGTGGAAATGGCAA+TGG | - | chr8_3:64309871-64309890 | Msa1302000:CDS | 40.0% |
AATGGCAATGGAGGAAAGAA+AGG | - | chr8_3:64309883-64309902 | Msa1302000:CDS | 40.0% | |
GGAGGGAATAATCAGAATCA+AGG | - | chr8_3:64309919-64309938 | Msa1302000:CDS | 40.0% | |
GGGAATAATCAGAATCAAGG+TGG | - | chr8_3:64309922-64309941 | Msa1302000:CDS | 40.0% | |
!!! | CCGCCATTATTTTTAGCTTC+TGG | + | chr8_3:64309973-64309992 | None:intergenic | 40.0% |
GAAGCTAAAAATAATGGCGG+TGG | - | chr8_3:64309973-64309992 | Msa1302000:CDS | 40.0% | |
AAATAACGATGGGGGTAAGA+AGG | - | chr8_3:64310029-64310048 | Msa1302000:CDS | 40.0% | |
AATAACGATGGGGGTAAGAA+GGG | - | chr8_3:64310030-64310049 | Msa1302000:CDS | 40.0% | |
! | AAGGGTATGTCGATACCAAT+TGG | - | chr8_3:64310048-64310067 | Msa1302000:CDS | 40.0% |
TCAATCTCATCCTGGTAGTA+TGG | - | chr8_3:64310152-64310171 | Msa1302000:CDS | 40.0% | |
CAATCTCATCCTGGTAGTAT+GGG | - | chr8_3:64310153-64310172 | Msa1302000:CDS | 40.0% | |
!! | GGTGGTGGAGGAAATAATAT+GGG | - | chr8_3:64310174-64310193 | Msa1302000:intron | 40.0% |
! | GTGGTGGAGGAAATAATATG+GGG | - | chr8_3:64310175-64310194 | Msa1302000:intron | 40.0% |
AGTATGCCTATGAACCGAAT+GGG | - | chr8_3:64310204-64310223 | Msa1302000:intron | 40.0% | |
TACATGTAATTCACCTCAGG+AGG | + | chr8_3:64310456-64310475 | None:intergenic | 40.0% | |
GGATACATGTAATTCACCTC+AGG | + | chr8_3:64310459-64310478 | None:intergenic | 40.0% | |
AAAGCATGTGAGTAAGGATC+TGG | + | chr8_3:64310501-64310520 | None:intergenic | 40.0% | |
!! | AATGTTCATGGTGATGGTGA+TGG | - | chr8_3:64310572-64310591 | Msa1302000:exon | 40.0% |
! | TTGACCCCCTTTTCATCTTA+AGG | - | chr8_3:64310693-64310712 | Msa1302000:five_prime_UTR | 40.0% |
! | TGACCCCCTTTTCATCTTAA+GGG | - | chr8_3:64310694-64310713 | Msa1302000:five_prime_UTR | 40.0% |
AACCCCTTAAGATGAAAAGG+GGG | + | chr8_3:64310700-64310719 | None:intergenic | 40.0% | |
GGGGTTTCTAATTACCATAG+AGG | - | chr8_3:64310714-64310733 | Msa1302000:five_prime_UTR | 40.0% | |
ATGAAAGAAATTCCCAGCTC+TGG | - | chr8_3:64310894-64310913 | Msa1302000:five_prime_UTR | 40.0% | |
GTAGTCACTGAGAGAGAATG+GGG | + | chr8_3:64308432-64308451 | None:intergenic | 45.0% | |
GTTAGGAAGAGAGAGAATGG+TGG | + | chr8_3:64308461-64308480 | None:intergenic | 45.0% | |
GATAGATGCAGAACAAGGGA+AGG | - | chr8_3:64309111-64309130 | Msa1302000:CDS | 45.0% | |
AAGGGAAGGTCACAGTTTCA+GGG | - | chr8_3:64309125-64309144 | Msa1302000:CDS | 45.0% | |
ATTGACAATGGCAAAGGTGG+TGG | - | chr8_3:64309283-64309302 | Msa1302000:CDS | 45.0% | |
CAGAATCAAAACCAGAAGGG+TGG | - | chr8_3:64309331-64309350 | Msa1302000:CDS | 45.0% | |
AATCAAAACCAGAAGGGTGG+TGG | - | chr8_3:64309334-64309353 | Msa1302000:CDS | 45.0% | |
TATTGTTTCCACCACCCTTC+TGG | + | chr8_3:64309345-64309364 | None:intergenic | 45.0% | |
