AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0989490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0989490 MtrunA17_Chr8g0390701 97.674 688 16 0 1 688 1 688 0.0 1373
Msa0989490 MtrunA17_Chr6g0485101 57.085 741 222 19 1 688 1 698 0.0 757
Msa0989490 MtrunA17_Chr6g0460621 50.233 215 96 5 16 222 15 226 2.01e-62 220
Msa0989490 MtrunA17_Chr1g0148531 27.168 346 154 9 66 350 1 309 2.86e-24 106
Msa0989490 MtrunA17_Chr2g0318391 29.814 161 101 5 10 166 14 166 1.18e-17 86.7
Msa0989490 MtrunA17_Chr8g0360731 31.579 152 80 7 10 146 14 156 4.42e-17 84.7
Msa0989490 MtrunA17_Chr6g0481511 32.500 120 65 5 10 122 31 141 5.07e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0989490 AT4G13350.1 45.143 700 274 22 1 688 1 602 2.53e-161 478
Msa0989490 AT4G13350.2 45.143 700 274 22 1 688 1 602 2.53e-161 478
Msa0989490 AT4G32630.2 33.889 720 346 26 5 687 1 627 1.15e-84 280
Msa0989490 AT4G32630.6 33.797 719 347 26 5 687 1 626 2.83e-84 278
Msa0989490 AT4G32630.4 33.797 719 347 26 5 687 1 626 2.83e-84 278
Msa0989490 AT4G32630.5 33.797 719 347 26 5 687 1 626 2.83e-84 278
Msa0989490 AT4G32630.3 33.797 719 347 26 5 687 1 626 2.83e-84 278
Msa0989490 AT4G32630.1 33.797 719 347 26 5 687 1 626 2.83e-84 278
Msa0989490 AT1G08680.3 57.485 167 70 1 1 166 1 167 7.59e-63 220
Msa0989490 AT1G08680.5 57.485 167 70 1 1 166 1 167 9.16e-63 219
Msa0989490 AT1G08680.4 57.485 167 70 1 1 166 1 167 1.44e-62 220
Msa0989490 AT1G08680.2 57.485 167 70 1 1 166 1 167 1.59e-62 220
Msa0989490 AT1G08680.1 57.485 167 70 1 1 166 1 167 1.70e-62 220
Msa0989490 AT5G54310.1 30.488 164 95 9 10 166 14 165 1.12e-15 80.9
Msa0989490 AT3G17660.1 27.966 118 75 3 10 124 14 124 6.88e-11 63.5
Msa0989490 AT3G17660.4 28.205 117 74 3 10 123 14 123 9.13e-11 62.0

Find 257 sgRNAs with CRISPR-Local

Find 573 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTACCTGATCAAGTTTC+TGG 0.127332 6_4:+46423322 Msa0989490:CDS
CCGGCCTGTTAGAGAAATTT+TGG 0.130425 6_4:+46422655 Msa0989490:CDS
TTCCTGTAATCTTATTATTT+TGG 0.158193 6_4:+46426075 Msa0989490:three_prime_UTR
GCCTGTCCACTGTTTGCTTT+GGG 0.218101 6_4:-46422713 None:intergenic
TGTAAATTATTTGTTGTTAT+AGG 0.219132 6_4:+46425825 Msa0989490:three_prime_UTR
GTTGCTTCATTAGCATCTTC+TGG 0.220268 6_4:+46423518 Msa0989490:CDS
