AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1302000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1302000 MtrunA17_Chr4g0065651 85.526 532 47 10 1 522 1 512 8.89e-144 423
Msa1302000 MtrunA17_Chr0c22g0493881 81.510 384 49 7 1 380 1 366 6.92e-93 288
Msa1302000 MtrunA17_Chr4g0065621 86.275 306 27 5 1 306 1 291 5.95e-87 273
Msa1302000 MtrunA17_Chr2g0287751 64.865 259 65 10 1 255 1 237 7.93e-56 194
Msa1302000 MtrunA17_Chr2g0287741 48.885 538 181 23 10 522 15 483 5.00e-46 169
Msa1302000 MtrunA17_Chr4g0065611 85.714 133 13 3 394 522 12 142 4.78e-37 134
Msa1302000 MtrunA17_Chr0c22g0493871 86.364 132 12 3 395 522 1 130 5.67e-37 133
Msa1302000 MtrunA17_Chr1g0208301 70.513 78 20 1 1 75 1 78 6.76e-30 120
Msa1302000 MtrunA17_Chr4g0067291 50.000 114 41 3 7 120 71 168 1.74e-24 104
Msa1302000 MtrunA17_Chr7g0269081 67.143 70 23 0 5 74 17 86 2.49e-24 103
Msa1302000 MtrunA17_Chr3g0111541 53.521 71 33 0 3 73 5 75 3.69e-19 86.3
Msa1302000 MtrunA17_Chr1g0192131 57.333 75 31 1 4 77 9 83 5.15e-19 89.4
Msa1302000 MtrunA17_Chr7g0272571 53.521 71 33 0 9 79 32 102 1.39e-18 87.4
Msa1302000 MtrunA17_Chr2g0296001 60.294 68 27 0 7 74 70 137 4.69e-17 82.8
Msa1302000 MtrunA17_Chr1g0198341 39.189 74 45 0 10 83 4 77 2.14e-13 65.5
Msa1302000 MtrunA17_Chr8g0382721 52.459 61 29 0 14 74 33 93 8.55e-13 66.2
Msa1302000 MtrunA17_Chr2g0285561 32.283 127 77 3 8 125 6 132 2.12e-12 67.8
Msa1302000 MtrunA17_Chr1g0160201 45.902 61 33 0 14 74 29 89 2.22e-12 64.7
Msa1302000 MtrunA17_Chr3g0124411 47.761 67 35 0 8 74 28 94 2.73e-12 64.7
Msa1302000 MtrunA17_Chr2g0325601 42.254 71 41 0 14 84 6 76 4.58e-12 63.9
Msa1302000 MtrunA17_Chr1g0189221 38.356 73 45 0 7 79 50 122 4.71e-12 64.7
Msa1302000 MtrunA17_Chr7g0251491 33.654 104 62 3 2 98 40 143 7.28e-12 63.9
Msa1302000 MtrunA17_Chr4g0028461 48.276 87 43 2 12 96 68 154 1.01e-11 66.2
Msa1302000 MtrunA17_Chr7g0218981 37.037 81 51 0 13 93 7 87 1.32e-11 62.0
Msa1302000 MtrunA17_Chr5g0407821 37.179 78 49 0 3 80 16 93 1.79e-11 62.4
Msa1302000 MtrunA17_Chr5g0404641 41.176 68 40 0 9 76 2 69 5.73e-11 61.2
Msa1302000 MtrunA17_Chr4g0050571 45.455 66 35 1 10 75 101 165 9.38e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1302000 AT3G06130.2 51.736 288 94 9 1 276 1 255 2.45e-46 166
Msa1302000 AT3G06130.1 51.736 288 94 9 1 276 1 255 4.66e-45 165
Msa1302000 AT5G19090.2 77.228 101 23 0 1 101 1 101 1.19e-43 161
Msa1302000 AT5G19090.3 77.228 101 23 0 1 101 1 101 1.19e-43 161
Msa1302000 AT5G19090.5 70.000 120 27 1 1 111 1 120 7.79e-43 161
Msa1302000 AT5G19090.4 70.000 120 27 1 1 111 1 120 7.79e-43 161
Msa1302000 AT5G19090.1 70.000 120 27 1 1 111 1 120 7.79e-43 161
Msa1302000 AT3G05220.1 63.514 74 27 0 1 74 1 74 2.07e-26 113
Msa1302000 AT5G27690.1 52.475 101 43 1 5 105 25 120 2.93e-26 110
Msa1302000 AT1G23000.1 61.628 86 29 2 1 83 1 85 7.78e-26 109
Msa1302000 AT1G23000.2 61.628 86 29 2 1 83 61 145 2.20e-25 108
Msa1302000 AT5G37860.1 54.412 68 31 0 9 76 9 76 2.63e-19 88.2
Msa1302000 AT1G56210.1 54.667 75 33 1 10 83 40 114 1.12e-18 88.2
Msa1302000 AT1G06330.1 46.875 64 34 0 14 77 6 69 3.33e-13 67.8
Msa1302000 AT1G66240.1 40.000 65 39 0 10 74 33 97 4.99e-12 63.2
Msa1302000 AT4G10465.1 36.957 92 58 0 1 92 42 133 5.55e-12 65.1
Msa1302000 AT3G56891.1 43.750 64 36 0 14 77 20 83 1.65e-11 63.2
Msa1302000 AT3G02960.1 41.892 74 42 1 3 75 119 192 2.53e-11 64.3
Msa1302000 AT3G56240.3 41.791 67 39 0 10 76 3 69 4.82e-11 60.8
Msa1302000 AT3G56240.1 41.791 67 39 0 10 76 3 69 4.82e-11 60.8
Msa1302000 AT4G23882.1 43.678 87 38 3 9 84 77 163 5.03e-11 63.9
Msa1302000 AT1G71050.1 39.394 66 40 0 9 74 27 92 7.39e-11 60.8

Find 201 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTATATGTGTTTATATTT+TGG 0.061931 8_3:-64308435 Msa1302000:three_prime_UTR
CAAGGGAAGGTCACAGTTTC+AGG 0.145406 8_3:-64310127 Msa1302000:CDS
CAAGATCTAGCTCAATTTAA+AGG 0.182916 8_3:-64309776 Msa1302000:CDS
TACTATGTTAATTATGTTCT+TGG 0.218147 8_3:-64308484 Msa1302000:three_prime_UTR
TGTTTGGTGTCTTTATTTAT+TGG 0.221368 8_3:+64310869 None:intergenic
TAGGATTCTGATTCGGGTTC+TGG 0.245506 8_3:+64309723 None:intergenic
GGATTCCCCTGCATCATTTC+CGG 0.253390 8_3:+64308948 None:intergenic
AAGAGGCAAGTTTGAGAGTT+AGG 0.278652 8_3:+64310776 None:intergenic
ACAACAACAGCAACAGTTAA+TGG 0.289999 8_3:-64308901 Msa1302000:CDS
TATTGTTTCCACCACCCTTC+TGG 0.290425 8_3:+64309909 None:intergenic
CATCTTTAGGATTCTGATTC+GGG 0.295568 8_3:+64309717 None:intergenic
TTGTATTTGTTGACCACCTT+TGG 0.297173 8_3:+64309880 None:intergenic
ATCAAGAAGCTTGCAAAATC+AGG 0.297726 8_3:-64310082 Msa1302000:CDS
TTAACACCTTTAGCATCTTT+AGG 0.299936 8_3:+64309704 None:intergenic
CCCTGCATCATTTCCGGTCC+TGG 0.305122 8_3:+64308954 None:intergenic
AGCTTCTTGATGAGAACATT+TGG 0.309355 8_3:+64310094 None:intergenic
TCAATCTCATCCTGGTAGTA+TGG 0.312405 8_3:-64309099 Msa1302000:CDS
GTTACTTACTTTATTCCTAT+TGG 0.313104 8_3:-64310585 Msa1302000:five_prime_UTR
