AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1064210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1064210 MtrunA17_Chr7g0245211 95.565 248 5 3 1 243 1 247 2.55e-172 474
Msa1064210 MtrunA17_Chr1g0152491 44.295 149 72 3 95 240 44 184 1.09e-31 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1064210 AT1G32070.3 66.957 230 62 4 26 242 28 256 3.89e-104 302
Msa1064210 AT1G32070.1 66.234 231 63 4 26 242 27 256 4.04e-103 300
Msa1064210 AT1G32070.2 66.234 231 63 4 26 242 28 257 4.18e-103 300
Msa1064210 AT1G26220.1 41.353 133 67 2 109 240 67 189 2.69e-27 104

Find 80 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAACTTCCTTATCAATT+TGG 0.118919 7_2:+56720966 None:intergenic
TCCCATGGTTTGGGCGATTA+TGG 0.159377 7_2:-56720629 Msa1064210:three_prime_UTR
GAGATTGAGGGTTAGCATTT+TGG 0.208945 7_2:+56724048 None:intergenic
ATGCCTTCAATGCCACAATT+TGG 0.217116 7_2:-56722228 Msa1064210:CDS
TTCAGCTCAAGGCTGGATTT+TGG 0.218238 7_2:-56723823 Msa1064210:CDS
CTGAAAAGTCCTCAACTTTC+TGG 0.221139 7_2:+56723841 None:intergenic
AATGAACAAAAGATATTAAT+TGG 0.255156 7_2:-56722274 Msa1064210:CDS
CCCATGGTTTGGGCGATTAT+GGG 0.266425 7_2:-56720628 Msa1064210:three_prime_UTR
GAGCAAATATTGTTCTCTTC+AGG 0.294940 7_2:-56723027 Msa1064210:CDS
GAAAACTTCCTTATCAATTT+GGG 0.297922 7_2:+56720967 None:intergenic
GCTGACCCAGAGGGCATAAA+AGG 0.303809 7_2:-56721002 Msa1064210:CDS
AACAGATAATGGTGAGGCTT+TGG 0.342077 7_2:-56720782 Msa1064210:three_prime_UTR
TGCCTTCAATGCCACAATTT+GGG 0.345095 7_2:-56722227 Msa1064210:CDS
CATCCTGTAATTACTGTGTT+AGG 0.361827 7_2:-56720850 Msa1064210:three_prime_UTR
TGAGCATTCATCCCATGGTT+TGG 0.372224 7_2:-56720639 Msa1064210:three_prime_UTR
TGATACAATACAACAGTGTT+TGG 0.374094 7_2:-56724119 None:intergenic
ATGGGATGAATGCTCATTTC+AGG 0.376094 7_2:+56720646 None:intergenic
GAGCATTCATCCCATGGTTT+GGG 0.378208 7_2:-56720638 Msa1064210:three_prime_UTR
GCTGTAACGTTGTAAACTTC+AGG 0.387745 7_2:+56720913 None:intergenic
ATTCTATAGGGCCAAGGTCT+TGG 0.389671 7_2:-56721240 Msa1064210:intron
CAACCTAACACAGTAATTAC+AGG 0.393879 7_2:+56720847 None:intergenic
AATACAACAGTGTTTGGTTT+GGG 0.398489 7_2:-56724113 None:intergenic
GCAGCAGCTAATTTCGATAA+TGG 0.399700 7_2:+56722497 None:intergenic
CAATACAACAGTGTTTGGTT+TGG 0.403562 7_2:-56724114 None:intergenic
AGAAAGAGAATTGAGATTGA+GGG 0.407089 7_2:+56724036 None:intergenic
AAGAAAGAGAATTGAGATTG+AGG 0.421988 7_2:+56724035 None:intergenic
ATTTGCTCAATTGTTCCATC+AGG 0.431467 7_2:+56723042 None:intergenic
AAAGGGTAATTAAGATTAGC+AGG 0.433746 7_2:+56723962 None:intergenic
TAGTATGAAAGTATAAAGAT+TGG 0.439306 7_2:-56720877 Msa1064210:three_prime_UTR
AGGGCATAAAAGGCATGTTC+TGG 0.444015 7_2:-56720992 Msa1064210:CDS
TCTTCTTCTTCTGTTAACTC+TGG 0.444310 7_2:+56723111 None:intergenic
ATCCCAAATTGTGGCATTGA+AGG 0.446021 7_2:+56722225 None:intergenic
TGCCAAAGTACCTGGTAGCC+TGG 0.451629 7_2:+56722190 None:intergenic
TCAGTGTGTAAGAGGAGTAT+AGG 0.457011 7_2:-56720681 Msa1064210:three_prime_UTR
TGAGTAAAGAGTGGATGAAA+GGG 0.463982 7_2:+56724001 None:intergenic
TTCTGGTACCCAAATTGATA+AGG 0.478814 7_2:-56720975 Msa1064210:exon
CCTAGTTGATCCAGGCTACC+AGG 0.486692 7_2:-56722200 Msa1064210:intron
TTGAGTAAAGAGTGGATGAA+AGG 0.490999 7_2:+56724000 None:intergenic
ATAAGAAAGTCACCAGGGTC+AGG 0.499788 7_2:-56722437 Msa1064210:intron
TGGGATGTCCTAGTTGATCC+AGG 0.505992 7_2:-56722208 Msa1064210:CDS
TTTGACCTGTATTAGCAAAA+GGG 0.511224 7_2:+56723945 None:intergenic
