Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1042890 | XP_003616714.2 | 97.196 | 214 | 6 | 0 | 1 | 214 | 1 | 214 | 2.50e-143 | 408 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1042890 | sp|O80915|PR1B4_ARATH | 62.562 | 203 | 75 | 1 | 2 | 203 | 4 | 206 | 5.63e-95 | 279 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1042890 | G7K792 | 97.196 | 214 | 6 | 0 | 1 | 214 | 1 | 214 | 1.19e-143 | 408 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0012780 | Msa1042890 | 0.821653 | 3.600556e-53 | -8.615850e-47 |
Msa0020630 | Msa1042890 | -0.807073 | 6.039136e-50 | -8.615850e-47 |
Msa0029020 | Msa1042890 | 0.803935 | 2.748959e-49 | -8.615850e-47 |
Msa0038350 | Msa1042890 | 0.823082 | 1.677705e-53 | -8.615850e-47 |
Msa0040550 | Msa1042890 | 0.801020 | 1.096578e-48 | -8.615850e-47 |
Msa0046660 | Msa1042890 | 0.802764 | 4.805440e-49 | -8.615850e-47 |
Msa0054730 | Msa1042890 | 0.812083 | 5.068246e-51 | -8.615850e-47 |
Msa0062020 | Msa1042890 | 0.801803 | 7.578221e-49 | -8.615850e-47 |
Msa0106110 | Msa1042890 | 0.811622 | 6.385889e-51 | -8.615850e-47 |
Msa0106370 | Msa1042890 | 0.829483 | 5.018515e-55 | -8.615850e-47 |
Msa0624730 | Msa1042890 | -0.826288 | 2.945138e-54 | -8.615850e-47 |
Msa0626230 | Msa1042890 | -0.802462 | 5.547266e-49 | -8.615850e-47 |
Msa0647000 | Msa1042890 | -0.801987 | 6.948086e-49 | -8.615850e-47 |
Msa0651400 | Msa1042890 | -0.806844 | 6.753127e-50 | -8.615850e-47 |
Msa0657670 | Msa1042890 | -0.840080 | 1.078128e-57 | -8.615850e-47 |
Msa0664020 | Msa1042890 | -0.811688 | 6.177124e-51 | -8.615850e-47 |
Msa0668090 | Msa1042890 | -0.811786 | 5.882618e-51 | -8.615850e-47 |
Msa0674220 | Msa1042890 | -0.817777 | 2.765852e-52 | -8.615850e-47 |
Msa0697540 | Msa1042890 | -0.805463 | 1.318852e-49 | -8.615850e-47 |
Msa0704470 | Msa1042890 | 0.807753 | 4.333820e-50 | -8.615850e-47 |
Msa0714560 | Msa1042890 | 0.800226 | 1.591647e-48 | -8.615850e-47 |
Msa0714600 | Msa1042890 | -0.814299 | 1.653213e-51 | -8.615850e-47 |
Msa0715310 | Msa1042890 | -0.813731 | 2.206379e-51 | -8.615850e-47 |
Msa0722930 | Msa1042890 | -0.845520 | 3.858513e-59 | -8.615850e-47 |
Msa0723140 | Msa1042890 | -0.846227 | 2.480107e-59 | -8.615850e-47 |
Msa0725480 | Msa1042890 | 0.861996 | 6.924930e-64 | -8.615850e-47 |
Msa0748610 | Msa1042890 | -0.805171 | 1.518669e-49 | -8.615850e-47 |
Msa0766100 | Msa1042890 | 0.872830 | 2.351938e-67 | -8.615850e-47 |
Msa0774900 | Msa1042890 | 0.807870 | 4.092341e-50 | -8.615850e-47 |
Msa0792510 | Msa1042890 | -0.813922 | 2.002876e-51 | -8.615850e-47 |
Msa0813320 | Msa1042890 | 0.810609 | 1.058585e-50 | -8.615850e-47 |
Msa0828570 | Msa1042890 | -0.828177 | 1.039034e-54 | -8.615850e-47 |
Msa0836680 | Msa1042890 | -0.815705 | 8.062158e-52 | -8.615850e-47 |
Msa0837990 | Msa1042890 | -0.814060 | 1.867482e-51 | -8.615850e-47 |
Msa0145670 | Msa1042890 | -0.800040 | 1.736504e-48 | -8.615850e-47 |
Msa0159750 | Msa1042890 | -0.804819 | 1.798399e-49 | -8.615850e-47 |
Msa0164360 | Msa1042890 | -0.822673 | 2.088228e-53 | -8.615850e-47 |
Msa0170580 | Msa1042890 | -0.817637 | 2.974087e-52 | -8.615850e-47 |