TTTGTTGACCACCTTTGGGT+TGG | + | chr8_3:64309369-64309388 | None:intergenic | 45.0% | |
!! | TAGGATTCTGATTCGGGTTC+TGG | + | chr8_3:64309531-64309550 | None:intergenic | 45.0% |
GGGGGTTTCATCTTATTAGG+TGG | + | chr8_3:64309691-64309710 | None:intergenic | 45.0% | |
AAACCCCCTTCTATGCCTAT+GGG | - | chr8_3:64309703-64309722 | Msa1302000:CDS | 45.0% | |
ATTCCCCATAGGCATAGAAG+GGG | + | chr8_3:64309710-64309729 | None:intergenic | 45.0% | |
CATTCCCCATAGGCATAGAA+GGG | + | chr8_3:64309711-64309730 | None:intergenic | 45.0% | |
GGTGCTCACATGATGTTGAA+TGG | - | chr8_3:64309730-64309749 | Msa1302000:CDS | 45.0% | |
CTTATGAGTGCTATGAAGGG+TGG | - | chr8_3:64309766-64309785 | Msa1302000:CDS | 45.0% | |
!! | GGTGGCAATTTTAATGGTGG+TGG | - | chr8_3:64309784-64309803 | Msa1302000:CDS | 45.0% |
!!! | GGCAATTTTAATGGTGGTGG+TGG | - | chr8_3:64309787-64309806 | Msa1302000:CDS | 45.0% |
CAAATTCACGGCATGAATGG+TGG | - | chr8_3:64309859-64309878 | Msa1302000:CDS | 45.0% | |
! | AATGGTGGAAATGGCAATGG+AGG | - | chr8_3:64309874-64309893 | Msa1302000:CDS | 45.0% |
AATGGAGGAAAGAAAGGTGG+TGG | - | chr8_3:64309889-64309908 | Msa1302000:CDS | 45.0% | |
AATGGCGGTGGAAACAAGAA+TGG | - | chr8_3:64309985-64310004 | Msa1302000:CDS | 45.0% | |
GGTATGTCGATACCAATTGG+TGG | - | chr8_3:64310051-64310070 | Msa1302000:CDS | 45.0% | |
ATGTCGATACCAATTGGTGG+CGG | - | chr8_3:64310054-64310073 | Msa1302000:CDS | 45.0% | |
!! | CAAAAAATGATGGGTGGTGG+AGG | - | chr8_3:64310123-64310142 | Msa1302000:CDS | 45.0% |
!! | GGGTGGTGGAGGAAATAATA+TGG | - | chr8_3:64310173-64310192 | Msa1302000:intron | 45.0% |
CGGTTCATAGGCATACTCAT+TGG | + | chr8_3:64310201-64310220 | None:intergenic | 45.0% | |
GAGTATGCCTATGAACCGAA+TGG | - | chr8_3:64310203-64310222 | Msa1302000:intron | 45.0% | |
TTACCACCCATTCGGTTCAT+AGG | + | chr8_3:64310213-64310232 | None:intergenic | 45.0% | |
CAGGAATGTTACCACCCATT+CGG | + | chr8_3:64310221-64310240 | None:intergenic | 45.0% | |
GGTAACATTCCTGCTGTTCA+AGG | - | chr8_3:64310228-64310247 | Msa1302000:intron | 45.0% | |
! | GATGAATCAACGTGCTGCTA+TGG | - | chr8_3:64310383-64310402 | Msa1302000:CDS | 45.0% |
! | TCATTGGCTGCTGAAATCTC+TGG | + | chr8_3:64310419-64310438 | None:intergenic | 45.0% |
AGCAGCCAATGATGTATGCA+AGG | - | chr8_3:64310427-64310446 | Msa1302000:intron | 45.0% | |
ATGTAATTCACCTCAGGAGG+TGG | + | chr8_3:64310453-64310472 | None:intergenic | 45.0% | |
AAGGATCTGGAGGAGGATAA+GGG | + | chr8_3:64310488-64310507 | None:intergenic | 45.0% | |
TAAGGATCTGGAGGAGGATA+AGG | + | chr8_3:64310489-64310508 | None:intergenic | 45.0% | |
! | TCGCTGAAAGCATGTGAGTA+AGG | + | chr8_3:64310507-64310526 | None:intergenic | 45.0% |
GAATCACATGACATTGCAGC+TGG | + | chr8_3:64310541-64310560 | None:intergenic | 45.0% | |
! | GACCCCCTTTTCATCTTAAG+GGG | - | chr8_3:64310695-64310714 | Msa1302000:five_prime_UTR | 45.0% |