ACAACAGTGTTTGGTTTGGG+TGG 0.515395 7_2:-56724110 Msa1064210:five_prime_UTR
TTTGGGAGTCAATTAAATCT+GGG 0.516563 7_2:-56723805 Msa1064210:intron
CCCATAATCGCCCAAACCAT+GGG 0.518854 7_2:+56720628 None:intergenic
ACCCATAATCGCCCAAACCA+TGG 0.539178 7_2:+56720627 None:intergenic
TGGTTGTATCAGTGTGTAAG+AGG 0.540970 7_2:-56720689 Msa1064210:three_prime_UTR
CAAATATTGTTCTCTTCAGG+TGG 0.543956 7_2:-56723024 Msa1064210:CDS
GATTTGATTCTATAGGGCCA+AGG 0.548964 7_2:-56721246 Msa1064210:intron
CAAGAGCTTTACCAAGACCT+TGG 0.549605 7_2:+56721229 None:intergenic
AGCACAAACTCTTGAGGTAG+AGG 0.550148 7_2:+56723081 None:intergenic
AATACCAACACTTAGAGAGT+AGG 0.553304 7_2:+56720574 None:intergenic
TCTCCCTACTCTCTAAGTGT+TGG 0.553519 7_2:-56720578 Msa1064210:three_prime_UTR
CCTGGTAGCCTGGATCAACT+AGG 0.553781 7_2:+56722200 None:intergenic
ACAAAAGATATTAATTGGCA+TGG 0.555166 7_2:-56722269 Msa1064210:CDS
ATACCAACACTTAGAGAGTA+GGG 0.557357 7_2:+56720575 None:intergenic
TGAAATGAGCATTCATCCCA+TGG 0.559753 7_2:-56720644 Msa1064210:three_prime_UTR
AAATTGTGGCATTGAAGGCA+TGG 0.561363 7_2:+56722230 None:intergenic
AACTGAGTTTGAGTAAAGAG+TGG 0.562198 7_2:+56723992 None:intergenic
GGCATGGTCTGATGTAGCAC+GGG 0.584570 7_2:+56722246 None:intergenic
GGGTTTGAAGCTGACCCAGA+GGG 0.584967 7_2:-56721011 Msa1064210:CDS
GATACGCACCTTGTCACAGA+GGG 0.585718 7_2:+56722975 None:intergenic
TCAACAAGCACAAACTCTTG+AGG 0.586333 7_2:+56723075 None:intergenic
ACTTTGTTCGCAGATAGTAA+AGG 0.599684 7_2:-56721159 Msa1064210:intron
AACTAGGACATCCCAAATTG+TGG 0.601622 7_2:+56722216 None:intergenic
TCTTCAAGCCCTCTGTGACA+AGG 0.604383 7_2:-56722983 Msa1064210:intron
ATATTATTATTACCTGACCC+TGG 0.611994 7_2:+56722425 None:intergenic
AGGCATGGTCTGATGTAGCA+CGG 0.613503 7_2:+56722245 None:intergenic
GTTGAAAAGACTGAACCTGA+TGG 0.616747 7_2:-56723057 Msa1064210:CDS
TATTCTATAAGAAAGTCACC+AGG 0.624420 7_2:-56722443 Msa1064210:CDS
TTTCAGCTACCAGAAAGTTG+AGG 0.631114 7_2:-56723850 Msa1064210:intron
CATCTCTTTAACAGGTAGGG+TGG 0.637083 7_2:-56722529 Msa1064210:intron
AACAGGTAGGGTGGCCTCGT+AGG 0.640562 7_2:-56722520 Msa1064210:intron
AAAGAAGTAGAAAATAACAC+TGG 0.648497 7_2:+56720751 None:intergenic
AATTTCGATAATGGCCTACG+AGG 0.672834 7_2:+56722506 None:intergenic
AGGGTTTGAAGCTGACCCAG+AGG 0.695850 7_2:-56721012 Msa1064210:CDS
CTCTGGATCGATGACCTGTG+TGG 0.696955 7_2:+56723128 None:intergenic
ATTCTATAAGAAAGTCACCA+GGG 0.724149 7_2:-56722442 Msa1064210:CDS
GATGAAGAATAACACCACAC+AGG 0.731975 7_2:-56723142 Msa1064210:CDS
AGATACGCACCTTGTCACAG+AGG 0.742856 7_2:+56722974 None:intergenic
CTTTCTTATAGAATACAGAG+AGG 0.746297 7_2:+56722451 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAATACAATTCAAA+GGG - chr7_2:56720887-56720906 Msa1064210:three_prime_UTR 10.0%
!!! ATTGTATTTAATTTTCAGAA+TGG + chr7_2:56720882-56720901 None:intergenic 15.0%
!! GAAAATTAAATACAATTCAA+AGG - chr7_2:56720886-56720905 Msa1064210:three_prime_UTR 15.0%
!! AAATTAAATACAATTCAAAG+GGG - chr7_2:56720888-56720907 Msa1064210:three_prime_UTR 15.0%
!!! GAACATAATCATATTTTTTT+GGG + chr7_2:56721196-56721215 None:intergenic 15.0%
!!! TTTTAGTTTTTTATACGTAT+AGG - chr7_2:56721339-56721358 Msa1064210:intron 15.0%
!! AATATAGATACAAAAATGAA+AGG + chr7_2:56721858-56721877 None:intergenic 15.0%
!! AATGAACAAAAGATATTAAT+TGG - chr7_2:56722367-56722386 Msa1064210:intron 15.0%
!! TTTAAATTAATATGACATCT+AGG + chr7_2:56722809-56722828 None:intergenic 15.0%
!! CATAAAAGATAAAAGTAATT+TGG + chr7_2:56723294-56723313 None:intergenic 15.0%