Msa0181410 | Msa1042890 | -0.809959 | 1.461863e-50 | -8.615850e-47 |
Msa0183380 | Msa1042890 | -0.806207 | 9.199908e-50 | -8.615850e-47 |
Msa0185640 | Msa1042890 | 0.831999 | 1.214224e-55 | -8.615850e-47 |
Msa0196130 | Msa1042890 | 0.800397 | 1.468854e-48 | -8.615850e-47 |
Msa0208390 | Msa1042890 | -0.804662 | 1.939534e-49 | -8.615850e-47 |
Msa0238070 | Msa1042890 | 0.802329 | 5.906379e-49 | -8.615850e-47 |
Msa0418000 | Msa1042890 | -0.804675 | 1.927453e-49 | -8.615850e-47 |
Msa0423090 | Msa1042890 | -0.817978 | 2.490705e-52 | -8.615850e-47 |
Msa0459770 | Msa1042890 | 0.808103 | 3.650820e-50 | -8.615850e-47 |
Msa0462590 | Msa1042890 | -0.803564 | 3.282866e-49 | -8.615850e-47 |
Msa0981740 | Msa1042890 | -0.801259 | 9.795183e-49 | -8.615850e-47 |
Msa1008490 | Msa1042890 | -0.803989 | 2.678302e-49 | -8.615850e-47 |
Msa1016670 | Msa1042890 | -0.800385 | 1.477447e-48 | -8.615850e-47 |
Msa1018020 | Msa1042890 | 0.847138 | 1.397384e-59 | -8.615850e-47 |
Msa1036390 | Msa1042890 | -0.820105 | 8.176167e-53 | -8.615850e-47 |
Msa1038050 | Msa1042890 | -0.805671 | 1.192867e-49 | -8.615850e-47 |
Msa1042890 | Msa1076680 | -0.815138 | 1.077674e-51 | -8.615850e-47 |
Msa1042890 | Msa1080460 | -0.806486 | 8.035331e-50 | -8.615850e-47 |
Msa1042890 | Msa1098560 | -0.802373 | 5.784434e-49 | -8.615850e-47 |
Msa1042890 | Msa1102540 | -0.813715 | 2.224605e-51 | -8.615850e-47 |
Msa1042890 | Msa1112000 | -0.820122 | 8.104527e-53 | -8.615850e-47 |
Msa1042890 | Msa1118140 | -0.806427 | 8.269049e-50 | -8.615850e-47 |
Msa1042890 | Msa1128160 | -0.804623 | 1.976570e-49 | -8.615850e-47 |
Msa1042890 | Msa1142280 | -0.812545 | 4.017843e-51 | -8.615850e-47 |
Msa1042890 | Msa1147980 | 0.834509 | 2.877292e-56 | -8.615850e-47 |
Msa1042890 | Msa1165360 | -0.804186 | 2.437750e-49 | -8.615850e-47 |
Msa1042890 | Msa1204980 | 0.825548 | 4.415556e-54 | -8.615850e-47 |
Msa1042890 | Msa1205010 | 0.820833 | 5.564512e-53 | -8.615850e-47 |
Msa1042890 | Msa1221200 | 0.872331 | 3.451573e-67 | -8.615850e-47 |
Msa1042890 | Msa1223460 | -0.816817 | 4.547370e-52 | -8.615850e-47 |
Msa1042890 | Msa1254770 | -0.808890 | 2.479181e-50 | -8.615850e-47 |
Msa1042890 | Msa1254800 | -0.810049 | 1.398148e-50 | -8.615850e-47 |
Msa1042890 | Msa1256540 | 0.829245 | 5.732949e-55 | -8.615850e-47 |
Msa1042890 | Msa1265820 | 0.829652 | 4.566033e-55 | -8.615850e-47 |
Msa1042890 | Msa1265960 | -0.813472 | 2.516316e-51 | -8.615850e-47 |
Msa1042890 | Msa1271280 | -0.804472 | 2.125017e-49 | -8.615850e-47 |
Msa1042890 | Msa1288320 | 0.800290 | 1.544455e-48 | -8.615850e-47 |
Msa1042890 | Msa1296960 | 0.831266 | 1.840581e-55 | -8.615850e-47 |
Msa1042890 | Msa1329990 | -0.816491 | 5.381250e-52 | -8.615850e-47 |
Msa1042890 | Msa1332110 | 0.821447 | 4.018725e-53 | -8.615850e-47 |
Msa1042890 | Msa1332140 | 0.849620 | 2.877677e-60 | -8.615850e-47 |
Msa1042890 | Msa1335970 | 0.841506 | 4.559320e-58 | -8.615850e-47 |
Msa1042890 | Msa1347290 | -0.818704 | 1.706096e-52 | -8.615850e-47 |
Msa1042890 | Msa1347620 | -0.813743 | 2.193189e-51 | -8.615850e-47 |
Msa1042890 | Msa1358870 | 0.849685 | 2.759051e-60 | -8.615850e-47 |