TTCTGATGAGGTTCCATTAC+TGG 0.230296 6_4:-46423065 None:intergenic
CCCATTGACAGGCAGATATT+TGG 0.240230 6_4:-46425859 None:intergenic
CAAAGAAAGAGTGAAGAAAA+AGG 0.264539 6_4:-46417954 None:intergenic
AATATGTATGCACAAATTTC+TGG 0.268484 6_4:+46420462 Msa0989490:CDS
TGATTTATTTGAATAGTAAA+AGG 0.271199 6_4:-46417907 None:intergenic
GGTAATGAGGGAGCTGCTTT+TGG 0.276609 6_4:+46425557 Msa0989490:CDS
CGGCGCCAGTCATTGATTAT+TGG 0.285411 6_4:-46422506 None:intergenic
CATCAAGGAATTGGGACTTT+TGG 0.288342 6_4:+46425536 Msa0989490:CDS
CAGGAAGACGGAGTCGTATC+AGG 0.291055 6_4:+46422349 Msa0989490:CDS
TACCAAAATAATAAGATTAC+AGG 0.295172 6_4:-46426077 None:intergenic
TCTCCCAAAATTTCTCTAAC+AGG 0.296870 6_4:-46422659 None:intergenic
AGCCTGTCCACTGTTTGCTT+TGG 0.303716 6_4:-46422714 None:intergenic
CTGATACGACTCCGTCTTCC+TGG 0.305228 6_4:-46422348 None:intergenic
ATTGTGAACCCAACAAATTC+TGG 0.312108 6_4:+46423190 Msa0989490:CDS
TGCTGCTGATACTGCAAATT+AGG 0.317561 6_4:-46423581 None:intergenic
CCCATTTGCCAGCCTGGGAC+TGG 0.318787 6_4:-46424063 None:intergenic
CCAGTAATGTTGACAGGCTT+CGG 0.323021 6_4:+46421204 Msa0989490:intron
TGTTGCACCCTGTACAAATA+TGG 0.326246 6_4:+46425718 Msa0989490:three_prime_UTR
TCCAGTCCCAGGCTGGCAAA+TGG 0.328210 6_4:+46424062 Msa0989490:CDS
GTTGTGCTGTGCTGTGCTGC+TGG 0.333699 6_4:+46418051 Msa0989490:five_prime_UTR
CTTTGGCTCGTTCAAGAGAT+TGG 0.346177 6_4:-46422601 None:intergenic
AAGTTAAGCTTGAGACTATC+AGG 0.347652 6_4:+46423086 Msa0989490:CDS
CAAATTCTGGTGATAACAAT+TGG 0.350343 6_4:+46423203 Msa0989490:CDS
TGGGTAATCAATCTCTTTCC+TGG 0.352906 6_4:+46424953 Msa0989490:CDS
TGTGTGGCTTGAGGAATTAC+TGG 0.356143 6_4:-46423151 None:intergenic
ATTGAGTTCTATACCACTAT+AGG 0.360525 6_4:+46426151 Msa0989490:three_prime_UTR
GGTGCACCCATTTGCCAGCC+TGG 0.366079 6_4:-46424069 None:intergenic
TGTTTCACCTGCAGGGCCTT+TGG 0.366625 6_4:+46423427 Msa0989490:intron
TCTTCTTCTTCTTAGTTCTC+AGG 0.371790 6_4:+46418252 Msa0989490:five_prime_UTR
ATGTGTAGGCATCAAGGAAT+TGG 0.372319 6_4:+46425527 Msa0989490:intron
TTTCTGAGTTGGTGAAATTA+CGG 0.374040 6_4:-46418006 None:intergenic
CACTTTACAACCTTTACTCT+TGG 0.382920 6_4:-46421290 None:intergenic
ACAAATACTTACCCGCTATC+AGG 0.383672 6_4:-46421121 None:intergenic
GCTCAAAGAACCCAGGTCTT+TGG 0.385160 6_4:-46422618 None:intergenic