!! TGAAAAAGTAATAAAACTTT+GGG + chr7_2:56723839-56723858 None:intergenic 15.0%
!! TTGAAAAAGTAATAAAACTT+TGG + chr7_2:56723840-56723859 None:intergenic 15.0%
!!! GGAACATAATCATATTTTTT+TGG + chr7_2:56721197-56721216 None:intergenic 20.0%
!! ATACACTAATAATCATAACA+TGG + chr7_2:56721438-56721457 None:intergenic 20.0%
!! AAATTATTAAACTATACCGA+AGG + chr7_2:56721964-56721983 None:intergenic 20.0%
!! TTGTATTCAAAATCTATGTT+TGG + chr7_2:56722478-56722497 None:intergenic 20.0%
!!! ATAGATTTTGAATACAAACT+CGG - chr7_2:56722481-56722500 Msa1064210:CDS 20.0%
!! CTAAATTAGAAATGAATAGA+CGG - chr7_2:56722600-56722619 Msa1064210:intron 20.0%
!! TTTAAATTAAACAAACCCAA+AGG + chr7_2:56722768-56722787 None:intergenic 20.0%
!!! AATACGTTTTACATAAGTAT+TGG - chr7_2:56722987-56723006 Msa1064210:CDS 20.0%
!!! ATACGTTTTACATAAGTATT+GGG - chr7_2:56722988-56723007 Msa1064210:CDS 20.0%
!! ACAAATTTGAAAAACACATT+AGG - chr7_2:56723245-56723264 Msa1064210:intron 20.0%
!!! AAAAACACATTAGGTATTTT+TGG - chr7_2:56723254-56723273 Msa1064210:intron 20.0%
!! GGTTTATGTAAAATAGAAAT+TGG - chr7_2:56723550-56723569 Msa1064210:intron 20.0%
!!! TAGTATGAAAGTATAAAGAT+TGG - chr7_2:56723764-56723783 Msa1064210:intron 20.0%
!! AAAAAGTAATAAAACTTTGG+GGG + chr7_2:56723837-56723856 None:intergenic 20.0%
!! GAAAAAGTAATAAAACTTTG+GGG + chr7_2:56723838-56723857 None:intergenic 20.0%
!!! TTACTTTTTCAAACAGATAA+TGG - chr7_2:56723848-56723867 Msa1064210:intron 20.0%
!!! TAAGTGTTGGTATTATTTTA+TGG - chr7_2:56724076-56724095 Msa1064210:five_prime_UTR 20.0%
!!! ATTTTATGGATAAATGTTAG+CGG - chr7_2:56724090-56724109 Msa1064210:five_prime_UTR 20.0%
!!! TTGTTGTTTGTTTTCTCTTT+TGG - chr7_2:56720768-56720787 Msa1064210:three_prime_UTR 25.0%
!! TTTAAAGTTTAAACCCACTT+GGG - chr7_2:56721024-56721043 Msa1064210:CDS 25.0%
! AGTCTTAGATTTCAACAATA+AGG + chr7_2:56721218-56721237 None:intergenic 25.0%
!!! TCTTGGCAATCTTTTTATTT+TGG + chr7_2:56721245-56721264 None:intergenic 25.0%
! CTAAAAATTGTATCCACAAA+GGG + chr7_2:56721325-56721344 None:intergenic 25.0%
! ACTAAAAATTGTATCCACAA+AGG + chr7_2:56721326-56721345 None:intergenic 25.0%
! GAAGAAATAAGTTCTTAATG+TGG + chr7_2:56721836-56721855 None:intergenic 25.0%
! ATTACAATGTTAAACAACAC+AGG + chr7_2:56721993-56722012 None:intergenic 25.0%
! TATTATATGAAACTCTTCCT+TGG - chr7_2:56722076-56722095 Msa1064210:intron 25.0%
! AAATAGTTCATCTCTTTAAC+AGG - chr7_2:56722104-56722123 Msa1064210:intron 25.0%
!!! TGCTTTGAAAAATAGCTATA+TGG - chr7_2:56722164-56722183 Msa1064210:intron 25.0%
! TTTGAAAAATAGCTATATGG+TGG - chr7_2:56722167-56722186 Msa1064210:intron 25.0%
! TTGTGATTAAGTTAATTCGT+TGG - chr7_2:56722255-56722274 Msa1064210:CDS 25.0%
! CACTAAGATATTCATCAAAT+AGG + chr7_2:56722319-56722338 None:intergenic 25.0%
! ACAAAAGATATTAATTGGCA+TGG - chr7_2:56722372-56722391 Msa1064210:intron 25.0%
!! TAGATTTTGAATACAAACTC+GGG - chr7_2:56722482-56722501 Msa1064210:CDS 25.0%
! CATTAAAAAAGTGAACCTTT+AGG + chr7_2:56722686-56722705 None:intergenic 25.0%
!!! CTAAAGGTTCACTTTTTTAA+TGG - chr7_2:56722684-56722703 Msa1064210:intron 25.0%
!!! TCACTTTTTTAATGGTTTCA+TGG - chr7_2:56722692-56722711 Msa1064210:intron 25.0%
! ATTCAAACAGTTGTTGAAAT+GGG - chr7_2:56722882-56722901 Msa1064210:intron 25.0%
!!! ATAAGTATTGGGATTCATTT+AGG - chr7_2:56722999-56723018 Msa1064210:CDS 25.0%
!!! ATTAGGTATTTTTGGATTCA+GGG - chr7_2:56723262-56723281 Msa1064210:intron 25.0%
! TCCAGTATAAACATAGATTA+TGG - chr7_2:56723338-56723357 Msa1064210:intron 25.0%