Msa1042890 | Msa1367620 | 0.807619 | 4.626255e-50 | -8.615850e-47 |
Msa1042890 | Msa1371080 | 0.802384 | 5.756618e-49 | -8.615850e-47 |
Msa1042890 | Msa1373950 | -0.810524 | 1.104339e-50 | -8.615850e-47 |
Msa1042890 | Msa1395230 | 0.810508 | 1.112999e-50 | -8.615850e-47 |
Msa1042890 | Msa1411070 | -0.800110 | 1.680445e-48 | -8.615850e-47 |
Msa1042890 | Msa1428420 | -0.802792 | 4.742489e-49 | -8.615850e-47 |
Msa1042890 | Msa1431000 | -0.804103 | 2.536784e-49 | -8.615850e-47 |
Msa1042890 | Msa1438270 | -0.823600 | 1.269055e-53 | -8.615850e-47 |
Msa1042890 | Msa1447560 | -0.815219 | 1.034254e-51 | -8.615850e-47 |
Msa1042890 | Msa1454910 | 0.801129 | 1.041632e-48 | -8.615850e-47 |
Msa1042890 | Msa1456810 | -0.826487 | 2.640604e-54 | -8.615850e-47 |
Msa1042890 | Msa1457670 | 0.802876 | 4.556021e-49 | -8.615850e-47 |
Msa1042890 | Msa1460310 | 0.815059 | 1.122404e-51 | -8.615850e-47 |
Msa1042890 | Msa1464560 | -0.801745 | 7.787248e-49 | -8.615850e-47 |
Msa0240780 | Msa1042890 | -0.801504 | 8.725930e-49 | -8.615850e-47 |
Msa0258670 | Msa1042890 | 0.818966 | 1.487721e-52 | -8.615850e-47 |
Msa0264940 | Msa1042890 | 0.811556 | 6.598698e-51 | -8.615850e-47 |
Msa0269360 | Msa1042890 | -0.802489 | 5.475782e-49 | -8.615850e-47 |
Msa0298940 | Msa1042890 | -0.817944 | 2.534821e-52 | -8.615850e-47 |
Msa0302990 | Msa1042890 | 0.814234 | 1.709254e-51 | -8.615850e-47 |
Msa0325470 | Msa1042890 | -0.804360 | 2.242774e-49 | -8.615850e-47 |
Msa0342340 | Msa1042890 | 0.824903 | 6.272735e-54 | -8.615850e-47 |
Msa0356550 | Msa1042890 | 0.812391 | 4.340297e-51 | -8.615850e-47 |
Msa0497770 | Msa1042890 | 0.813053 | 3.110307e-51 | -8.615850e-47 |
Msa0531970 | Msa1042890 | 0.825918 | 3.607028e-54 | -8.615850e-47 |
Msa0540070 | Msa1042890 | -0.801954 | 7.055459e-49 | -8.615850e-47 |
Msa0540320 | Msa1042890 | -0.814354 | 1.608313e-51 | -8.615850e-47 |
Msa0582110 | Msa1042890 | -0.830321 | 3.136758e-55 | -8.615850e-47 |
Msa0596100 | Msa1042890 | -0.820255 | 7.553458e-53 | -8.615850e-47 |
Msa0843280 | Msa1042890 | -0.817884 | 2.616449e-52 | -8.615850e-47 |
Msa0845590 | Msa1042890 | 0.825546 | 4.418591e-54 | -8.615850e-47 |
Msa0865990 | Msa1042890 | 0.847143 | 1.392947e-59 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1042890 | MtrunA17_Chr5g0437751 | 97.196 | 214 | 6 | 0 | 1 | 214 | 1 | 214 | 2.30e-147 | 408 |
Msa1042890 | MtrunA17_Chr4g0005191 | 61.290 | 186 | 71 | 1 | 27 | 211 | 35 | 220 | 1.31e-80 | 240 |
Msa1042890 | MtrunA17_Chr7g0260751 | 43.182 | 176 | 96 | 3 | 36 | 210 | 24 | 196 | 2.63e-40 | 136 |
Msa1042890 | MtrunA17_Chr3g0106401 | 45.349 | 172 | 89 | 1 | 20 | 191 | 2 | 168 | 1.05e-32 | 117 |
Msa1042890 | MtrunA17_Chr1g0184741 | 40.764 | 157 | 91 | 1 | 48 | 204 | 28 | 182 | 1.08e-28 | 106 |
Msa1042890 | MtrunA17_Chr2g0330441 | 34.146 | 164 | 98 | 4 | 37 | 194 | 22 | 181 | 1.47e-28 | 105 |
Msa1042890 | MtrunA17_Chr8g0341921 | 37.725 | 167 | 102 | 1 | 19 | 185 | 2 | 166 | 2.38e-24 | 94.7 |
Msa1042890 | MtrunA17_Chr2g0330451 | 38.068 | 176 | 104 | 2 | 19 | 194 | 6 | 176 | 6.29e-24 | 94.0 |