AGAAATGAGCAACCAGAGCT+GGG | + | chr8_3:64310909-64310928 | None:intergenic | 45.0% | |
CAAGGGAAGGTCACAGTTTC+AGG | - | chr8_3:64309124-64309143 | Msa1302000:CDS | 50.0% | |
GGTCACAGTTTCAGGGAATG+TGG | - | chr8_3:64309132-64309151 | Msa1302000:CDS | 50.0% | |
CAGGGAAACATGCCGAGTTA+TGG | - | chr8_3:64309188-64309207 | Msa1302000:CDS | 50.0% | |
TGAAGTTGTTGCTGCTGCTG+AGG | + | chr8_3:64309412-64309431 | None:intergenic | 50.0% | |
GAAACCCCCTTCTATGCCTA+TGG | - | chr8_3:64309702-64309721 | Msa1302000:CDS | 50.0% | |
AACCCCCTTCTATGCCTATG+GGG | - | chr8_3:64309704-64309723 | Msa1302000:CDS | 50.0% | |
TTCCCCATAGGCATAGAAGG+GGG | + | chr8_3:64309709-64309728 | None:intergenic | 50.0% | |
CCATTCCCCATAGGCATAGA+AGG | + | chr8_3:64309712-64309731 | None:intergenic | 50.0% | |
CCTTCTATGCCTATGGGGAA+TGG | - | chr8_3:64309709-64309728 | Msa1302000:CDS | 50.0% | |
ATGTGAGCACCATTCCCCAT+AGG | + | chr8_3:64309721-64309740 | None:intergenic | 50.0% | |
GGAAATGGACAGAAACCTGG+TGG | - | chr8_3:64309811-64309830 | Msa1302000:CDS | 50.0% | |
AATGGACAGAAACCTGGTGG+TGG | - | chr8_3:64309814-64309833 | Msa1302000:CDS | 50.0% | |
!! | CCTGTGCCGGTTCAAATTCA+CGG | - | chr8_3:64309847-64309866 | Msa1302000:CDS | 50.0% |
! | CACGGCATGAATGGTGGAAA+TGG | - | chr8_3:64309865-64309884 | Msa1302000:CDS | 50.0% |
GGCAATGGAGGAAAGAAAGG+TGG | - | chr8_3:64309886-64309905 | Msa1302000:CDS | 50.0% | |
GCGGTGGAAACAAGAATGGA+GGG | - | chr8_3:64309989-64310008 | Msa1302000:CDS | 50.0% | |
!! | AAAATGATGGGTGGTGGAGG+TGG | - | chr8_3:64310126-64310145 | Msa1302000:CDS | 50.0% |
TCTCATCCTGGTAGTATGGG+TGG | - | chr8_3:64310156-64310175 | Msa1302000:CDS | 50.0% | |
ATGCCTATGAACCGAATGGG+TGG | - | chr8_3:64310207-64310226 | Msa1302000:intron | 50.0% | |
TCCTGCTGTTCAAGGTCTAC+CGG | - | chr8_3:64310236-64310255 | Msa1302000:intron | 50.0% | |
! | GGAGGAGGTTACTTTCAAGG+TGG | - | chr8_3:64310264-64310283 | Msa1302000:intron | 50.0% |
! | GGAGGTTACTTTCAAGGTGG+TGG | - | chr8_3:64310267-64310286 | Msa1302000:intron | 50.0% |
! | GGTTACTTTCAAGGTGGTGG+TGG | - | chr8_3:64310270-64310289 | Msa1302000:intron | 50.0% |
!! | TACTTTCAAGGTGGTGGTGG+TGG | - | chr8_3:64310273-64310292 | Msa1302000:intron | 50.0% |
GGATTCCCCTGCATCATTTC+CGG | + | chr8_3:64310306-64310325 | None:intergenic | 50.0% | |
! | GAATCAACGTGCTGCTATGG+TGG | - | chr8_3:64310386-64310405 | Msa1302000:CDS | 50.0% |
! | GGTGGCCTTGCATACATCAT+TGG | + | chr8_3:64310435-64310454 | None:intergenic | 50.0% |
TCTGGAGGAGGATAAGGGTA+AGG | + | chr8_3:64310483-64310502 | None:intergenic | 50.0% | |
TGTGAGTAAGGATCTGGAGG+AGG | + | chr8_3:64310495-64310514 | None:intergenic | 50.0% | |
GCATGTGAGTAAGGATCTGG+AGG | + | chr8_3:64310498-64310517 | None:intergenic | 50.0% | |