!!! TGATGTTGATTTGATTCTAT+AGG - chr7_2:56723388-56723407 Msa1064210:intron 25.0%
!!! GATGTTGATTTGATTCTATA+GGG - chr7_2:56723389-56723408 Msa1064210:intron 25.0%
!! TGGAATTTTATCGCAATTTA+GGG - chr7_2:56723610-56723629 Msa1064210:intron 25.0%
! GAAAACTTCCTTATCAATTT+GGG + chr7_2:56723677-56723696 None:intergenic 25.0%
! AGAAAACTTCCTTATCAATT+TGG + chr7_2:56723678-56723697 None:intergenic 25.0%
! AAAGAAGTAGAAAATAACAC+TGG + chr7_2:56723893-56723912 None:intergenic 25.0%
!! TTTTTGTCATCTTGAATGTA+TGG - chr7_2:56723932-56723951 Msa1064210:intron 25.0%
!! TAGCATTTTGGATTGGAATT+TGG + chr7_2:56720584-56720603 None:intergenic 30.0%
AGAAAGAGAATTGAGATTGA+GGG + chr7_2:56720608-56720627 None:intergenic 30.0%
AAGAAAGAGAATTGAGATTG+AGG + chr7_2:56720609-56720628 None:intergenic 30.0%
AAAGGGTAATTAAGATTAGC+AGG + chr7_2:56720682-56720701 None:intergenic 30.0%
! AATTACCCTTTTGCTAATAC+AGG - chr7_2:56720691-56720710 Msa1064210:three_prime_UTR 30.0%
TTTGACCTGTATTAGCAAAA+GGG + chr7_2:56720699-56720718 None:intergenic 30.0%
! TTTTGACCTGTATTAGCAAA+AGG + chr7_2:56720700-56720719 None:intergenic 30.0%
!! TTTTGGGAGTCAATTAAATC+TGG - chr7_2:56720835-56720854 Msa1064210:three_prime_UTR 30.0%
TTTGGGAGTCAATTAAATCT+GGG - chr7_2:56720836-56720855 Msa1064210:three_prime_UTR 30.0%
ACAATTGTTAGCATGTAGAA+TGG - chr7_2:56720954-56720973 Msa1064210:three_prime_UTR 30.0%
GGAATAATTAACTGCTTTAG+AGG - chr7_2:56720975-56720994 Msa1064210:exon 30.0%
TGTTAATCAACTTGCATGTA+TGG - chr7_2:56721001-56721020 Msa1064210:CDS 30.0%
! GTTTAAAGTTTAAACCCACT+TGG - chr7_2:56721023-56721042 Msa1064210:CDS 30.0%
ACCAGAATGTAAGTAAAGTT+TGG + chr7_2:56721138-56721157 None:intergenic 30.0%
!!! TGGCAATCTTTTTATTTTGG+TGG + chr7_2:56721242-56721261 None:intergenic 30.0%
! TCATAAACCACATTTTGTCT+TGG + chr7_2:56721262-56721281 None:intergenic 30.0%
TGAAAGGAGAAACATGTTAA+GGG + chr7_2:56721475-56721494 None:intergenic 30.0%
TTATTCTTCATCAACCTGAA+AGG + chr7_2:56721491-56721510 None:intergenic 30.0%
AACTAGCATACACATAATCA+CGG + chr7_2:56721740-56721759 None:intergenic 30.0%
TTGAGTTCTTAATGTTGCTA+AGG + chr7_2:56721909-56721928 None:intergenic 30.0%
GATGAACTATTTAGTAACCA+AGG + chr7_2:56722096-56722115 None:intergenic 30.0%
CTTTCTTATAGAATACAGAG+AGG + chr7_2:56722193-56722212 None:intergenic 30.0%
TATTCTATAAGAAAGTCACC+AGG - chr7_2:56722198-56722217 Msa1064210:intron 30.0%
ATTCTATAAGAAAGTCACCA+GGG - chr7_2:56722199-56722218 Msa1064210:intron 30.0%
ATATTATTATTACCTGACCC+TGG + chr7_2:56722219-56722238 None:intergenic 30.0%
GATTAAGTTAATTCGTTGGA+TGG - chr7_2:56722259-56722278 Msa1064210:CDS 30.0%
GATGAATATCTTAGTGTACT+TGG - chr7_2:56722323-56722342 Msa1064210:intron 30.0%
! TTTTAATGGTTTCATGGTTC+TGG - chr7_2:56722698-56722717 Msa1064210:intron 30.0%
GATTCAAACAGTTGTTGAAA+TGG - chr7_2:56722881-56722900 Msa1064210:intron 30.0%
!! AAAAGAACACTGCTTTTGTA+TGG + chr7_2:56723113-56723132 None:intergenic 30.0%
!!! CAGTGTTCTTTTTTGTTTCA+AGG - chr7_2:56723121-56723140 Msa1064210:CDS 30.0%
! ATTTAACTTTCCCTAAGTGA+GGG + chr7_2:56723195-56723214 None:intergenic 30.0%
!!! CATTAGGTATTTTTGGATTC+AGG - chr7_2:56723261-56723280 Msa1064210:intron 30.0%
GCCATAATCTATGTTTATAC+TGG + chr7_2:56723342-56723361 None:intergenic 30.0%
! GTGGAATTTTATCGCAATTT+AGG - chr7_2:56723609-56723628 Msa1064210:intron 30.0%
!! TTTTCAAACAGATAATGGTG+AGG - chr7_2:56723853-56723872 Msa1064210:intron 30.0%