Msa1042890 | MtrunA17_Chr6g0488551 | 28.962 | 183 | 122 | 2 | 11 | 193 | 2 | 176 | 1.58e-23 | 93.2 |
Msa1042890 | MtrunA17_Chr1g0190601 | 42.949 | 156 | 83 | 2 | 52 | 207 | 35 | 184 | 1.99e-23 | 92.8 |
Msa1042890 | MtrunA17_Chr1g0187861 | 36.538 | 156 | 98 | 1 | 37 | 191 | 8 | 163 | 3.63e-18 | 78.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1042890 | AT2G38360.1 | 62.562 | 203 | 75 | 1 | 2 | 203 | 4 | 206 | 5.72e-96 | 279 |
Msa1042890 | AT5G05380.4 | 67.164 | 201 | 61 | 1 | 1 | 201 | 45 | 240 | 9.93e-87 | 257 |
Msa1042890 | AT5G05380.3 | 67.164 | 201 | 61 | 1 | 1 | 201 | 53 | 248 | 1.04e-86 | 257 |
Msa1042890 | AT5G05380.1 | 67.164 | 201 | 61 | 1 | 1 | 201 | 2 | 197 | 1.06e-86 | 255 |
Msa1042890 | AT3G56110.3 | 65.174 | 201 | 63 | 1 | 1 | 201 | 1 | 194 | 1.86e-86 | 254 |
Msa1042890 | AT3G56110.1 | 65.174 | 201 | 63 | 1 | 1 | 201 | 1 | 194 | 1.86e-86 | 254 |
Msa1042890 | AT3G56110.2 | 65.174 | 201 | 63 | 1 | 1 | 201 | 1 | 194 | 1.86e-86 | 254 |
Msa1042890 | AT3G56110.4 | 65.174 | 201 | 63 | 1 | 1 | 201 | 1 | 194 | 1.86e-86 | 254 |
Msa1042890 | AT5G05380.2 | 67.164 | 201 | 61 | 1 | 1 | 201 | 69 | 264 | 2.36e-86 | 257 |
Msa1042890 | AT5G01640.1 | 52.427 | 206 | 89 | 2 | 2 | 202 | 4 | 205 | 1.09e-77 | 233 |
Msa1042890 | AT2G40380.1 | 63.366 | 202 | 68 | 1 | 2 | 203 | 3 | 198 | 1.68e-74 | 224 |
Msa1042890 | AT5G07110.1 | 55.738 | 183 | 77 | 1 | 19 | 197 | 8 | 190 | 2.30e-59 | 186 |
Msa1042890 | AT1G55190.1 | 37.705 | 183 | 105 | 4 | 22 | 200 | 9 | 186 | 1.65e-32 | 116 |
Msa1042890 | AT4G00005.1 | 57.000 | 100 | 43 | 0 | 74 | 173 | 2 | 101 | 5.91e-32 | 112 |
Msa1042890 | AT3G13710.1 | 34.659 | 176 | 109 | 2 | 19 | 194 | 8 | 177 | 1.03e-28 | 106 |
Msa1042890 | AT1G08770.1 | 33.333 | 162 | 108 | 0 | 38 | 199 | 34 | 195 | 2.88e-26 | 100 |
Msa1042890 | AT1G17700.1 | 36.994 | 173 | 107 | 1 | 21 | 193 | 6 | 176 | 1.55e-24 | 95.9 |
Msa1042890 | AT3G13720.1 | 35.443 | 158 | 100 | 1 | 37 | 194 | 22 | 177 | 9.93e-24 | 94.0 |
Msa1042890 | AT5G56230.1 | 32.418 | 182 | 116 | 3 | 22 | 198 | 2 | 181 | 1.92e-22 | 90.5 |
Msa1042890 | AT1G04260.1 | 31.548 | 168 | 113 | 1 | 37 | 204 | 6 | 171 | 5.09e-22 | 89.4 |
Msa1042890 | AT1G55640.1 | 31.210 | 157 | 105 | 2 | 37 | 192 | 23 | 177 | 1.64e-18 | 80.1 |
Msa1042890 | AT4G29658.2 | 30.625 | 160 | 106 | 2 | 35 | 191 | 18 | 175 | 2.78e-16 | 74.3 |
Find 81 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTGGTGCTGGTGTTGGATA+TGG | 0.240654 | 7_2:+586222 | None:intergenic |
TATGCTTCGGCAAGAGTTTC+GGG | 0.244120 | 7_2:+586070 | None:intergenic |
TGGCGATCGGTGGTTGAGAT+TGG | 0.282317 | 7_2:+586200 | None:intergenic |
CTGCGAGAGCGAAGATGATT+AGG | 0.284772 | 7_2:+585999 | None:intergenic |
ATGTGAAATTCTTGCGGATT+CGG | 0.315878 | 7_2:+586044 | None:intergenic |
GTATGCTTCGGCAAGAGTTT+CGG | 0.325212 | 7_2:+586069 | None:intergenic |
TGGTCCTTGTTCGTTCTTCT+CGG | 0.331951 | 7_2:-585956 | Msa1042890:CDS |
GTGGATTGGGAAGTGGAAAC+GGG | 0.332376 | 7_2:+586244 | None:intergenic |
AGGACCATGGATGTGTGATT+AGG | 0.355218 | 7_2:+585972 | None:intergenic |
TGTGAAATTCTTGCGGATTC+GGG | 0.360685 | 7_2:+586045 | None:intergenic |