CCAGTCCCAGGCTGGCAAAT+GGG 0.389187 6_4:+46424063 Msa0989490:CDS
TGGCAAATGGGTGCACCGCC+TGG 0.389286 6_4:+46424075 Msa0989490:CDS
GAACATCATCAAAATCAATA+AGG 0.390657 6_4:-46423111 None:intergenic
CTTACGGTTGGGGCTTGAAC+TGG 0.391763 6_4:-46424308 None:intergenic
TACTCTTGGAGGTTTGTCAT+AGG 0.392405 6_4:-46421276 None:intergenic
TCCTTCCCTGCTCCAGTCCC+AGG 0.393386 6_4:+46424051 Msa0989490:CDS
TGCCAGCCTGGGACTGGAGC+AGG 0.395880 6_4:-46424057 None:intergenic
TTGATTATTGGAGGGCGGCC+AGG 0.396311 6_4:-46422494 None:intergenic
TTCACCTGCAGGGCCTTTGG+CGG 0.396650 6_4:+46423430 Msa0989490:intron
CTCCGTCTTCCTGGTGTCAT+AGG 0.401441 6_4:-46422339 None:intergenic
CACAGCACAGCACAACAACC+AGG 0.401521 6_4:-46418044 None:intergenic
TAACGAGGAGGGTGGATTCC+AGG 0.405464 6_4:-46424971 None:intergenic
TTACTCGATGAGTAAATTCC+CGG 0.408102 6_4:-46420883 None:intergenic
TTCAGTGATAGGTCTAGTTC+AGG 0.410605 6_4:+46422416 Msa0989490:CDS
AAGATGATGGAACTGACAAC+TGG 0.411564 6_4:-46423303 None:intergenic
CAGTAATGTTGACAGGCTTC+GGG 0.412464 6_4:+46421205 Msa0989490:intron
TCACCTGCAGGGCCTTTGGC+GGG 0.416171 6_4:+46423431 Msa0989490:intron
ACCTGAGGTAAAAGTATCTC+AGG 0.416540 6_4:+46423243 Msa0989490:CDS
AATGGGTGCACCGCCTGGCA+TGG 0.419401 6_4:+46424080 Msa0989490:CDS
ACTGGAGCAATAGGTGGTTC+AGG 0.420178 6_4:-46423133 None:intergenic
GCCAAATATCTGCCTGTCAA+TGG 0.421035 6_4:+46425858 Msa0989490:three_prime_UTR
CAGTTAATGCATCTTCGATT+CGG 0.423935 6_4:-46418942 None:intergenic
TGGCGCCGTGAAGATAGATT+TGG 0.426435 6_4:+46422521 Msa0989490:CDS
GTGTCTACAGTAGAAGTTTG+TGG 0.426996 6_4:-46423873 None:intergenic
TGAGGAATTACTGGAGCAAT+AGG 0.431257 6_4:-46423142 None:intergenic
TGTTATCACCAGAATTTGTT+GGG 0.433128 6_4:-46423198 None:intergenic
CTTTATCAAGCGTGTTTATG+TGG 0.435203 6_4:+46421229 Msa0989490:CDS
CATTTCTCAAAGGTTGTCAA+TGG 0.435836 6_4:+46423831 Msa0989490:CDS
TTGTTATCACCAGAATTTGT+TGG 0.440130 6_4:-46423199 None:intergenic
GGTTCGTTGATCACATCAAA+TGG 0.440527 6_4:-46424281 None:intergenic
TCTCTAACAGGCCGGACAAC+AGG 0.442542 6_4:-46422647 None:intergenic
ATGAACACCGTTTCAGTGAT+AGG 0.444146 6_4:+46422405 Msa0989490:CDS
CCTTGGCATTGGCACATTAG+TGG 0.445671 6_4:-46425163 None:intergenic
GGTGTAGATTGTTGAATAGT+AGG 0.446180 6_4:-46423635 None:intergenic