CCATTCCCCATAGGCATAGA+AGG 0.318053 8_3:+64309542 None:intergenic
CTTCTTTACTCATGACCAAT+AGG 0.330043 8_3:+64310570 None:intergenic
TAAGGATCTGGAGGAGGATA+AGG 0.339463 8_3:+64308765 None:intergenic
GCATCTTTAGGATTCTGATT+CGG 0.340947 8_3:+64309716 None:intergenic
TCTGATTCGGGTTCTGGCCC+GGG 0.343572 8_3:+64309729 None:intergenic
ACTGATTAACAACGTTGTTC+TGG 0.344905 8_3:+64310005 None:intergenic
GGTGATTATAGATCTGAAAA+TGG 0.348415 8_3:+64310644 None:intergenic
GGCGGAGGTGGAGGCGGTGG+TGG 0.350490 8_3:-64309179 Msa1302000:CDS
TTCTGATTCGGGTTCTGGCC+CGG 0.355308 8_3:+64309728 None:intergenic
GAAATCAATGTTATTGAGAA+TGG 0.356396 8_3:-64308381 Msa1302000:three_prime_UTR
GGGTGGTGGAGGAAATAATA+TGG 0.357181 8_3:-64309078 Msa1302000:CDS
TTACCACCCATTCGGTTCAT+AGG 0.360924 8_3:+64309041 None:intergenic
TTCTATAAACTACTCCTCTA+TGG 0.368659 8_3:+64308523 None:intergenic
CTAAAATCATCCTCATCTTC+AGG 0.371343 8_3:+64309671 None:intergenic
GGTGGCGGAGGTGGAGGCGG+TGG 0.373427 8_3:-64309182 Msa1302000:CDS
TGAAATGAAATGAGAATAGA+AGG 0.374304 8_3:+64310712 None:intergenic
AAGGAAAAGAGAGAAATAAA+TGG 0.382972 8_3:+64310731 None:intergenic
TACTTTCAAGGTGGTGGTGG+TGG 0.384334 8_3:-64308978 Msa1302000:CDS
TAGTAGTCACTGAGAGAGAA+TGG 0.385371 8_3:+64310820 None:intergenic
AAGAAAGGTGGTGGTGGTGG+TGG 0.386759 8_3:-64309353 Msa1302000:CDS
GAGAAATGAGCAACCAGAGC+TGG 0.388714 8_3:+64308344 None:intergenic
CCAAGAGTTTGCTCTATGTT+TGG 0.388834 8_3:+64310853 None:intergenic
AATATATTGCATAAAATTAG+AGG 0.390778 8_3:+64308632 None:intergenic
AATGGTGGTGGTGGCGGAAA+TGG 0.397465 8_3:-64309455 Msa1302000:CDS
AACAAGAATGGAGGGAATAA+TGG 0.397922 8_3:-64309254 Msa1302000:CDS
AGAGTTAGGAAGAGAGAGAA+TGG 0.398540 8_3:+64310790 None:intergenic
CATCAAACAAACAATGTTCA+TGG 0.400654 8_3:-64308691 Msa1302000:three_prime_UTR
CAGGGAAACATGCCGAGTTA+TGG 0.402581 8_3:-64310063 Msa1302000:CDS
ACTTGTGATAAATAAAGATC+TGG 0.404190 8_3:+64310606 None:intergenic
CCAATTGGTGGCGGAGGTGG+AGG 0.411942 8_3:-64309188 Msa1302000:CDS
TGTATTTGTTGACCACCTTT+GGG 0.413549 8_3:+64309881 None:intergenic
AGAAACCCCTTAAGATGAAA+AGG 0.415613 8_3:+64308551 None:intergenic
CAGAAACCTGGTGGTGGTGG+TGG 0.418442 8_3:-64309431 Msa1302000:CDS
AATGTTCAGGCTATGAATAA+TGG 0.423799 8_3:-64309155 Msa1302000:CDS
GCTTCTTGATGAGAACATTT+GGG 0.423822 8_3:+64310095 None:intergenic
CACGGCATGAATGGTGGAAA+TGG 0.424726 8_3:-64309386 Msa1302000:CDS
AAAATCTTACAGAAAATTGA+TGG 0.430085 8_3:-64310338 Msa1302000:intron
ATGATGGGTGGTGGAGGTGG+TGG 0.432564 8_3:-64309122 Msa1302000:CDS
AAAATGATGGGTGGTGGAGG+TGG 0.436665 8_3:-64309125 Msa1302000:CDS
GGTAACATTCCTGCTGTTCA+AGG 0.436866 8_3:-64309023 Msa1302000:CDS
AGGCGGTGGTGGTAATGTTC+AGG 0.438058 8_3:-64309168 Msa1302000:CDS
GGTTACTTTCAAGGTGGTGG+TGG 0.439749 8_3:-64308981 Msa1302000:CDS
CCTCCACCTCCGCCACCAAT+TGG 0.440018 8_3:+64309188 None:intergenic
TTCATGCCGTGAATTTGAAC+CGG 0.440785 8_3:+64309398 None:intergenic
GGAAAGAAAGGTGGTGGTGG+TGG 0.445640 8_3:-64309356 Msa1302000:CDS
ACTATGTTAATTATGTTCTT+GGG 0.449339 8_3:-64308483 Msa1302000:three_prime_UTR
ATTGGTGGCGGAGGTGGAGG+CGG 0.453929 8_3:-64309185 Msa1302000:CDS
ATACCAATTGGTGGCGGAGG+TGG 0.457299 8_3:-64309191 Msa1302000:CDS
CCTTCTATGCCTATGGGGAA+TGG 0.458052 8_3:-64309542 Msa1302000:CDS
TGATGAGTTTGATGATGAAA+TGG 0.461887 8_3:-64309594 Msa1302000:CDS
AACAACTTCAACAGATGAAA+GGG 0.462139 8_3:-64309802 Msa1302000:CDS
CGGTTCATAGGCATACTCAT+TGG 0.463995 8_3:+64309053 None:intergenic
ACAGCTTATGAGTGCTATGA+AGG 0.465021 8_3:-64309489 Msa1302000:CDS
TTAGGAAGAGAGAGAATGGT+GGG 0.466008 8_3:+64310794 None:intergenic
AAGGATCTGGAGGAGGATAA+GGG 0.466318 8_3:+64308766 None:intergenic
GGTCTACCGGCAGGCGGAGG+AGG 0.468185 8_3:-64309002 Msa1302000:CDS
AAAGCATGTGAGTAAGGATC+TGG 0.469198 8_3:+64308753 None:intergenic
TGGTGGTGGTGGTCCAGGAC+CGG 0.469917 8_3:-64308967 Msa1302000:CDS
AAGAGTCTCTGAAACATAAG+AGG 0.472199 8_3:+64310759 None:intergenic
AAATCAATGTTATTGAGAAT+GGG 0.477281 8_3:-64308380 Msa1302000:three_prime_UTR
GAAACCCCTTAAGATGAAAA+GGG 0.479165 8_3:+64308552 None:intergenic
TCCAGGACCGGAAATGATGC+AGG 0.480211 8_3:-64308955 Msa1302000:CDS
GGCGGAGGAGGTTACTTTCA+AGG 0.482444 8_3:-64308990 Msa1302000:CDS
ATTGACAATGGCAAAGGTGG+TGG 0.482824 8_3:-64309968 Msa1302000:CDS
AGTAGTCACTGAGAGAGAAT+GGG 0.484635 8_3:+64310821 None:intergenic
CCAAACATAGAGCAAACTCT+TGG 0.488925 8_3:-64310853 Msa1302000:five_prime_UTR
CAATCTCATCCTGGTAGTAT+GGG 0.490190 8_3:-64309098 Msa1302000:CDS
TGGTGGTGGAGGACCTGTGC+CGG 0.493420 8_3:-64309417 Msa1302000:CDS
TCGCTGAAAGCATGTGAGTA+AGG 0.494235 8_3:+64308747 None:intergenic
AAGGGTATGTCGATACCAAT+TGG 0.495826 8_3:-64309203 Msa1302000:CDS
ATGAAAGAAATTCCCAGCTC+TGG 0.499167 8_3:-64308357 Msa1302000:three_prime_UTR
TCCTGCTGTTCAAGGTCTAC+CGG 0.501026 8_3:-64309015 Msa1302000:CDS
GCCGGTAGACCTTGAACAGC+AGG 0.503563 8_3:+64309014 None:intergenic
GGTGGCCTTGCATACATCAT+TGG 0.504586 8_3:+64308819 None:intergenic
TCTGGAGGAGGATAAGGGTA+AGG 0.506412 8_3:+64308771 None:intergenic