GAGATGAATGCGCGGAAAGC+GGG | 0.362977 | 7_2:+586175 | None:intergenic |
GGTGTTGGATATGGTGGATT+GGG | 0.368044 | 7_2:+586231 | None:intergenic |
GGACCATGGATGTGTGATTA+GGG | 0.378240 | 7_2:+585973 | None:intergenic |
ATCATCAAGAAACAAATCTT+CGG | 0.379952 | 7_2:+585721 | None:intergenic |
GTTGTTGATCTCTGCGCTTA+TGG | 0.381739 | 7_2:-585786 | Msa1042890:CDS |
AGATTTGTTTCTTGATGATC+AGG | 0.389550 | 7_2:-585717 | Msa1042890:CDS |
GGCGATCGGTGGTTGAGATT+GGG | 0.393998 | 7_2:+586201 | None:intergenic |
GGTGGATTGGGAAGTGGAAA+CGG | 0.394090 | 7_2:+586243 | None:intergenic |
TTCGGACCAGGGACGGCGTT+GGG | 0.405527 | 7_2:+586120 | None:intergenic |
CCTTCTCCCAACGCCGTCCC+TGG | 0.410509 | 7_2:-586126 | Msa1042890:CDS |
ACGGGATTCTTATCGTTTCT+CGG | 0.415596 | 7_2:-585683 | Msa1042890:CDS |
TGGTGTTGGATATGGTGGAT+TGG | 0.416693 | 7_2:+586230 | None:intergenic |
GGTGCTGGTGTTGGATATGG+TGG | 0.417359 | 7_2:+586225 | None:intergenic |
TGAGGAACGGTCGATGAGTT+CGG | 0.422158 | 7_2:+586102 | None:intergenic |
AGATTGGGTGGTGCTGGTGT+TGG | 0.426571 | 7_2:+586216 | None:intergenic |
TTCTCGGTCTTCTTGCTTCG+TGG | 0.433749 | 7_2:-585940 | Msa1042890:CDS |
TCATCAAGAAACAAATCTTC+GGG | 0.436107 | 7_2:+585722 | None:intergenic |
TTGATCTCTGCGCTTATGGT+TGG | 0.438891 | 7_2:-585782 | Msa1042890:CDS |
CTCTGCGCTTATGGTTGGAT+TGG | 0.443122 | 7_2:-585777 | Msa1042890:CDS |
TGGTTGAGATTGGGTGGTGC+TGG | 0.448544 | 7_2:+586210 | None:intergenic |
GATCAACCTCTCGTTCTCTT+CGG | 0.458353 | 7_2:-585890 | Msa1042890:CDS |
GTTGTGTTTCTTACTGCCGT+TGG | 0.462273 | 7_2:-585812 | Msa1042890:CDS |
CCAGGGACGGCGTTGGGAGA+AGG | 0.465648 | 7_2:+586126 | None:intergenic |
GAAGGCTTGACGGAGGGAGG+AGG | 0.474425 | 7_2:+586144 | None:intergenic |
TGCGAGAGCGAAGATGATTA+GGG | 0.477760 | 7_2:+586000 | None:intergenic |
GAGCGAAGATGATTAGGGTT+AGG | 0.478271 | 7_2:+586005 | None:intergenic |
GACGGAGGGAGGAGGAGATG+CGG | 0.481200 | 7_2:+586152 | None:intergenic |
ACGGAGGGAGGAGGAGATGC+GGG | 0.483044 | 7_2:+586153 | None:intergenic |
GCGGATTCGGGAGTATGCTT+CGG | 0.487170 | 7_2:+586057 | None:intergenic |
GAGTGTCGGTGGAGAGGACA+TGG | 0.489018 | 7_2:+586267 | None:intergenic |
GGCGTTGGGAGAAGGCTTGA+CGG | 0.493276 | 7_2:+586134 | None:intergenic |
ACGGTCGATGAGTTCGGACC+AGG | 0.497627 | 7_2:+586108 | None:intergenic |
AGTTTCGGGACGGGAGATTG+AGG | 0.502283 | 7_2:+586084 | None:intergenic |
GGATATGGTGGATTGGGAAG+TGG | 0.503254 | 7_2:+586237 | None:intergenic |
GATCAGGAGGTGAGTAGTAC+GGG | 0.507080 | 7_2:-585701 | Msa1042890:CDS |
TTGGCGATTGTGTGTGCGCA+TGG | 0.516927 | 7_2:-585758 | Msa1042890:CDS |
GAAGAGAACGAGAGGTTGAT+CGG | 0.520068 | 7_2:+585892 | None:intergenic |
TGATCAGGAGGTGAGTAGTA+CGG | 0.525246 | 7_2:-585702 | Msa1042890:CDS |
TTCGGCAAGAGTTTCGGGAC+GGG | 0.525477 | 7_2:+586075 | None:intergenic |
AACGGGGAGTGTCGGTGGAG+AGG | 0.530414 | 7_2:+586261 | None:intergenic |
TTGAATCGCGGCGTTAGCAG+CGG | 0.532993 | 7_2:+585652 | None:intergenic |
GTGGAAACGGGGAGTGTCGG+TGG | 0.534371 | 7_2:+586256 | None:intergenic |
TTTGCAGATCGTGAAACGCT+AGG | 0.550246 | 7_2:-585860 | Msa1042890:CDS |
TTGCAGATCGTGAAACGCTA+GGG | 0.553499 | 7_2:-585859 | Msa1042890:CDS |