GAGAAATGAGCAACCAGAGC+TGG | + | chr8_3:64310910-64310929 | None:intergenic | 50.0% | |
!! | TTCTGATTCGGGTTCTGGCC+CGG | + | chr8_3:64309526-64309545 | None:intergenic | 55.0% |
!! | AATGGTGGTGGTGGCGGAAA+TGG | - | chr8_3:64309796-64309815 | Msa1302000:CDS | 55.0% |
GGCGGAAATGGACAGAAACC+TGG | - | chr8_3:64309808-64309827 | Msa1302000:CDS | 55.0% | |
CCGTGAATTTGAACCGGCAC+AGG | + | chr8_3:64309850-64309869 | None:intergenic | 55.0% | |
! | GGAGGAAAGAAAGGTGGTGG+TGG | - | chr8_3:64309892-64309911 | Msa1302000:CDS | 55.0% |
!! | GGAAAGAAAGGTGGTGGTGG+TGG | - | chr8_3:64309895-64309914 | Msa1302000:CDS | 55.0% |
!! | AAGAAAGGTGGTGGTGGTGG+TGG | - | chr8_3:64309898-64309917 | Msa1302000:CDS | 55.0% |
GGCGGTGGAAACAAGAATGG+AGG | - | chr8_3:64309988-64310007 | Msa1302000:CDS | 55.0% | |
!! | TCGATACCAATTGGTGGCGG+AGG | - | chr8_3:64310057-64310076 | Msa1302000:CDS | 55.0% |
!! | ATACCAATTGGTGGCGGAGG+TGG | - | chr8_3:64310060-64310079 | Msa1302000:CDS | 55.0% |
! | AGGCGGTGGTGGTAATGTTC+AGG | - | chr8_3:64310083-64310102 | Msa1302000:CDS | 55.0% |
! | GGTGGTGGTCAATCTCATCC+TGG | - | chr8_3:64310144-64310163 | Msa1302000:CDS | 55.0% |
CATCCTGGTAGTATGGGTGG+TGG | - | chr8_3:64310159-64310178 | Msa1302000:CDS | 55.0% | |
! | GGCGGAGGAGGTTACTTTCA+AGG | - | chr8_3:64310261-64310280 | Msa1302000:intron | 55.0% |
TCCAGGACCGGAAATGATGC+AGG | - | chr8_3:64310296-64310315 | Msa1302000:intron | 55.0% | |
CCAGGACCGGAAATGATGCA+GGG | - | chr8_3:64310297-64310316 | Msa1302000:intron | 55.0% | |
CAGGACCGGAAATGATGCAG+GGG | - | chr8_3:64310298-64310317 | Msa1302000:intron | 55.0% | |
TGCTGCTGCTGCTGCTGATA+TGG | + | chr8_3:64310327-64310346 | None:intergenic | 55.0% | |
GGAGGAGGATAAGGGTAAGG+AGG | + | chr8_3:64310480-64310499 | None:intergenic | 55.0% | |
GATGCCGCTGAATCAGCACC+CGG | - | chr8_3:64309504-64309523 | Msa1302000:CDS | 60.0% | |
ATGCCGCTGAATCAGCACCC+GGG | - | chr8_3:64309505-64309524 | Msa1302000:CDS | 60.0% | |
!! | TCTGATTCGGGTTCTGGCCC+GGG | + | chr8_3:64309525-64309544 | None:intergenic | 60.0% |
!! | GGACAGAAACCTGGTGGTGG+TGG | - | chr8_3:64309817-64309836 | Msa1302000:CDS | 60.0% |
!! | CAGAAACCTGGTGGTGGTGG+TGG | - | chr8_3:64309820-64309839 | Msa1302000:CDS | 60.0% |
!! | AAACCTGGTGGTGGTGGTGG+AGG | - | chr8_3:64309823-64309842 | Msa1302000:CDS | 60.0% |
!! | AAAGGTGGTGGTGGTGGTGG+AGG | - | chr8_3:64309901-64309920 | Msa1302000:CDS | 60.0% |
!! | AAGGTGGTGGTGGTGGTGGA+GGG | - | chr8_3:64309902-64309921 | Msa1302000:CDS | 60.0% |
!! | ATGATGGGTGGTGGAGGTGG+TGG | - | chr8_3:64310129-64310148 | Msa1302000:CDS | 60.0% |
CCTCCACCACCCATACTACC+AGG | + | chr8_3:64310165-64310184 | None:intergenic | 60.0% | |
! | CCTGGTAGTATGGGTGGTGG+AGG | - | chr8_3:64310162-64310181 | Msa1302000:intron | 60.0% |