CATCCTGGTAGTATGGGTGG+TGG 0.513520 8_3:-64309092 Msa1302000:CDS
GTTCAAATTCACGGCATGAA+TGG 0.514493 8_3:-64309395 Msa1302000:CDS
CCGTGAATTTGAACCGGCAC+AGG 0.516132 8_3:+64309404 None:intergenic
GGAGGTTACTTTCAAGGTGG+TGG 0.516276 8_3:-64308984 Msa1302000:CDS
GGTGGTGGAGGAAATAATAT+GGG 0.517548 8_3:-64309077 Msa1302000:CDS
AAGTAACCTCCTCCGCCTGC+CGG 0.520732 8_3:+64308996 None:intergenic
GTAGTAATCAAAATAACGAT+GGG 0.520911 8_3:-64309232 Msa1302000:CDS
CAGAATCCTAAAGATGCTAA+AGG 0.521196 8_3:-64309710 Msa1302000:CDS
AATCAAAACCAGAAGGGTGG+TGG 0.522342 8_3:-64309917 Msa1302000:CDS
GGAGGAAAGAAAGGTGGTGG+TGG 0.522847 8_3:-64309359 Msa1302000:CDS
CAGGAATGTTACCACCCATT+CGG 0.525275 8_3:+64309033 None:intergenic
GGTGCTCACATGATGTTGAA+TGG 0.526053 8_3:-64309521 Msa1302000:CDS
CAACAACTTCAACAGATGAA+AGG 0.526664 8_3:-64309803 Msa1302000:CDS
GTTAGGAAGAGAGAGAATGG+TGG 0.526762 8_3:+64310793 None:intergenic
CAAGGTCTACCGGCAGGCGG+AGG 0.530336 8_3:-64309005 Msa1302000:CDS
ATGTAATTCACCTCAGGAGG+TGG 0.534211 8_3:+64308801 None:intergenic
AATGGCAATGGAGGAAAGAA+AGG 0.535264 8_3:-64309368 Msa1302000:CDS
CCTGGTAGTATGGGTGGTGG+AGG 0.540462 8_3:-64309089 Msa1302000:CDS
GTGCTCACATGATGTTGAAT+GGG 0.541270 8_3:-64309520 Msa1302000:CDS
TCATTGGCTGCTGAAATCTC+TGG 0.541514 8_3:+64308835 None:intergenic
ATTGCATAAAATTAGAGGAT+AGG 0.542139 8_3:+64308637 None:intergenic
GCTGTTCAAGGTCTACCGGC+AGG 0.542942 8_3:-64309011 Msa1302000:CDS
GGACAGAAACCTGGTGGTGG+TGG 0.543498 8_3:-64309434 Msa1302000:CDS
CCTGTGCCGGTTCAAATTCA+CGG 0.544320 8_3:-64309404 Msa1302000:CDS
GAATCACATGACATTGCAGC+TGG 0.546046 8_3:+64308713 None:intergenic
GGAGGAGGATAAGGGTAAGG+AGG 0.547967 8_3:+64308774 None:intergenic
CTTGTGATAAATAAAGATCT+GGG 0.548351 8_3:+64310607 None:intergenic
CCTCCACCACCCATACTACC+AGG 0.550212 8_3:+64309089 None:intergenic
TCAAGAAGCTTGCAAAATCA+GGG 0.551852 8_3:-64310081 Msa1302000:CDS
GGCGGAAATGGACAGAAACC+TGG 0.552019 8_3:-64309443 Msa1302000:CDS
TCGATACCAATTGGTGGCGG+AGG 0.554646 8_3:-64309194 Msa1302000:CDS
GATGCCGCTGAATCAGCACC+CGG 0.559535 8_3:-64309747 Msa1302000:CDS
GGTGGTGGTCAATCTCATCC+TGG 0.561328 8_3:-64309107 Msa1302000:CDS
GATGAATCAACGTGCTGCTA+TGG 0.564311 8_3:-64308868 Msa1302000:CDS
AGAAATGAGCAACCAGAGCT+GGG 0.565461 8_3:+64308345 None:intergenic
CAAATTCACGGCATGAATGG+TGG 0.565701 8_3:-64309392 Msa1302000:CDS
GGAGGGAATAATCAGAATCA+AGG 0.567228 8_3:-64309332 Msa1302000:CDS
TGAAGTTGTTGCTGCTGCTG+AGG 0.567794 8_3:+64309842 None:intergenic
AATGGCGGTGGAAACAAGAA+TGG 0.567852 8_3:-64309266 Msa1302000:CDS
GGATACATGTAATTCACCTC+AGG 0.568572 8_3:+64308795 None:intergenic
CATTCCCCATAGGCATAGAA+GGG 0.572536 8_3:+64309543 None:intergenic
GAATCAACGTGCTGCTATGG+TGG 0.576359 8_3:-64308865 Msa1302000:CDS
TTTGTTGACCACCTTTGGGT+TGG 0.576873 8_3:+64309885 None:intergenic
ATGAATGGTGGAAATGGCAA+TGG 0.579729 8_3:-64309380 Msa1302000:CDS
GAGTTTGATGATGAAATGGT+TGG 0.582338 8_3:-64309590 Msa1302000:CDS
GGTAGTAATCAAAATAACGA+TGG 0.583746 8_3:-64309233 Msa1302000:CDS
GGTCACAGTTTCAGGGAATG+TGG 0.584262 8_3:-64310119 Msa1302000:CDS
AGCAGCCAATGATGTATGCA+AGG 0.586173 8_3:-64308824 Msa1302000:CDS
ACAAACAATGTTCATGGTGA+TGG 0.588045 8_3:-64308685 Msa1302000:three_prime_UTR
AAGGGAAGGTCACAGTTTCA+GGG 0.589814 8_3:-64310126 Msa1302000:CDS
GGGGTTTCTAATTACCATAG+AGG 0.591890 8_3:-64308537 Msa1302000:three_prime_UTR
AAATCAGAATCAAAACCAGA+AGG 0.592384 8_3:-64309924 Msa1302000:CDS
TGGCCCGGGTGCTGATTCAG+CGG 0.593907 8_3:+64309743 None:intergenic
GGTCCTCCACCACCACCACC+AGG 0.597489 8_3:+64309425 None:intergenic
TTTGGGAACACTCCATAACT+CGG 0.598490 8_3:+64310051 None:intergenic
ATTTGATGTGCCTGAAGATG+AGG 0.599659 8_3:-64309681 Msa1302000:CDS
GGCAATGGAGGAAAGAAAGG+TGG 0.603629 8_3:-64309365 Msa1302000:CDS
AATCAGAATCAAAACCAGAA+GGG 0.603694 8_3:-64309923 Msa1302000:CDS
TGTGAGTAAGGATCTGGAGG+AGG 0.603879 8_3:+64308759 None:intergenic
AACAATAACCAACCCAAAGG+TGG 0.605261 8_3:-64309893 Msa1302000:CDS
AATAATCAGAATCAAGGTGG+AGG 0.605707 8_3:-64309326 Msa1302000:CDS
CAATTGAAGTCACATGGCCA+CGG 0.606226 8_3:-64310956 None:intergenic
AATGGAGGAAAGAAAGGTGG+TGG 0.606743 8_3:-64309362 Msa1302000:CDS
AATGTTCATGGTGATGGTGA+TGG 0.608623 8_3:-64308679 Msa1302000:three_prime_UTR
GGCGGTGGAAACAAGAATGG+AGG 0.609460 8_3:-64309263 Msa1302000:CDS
CAAATTGACAATGGCAAAGG+TGG 0.610618 8_3:-64309971 Msa1302000:CDS
TTCATAGCACTCATAAGCTG+TGG 0.610940 8_3:+64309491 None:intergenic
ATGCAAATTGACAATGGCAA+AGG 0.611165 8_3:-64309974 Msa1302000:CDS
TCTCATCCTGGTAGTATGGG+TGG 0.611507 8_3:-64309095 Msa1302000:CDS
AATGAAGTCACTCACTTCTG+TGG 0.611607 8_3:-64310906 Msa1302000:five_prime_UTR
AAAGTGAACATACACTGTGA+TGG 0.617847 8_3:-64310380 Msa1302000:CDS
CCAGGACCGGAAATGATGCA+GGG 0.618163 8_3:-64308954 Msa1302000:CDS
ATGTGAGCACCATTCCCCAT+AGG 0.619841 8_3:+64309533 None:intergenic
AAACCCCTTAAGATGAAAAG+GGG 0.621521 8_3:+64308553 None:intergenic
ACTGAGATAGATGCAGAACA+AGG 0.622005 8_3:-64310145 Msa1302000:CDS