CAACAAAGAACCAAAAACAT+TGG + chr7_2:56724040-56724059 None:intergenic 30.0%
!! TTAGCGGTTATTTTGTTTGA+TGG - chr7_2:56724106-56724125 Msa1064210:five_prime_UTR 30.0%
TGAGTAAAGAGTGGATGAAA+GGG + chr7_2:56720643-56720662 None:intergenic 35.0%
TTGAGTAAAGAGTGGATGAA+AGG + chr7_2:56720644-56720663 None:intergenic 35.0%
AACTGAGTTTGAGTAAAGAG+TGG + chr7_2:56720652-56720671 None:intergenic 35.0%
CAAAAAACACTCTTTCTCAC+TGG - chr7_2:56720715-56720734 Msa1064210:three_prime_UTR 35.0%
GCCAAACTTTACTTACATTC+TGG - chr7_2:56721134-56721153 Msa1064210:intron 35.0%
AAGATTGCCAAGACAAAATG+TGG - chr7_2:56721252-56721271 Msa1064210:intron 35.0%
AGTCTTAGATTTCAGCAACA+AGG + chr7_2:56721386-56721405 None:intergenic 35.0%
CTGAAAGGAGAAACATGTTA+AGG + chr7_2:56721476-56721495 None:intergenic 35.0%
CTTAACATGTTTCTCCTTTC+AGG - chr7_2:56721474-56721493 Msa1064210:intron 35.0%
TCTTCTTCTTCTGTTAACTC+TGG + chr7_2:56721533-56721552 None:intergenic 35.0%
ATTTGCTCAATTGTTCCATC+AGG + chr7_2:56721602-56721621 None:intergenic 35.0%
GAGCAAATATTGTTCTCTTC+AGG - chr7_2:56721614-56721633 Msa1064210:intron 35.0%
CAAATATTGTTCTCTTCAGG+TGG - chr7_2:56721617-56721636 Msa1064210:intron 35.0%
GTGCACTCAATTCATATTTG+AGG - chr7_2:56721797-56721816 Msa1064210:intron 35.0%
AGTTCATCTCTTTAACAGGT+AGG - chr7_2:56722108-56722127 Msa1064210:intron 35.0%
GTTCATCTCTTTAACAGGTA+GGG - chr7_2:56722109-56722128 Msa1064210:intron 35.0%
TTGGTGAAGTTATTTGACAG+AGG - chr7_2:56722342-56722361 Msa1064210:intron 35.0%
TGGTGAAGTTATTTGACAGA+GGG - chr7_2:56722343-56722362 Msa1064210:intron 35.0%
CTCTACTAAAGCAAATGTCT+TGG + chr7_2:56722725-56722744 None:intergenic 35.0%
CAAGACATTTGCTTTAGTAG+AGG - chr7_2:56722723-56722742 Msa1064210:intron 35.0%
! AGTTCTAACGAGGAAATGAA+TGG + chr7_2:56723089-56723108 None:intergenic 35.0%
! TTTGTATGGAAGTTCTAACG+AGG + chr7_2:56723099-56723118 None:intergenic 35.0%
CAAGTAGAGTGGTTCAAAAA+GGG + chr7_2:56723151-56723170 None:intergenic 35.0%
TCAAGTAGAGTGGTTCAAAA+AGG + chr7_2:56723152-56723171 None:intergenic 35.0%
! CATTTAACTTTCCCTAAGTG+AGG + chr7_2:56723196-56723215 None:intergenic 35.0%
TTATACTGGAACAGAACACA+AGG + chr7_2:56723328-56723347 None:intergenic 35.0%
ACTTTGTTCGCAGATAGTAA+AGG - chr7_2:56723482-56723501 Msa1064210:intron 35.0%
TTGAATTTCATGCGCTTTCA+TGG - chr7_2:56723529-56723548 Msa1064210:intron 35.0%
!! TTGTATTTTGAATGCAGTCG+TGG - chr7_2:56723590-56723609 Msa1064210:intron 35.0%
TTCTGGTACCCAAATTGATA+AGG - chr7_2:56723666-56723685 Msa1064210:intron 35.0%
CATCCTGTAATTACTGTGTT+AGG - chr7_2:56723791-56723810 Msa1064210:intron 35.0%
CAACCTAACACAGTAATTAC+AGG + chr7_2:56723797-56723816 None:intergenic 35.0%
! GATTATGGGTCCAATGTTTT+TGG - chr7_2:56724027-56724046 Msa1064210:CDS 35.0%
ATACCAACACTTAGAGAGTA+GGG + chr7_2:56724069-56724088 None:intergenic 35.0%
AATACCAACACTTAGAGAGT+AGG + chr7_2:56724070-56724089 None:intergenic 35.0%
!! TGAGGGTTAGCATTTTGGAT+TGG + chr7_2:56720591-56720610 None:intergenic 40.0%
!! GAGATTGAGGGTTAGCATTT+TGG + chr7_2:56720596-56720615 None:intergenic 40.0%
TTTCAGCTACCAGAAAGTTG+AGG - chr7_2:56720791-56720810 Msa1064210:three_prime_UTR 40.0%
CTGAAAAGTCCTCAACTTTC+TGG + chr7_2:56720803-56720822 None:intergenic 40.0%
!! TAGCTTGGTGGTATTGACTT+GGG - chr7_2:56721048-56721067 Msa1064210:intron 40.0%
!! GTGGTATTGACTTGGGAATT+GGG - chr7_2:56721055-56721074 Msa1064210:intron 40.0%
TTGGCCAACTATTGTTCTCA+CGG + chr7_2:56721119-56721138 None:intergenic 40.0%