GTTGATCGGAAGGACGGAAG+AGG | 0.556915 | 7_2:+585906 | None:intergenic |
GGAGATGAATGCGCGGAAAG+CGG | 0.557009 | 7_2:+586174 | None:intergenic |
AGATGAATGCGCGGAAAGCG+GGG | 0.561715 | 7_2:+586176 | None:intergenic |
TTGGGAGAAGGCTTGACGGA+GGG | 0.564649 | 7_2:+586138 | None:intergenic |
GATCGGTGGTTGAGATTGGG+TGG | 0.577090 | 7_2:+586204 | None:intergenic |
CGATGAGTTCGGACCAGGGA+CGG | 0.577381 | 7_2:+586113 | None:intergenic |
GAAGTGGAAACGGGGAGTGT+CGG | 0.578014 | 7_2:+586253 | None:intergenic |
GGAGAAGGCTTGACGGAGGG+AGG | 0.578616 | 7_2:+586141 | None:intergenic |
AAGACCGAGAAGAACGAACA+AGG | 0.583542 | 7_2:+585952 | None:intergenic |
AGAACGAGAGGTTGATCGGA+AGG | 0.584166 | 7_2:+585896 | None:intergenic |
GATGAATGCGCGGAAAGCGG+GGG | 0.585413 | 7_2:+586177 | None:intergenic |
CGAGAGGTTGATCGGAAGGA+CGG | 0.591390 | 7_2:+585900 | None:intergenic |
GAAAGTATGTGAAATTCTTG+CGG | 0.592085 | 7_2:+586038 | None:intergenic |
TTTGTTTCTTGATGATCAGG+AGG | 0.597146 | 7_2:-585714 | Msa1042890:CDS |
TGGATTGGGAAGTGGAAACG+GGG | 0.599442 | 7_2:+586245 | None:intergenic |
CAATTACACGCGTTGAATCG+CGG | 0.599667 | 7_2:+585640 | None:intergenic |
CTTCGGCAAGAGTTTCGGGA+CGG | 0.630250 | 7_2:+586074 | None:intergenic |
TTTCCCTAATCACACATCCA+TGG | 0.630889 | 7_2:-585976 | Msa1042890:CDS |
AGAAGAACGAACAAGGACCA+TGG | 0.638113 | 7_2:+585959 | None:intergenic |
GTTGGGAGAAGGCTTGACGG+AGG | 0.642320 | 7_2:+586137 | None:intergenic |
GTGCGTCCGAAGAGAACGAG+AGG | 0.644143 | 7_2:+585884 | None:intergenic |
CGGTCGATGAGTTCGGACCA+GGG | 0.648946 | 7_2:+586109 | None:intergenic |
TGAAACGCTAGGGCTTCTTG+TGG | 0.652168 | 7_2:-585849 | Msa1042890:CDS |
AGAGATCAACAACGATCCAA+CGG | 0.666421 | 7_2:+585796 | None:intergenic |
AGATGCGGGAGATGAATGCG+CGG | 0.678556 | 7_2:+586167 | None:intergenic |
GGATTCTTATCGTTTCTCGG+TGG | 0.698100 | 7_2:-585680 | Msa1042890:CDS |
CGGGACGGGAGATTGAGGAA+CGG | 0.722451 | 7_2:+586089 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | ATCATCAAGAAACAAATCTT+CGG | + | chr7_2:586190-586209 | None:intergenic | 25.0% |
! | GAAAGTATGTGAAATTCTTG+CGG | + | chr7_2:585873-585892 | None:intergenic | 30.0% |
TCATCAAGAAACAAATCTTC+GGG | + | chr7_2:586189-586208 | None:intergenic | 30.0% | |
! | AGATTTGTTTCTTGATGATC+AGG | - | chr7_2:586191-586210 | Msa1042890:CDS | 30.0% |
ATGTGAAATTCTTGCGGATT+CGG | + | chr7_2:585867-585886 | None:intergenic | 35.0% | |
! | TTTGTTTCTTGATGATCAGG+AGG | - | chr7_2:586194-586213 | Msa1042890:CDS | 35.0% |
TGTGAAATTCTTGCGGATTC+GGG | + | chr7_2:585866-585885 | None:intergenic | 40.0% | |
TTTCCCTAATCACACATCCA+TGG | - | chr7_2:585932-585951 | Msa1042890:CDS | 40.0% | |
AGAGATCAACAACGATCCAA+CGG | + | chr7_2:586115-586134 | None:intergenic | 40.0% | |
ACGGGATTCTTATCGTTTCT+CGG | - | chr7_2:586225-586244 | Msa1042890:CDS | 40.0% | |
!! | GGTGTTGGATATGGTGGATT+GGG | + | chr7_2:585680-585699 | None:intergenic | 45.0% |
!! | TGGTGTTGGATATGGTGGAT+TGG | + | chr7_2:585681-585700 | None:intergenic | 45.0% |
TATGCTTCGGCAAGAGTTTC+GGG | + | chr7_2:585841-585860 | None:intergenic | 45.0% | |
GTATGCTTCGGCAAGAGTTT+CGG | + | chr7_2:585842-585861 | None:intergenic | 45.0% | |