AGTATGCCTATGAACCGAAT+GGG 0.622246 8_3:-64309047 Msa1302000:CDS
AAGAACATGCAAATTGACAA+TGG 0.628311 8_3:-64309980 Msa1302000:CDS
GGTCAACAAATACAAATACA+AGG 0.629935 8_3:-64309872 Msa1302000:CDS
ATGCCGCTGAATCAGCACCC+GGG 0.631365 8_3:-64309746 Msa1302000:CDS
ATGTCGATACCAATTGGTGG+CGG 0.631785 8_3:-64309197 Msa1302000:CDS
GTTCAAGGTCTACCGGCAGG+CGG 0.633909 8_3:-64309008 Msa1302000:CDS
GCATGTGAGTAAGGATCTGG+AGG 0.633919 8_3:+64308756 None:intergenic
GTAGTCACTGAGAGAGAATG+GGG 0.633943 8_3:+64310822 None:intergenic
GGTATGTCGATACCAATTGG+TGG 0.637679 8_3:-64309200 Msa1302000:CDS
CTTATGAGTGCTATGAAGGG+TGG 0.638762 8_3:-64309485 Msa1302000:CDS
TACATGTAATTCACCTCAGG+AGG 0.640426 8_3:+64308798 None:intergenic
GATAGATGCAGAACAAGGGA+AGG 0.641999 8_3:-64310140 Msa1302000:CDS
CAGCTTATGAGTGCTATGAA+GGG 0.642847 8_3:-64309488 Msa1302000:CDS
GCGGTGGAAACAAGAATGGA+GGG 0.646163 8_3:-64309262 Msa1302000:CDS
TAGTAATCAAAATAACGATG+GGG 0.650397 8_3:-64309231 Msa1302000:CDS
ATGCCTATGAACCGAATGGG+TGG 0.650716 8_3:-64309044 Msa1302000:CDS
GAGTATGCCTATGAACCGAA+TGG 0.653536 8_3:-64309048 Msa1302000:CDS
AATGGACAGAAACCTGGTGG+TGG 0.653878 8_3:-64309437 Msa1302000:CDS
AGTAATCAAAATAACGATGG+GGG 0.662461 8_3:-64309230 Msa1302000:CDS
CAGAATCAAAACCAGAAGGG+TGG 0.662734 8_3:-64309920 Msa1302000:CDS
AATGGTGGAAATGGCAATGG+AGG 0.665518 8_3:-64309377 Msa1302000:CDS
CTGAGATAGATGCAGAACAA+GGG 0.666808 8_3:-64310144 Msa1302000:CDS
CAGGACCGGAAATGATGCAG+GGG 0.670762 8_3:-64308953 Msa1302000:CDS
ATTCCCCATAGGCATAGAAG+GGG 0.672578 8_3:+64309544 None:intergenic
AAAGGTGGTGGAAACAACAA+AGG 0.677851 8_3:-64309956 Msa1302000:CDS
GGGAATAATCAGAATCAAGG+TGG 0.678494 8_3:-64309329 Msa1302000:CDS
GGAAACAATAACCAACCCAA+AGG 0.682874 8_3:-64309896 Msa1302000:CDS
GTATGCAAGGCCACCTCCTG+AGG 0.686248 8_3:-64308811 Msa1302000:CDS
AACCCCTTAAGATGAAAAGG+GGG 0.692080 8_3:+64308554 None:intergenic
TTCCCCATAGGCATAGAAGG+GGG 0.698362 8_3:+64309545 None:intergenic
GTGGTGGAGGAAATAATATG+GGG 0.726893 8_3:-64309076 Msa1302000:CDS
GGAAATGGACAGAAACCTGG+TGG 0.762212 8_3:-64309440 Msa1302000:CDS
GGAGGAGGTTACTTTCAAGG+TGG 0.764262 8_3:-64308987 Msa1302000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTATTTTGATTATTGTT+TGG + chr8_3:64309226-64309245 None:intergenic 10.0%
!!! TTTATATGTGTTTATATTTT+GGG - chr8_3:64310817-64310836 Msa1302000:five_prime_UTR 10.0%
!! AATATATTGCATAAAATTAG+AGG + chr8_3:64310622-64310641 None:intergenic 15.0%
!!! GTTTATATGTGTTTATATTT+TGG - chr8_3:64310816-64310835 Msa1302000:five_prime_UTR 15.0%
!! GCAAAAAAAATAAAGAAAGA+TGG + chr8_3:64308746-64308765 None:intergenic 20.0%
!! AAAATCTTACAGAAAATTGA+TGG - chr8_3:64308913-64308932 Msa1302000:CDS 20.0%
!!! TTTTGATTATTGTTTGGTTT+GGG + chr8_3:64309220-64309239 None:intergenic 20.0%
!!! ATTTTGATTATTGTTTGGTT+TGG + chr8_3:64309221-64309240 None:intergenic 20.0%
!!! TAATGGATTTCAAAAAATGA+TGG - chr8_3:64310113-64310132 Msa1302000:CDS 20.0%
!!! AATGGATTTCAAAAAATGAT+GGG - chr8_3:64310114-64310133 Msa1302000:CDS 20.0%
!! TACTATGTTAATTATGTTCT+TGG - chr8_3:64310767-64310786 Msa1302000:five_prime_UTR 20.0%
!! ACTATGTTAATTATGTTCTT+GGG - chr8_3:64310768-64310787 Msa1302000:five_prime_UTR 20.0%
!! AAATCAATGTTATTGAGAAT+GGG - chr8_3:64310871-64310890 Msa1302000:five_prime_UTR 20.0%
!!! TGTTTGGTGTCTTTATTTAT+TGG + chr8_3:64308385-64308404 None:intergenic 25.0%
! AAGGAAAAGAGAGAAATAAA+TGG + chr8_3:64308523-64308542 None:intergenic 25.0%
! TGAAATGAAATGAGAATAGA+AGG + chr8_3:64308542-64308561 None:intergenic 25.0%
!!! TTGTTTGGTTGAGTTTTATT+TGG + chr8_3:64308573-64308592 None:intergenic 25.0%
!! GAGTATTTTATGTTCTTGTT+TGG + chr8_3:64308588-64308607 None:intergenic 25.0%
! CTTGTGATAAATAAAGATCT+GGG + chr8_3:64308647-64308666 None:intergenic 25.0%
! ACTTGTGATAAATAAAGATC+TGG + chr8_3:64308648-64308667 None:intergenic 25.0%
! GTTACTTACTTTATTCCTAT+TGG - chr8_3:64308666-64308685 Msa1302000:three_prime_UTR 25.0%
!!! AGAAGAATTTTTGAAGATAC+AGG - chr8_3:64308699-64308718 Msa1302000:exon 25.0%
!! CTTAAATTAAGCTTCTGTTT+TGG + chr8_3:64309031-64309050 None:intergenic 25.0%
!!! TGATTTTAGTGATGATGAAA+TGG - chr8_3:64309594-64309613 Msa1302000:CDS 25.0%
! GTAGTAATCAAAATAACGAT+GGG - chr8_3:64310019-64310038 Msa1302000:CDS 25.0%
! TAGTAATCAAAATAACGATG+GGG - chr8_3:64310020-64310039 Msa1302000:CDS 25.0%
! ATTGCATAAAATTAGAGGAT+AGG + chr8_3:64310617-64310636 None:intergenic 25.0%
! TAAAAAACTCATGTTTCACT+GGG + chr8_3:64310648-64310667 None:intergenic 25.0%
! GAAATCAATGTTATTGAGAA+TGG - chr8_3:64310870-64310889 Msa1302000:five_prime_UTR 25.0%
!!! TTTTTTCAGCAATTTAACCG+TGG + chr8_3:64308315-64308334 None:intergenic 30.0%
GGTGATTATAGATCTGAAAA+TGG + chr8_3:64308610-64308629 None:intergenic 30.0%
TTCTGCATACACAAATAACA+AGG + chr8_3:64308841-64308860 None:intergenic 30.0%
!! TGTGTTGATTAATGAATGAC+AGG - chr8_3:64309073-64309092 Msa1302000:CDS 30.0%
AAGAACATGCAAATTGACAA+TGG - chr8_3:64309271-64309290 Msa1302000:CDS 30.0%