!!! TTTTTTTGGGCTTAACCCTC+CGG + chr7_2:56721183-56721202 None:intergenic 40.0%
!! CTTTTCCTTGTTTCCCTTTG+TGG - chr7_2:56721309-56721328 Msa1064210:intron 40.0%
TGTATCCACAAAGGGAAACA+AGG + chr7_2:56721317-56721336 None:intergenic 40.0%
AAGACTGCTGAGACAATATG+CGG - chr7_2:56721400-56721419 Msa1064210:intron 40.0%
GATGAAGAATAACACCACAC+AGG - chr7_2:56721499-56721518 Msa1064210:intron 40.0%
TCAACAAGCACAAACTCTTG+AGG + chr7_2:56721569-56721588 None:intergenic 40.0%
GTTGAAAAGACTGAACCTGA+TGG - chr7_2:56721584-56721603 Msa1064210:intron 40.0%
ATCCTCACAAGAGTTTCCTT+CGG - chr7_2:56721945-56721964 Msa1064210:intron 40.0%
! AATTTCGATAATGGCCTACG+AGG + chr7_2:56722138-56722157 None:intergenic 40.0%
GCAGCAGCTAATTTCGATAA+TGG + chr7_2:56722147-56722166 None:intergenic 40.0%
GGTGAAGTTATTTGACAGAG+GGG - chr7_2:56722344-56722363 Msa1064210:intron 40.0%
! AAATTGTGGCATTGAAGGCA+TGG + chr7_2:56722414-56722433 None:intergenic 40.0%
ATGCCTTCAATGCCACAATT+TGG - chr7_2:56722413-56722432 Msa1064210:intron 40.0%
TGCCTTCAATGCCACAATTT+GGG - chr7_2:56722414-56722433 Msa1064210:intron 40.0%
! ATCCCAAATTGTGGCATTGA+AGG + chr7_2:56722419-56722438 None:intergenic 40.0%
AACTAGGACATCCCAAATTG+TGG + chr7_2:56722428-56722447 None:intergenic 40.0%
TGCTCTCATATGTAGCCTAA+AGG - chr7_2:56722668-56722687 Msa1064210:intron 40.0%
AAAGGCCATATGACATATGG+TGG + chr7_2:56722750-56722769 None:intergenic 40.0%
ACCATATGTCATATGGCCTT+TGG - chr7_2:56722749-56722768 Msa1064210:intron 40.0%
CCATATGTCATATGGCCTTT+GGG - chr7_2:56722750-56722769 Msa1064210:intron 40.0%
CTAACGAACATCAAGTAGAG+TGG + chr7_2:56723162-56723181 None:intergenic 40.0%
GATTTGATTCTATAGGGCCA+AGG - chr7_2:56723395-56723414 Msa1064210:intron 40.0%
! TCATTCGAGCTCTTTTGCAA+AGG - chr7_2:56723444-56723463 Msa1064210:intron 40.0%
! CATTCGAGCTCTTTTGCAAA+GGG - chr7_2:56723445-56723464 Msa1064210:intron 40.0%
GCTGTAACGTTGTAAACTTC+AGG + chr7_2:56723731-56723750 None:intergenic 40.0%
! AACAGATAATGGTGAGGCTT+TGG - chr7_2:56723859-56723878 Msa1064210:intron 40.0%
TGGTTGTATCAGTGTGTAAG+AGG - chr7_2:56723952-56723971 Msa1064210:CDS 40.0%
! TCAGTGTGTAAGAGGAGTAT+AGG - chr7_2:56723960-56723979 Msa1064210:CDS 40.0%
ATGGGATGAATGCTCATTTC+AGG + chr7_2:56723998-56724017 None:intergenic 40.0%
TGAAATGAGCATTCATCCCA+TGG - chr7_2:56723997-56724016 Msa1064210:CDS 40.0%
! GTTGAGGACTTTTCAGCTCA+AGG - chr7_2:56720807-56720826 Msa1064210:three_prime_UTR 45.0%
! TTCAGCTCAAGGCTGGATTT+TGG - chr7_2:56720818-56720837 Msa1064210:three_prime_UTR 45.0%
! TCAGCTCAAGGCTGGATTTT+GGG - chr7_2:56720819-56720838 Msa1064210:three_prime_UTR 45.0%
!! CTAGCTTGGTGGTATTGACT+TGG - chr7_2:56721047-56721066 Msa1064210:intron 45.0%
!! GGTGGTATTGACTTGGGAAT+TGG - chr7_2:56721054-56721073 Msa1064210:intron 45.0%
TTGAACCTGAGACCTTGAGA+AGG + chr7_2:56721089-56721108 None:intergenic 45.0%
TCTCCCGTGAGAACAATAGT+TGG - chr7_2:56721112-56721131 Msa1064210:intron 45.0%
TGGCCAACTATTGTTCTCAC+GGG + chr7_2:56721118-56721137 None:intergenic 45.0%
CTTACATTCTGGTCGAACTC+CGG - chr7_2:56721145-56721164 Msa1064210:intron 45.0%
AGCACAAACTCTTGAGGTAG+AGG + chr7_2:56721563-56721582 None:intergenic 45.0%
ATGAATTGAGTGCACGCACA+TGG + chr7_2:56721792-56721811 None:intergenic 45.0%
TACCGAAGGAAACTCTTGTG+AGG + chr7_2:56721950-56721969 None:intergenic 45.0%
CATCTCTTTAACAGGTAGGG+TGG - chr7_2:56722112-56722131 Msa1064210:intron 45.0%
ATAAGAAAGTCACCAGGGTC+AGG - chr7_2:56722204-56722223 Msa1064210:CDS 45.0%