GAGCGAAGATGATTAGGGTT+AGG | + | chr7_2:585906-585925 | None:intergenic | 45.0% | |
TGCGAGAGCGAAGATGATTA+GGG | + | chr7_2:585911-585930 | None:intergenic | 45.0% | |
GGACCATGGATGTGTGATTA+GGG | + | chr7_2:585938-585957 | None:intergenic | 45.0% | |
AGGACCATGGATGTGTGATT+AGG | + | chr7_2:585939-585958 | None:intergenic | 45.0% | |
AGAAGAACGAACAAGGACCA+TGG | + | chr7_2:585952-585971 | None:intergenic | 45.0% | |
TGGTCCTTGTTCGTTCTTCT+CGG | - | chr7_2:585952-585971 | Msa1042890:CDS | 45.0% | |
AAGACCGAGAAGAACGAACA+AGG | + | chr7_2:585959-585978 | None:intergenic | 45.0% | |
! | GAAGAGAACGAGAGGTTGAT+CGG | + | chr7_2:586019-586038 | None:intergenic | 45.0% |
GATCAACCTCTCGTTCTCTT+CGG | - | chr7_2:586018-586037 | Msa1042890:CDS | 45.0% | |
TTTGCAGATCGTGAAACGCT+AGG | - | chr7_2:586048-586067 | Msa1042890:CDS | 45.0% | |
TTGCAGATCGTGAAACGCTA+GGG | - | chr7_2:586049-586068 | Msa1042890:CDS | 45.0% | |
GTTGTGTTTCTTACTGCCGT+TGG | - | chr7_2:586096-586115 | Msa1042890:CDS | 45.0% | |
GTTGTTGATCTCTGCGCTTA+TGG | - | chr7_2:586122-586141 | Msa1042890:CDS | 45.0% | |
TTGATCTCTGCGCTTATGGT+TGG | - | chr7_2:586126-586145 | Msa1042890:CDS | 45.0% | |
TGATCAGGAGGTGAGTAGTA+CGG | - | chr7_2:586206-586225 | Msa1042890:CDS | 45.0% | |
GGATTCTTATCGTTTCTCGG+TGG | - | chr7_2:586228-586247 | Msa1042890:CDS | 45.0% | |
! | TGGATTGGGAAGTGGAAACG+GGG | + | chr7_2:585666-585685 | None:intergenic | 50.0% |
!! | GTGGATTGGGAAGTGGAAAC+GGG | + | chr7_2:585667-585686 | None:intergenic | 50.0% |
!! | GGTGGATTGGGAAGTGGAAA+CGG | + | chr7_2:585668-585687 | None:intergenic | 50.0% |
!! | GGATATGGTGGATTGGGAAG+TGG | + | chr7_2:585674-585693 | None:intergenic | 50.0% |
TGAGGAACGGTCGATGAGTT+CGG | + | chr7_2:585809-585828 | None:intergenic | 50.0% | |
CTGCGAGAGCGAAGATGATT+AGG | + | chr7_2:585912-585931 | None:intergenic | 50.0% | |
TTCTCGGTCTTCTTGCTTCG+TGG | - | chr7_2:585968-585987 | Msa1042890:CDS | 50.0% | |
! | AGAACGAGAGGTTGATCGGA+AGG | + | chr7_2:586015-586034 | None:intergenic | 50.0% |
TGAAACGCTAGGGCTTCTTG+TGG | - | chr7_2:586059-586078 | Msa1042890:CDS | 50.0% | |
CTCTGCGCTTATGGTTGGAT+TGG | - | chr7_2:586131-586150 | Msa1042890:CDS | 50.0% | |
GATCAGGAGGTGAGTAGTAC+GGG | - | chr7_2:586207-586226 | Msa1042890:CDS | 50.0% | |
! | GAAGTGGAAACGGGGAGTGT+CGG | + | chr7_2:585658-585677 | None:intergenic | 55.0% |
!! | GGTGCTGGTGTTGGATATGG+TGG | + | chr7_2:585686-585705 | None:intergenic | 55.0% |
!! | GGTGGTGCTGGTGTTGGATA+TGG | + | chr7_2:585689-585708 | None:intergenic | 55.0% |
!! | AGATTGGGTGGTGCTGGTGT+TGG | + | chr7_2:585695-585714 | None:intergenic | 55.0% |
TGGTTGAGATTGGGTGGTGC+TGG | + | chr7_2:585701-585720 | None:intergenic | 55.0% | |
GATCGGTGGTTGAGATTGGG+TGG | + | chr7_2:585707-585726 | None:intergenic | 55.0% | |
GGCGATCGGTGGTTGAGATT+GGG | + | chr7_2:585710-585729 | None:intergenic | 55.0% | |
TGGCGATCGGTGGTTGAGAT+TGG | + | chr7_2:585711-585730 | None:intergenic | 55.0% | |
AGATGAATGCGCGGAAAGCG+GGG | + | chr7_2:585735-585754 | None:intergenic | 55.0% | |
GAGATGAATGCGCGGAAAGC+GGG | + | chr7_2:585736-585755 | None:intergenic | 55.0% | |
GGAGATGAATGCGCGGAAAG+CGG | + | chr7_2:585737-585756 | None:intergenic | 55.0% | |