AAATCAGAATCAAAACCAGA+AGG - chr8_3:64309327-64309346 Msa1302000:CDS 30.0%
AATCAGAATCAAAACCAGAA+GGG - chr8_3:64309328-64309347 Msa1302000:CDS 30.0%
GGTCAACAAATACAAATACA+AGG - chr8_3:64309379-64309398 Msa1302000:CDS 30.0%
AACAACTTCAACAGATGAAA+GGG - chr8_3:64309449-64309468 Msa1302000:CDS 30.0%
! CAAGATCTAGCTCAATTTAA+AGG - chr8_3:64309475-64309494 Msa1302000:CDS 30.0%
TTAACACCTTTAGCATCTTT+AGG + chr8_3:64309550-64309569 None:intergenic 30.0%
!! TGATGAGTTTGATGATGAAA+TGG - chr8_3:64309657-64309676 Msa1302000:CDS 30.0%
ATGCCAGAAGCTAAAAATAA+TGG - chr8_3:64309967-64309986 Msa1302000:CDS 30.0%
GGTAGTAATCAAAATAACGA+TGG - chr8_3:64310018-64310037 Msa1302000:CDS 30.0%
AGTAATCAAAATAACGATGG+GGG - chr8_3:64310021-64310040 Msa1302000:CDS 30.0%
AATGTTCAGGCTATGAATAA+TGG - chr8_3:64310096-64310115 Msa1302000:CDS 30.0%
CATCAAACAAACAATGTTCA+TGG - chr8_3:64310560-64310579 Msa1302000:CDS 30.0%
CTAAAAAACTCATGTTTCAC+TGG + chr8_3:64310649-64310668 None:intergenic 30.0%
TTCTATAAACTACTCCTCTA+TGG + chr8_3:64310731-64310750 None:intergenic 30.0%
!! AAGAGTCTCTGAAACATAAG+AGG + chr8_3:64308495-64308514 None:intergenic 35.0%
ATCTGGGCTATAGAGAAAAA+TGG + chr8_3:64308631-64308650 None:intergenic 35.0%
CTTCTTTACTCATGACCAAT+AGG + chr8_3:64308684-64308703 None:intergenic 35.0%
AGAAAGATGGAGAATGTGAT+GGG + chr8_3:64308733-64308752 None:intergenic 35.0%
AAGAAAGATGGAGAATGTGA+TGG + chr8_3:64308734-64308753 None:intergenic 35.0%
AAAGTGAACATACACTGTGA+TGG - chr8_3:64308871-64308890 Msa1302000:CDS 35.0%
GCTTCTTGATGAGAACATTT+GGG + chr8_3:64309159-64309178 None:intergenic 35.0%
AGCTTCTTGATGAGAACATT+TGG + chr8_3:64309160-64309179 None:intergenic 35.0%
ATCAAGAAGCTTGCAAAATC+AGG - chr8_3:64309169-64309188 Msa1302000:CDS 35.0%
TCAAGAAGCTTGCAAAATCA+GGG - chr8_3:64309170-64309189 Msa1302000:CDS 35.0%
ACTGATTAACAACGTTGTTC+TGG + chr8_3:64309249-64309268 None:intergenic 35.0%
ATGCAAATTGACAATGGCAA+AGG - chr8_3:64309277-64309296 Msa1302000:CDS 35.0%
! TGTATTTGTTGACCACCTTT+GGG + chr8_3:64309373-64309392 None:intergenic 35.0%
! TTGTATTTGTTGACCACCTT+TGG + chr8_3:64309374-64309393 None:intergenic 35.0%
CAACAACTTCAACAGATGAA+AGG - chr8_3:64309448-64309467 Msa1302000:CDS 35.0%
!! CATCTTTAGGATTCTGATTC+GGG + chr8_3:64309537-64309556 None:intergenic 35.0%
!! GCATCTTTAGGATTCTGATT+CGG + chr8_3:64309538-64309557 None:intergenic 35.0%
CAGAATCCTAAAGATGCTAA+AGG - chr8_3:64309541-64309560 Msa1302000:CDS 35.0%
CTAAAATCATCCTCATCTTC+AGG + chr8_3:64309583-64309602 None:intergenic 35.0%
!! GAGTTTGATGATGAAATGGT+TGG - chr8_3:64309661-64309680 Msa1302000:CDS 35.0%
! ATGAAGGGTGGCAATTTTAA+TGG - chr8_3:64309778-64309797 Msa1302000:CDS 35.0%
AATAATCAGAATCAAGGTGG+AGG - chr8_3:64309925-64309944 Msa1302000:CDS 35.0%
GGTGGAGGTAACAAAAATAA+TGG - chr8_3:64309940-64309959 Msa1302000:CDS 35.0%
GGAGGTAACAAAAATAATGG+TGG - chr8_3:64309943-64309962 Msa1302000:CDS 35.0%
CCAGAAGCTAAAAATAATGG+CGG - chr8_3:64309970-64309989 Msa1302000:CDS 35.0%
AACAAGAATGGAGGGAATAA+TGG - chr8_3:64309997-64310016 Msa1302000:CDS 35.0%
! GGATTTCAAAAAATGATGGG+TGG - chr8_3:64310117-64310136 Msa1302000:CDS 35.0%
!! TTTCAAAAAATGATGGGTGG+TGG - chr8_3:64310120-64310139 Msa1302000:CDS 35.0%
ACAACAACAGCAACAGTTAA+TGG - chr8_3:64310350-64310369 Msa1302000:CDS 35.0%
ACAAACAATGTTCATGGTGA+TGG - chr8_3:64310566-64310585 Msa1302000:exon 35.0%
AAACCCCTTAAGATGAAAAG+GGG + chr8_3:64310701-64310720 None:intergenic 35.0%
GAAACCCCTTAAGATGAAAA+GGG + chr8_3:64310702-64310721 None:intergenic 35.0%
AGAAACCCCTTAAGATGAAA+AGG + chr8_3:64310703-64310722 None:intergenic 35.0%
AATGAAGTCACTCACTTCTG+TGG - chr8_3:64308345-64308364 Msa1302000:three_prime_UTR 40.0%
! CCAAGAGTTTGCTCTATGTT+TGG + chr8_3:64308401-64308420 None:intergenic 40.0%
CCAAACATAGAGCAAACTCT+TGG - chr8_3:64308398-64308417 Msa1302000:three_prime_UTR 40.0%
AGTAGTCACTGAGAGAGAAT+GGG + chr8_3:64308433-64308452 None:intergenic 40.0%
TAGTAGTCACTGAGAGAGAA+TGG + chr8_3:64308434-64308453 None:intergenic 40.0%
TTAGGAAGAGAGAGAATGGT+GGG + chr8_3:64308460-64308479 None:intergenic 40.0%
AGAGTTAGGAAGAGAGAGAA+TGG + chr8_3:64308464-64308483 None:intergenic 40.0%
AAGAGGCAAGTTTGAGAGTT+AGG + chr8_3:64308478-64308497 None:intergenic 40.0%
ACTGAGATAGATGCAGAACA+AGG - chr8_3:64309106-64309125 Msa1302000:CDS 40.0%
CTGAGATAGATGCAGAACAA+GGG - chr8_3:64309107-64309126 Msa1302000:CDS 40.0%
TTTGGGAACACTCCATAACT+CGG + chr8_3:64309203-64309222 None:intergenic 40.0%
CAAATTGACAATGGCAAAGG+TGG - chr8_3:64309280-64309299 Msa1302000:CDS 40.0%
!! AAAGGTGGTGGAAACAACAA+AGG - chr8_3:64309295-64309314 Msa1302000:CDS 40.0%
GGAAACAATAACCAACCCAA+AGG - chr8_3:64309355-64309374 Msa1302000:CDS 40.0%
AACAATAACCAACCCAAAGG+TGG - chr8_3:64309358-64309377 Msa1302000:CDS 40.0%
ATTTGATGTGCCTGAAGATG+AGG - chr8_3:64309570-64309589 Msa1302000:CDS 40.0%
GAAGGGGGTTTCATCTTATT+AGG + chr8_3:64309694-64309713 None:intergenic 40.0%
GTGCTCACATGATGTTGAAT+GGG - chr8_3:64309731-64309750 Msa1302000:CDS 40.0%