! TGTTTGGTTGCCAAAGTACC+TGG + chr7_2:56722462-56722481 None:intergenic 45.0%
GAGGACCACCATATGTCATA+TGG - chr7_2:56722742-56722761 Msa1064210:intron 45.0%
CCCAAAGGCCATATGACATA+TGG + chr7_2:56722753-56722772 None:intergenic 45.0%
TAGAGTGGTTCAAAAAGGGC+TGG + chr7_2:56723147-56723166 None:intergenic 45.0%
TACTGGAACAGAACACAAGG+AGG + chr7_2:56723325-56723344 None:intergenic 45.0%
ATTCTATAGGGCCAAGGTCT+TGG - chr7_2:56723401-56723420 Msa1064210:intron 45.0%
CAAGAGCTTTACCAAGACCT+TGG + chr7_2:56723415-56723434 None:intergenic 45.0%
! GCTCTTTTGCAAAGGGACAT+CGG - chr7_2:56723452-56723471 Msa1064210:intron 45.0%
! ACATGCCTTTTATGCCCTCT+GGG + chr7_2:56723647-56723666 None:intergenic 45.0%
! AACATGCCTTTTATGCCCTC+TGG + chr7_2:56723648-56723667 None:intergenic 45.0%
! AGGGCATAAAAGGCATGTTC+TGG - chr7_2:56723649-56723668 Msa1064210:intron 45.0%
TGAGCATTCATCCCATGGTT+TGG - chr7_2:56724002-56724021 Msa1064210:CDS 45.0%
GAGCATTCATCCCATGGTTT+GGG - chr7_2:56724003-56724022 Msa1064210:CDS 45.0%
TCTCCCTACTCTCTAAGTGT+TGG - chr7_2:56724063-56724082 Msa1064210:exon 45.0%
! AGGACTTTTCAGCTCAAGGC+TGG - chr7_2:56720811-56720830 Msa1064210:three_prime_UTR 50.0%
!! TAAACCCACTTGGGCTAGCT+TGG - chr7_2:56721033-56721052 Msa1064210:CDS 50.0%
TCTTCAAGCCCTCTGTGACA+AGG - chr7_2:56721658-56721677 Msa1064210:intron 50.0%
GATACGCACCTTGTCACAGA+GGG + chr7_2:56721669-56721688 None:intergenic 50.0%
AGATACGCACCTTGTCACAG+AGG + chr7_2:56721670-56721689 None:intergenic 50.0%
AGGCATGGTCTGATGTAGCA+CGG + chr7_2:56722399-56722418 None:intergenic 50.0%
TGGGATGTCCTAGTTGATCC+AGG - chr7_2:56722433-56722452 Msa1064210:intron 50.0%
ATCCAGGCTACCAGGTACTT+TGG - chr7_2:56722449-56722468 Msa1064210:CDS 50.0%
ACTTTCCCTAAGTGAGGGTG+TGG + chr7_2:56723190-56723209 None:intergenic 50.0%
! TCCCATGGTTTGGGCGATTA+TGG - chr7_2:56724012-56724031 Msa1064210:CDS 50.0%
CCCATAATCGCCCAAACCAT+GGG + chr7_2:56724016-56724035 None:intergenic 50.0%
! CCCATGGTTTGGGCGATTAT+GGG - chr7_2:56724013-56724032 Msa1064210:CDS 50.0%
ACCCATAATCGCCCAAACCA+TGG + chr7_2:56724017-56724036 None:intergenic 50.0%
ACCACCAAGCTAGCCCAAGT+GGG + chr7_2:56721040-56721059 None:intergenic 55.0%
TACCACCAAGCTAGCCCAAG+TGG + chr7_2:56721041-56721060 None:intergenic 55.0%
! TGGGAGTGTGCTCCTTCTCA+AGG - chr7_2:56721074-56721093 Msa1064210:intron 55.0%
GTGCTCCTTCTCAAGGTCTC+AGG - chr7_2:56721081-56721100 Msa1064210:intron 55.0%
TGGTCGAACTCCGGATTACC+AGG - chr7_2:56721154-56721173 Msa1064210:intron 55.0%
GGTCGAACTCCGGATTACCA+GGG - chr7_2:56721155-56721174 Msa1064210:intron 55.0%
ACTCCGGATTACCAGGGAAC+CGG - chr7_2:56721161-56721180 Msa1064210:CDS 55.0%
CTCTGGATCGATGACCTGTG+TGG + chr7_2:56721516-56721535 None:intergenic 55.0%
GGCATGGTCTGATGTAGCAC+GGG + chr7_2:56722398-56722417 None:intergenic 55.0%
CCTGGTAGCCTGGATCAACT+AGG + chr7_2:56722444-56722463 None:intergenic 55.0%
CCTAGTTGATCCAGGCTACC+AGG - chr7_2:56722441-56722460 Msa1064210:CDS 55.0%
! TGCCAAAGTACCTGGTAGCC+TGG + chr7_2:56722454-56722473 None:intergenic 55.0%
! TTCCCTAAGTGAGGGTGTGG+CGG + chr7_2:56723187-56723206 None:intergenic 55.0%
! AGGGTTTGAAGCTGACCCAG+AGG - chr7_2:56723629-56723648 Msa1064210:intron 55.0%
! GGGTTTGAAGCTGACCCAGA+GGG - chr7_2:56723630-56723649 Msa1064210:intron 55.0%
! GCTGACCCAGAGGGCATAAA+AGG - chr7_2:56723639-56723658 Msa1064210:intron 55.0%
!! ACCCACTTGGGCTAGCTTGG+TGG - chr7_2:56721036-56721055 Msa1064210:CDS 60.0%
CCTCCGGTTCCCTGGTAATC+CGG + chr7_2:56721167-56721186 None:intergenic 60.0%