AGATGCGGGAGATGAATGCG+CGG | + | chr7_2:585744-585763 | None:intergenic | 55.0% | |
TTGGGAGAAGGCTTGACGGA+GGG | + | chr7_2:585773-585792 | None:intergenic | 55.0% | |
AGTTTCGGGACGGGAGATTG+AGG | + | chr7_2:585827-585846 | None:intergenic | 55.0% | |
TTCGGCAAGAGTTTCGGGAC+GGG | + | chr7_2:585836-585855 | None:intergenic | 55.0% | |
CTTCGGCAAGAGTTTCGGGA+CGG | + | chr7_2:585837-585856 | None:intergenic | 55.0% | |
! | GCGGATTCGGGAGTATGCTT+CGG | + | chr7_2:585854-585873 | None:intergenic | 55.0% |
GTTGATCGGAAGGACGGAAG+AGG | + | chr7_2:586005-586024 | None:intergenic | 55.0% | |
! | CGAGAGGTTGATCGGAAGGA+CGG | + | chr7_2:586011-586030 | None:intergenic | 55.0% |
TTGGCGATTGTGTGTGCGCA+TGG | - | chr7_2:586150-586169 | Msa1042890:CDS | 55.0% | |
TTGAATCGCGGCGTTAGCAG+CGG | + | chr7_2:586259-586278 | None:intergenic | 55.0% | |
GATGAATGCGCGGAAAGCGG+GGG | + | chr7_2:585734-585753 | None:intergenic | 60.0% | |
GTTGGGAGAAGGCTTGACGG+AGG | + | chr7_2:585774-585793 | None:intergenic | 60.0% | |
! | GGCGTTGGGAGAAGGCTTGA+CGG | + | chr7_2:585777-585796 | None:intergenic | 60.0% |
CGATGAGTTCGGACCAGGGA+CGG | + | chr7_2:585798-585817 | None:intergenic | 60.0% | |
CGGTCGATGAGTTCGGACCA+GGG | + | chr7_2:585802-585821 | None:intergenic | 60.0% | |
ACGGTCGATGAGTTCGGACC+AGG | + | chr7_2:585803-585822 | None:intergenic | 60.0% | |
CGGGACGGGAGATTGAGGAA+CGG | + | chr7_2:585822-585841 | None:intergenic | 60.0% | |
GTGCGTCCGAAGAGAACGAG+AGG | + | chr7_2:586027-586046 | None:intergenic | 60.0% | |
!! | AACGGGGAGTGTCGGTGGAG+AGG | + | chr7_2:585650-585669 | None:intergenic | 65.0% |
!! | GTGGAAACGGGGAGTGTCGG+TGG | + | chr7_2:585655-585674 | None:intergenic | 65.0% |
ACGGAGGGAGGAGGAGATGC+GGG | + | chr7_2:585758-585777 | None:intergenic | 65.0% | |
GACGGAGGGAGGAGGAGATG+CGG | + | chr7_2:585759-585778 | None:intergenic | 65.0% | |
GAAGGCTTGACGGAGGGAGG+AGG | + | chr7_2:585767-585786 | None:intergenic | 65.0% | |
GGAGAAGGCTTGACGGAGGG+AGG | + | chr7_2:585770-585789 | None:intergenic | 65.0% | |
TTCGGACCAGGGACGGCGTT+GGG | + | chr7_2:585791-585810 | None:intergenic | 65.0% | |
AAAGCGGGGGTGGCGATCGG+TGG | + | chr7_2:585721-585740 | None:intergenic | 70.0% | |
CGGAAAGCGGGGGTGGCGAT+CGG | + | chr7_2:585724-585743 | None:intergenic | 70.0% | |
GAATGCGCGGAAAGCGGGGG+TGG | + | chr7_2:585731-585750 | None:intergenic | 70.0% | |
! | CCAGGGACGGCGTTGGGAGA+AGG | + | chr7_2:585785-585804 | None:intergenic | 70.0% |
CCTTCTCCCAACGCCGTCCC+TGG | - | chr7_2:585782-585801 | Msa1042890:CDS | 70.0% | |
GTTCGGACCAGGGACGGCGT+TGG | + | chr7_2:585792-585811 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_2 | gene | 585643 | 586287 | 585643 | ID=Msa1042890;Name=Msa1042890 |
chr7_2 | mRNA | 585643 | 586287 | 585643 | ID=Msa1042890-mRNA-1;Parent=Msa1042890;Name=Msa1042890-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|214 |
chr7_2 | exon | 585643 | 586287 | 585643 | ID=Msa1042890-mRNA-1:exon:20;Parent=Msa1042890-mRNA-1 |
chr7_2 | CDS | 585643 | 586287 | 585643 | ID=Msa1042890-mRNA-1:cds;Parent=Msa1042890-mRNA-1 |
Gene Sequence |
Protein sequence |