TTCATAGCACTCATAAGCTG+TGG + chr8_3:64309763-64309782 None:intergenic 40.0%
ACAGCTTATGAGTGCTATGA+AGG - chr8_3:64309762-64309781 Msa1302000:CDS 40.0%
CAGCTTATGAGTGCTATGAA+GGG - chr8_3:64309763-64309782 Msa1302000:CDS 40.0%
!! AAGGGTGGCAATTTTAATGG+TGG - chr8_3:64309781-64309800 Msa1302000:CDS 40.0%
!!! AATTTTAATGGTGGTGGTGG+CGG - chr8_3:64309790-64309809 Msa1302000:CDS 40.0%
TTCATGCCGTGAATTTGAAC+CGG + chr8_3:64309856-64309875 None:intergenic 40.0%
GTTCAAATTCACGGCATGAA+TGG - chr8_3:64309856-64309875 Msa1302000:CDS 40.0%
! ATGAATGGTGGAAATGGCAA+TGG - chr8_3:64309871-64309890 Msa1302000:CDS 40.0%
AATGGCAATGGAGGAAAGAA+AGG - chr8_3:64309883-64309902 Msa1302000:CDS 40.0%
GGAGGGAATAATCAGAATCA+AGG - chr8_3:64309919-64309938 Msa1302000:CDS 40.0%
GGGAATAATCAGAATCAAGG+TGG - chr8_3:64309922-64309941 Msa1302000:CDS 40.0%
!!! CCGCCATTATTTTTAGCTTC+TGG + chr8_3:64309973-64309992 None:intergenic 40.0%
GAAGCTAAAAATAATGGCGG+TGG - chr8_3:64309973-64309992 Msa1302000:CDS 40.0%
AAATAACGATGGGGGTAAGA+AGG - chr8_3:64310029-64310048 Msa1302000:CDS 40.0%
AATAACGATGGGGGTAAGAA+GGG - chr8_3:64310030-64310049 Msa1302000:CDS 40.0%
! AAGGGTATGTCGATACCAAT+TGG - chr8_3:64310048-64310067 Msa1302000:CDS 40.0%
TCAATCTCATCCTGGTAGTA+TGG - chr8_3:64310152-64310171 Msa1302000:CDS 40.0%
CAATCTCATCCTGGTAGTAT+GGG - chr8_3:64310153-64310172 Msa1302000:CDS 40.0%
!! GGTGGTGGAGGAAATAATAT+GGG - chr8_3:64310174-64310193 Msa1302000:intron 40.0%
! GTGGTGGAGGAAATAATATG+GGG - chr8_3:64310175-64310194 Msa1302000:intron 40.0%
AGTATGCCTATGAACCGAAT+GGG - chr8_3:64310204-64310223 Msa1302000:intron 40.0%
TACATGTAATTCACCTCAGG+AGG + chr8_3:64310456-64310475 None:intergenic 40.0%
GGATACATGTAATTCACCTC+AGG + chr8_3:64310459-64310478 None:intergenic 40.0%
AAAGCATGTGAGTAAGGATC+TGG + chr8_3:64310501-64310520 None:intergenic 40.0%
!! AATGTTCATGGTGATGGTGA+TGG - chr8_3:64310572-64310591 Msa1302000:exon 40.0%
! TTGACCCCCTTTTCATCTTA+AGG - chr8_3:64310693-64310712 Msa1302000:five_prime_UTR 40.0%
! TGACCCCCTTTTCATCTTAA+GGG - chr8_3:64310694-64310713 Msa1302000:five_prime_UTR 40.0%
AACCCCTTAAGATGAAAAGG+GGG + chr8_3:64310700-64310719 None:intergenic 40.0%
GGGGTTTCTAATTACCATAG+AGG - chr8_3:64310714-64310733 Msa1302000:five_prime_UTR 40.0%
ATGAAAGAAATTCCCAGCTC+TGG - chr8_3:64310894-64310913 Msa1302000:five_prime_UTR 40.0%
GTAGTCACTGAGAGAGAATG+GGG + chr8_3:64308432-64308451 None:intergenic 45.0%
GTTAGGAAGAGAGAGAATGG+TGG + chr8_3:64308461-64308480 None:intergenic 45.0%
GATAGATGCAGAACAAGGGA+AGG - chr8_3:64309111-64309130 Msa1302000:CDS 45.0%
AAGGGAAGGTCACAGTTTCA+GGG - chr8_3:64309125-64309144 Msa1302000:CDS 45.0%
ATTGACAATGGCAAAGGTGG+TGG - chr8_3:64309283-64309302 Msa1302000:CDS 45.0%
CAGAATCAAAACCAGAAGGG+TGG - chr8_3:64309331-64309350 Msa1302000:CDS 45.0%
AATCAAAACCAGAAGGGTGG+TGG - chr8_3:64309334-64309353 Msa1302000:CDS 45.0%
TATTGTTTCCACCACCCTTC+TGG + chr8_3:64309345-64309364 None:intergenic 45.0%
TTTGTTGACCACCTTTGGGT+TGG + chr8_3:64309369-64309388 None:intergenic 45.0%
!! TAGGATTCTGATTCGGGTTC+TGG + chr8_3:64309531-64309550 None:intergenic 45.0%
GGGGGTTTCATCTTATTAGG+TGG + chr8_3:64309691-64309710 None:intergenic 45.0%
AAACCCCCTTCTATGCCTAT+GGG - chr8_3:64309703-64309722 Msa1302000:CDS 45.0%
ATTCCCCATAGGCATAGAAG+GGG + chr8_3:64309710-64309729 None:intergenic 45.0%
CATTCCCCATAGGCATAGAA+GGG + chr8_3:64309711-64309730 None:intergenic 45.0%
GGTGCTCACATGATGTTGAA+TGG - chr8_3:64309730-64309749 Msa1302000:CDS 45.0%
CTTATGAGTGCTATGAAGGG+TGG - chr8_3:64309766-64309785 Msa1302000:CDS 45.0%
!! GGTGGCAATTTTAATGGTGG+TGG - chr8_3:64309784-64309803 Msa1302000:CDS 45.0%
!!! GGCAATTTTAATGGTGGTGG+TGG - chr8_3:64309787-64309806 Msa1302000:CDS 45.0%
CAAATTCACGGCATGAATGG+TGG - chr8_3:64309859-64309878 Msa1302000:CDS 45.0%
! AATGGTGGAAATGGCAATGG+AGG - chr8_3:64309874-64309893 Msa1302000:CDS 45.0%
AATGGAGGAAAGAAAGGTGG+TGG - chr8_3:64309889-64309908 Msa1302000:CDS 45.0%
AATGGCGGTGGAAACAAGAA+TGG - chr8_3:64309985-64310004 Msa1302000:CDS 45.0%
GGTATGTCGATACCAATTGG+TGG - chr8_3:64310051-64310070 Msa1302000:CDS 45.0%
ATGTCGATACCAATTGGTGG+CGG - chr8_3:64310054-64310073 Msa1302000:CDS 45.0%
!! CAAAAAATGATGGGTGGTGG+AGG - chr8_3:64310123-64310142 Msa1302000:CDS 45.0%
!! GGGTGGTGGAGGAAATAATA+TGG - chr8_3:64310173-64310192 Msa1302000:intron 45.0%
CGGTTCATAGGCATACTCAT+TGG + chr8_3:64310201-64310220 None:intergenic 45.0%
GAGTATGCCTATGAACCGAA+TGG - chr8_3:64310203-64310222 Msa1302000:intron 45.0%
TTACCACCCATTCGGTTCAT+AGG + chr8_3:64310213-64310232 None:intergenic 45.0%
CAGGAATGTTACCACCCATT+CGG + chr8_3:64310221-64310240 None:intergenic 45.0%
GGTAACATTCCTGCTGTTCA+AGG - chr8_3:64310228-64310247 Msa1302000:intron 45.0%
! GATGAATCAACGTGCTGCTA+TGG - chr8_3:64310383-64310402 Msa1302000:CDS 45.0%
! TCATTGGCTGCTGAAATCTC+TGG + chr8_3:64310419-64310438 None:intergenic 45.0%
AGCAGCCAATGATGTATGCA+AGG - chr8_3:64310427-64310446 Msa1302000:intron 45.0%