TGATTATTGGAGGGCGGCCA+GGG 0.446287 6_4:-46422493 None:intergenic
AACTTCAACCATATTTGTAC+AGG 0.446643 6_4:-46425726 None:intergenic
TCCCTGCTCCAGTCCCAGGC+TGG 0.447450 6_4:+46424055 Msa0989490:CDS
GGAAGTTCATTTCTTCCACT+TGG 0.447805 6_4:-46423900 None:intergenic
AGCATGTTAAATTAACTGTT+TGG 0.451221 6_4:+46426121 Msa0989490:three_prime_UTR
AACAGTGGACAGGCTGCTAA+TGG 0.451438 6_4:+46422722 Msa0989490:CDS
TGTTCATATGTATCCTCATA+AGG 0.454388 6_4:-46422389 None:intergenic
ATAGTGGTATAGAACTCAAT+CGG 0.458952 6_4:-46426148 None:intergenic
GATTGATTACCCATGTTTGA+AGG 0.460288 6_4:-46424943 None:intergenic
ATTTCTCAAAGGTTGTCAAT+GGG 0.460296 6_4:+46423832 Msa0989490:CDS
CTCCTTTGATGTTGCACCTG+AGG 0.462386 6_4:+46423228 Msa0989490:CDS
TGAGCCCACCACCTGTTGTC+CGG 0.463311 6_4:+46422636 Msa0989490:CDS
TTTACAACCTTTACTCTTGG+AGG 0.463494 6_4:-46421287 None:intergenic
CCAAATATCTGCCTGTCAAT+GGG 0.464451 6_4:+46425859 Msa0989490:three_prime_UTR
AGAGAGAGATCTTTCTGAGT+TGG 0.466902 6_4:-46418017 None:intergenic
ACTTTAAACCCCTTCCCTGC+AGG 0.470044 6_4:+46425629 Msa0989490:CDS
CCTTGCAAAGATGACATAGA+AGG 0.470966 6_4:-46424883 None:intergenic
ATTACTGGATGCCAAGCTAC+TGG 0.471659 6_4:-46423050 None:intergenic
ACAGGCCGGACAACAGGTGG+TGG 0.473980 6_4:-46422641 None:intergenic
GATGTTCACAGTTGGAGCTC+CGG 0.474090 6_4:-46423474 None:intergenic
ATTGAAATTACTTACGGTTG+GGG 0.477287 6_4:-46424318 None:intergenic
CATATTCATGCCTCAGCAAT+GGG 0.480130 6_4:+46425024 Msa0989490:CDS
CCTTCTATGTCATCTTTGCA+AGG 0.482591 6_4:+46424883 Msa0989490:CDS
TGTGTAGGCATCAAGGAATT+GGG 0.485262 6_4:+46425528 Msa0989490:intron
TAAAATCTCAGGGGCGTACA+TGG 0.485361 6_4:+46425128 Msa0989490:intron
GCCTGGGACTGGAGCAGGGA+AGG 0.486363 6_4:-46424052 None:intergenic
CGCCAGTCATTGATTATTGG+AGG 0.486736 6_4:-46422503 None:intergenic
AGTTCAGGTGGAAGAAGTCC+TGG 0.490126 6_4:+46422431 Msa0989490:CDS
ACTTCAAGAAGGAGGAAATC+AGG 0.490868 6_4:+46420949 Msa0989490:CDS
CCGAATGGATTACCTCCTGC+AGG 0.494585 6_4:-46425644 None:intergenic
TGCAGTAAACCCTTCAAACA+TGG 0.495545 6_4:+46424933 Msa0989490:CDS
CTCATTCTTTACCTGATAGC+GGG 0.496064 6_4:+46421110 Msa0989490:CDS
AAAGATCTCTCTCTCTTCCC+TGG 0.496233 6_4:+46418026 Msa0989490:five_prime_UTR
TGTCTTTCTTGATCATATCC+AGG 0.498660 6_4:-46422449 None:intergenic
TCAGTTAGAACCCTAAAAGT+TGG 0.501923 6_4:-46418185 None:intergenic