CGGATTACCAGGGAACCGGA+GGG - chr7_2:56721165-56721184 Msa1064210:CDS 60.0%
AACAGGTAGGGTGGCCTCGT+AGG - chr7_2:56722121-56722140 Msa1064210:intron 60.0%
ACCCGCCACACCCTCACTTA+GGG - chr7_2:56723182-56723201 Msa1064210:intron 60.0%
! TCCCTAAGTGAGGGTGTGGC+GGG + chr7_2:56723186-56723205 None:intergenic 60.0%
CCGGATTACCAGGGAACCGG+AGG - chr7_2:56721164-56721183 Msa1064210:CDS 65.0%
GGCTTAACCCTCCGGTTCCC+TGG + chr7_2:56721175-56721194 None:intergenic 65.0%
GACCCGCCACACCCTCACTT+AGG - chr7_2:56723181-56723200 Msa1064210:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 56720532 56724131 56720532 ID=Msa1064210;Name=Msa1064210
chr7_2 mRNA 56720532 56724131 56720532 ID=Msa1064210-mRNA-1;Parent=Msa1064210;Name=Msa1064210-mRNA-1;_AED=0.05;_eAED=0.05;_QI=66|1|1|1|1|1|7|448|243
chr7_2 exon 56720532 56721056 56720532 ID=Msa1064210-mRNA-1:exon:10764;Parent=Msa1064210-mRNA-1
chr7_2 exon 56721160 56721253 56721160 ID=Msa1064210-mRNA-1:exon:10763;Parent=Msa1064210-mRNA-1
chr7_2 exon 56722201 56722301 56722201 ID=Msa1064210-mRNA-1:exon:10762;Parent=Msa1064210-mRNA-1
chr7_2 exon 56722438 56722537 56722438 ID=Msa1064210-mRNA-1:exon:10761;Parent=Msa1064210-mRNA-1
chr7_2 exon 56722984 56723167 56722984 ID=Msa1064210-mRNA-1:exon:10760;Parent=Msa1064210-mRNA-1
chr7_2 exon 56723806 56723866 56723806 ID=Msa1064210-mRNA-1:exon:10759;Parent=Msa1064210-mRNA-1
chr7_2 exon 56723951 56724131 56723951 ID=Msa1064210-mRNA-1:exon:10758;Parent=Msa1064210-mRNA-1
chr7_2 five_prime_UTR 56724066 56724131 56724066 ID=Msa1064210-mRNA-1:five_prime_utr;Parent=Msa1064210-mRNA-1
chr7_2 CDS 56723951 56724065 56723951 ID=Msa1064210-mRNA-1:cds;Parent=Msa1064210-mRNA-1
chr7_2 CDS 56723806 56723866 56723806 ID=Msa1064210-mRNA-1:cds;Parent=Msa1064210-mRNA-1
chr7_2 CDS 56722984 56723167 56722984 ID=Msa1064210-mRNA-1:cds;Parent=Msa1064210-mRNA-1
chr7_2 CDS 56722438 56722537 56722438 ID=Msa1064210-mRNA-1:cds;Parent=Msa1064210-mRNA-1
chr7_2 CDS 56722201 56722301 56722201 ID=Msa1064210-mRNA-1:cds;Parent=Msa1064210-mRNA-1
chr7_2 CDS 56721160 56721253 56721160 ID=Msa1064210-mRNA-1:cds;Parent=Msa1064210-mRNA-1
chr7_2 CDS 56720980 56721056 56720980 ID=Msa1064210-mRNA-1:cds;Parent=Msa1064210-mRNA-1
chr7_2 three_prime_UTR 56720532 56720979 56720532 ID=Msa1064210-mRNA-1:three_prime_utr;Parent=Msa1064210-mRNA-1
Gene Sequence

>Msa1064210

ATGCTAACCCTCAATCTCAATTCTCTTTCTTCTTCAACTCTTCCCTTTCATCCACTCTTTACTCAAACTCAGTTATTACTTCCTGCTAATCTTAATTACCCTTTTGCTAATACAGCTACCAGAAAGTTGAGGACTTTTCAGCTCAAGGCTGGATTTTGGGAGTCAATTAAATCTGGGTTGATGAAGAATAACACCACACAGGTCATCGATCCAGAGTTAACAGAAGAAGAAGACGAAGAACCTCTACCTCAAGAGTTTGTGCTTGTTGAAAAGACTGAACCTGATGGAACAATTGAGCAAATATTGTTCTCTTCAGGTGGAGATCTTGATGTTTATGATCTTCAAGCCCTCTGTGACAAGGTAGGGTGGCCTCGTAGGCCATTATCGAAATTAGCTGCTGCTTTGAAAAATAGCTATATGGTGGCCTCTCTGTATTCTATAAGAAAGTCACCAGGGTCAGAGGGGAATGAACAAAAGATATTAATTGGCATGGCCCGTGCTACATCAGACCATGCCTTCAATGCCACAATTTGGGATGTCCTAGTTGATCCAGGCTACCAGGGCCAAGGTCTTGGTAAAGCTCTTGTAGAGAAACTCATTCGAGCTCTTTTGCAAAGGGACATCGGTAATATTACTTTGTTCGCAGATAGTAAAGTCGTGGAATTTTATCGCAATTTAGGGTTTGAAGCTGACCCAGAGGGCATAAAAGGCATGTTCTGGTACCCAAATTGA

Protein sequence

>Msa1064210

MLTLNLNSLSSSTLPFHPLFTQTQLLLPANLNYPFANTATRKLRTFQLKAGFWESIKSGLMKNNTTQVIDPELTEEEDEEPLPQEFVLVEKTEPDGTIEQILFSSGGDLDVYDLQALCDKVGWPRRPLSKLAAALKNSYMVASLYSIRKSPGSEGNEQKILIGMARATSDHAFNATIWDVLVDPGYQGQGLGKALVEKLIRALLQRDIGNITLFADSKVVEFYRNLGFEADPEGIKGMFWYPN*