ATGTAATTCACCTCAGGAGG+TGG + chr8_3:64310453-64310472 None:intergenic 45.0%
AAGGATCTGGAGGAGGATAA+GGG + chr8_3:64310488-64310507 None:intergenic 45.0%
TAAGGATCTGGAGGAGGATA+AGG + chr8_3:64310489-64310508 None:intergenic 45.0%
! TCGCTGAAAGCATGTGAGTA+AGG + chr8_3:64310507-64310526 None:intergenic 45.0%
GAATCACATGACATTGCAGC+TGG + chr8_3:64310541-64310560 None:intergenic 45.0%
! GACCCCCTTTTCATCTTAAG+GGG - chr8_3:64310695-64310714 Msa1302000:five_prime_UTR 45.0%
AGAAATGAGCAACCAGAGCT+GGG + chr8_3:64310909-64310928 None:intergenic 45.0%
CAAGGGAAGGTCACAGTTTC+AGG - chr8_3:64309124-64309143 Msa1302000:CDS 50.0%
GGTCACAGTTTCAGGGAATG+TGG - chr8_3:64309132-64309151 Msa1302000:CDS 50.0%
CAGGGAAACATGCCGAGTTA+TGG - chr8_3:64309188-64309207 Msa1302000:CDS 50.0%
TGAAGTTGTTGCTGCTGCTG+AGG + chr8_3:64309412-64309431 None:intergenic 50.0%
GAAACCCCCTTCTATGCCTA+TGG - chr8_3:64309702-64309721 Msa1302000:CDS 50.0%
AACCCCCTTCTATGCCTATG+GGG - chr8_3:64309704-64309723 Msa1302000:CDS 50.0%
TTCCCCATAGGCATAGAAGG+GGG + chr8_3:64309709-64309728 None:intergenic 50.0%
CCATTCCCCATAGGCATAGA+AGG + chr8_3:64309712-64309731 None:intergenic 50.0%
CCTTCTATGCCTATGGGGAA+TGG - chr8_3:64309709-64309728 Msa1302000:CDS 50.0%
ATGTGAGCACCATTCCCCAT+AGG + chr8_3:64309721-64309740 None:intergenic 50.0%
GGAAATGGACAGAAACCTGG+TGG - chr8_3:64309811-64309830 Msa1302000:CDS 50.0%
AATGGACAGAAACCTGGTGG+TGG - chr8_3:64309814-64309833 Msa1302000:CDS 50.0%
!! CCTGTGCCGGTTCAAATTCA+CGG - chr8_3:64309847-64309866 Msa1302000:CDS 50.0%
! CACGGCATGAATGGTGGAAA+TGG - chr8_3:64309865-64309884 Msa1302000:CDS 50.0%
GGCAATGGAGGAAAGAAAGG+TGG - chr8_3:64309886-64309905 Msa1302000:CDS 50.0%
GCGGTGGAAACAAGAATGGA+GGG - chr8_3:64309989-64310008 Msa1302000:CDS 50.0%
!! AAAATGATGGGTGGTGGAGG+TGG - chr8_3:64310126-64310145 Msa1302000:CDS 50.0%
TCTCATCCTGGTAGTATGGG+TGG - chr8_3:64310156-64310175 Msa1302000:CDS 50.0%
ATGCCTATGAACCGAATGGG+TGG - chr8_3:64310207-64310226 Msa1302000:intron 50.0%
TCCTGCTGTTCAAGGTCTAC+CGG - chr8_3:64310236-64310255 Msa1302000:intron 50.0%
! GGAGGAGGTTACTTTCAAGG+TGG - chr8_3:64310264-64310283 Msa1302000:intron 50.0%
! GGAGGTTACTTTCAAGGTGG+TGG - chr8_3:64310267-64310286 Msa1302000:intron 50.0%
! GGTTACTTTCAAGGTGGTGG+TGG - chr8_3:64310270-64310289 Msa1302000:intron 50.0%
!! TACTTTCAAGGTGGTGGTGG+TGG - chr8_3:64310273-64310292 Msa1302000:intron 50.0%
GGATTCCCCTGCATCATTTC+CGG + chr8_3:64310306-64310325 None:intergenic 50.0%
! GAATCAACGTGCTGCTATGG+TGG - chr8_3:64310386-64310405 Msa1302000:CDS 50.0%
! GGTGGCCTTGCATACATCAT+TGG + chr8_3:64310435-64310454 None:intergenic 50.0%
TCTGGAGGAGGATAAGGGTA+AGG + chr8_3:64310483-64310502 None:intergenic 50.0%
TGTGAGTAAGGATCTGGAGG+AGG + chr8_3:64310495-64310514 None:intergenic 50.0%
GCATGTGAGTAAGGATCTGG+AGG + chr8_3:64310498-64310517 None:intergenic 50.0%
GAGAAATGAGCAACCAGAGC+TGG + chr8_3:64310910-64310929 None:intergenic 50.0%
!! TTCTGATTCGGGTTCTGGCC+CGG + chr8_3:64309526-64309545 None:intergenic 55.0%
!! AATGGTGGTGGTGGCGGAAA+TGG - chr8_3:64309796-64309815 Msa1302000:CDS 55.0%
GGCGGAAATGGACAGAAACC+TGG - chr8_3:64309808-64309827 Msa1302000:CDS 55.0%
CCGTGAATTTGAACCGGCAC+AGG + chr8_3:64309850-64309869 None:intergenic 55.0%
! GGAGGAAAGAAAGGTGGTGG+TGG - chr8_3:64309892-64309911 Msa1302000:CDS 55.0%
!! GGAAAGAAAGGTGGTGGTGG+TGG - chr8_3:64309895-64309914 Msa1302000:CDS 55.0%
!! AAGAAAGGTGGTGGTGGTGG+TGG - chr8_3:64309898-64309917 Msa1302000:CDS 55.0%
GGCGGTGGAAACAAGAATGG+AGG - chr8_3:64309988-64310007 Msa1302000:CDS 55.0%
!! TCGATACCAATTGGTGGCGG+AGG - chr8_3:64310057-64310076 Msa1302000:CDS 55.0%
!! ATACCAATTGGTGGCGGAGG+TGG - chr8_3:64310060-64310079 Msa1302000:CDS 55.0%
! AGGCGGTGGTGGTAATGTTC+AGG - chr8_3:64310083-64310102 Msa1302000:CDS 55.0%
! GGTGGTGGTCAATCTCATCC+TGG - chr8_3:64310144-64310163 Msa1302000:CDS 55.0%
CATCCTGGTAGTATGGGTGG+TGG - chr8_3:64310159-64310178 Msa1302000:CDS 55.0%
! GGCGGAGGAGGTTACTTTCA+AGG - chr8_3:64310261-64310280 Msa1302000:intron 55.0%
TCCAGGACCGGAAATGATGC+AGG - chr8_3:64310296-64310315 Msa1302000:intron 55.0%
CCAGGACCGGAAATGATGCA+GGG - chr8_3:64310297-64310316 Msa1302000:intron 55.0%
CAGGACCGGAAATGATGCAG+GGG - chr8_3:64310298-64310317 Msa1302000:intron 55.0%
TGCTGCTGCTGCTGCTGATA+TGG + chr8_3:64310327-64310346 None:intergenic 55.0%
GGAGGAGGATAAGGGTAAGG+AGG + chr8_3:64310480-64310499 None:intergenic 55.0%
GATGCCGCTGAATCAGCACC+CGG - chr8_3:64309504-64309523 Msa1302000:CDS 60.0%
ATGCCGCTGAATCAGCACCC+GGG - chr8_3:64309505-64309524 Msa1302000:CDS 60.0%
!! TCTGATTCGGGTTCTGGCCC+GGG + chr8_3:64309525-64309544 None:intergenic 60.0%
!! GGACAGAAACCTGGTGGTGG+TGG - chr8_3:64309817-64309836 Msa1302000:CDS 60.0%
!! CAGAAACCTGGTGGTGGTGG+TGG - chr8_3:64309820-64309839 Msa1302000:CDS 60.0%
!! AAACCTGGTGGTGGTGGTGG+AGG - chr8_3:64309823-64309842 Msa1302000:CDS 60.0%
!! AAAGGTGGTGGTGGTGGTGG+AGG - chr8_3:64309901-64309920 Msa1302000:CDS 60.0%
!! AAGGTGGTGGTGGTGGTGGA+GGG - chr8_3:64309902-64309921 Msa1302000:CDS 60.0%