GTTGGGGCTTGAACTGGTGT+TGG 0.503130 6_4:-46424302 None:intergenic
GTGCACCCATTTGCCAGCCT+GGG 0.503540 6_4:-46424068 None:intergenic
AAATGTGGCACTAGCGTGCT+TGG 0.504258 6_4:-46423813 None:intergenic
CTTGGCATTGGCACATTAGT+GGG 0.504879 6_4:-46425162 None:intergenic
CGAGTGGATTTACATTTGAA+AGG 0.505809 6_4:-46423267 None:intergenic
CATCTCCAAATCTATCTTCA+CGG 0.506927 6_4:-46422526 None:intergenic
AAATTCTGGTGATAACAATT+GGG 0.507260 6_4:+46423204 Msa0989490:CDS
AACGGCATCTTCCAGTAGCT+TGG 0.507476 6_4:+46423039 Msa0989490:CDS
TGTTGTTATAGGAAAGATGA+AGG 0.509927 6_4:+46425836 Msa0989490:three_prime_UTR
AAATTTGTGCATACATATTG+TGG 0.510892 6_4:-46420458 None:intergenic
CAATTACTCGTCTAGGCGAA+AGG 0.511824 6_4:-46425937 None:intergenic
TTATTCAAAGCTCCACCTAC+TGG 0.512473 6_4:-46423659 None:intergenic
GCCGATCATAAGAGAAGCCC+TGG 0.515583 6_4:+46422476 Msa0989490:CDS
GAAGATAATCGTATAACTGA+TGG 0.516298 6_4:+46422560 Msa0989490:CDS
ATGGGTGCACCGCCTGGCAT+GGG 0.517111 6_4:+46424081 Msa0989490:CDS
TGTCCACTGTTTGCTTTGGG+AGG 0.517269 6_4:-46422710 None:intergenic
AATATAGATCAGCAACTGAA+TGG 0.517650 6_4:+46425587 Msa0989490:CDS
ACTTGATCAGGTAAAGATGA+TGG 0.520316 6_4:-46423316 None:intergenic
GCTAATGAAGCAACACTGGA+TGG 0.520961 6_4:-46423509 None:intergenic
AACTAGACCTATCACTGAAA+CGG 0.523791 6_4:-46422412 None:intergenic
AACTGATGGAGGTATTAAGA+TGG 0.524130 6_4:+46422574 Msa0989490:CDS
TATGTGGATAGGAGATTCAC+TGG 0.527674 6_4:+46421245 Msa0989490:CDS
TGGATTACCTCCTGCAGGGA+AGG 0.529326 6_4:-46425639 None:intergenic
CCTGCAGGAGGTAATCCATT+CGG 0.529389 6_4:+46425644 Msa0989490:CDS
ACATTGCAGTAATCCTATAG+TGG 0.534607 6_4:-46426164 None:intergenic
AATTACTCGTCTAGGCGAAA+GGG 0.535512 6_4:-46425936 None:intergenic
GATTACCTCCTGCAGGGAAG+GGG 0.535685 6_4:-46425637 None:intergenic
GTTTAAGCTGCTGACGGTGA+TGG 0.537416 6_4:-46418088 None:intergenic
TGATACTGCAAATTAGGCCA+TGG 0.537541 6_4:-46423575 None:intergenic
GGAGATGACAAGTCGACTAA+AGG 0.537579 6_4:+46418872 Msa0989490:exon
ACATATTCATGCCTCAGCAA+TGG 0.538067 6_4:+46425023 Msa0989490:CDS
ATAGTGTGTTATGGTGATCA+TGG 0.538561 6_4:+46425998 Msa0989490:three_prime_UTR
TGAAATAGTTACCTTGGCAT+TGG 0.541368 6_4:-46425174 None:intergenic
GCCCTCCAATAATCAATGAC+TGG 0.541872 6_4:+46422501 Msa0989490:CDS