GCCGGTAGACCTTGAACAGC+AGG | + | chr8_3:64310240-64310259 | None:intergenic | 60.0% | |
GCTGTTCAAGGTCTACCGGC+AGG | - | chr8_3:64310240-64310259 | Msa1302000:intron | 60.0% | |
GTTCAAGGTCTACCGGCAGG+CGG | - | chr8_3:64310243-64310262 | Msa1302000:intron | 60.0% | |
AAGTAACCTCCTCCGCCTGC+CGG | + | chr8_3:64310258-64310277 | None:intergenic | 60.0% | |
CCCTGCATCATTTCCGGTCC+TGG | + | chr8_3:64310300-64310319 | None:intergenic | 60.0% | |
GTATGCAAGGCCACCTCCTG+AGG | - | chr8_3:64310440-64310459 | Msa1302000:intron | 60.0% | |
!! | TGGCCCGGGTGCTGATTCAG+CGG | + | chr8_3:64309511-64309530 | None:intergenic | 65.0% |
!! | TGGTGGTGGAGGACCTGTGC+CGG | - | chr8_3:64309834-64309853 | Msa1302000:CDS | 65.0% |
CCTCCACCTCCGCCACCAAT+TGG | + | chr8_3:64310066-64310085 | None:intergenic | 65.0% | |
!! | CCAATTGGTGGCGGAGGTGG+AGG | - | chr8_3:64310063-64310082 | Msa1302000:CDS | 65.0% |
!! | ATTGGTGGCGGAGGTGGAGG+CGG | - | chr8_3:64310066-64310085 | Msa1302000:CDS | 65.0% |
!! | CAAGGTGGTGGTGGTGGTCC+AGG | - | chr8_3:64310279-64310298 | Msa1302000:intron | 65.0% |
!! | TGGTGGTGGTGGTCCAGGAC+CGG | - | chr8_3:64310284-64310303 | Msa1302000:intron | 65.0% |
GGTCCTCCACCACCACCACC+AGG | + | chr8_3:64309829-64309848 | None:intergenic | 70.0% | |
CAAGGTCTACCGGCAGGCGG+AGG | - | chr8_3:64310246-64310265 | Msa1302000:intron | 70.0% | |
GGTCTACCGGCAGGCGGAGG+AGG | - | chr8_3:64310249-64310268 | Msa1302000:intron | 75.0% | |
!!! | GGTGGCGGAGGTGGAGGCGG+TGG | - | chr8_3:64310069-64310088 | Msa1302000:CDS | 80.0% |
! | GGCGGAGGTGGAGGCGGTGG+TGG | - | chr8_3:64310072-64310091 | Msa1302000:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 64308310 | 64310963 | 64308310 | ID=Msa1302000;Name=Msa1302000 |
chr8_3 | mRNA | 64308310 | 64310963 | 64308310 | ID=Msa1302000-mRNA-1;Parent=Msa1302000;Name=Msa1302000-mRNA-1;_AED=0.02;_eAED=0.02;_QI=381|1|1|1|1|1|3|406|522 |
chr8_3 | exon | 64308310 | 64310178 | 64308310 | ID=Msa1302000-mRNA-1:exon:19400;Parent=Msa1302000-mRNA-1 |
chr8_3 | exon | 64310339 | 64310414 | 64310339 | ID=Msa1302000-mRNA-1:exon:19399;Parent=Msa1302000-mRNA-1 |
chr8_3 | exon | 64310553 | 64310963 | 64310553 | ID=Msa1302000-mRNA-1:exon:19398;Parent=Msa1302000-mRNA-1 |
chr8_3 | five_prime_UTR | 64310583 | 64310963 | 64310583 | ID=Msa1302000-mRNA-1:five_prime_utr;Parent=Msa1302000-mRNA-1 |
chr8_3 | CDS | 64310553 | 64310582 | 64310553 | ID=Msa1302000-mRNA-1:cds;Parent=Msa1302000-mRNA-1 |
chr8_3 | CDS | 64310339 | 64310414 | 64310339 | ID=Msa1302000-mRNA-1:cds;Parent=Msa1302000-mRNA-1 |
chr8_3 | CDS | 64308716 | 64310178 | 64308716 | ID=Msa1302000-mRNA-1:cds;Parent=Msa1302000-mRNA-1 |
chr8_3 | three_prime_UTR | 64308310 | 64308715 | 64308310 | ID=Msa1302000-mRNA-1:three_prime_utr;Parent=Msa1302000-mRNA-1 |
Gene Sequence |
Protein sequence |