!! ATGATGGGTGGTGGAGGTGG+TGG - chr8_3:64310129-64310148 Msa1302000:CDS 60.0%
CCTCCACCACCCATACTACC+AGG + chr8_3:64310165-64310184 None:intergenic 60.0%
! CCTGGTAGTATGGGTGGTGG+AGG - chr8_3:64310162-64310181 Msa1302000:intron 60.0%
GCCGGTAGACCTTGAACAGC+AGG + chr8_3:64310240-64310259 None:intergenic 60.0%
GCTGTTCAAGGTCTACCGGC+AGG - chr8_3:64310240-64310259 Msa1302000:intron 60.0%
GTTCAAGGTCTACCGGCAGG+CGG - chr8_3:64310243-64310262 Msa1302000:intron 60.0%
AAGTAACCTCCTCCGCCTGC+CGG + chr8_3:64310258-64310277 None:intergenic 60.0%
CCCTGCATCATTTCCGGTCC+TGG + chr8_3:64310300-64310319 None:intergenic 60.0%
GTATGCAAGGCCACCTCCTG+AGG - chr8_3:64310440-64310459 Msa1302000:intron 60.0%
!! TGGCCCGGGTGCTGATTCAG+CGG + chr8_3:64309511-64309530 None:intergenic 65.0%
!! TGGTGGTGGAGGACCTGTGC+CGG - chr8_3:64309834-64309853 Msa1302000:CDS 65.0%
CCTCCACCTCCGCCACCAAT+TGG + chr8_3:64310066-64310085 None:intergenic 65.0%
!! CCAATTGGTGGCGGAGGTGG+AGG - chr8_3:64310063-64310082 Msa1302000:CDS 65.0%
!! ATTGGTGGCGGAGGTGGAGG+CGG - chr8_3:64310066-64310085 Msa1302000:CDS 65.0%
!! CAAGGTGGTGGTGGTGGTCC+AGG - chr8_3:64310279-64310298 Msa1302000:intron 65.0%
!! TGGTGGTGGTGGTCCAGGAC+CGG - chr8_3:64310284-64310303 Msa1302000:intron 65.0%
GGTCCTCCACCACCACCACC+AGG + chr8_3:64309829-64309848 None:intergenic 70.0%
CAAGGTCTACCGGCAGGCGG+AGG - chr8_3:64310246-64310265 Msa1302000:intron 70.0%
GGTCTACCGGCAGGCGGAGG+AGG - chr8_3:64310249-64310268 Msa1302000:intron 75.0%
!!! GGTGGCGGAGGTGGAGGCGG+TGG - chr8_3:64310069-64310088 Msa1302000:CDS 80.0%
! GGCGGAGGTGGAGGCGGTGG+TGG - chr8_3:64310072-64310091 Msa1302000:CDS 80.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 64308310 64310963 64308310 ID=Msa1302000;Name=Msa1302000
chr8_3 mRNA 64308310 64310963 64308310 ID=Msa1302000-mRNA-1;Parent=Msa1302000;Name=Msa1302000-mRNA-1;_AED=0.02;_eAED=0.02;_QI=381|1|1|1|1|1|3|406|522
chr8_3 exon 64308310 64310178 64308310 ID=Msa1302000-mRNA-1:exon:19400;Parent=Msa1302000-mRNA-1
chr8_3 exon 64310339 64310414 64310339 ID=Msa1302000-mRNA-1:exon:19399;Parent=Msa1302000-mRNA-1
chr8_3 exon 64310553 64310963 64310553 ID=Msa1302000-mRNA-1:exon:19398;Parent=Msa1302000-mRNA-1
chr8_3 five_prime_UTR 64310583 64310963 64310583 ID=Msa1302000-mRNA-1:five_prime_utr;Parent=Msa1302000-mRNA-1
chr8_3 CDS 64310553 64310582 64310553 ID=Msa1302000-mRNA-1:cds;Parent=Msa1302000-mRNA-1
chr8_3 CDS 64310339 64310414 64310339 ID=Msa1302000-mRNA-1:cds;Parent=Msa1302000-mRNA-1
chr8_3 CDS 64308716 64310178 64308716 ID=Msa1302000-mRNA-1:cds;Parent=Msa1302000-mRNA-1
chr8_3 three_prime_UTR 64308310 64308715 64308310 ID=Msa1302000-mRNA-1:three_prime_utr;Parent=Msa1302000-mRNA-1
Gene Sequence

>Msa1302000

ATGAGTAAAGAAGAATTTTTGAAGATACAGAAATCTGTTCTAAAAGTGAACATACACTGTGATGGATGTAAACACAAAGTAAAGAAAATCTTACAGAAAATTGATGGAGTATTTACAACTGAGATAGATGCAGAACAAGGGAAGGTCACAGTTTCAGGGAATGTGGACCCAAATGTTCTCATCAAGAAGCTTGCAAAATCAGGGAAACATGCCGAGTTATGGAGTGTTCCCAAACCAAACAATAATCAAAATAATAACCAGAACAACGTTGTTAATCAGTTAAAGAACATGCAAATTGACAATGGCAAAGGTGGTGGAAACAACAAAGGTCAGAATCAAAATCAGAATCAAAACCAGAAGGGTGGTGGAAACAATAACCAACCCAAAGGTGGTCAACAAATACAAATACAAGGACTAAATCCTCAGCAGCAGCAACAACTTCAGCTTCAACAACAGTTGCAACAACTTCAACAGATGAAAGGGTTTCAAGATCTAGCTCAATTTAAAGGCATGAAGATGCCGCTGAATCAGCACCCGGGCCAGAACCCGAATCAGAATCCTAAAGATGCTAAAGGTGTTAAATTTGATGTGCCTGAAGATGAGGATGATTTTAGTGATGATGAAATGGATGATTATGATGACGACGAAGATGATGATGAAGATTTTGATGATGAGTTTGATGATGAAATGGTTGGTTTGCCACCTAATAAGATGAAACCCCCTTCTATGCCTATGGGGAATGGTGCTCACATGATGTTGAATGGGAATCATCCACAGCTTATGAGTGCTATGAAGGGTGGCAATTTTAATGGTGGTGGTGGCGGAAATGGACAGAAACCTGGTGGTGGTGGTGGAGGACCTGTGCCGGTTCAAATTCACGGCATGAATGGTGGAAATGGCAATGGAGGAAAGAAAGGTGGTGGTGGTGGTGGAGGGAATAATCAGAATCAAGGTGGAGGTAACAAAAATAATGGTGGCATGCCAGAAGCTAAAAATAATGGCGGTGGAAACAAGAATGGAGGGAATAATGGTAGTAATCAAAATAACGATGGGGGTAAGAAGGGTATGTCGATACCAATTGGTGGCGGAGGTGGAGGCGGTGGTGGTAATGTTCAGGCTATGAATAATGGATTTCAAAAAATGATGGGTGGTGGAGGTGGTGGTCAATCTCATCCTGGTAGTATGGGTGGTGGAGGAAATAATATGGGGCCAATGAGTATGCCTATGAACCGAATGGGTGGTAACATTCCTGCTGTTCAAGGTCTACCGGCAGGCGGAGGAGGTTACTTTCAAGGTGGTGGTGGTGGTCCAGGACCGGAAATGATGCAGGGGAATCCATATCAGCAGCAGCAGCAGCAACAACAACAACAGCAACAGTTAATGGCTGCTGCAATGATGAATCAACGTGCTGCTATGGTGGAAAATGACCAGAGATTTCAGCAGCCAATGATGTATGCAAGGCCACCTCCTGAGGTGAATTACATGTATCCTCCTTACCCTTATCCTCCTCCAGATCCTTACTCACATGCTTTCAGCGATGAGAACACTTCCAGCTGCAATGTCATGTGA

Protein sequence

>Msa1302000

MSKEEFLKIQKSVLKVNIHCDGCKHKVKKILQKIDGVFTTEIDAEQGKVTVSGNVDPNVLIKKLAKSGKHAELWSVPKPNNNQNNNQNNVVNQLKNMQIDNGKGGGNNKGQNQNQNQNQKGGGNNNQPKGGQQIQIQGLNPQQQQQLQLQQQLQQLQQMKGFQDLAQFKGMKMPLNQHPGQNPNQNPKDAKGVKFDVPEDEDDFSDDEMDDYDDDEDDDEDFDDEFDDEMVGLPPNKMKPPSMPMGNGAHMMLNGNHPQLMSAMKGGNFNGGGGGNGQKPGGGGGGPVPVQIHGMNGGNGNGGKKGGGGGGGNNQNQGGGNKNNGGMPEAKNNGGGNKNGGNNGSNQNNDGGKKGMSIPIGGGGGGGGGNVQAMNNGFQKMMGGGGGGQSHPGSMGGGGNNMGPMSMPMNRMGGNIPAVQGLPAGGGGYFQGGGGGPGPEMMQGNPYQQQQQQQQQQQQLMAAAMMNQRAAMVENDQRFQQPMMYARPPPEVNYMYPPYPYPPPDPYSHAFSDENTSSCNVM*