TGACAAACCTCCAAGAGTAA+AGG 0.542212 6_4:+46421280 Msa0989490:CDS
TACCTCAGGTGCAACATCAA+AGG 0.543204 6_4:-46423230 None:intergenic
AACTGAATGTGTAGGCATCA+AGG 0.543374 6_4:+46425521 Msa0989490:intron
ATGATGACCGATCTCTATGC+TGG 0.544642 6_4:-46425782 None:intergenic
CCTAAAACAATTACTCGTCT+AGG 0.545508 6_4:-46425944 None:intergenic
GCTTTGTACAGCTGAGAATG+AGG 0.548787 6_4:-46417984 None:intergenic
ACTGTACGACTCCCATTGAC+AGG 0.549231 6_4:-46425870 None:intergenic
TTTGTAGATTGTGATGGTTG+TGG 0.549399 6_4:-46424257 None:intergenic
TTGGTGCCAGTAATGTTGAC+AGG 0.551074 6_4:+46421198 Msa0989490:intron
GGATTACCTCCTGCAGGGAA+GGG 0.552909 6_4:-46425638 None:intergenic
ACAGCACAGCACAACAACCA+GGG 0.552964 6_4:-46418043 None:intergenic
CATGGGAGTGCATTATTGAA+AGG 0.553116 6_4:-46423557 None:intergenic
GAAGGGTTTACTGCAGCTGA+AGG 0.554095 6_4:-46424925 None:intergenic
TTGTGCAGTAAATTTAGCCA+TGG 0.554246 6_4:-46420915 None:intergenic
GTTTCCTCTCGACTAAAGAA+TGG 0.554597 6_4:-46425756 None:intergenic
ATTGATTACCCATGTTTGAA+GGG 0.554638 6_4:-46424942 None:intergenic
CCAAAATTTCTCTAACAGGC+CGG 0.556026 6_4:-46422655 None:intergenic
TAGTGGTATAGAACTCAATC+GGG 0.556059 6_4:-46426147 None:intergenic
TGGACTCCAGAAACTTGATC+AGG 0.560113 6_4:-46423328 None:intergenic
TCTTGAACGAGCCAAAGACC+TGG 0.560518 6_4:+46422607 Msa0989490:CDS
GCCAGGGCTTCTCTTATGAT+CGG 0.560564 6_4:-46422477 None:intergenic
AGATGCTAATGAAGCAACAC+TGG 0.561491 6_4:-46423513 None:intergenic
TCCCAAAGCAAACAGTGGAC+AGG 0.562444 6_4:+46422712 Msa0989490:CDS
AGTAGCTTGGCATCCAGTAA+TGG 0.562519 6_4:+46423052 Msa0989490:CDS
ATAGGAGATTCACTGGCGAC+AGG 0.563351 6_4:+46421252 Msa0989490:CDS
AGGTGGAGCTTTGAATAACC+AGG 0.563485 6_4:+46423664 Msa0989490:CDS
GTTGCGAAGATGTTCACAGT+TGG 0.565416 6_4:-46423482 None:intergenic
GGGTGCAACAAATTGATGCT+TGG 0.567517 6_4:-46425705 None:intergenic
TGAGCTGATGAATTCGAGAA+AGG 0.569428 6_4:+46425903 Msa0989490:three_prime_UTR
CTCAAGCTTAACTTCTGATG+AGG 0.569730 6_4:-46423077 None:intergenic
TTGAGCCACGGTAGTTTGTG+TGG 0.569914 6_4:-46423167 None:intergenic
AGATGCTTAATAGTGTGTTA+TGG 0.570213 6_4:+46425989 Msa0989490:three_prime_UTR
TGTACCATTCTTTAGTCGAG+AGG 0.571743 6_4:+46425752 Msa0989490:three_prime_UTR
TAGATCAGCAACTGAATGGT+AGG 0.571969 6_4:+46425591 Msa0989490:CDS
TCAAGCGTGTTTATGTGGAT+AGG 0.573093 6_4:+46421234 Msa0989490:CDS
AATGGATTTGTAGATTGTGA+TGG 0.576263 6_4:-46424263 None:intergenic
GAAGTTAGTGCACTTCAAGA+AGG 0.576846 6_4:+46420938 Msa0989490:CDS
GCCAGTCATTGATTATTGGA+GGG 0.578746 6_4:-46422502 None:intergenic
TGAACTGAGACACCCATGCC+AGG 0.578979 6_4:-46424093 None:intergenic
GCAGCTGAAGGCGCTACACT+AGG 0.581634 6_4:-46424913 None:intergenic
GATCAAGTTTCTGGAGTCCA+AGG 0.581773 6_4:+46423331 Msa0989490:CDS
AGCATCTTCTGGATTGACAA+TGG 0.582951 6_4:+46423529 Msa0989490:CDS
CTAATGAAGCAACACTGGAT+GGG 0.584550 6_4:-46423508 None:intergenic
AGTGATAGGTCTAGTTCAGG+TGG 0.585327 6_4:+46422419 Msa0989490:CDS
TTTGTTTGCACAAACTGCAG+TGG 0.586368 6_4:+46420488 Msa0989490:CDS
TTGACAACCTTTGAGAAATG+TGG 0.587864 6_4:-46423828 None:intergenic
TCAGCTCTTACTGCTACTGC+CGG 0.589167 6_4:+46423455 Msa0989490:CDS
GCCAGCCTGGGACTGGAGCA+GGG 0.589815 6_4:-46424056 None:intergenic
GAAGGGGTTTAAAGTAGCAG+AGG 0.592775 6_4:-46425621 None:intergenic
GATACTGCAAATTAGGCCAT+GGG 0.593319 6_4:-46423574 None:intergenic
GTTAGTGCACTTCAAGAAGG+AGG 0.597643 6_4:+46420941 Msa0989490:CDS
AGGAAGACGGAGTCGTATCA+GGG 0.597957 6_4:+46422350 Msa0989490:CDS
TTTCTCAAAGGTTGTCAATG+GGG 0.599288 6_4:+46423833 Msa0989490:CDS
AAATCTTAAGATCATCCGAA+TGG 0.599296 6_4:-46425659 None:intergenic
AAGATAGATTTGGAGATGGA+CGG 0.599785 6_4:+46422531 Msa0989490:CDS
CAACAAATAATTTACAAGCA+AGG 0.601128 6_4:-46425818 None:intergenic
CCACTAATGTGCCAATGCCA+AGG 0.601289 6_4:+46425163 Msa0989490:CDS
GCATCTGACGCTACAACACA+AGG 0.601374 6_4:-46425972 None:intergenic
TCGAGTAAAATCAATCTCCA+TGG 0.602286 6_4:+46420898 Msa0989490:CDS
CTTGAACGAGCCAAAGACCT+GGG 0.608680 6_4:+46422608 Msa0989490:CDS
CCGTTGTTCACATCTGCTGT+TGG 0.610741 6_4:+46423608 Msa0989490:CDS
TGTGCTTGTGGAGGGAGCGT+TGG 0.610899 6_4:-46425003 None:intergenic
TTAAACCCCTTCCCTGCAGG+AGG 0.611118 6_4:+46425632 Msa0989490:CDS
ACTCATTCTTTACCTGATAG+CGG 0.615061 6_4:+46421109 Msa0989490:CDS
GATAATCGTATAACTGATGG+AGG 0.619976 6_4:+46422563 Msa0989490:CDS
GGAATTACTGGAGCAATAGG+TGG 0.620928 6_4:-46423139 None:intergenic
CAATCTACACCACCAGTAGG+TGG 0.623047 6_4:+46423647 Msa0989490:CDS
ACGGTAGTTTGTGTGGCTTG+AGG 0.623732 6_4:-46423160 None:intergenic
GCATCTCATACAGGGCGACA+AGG 0.624797 6_4:+46422310 Msa0989490:intron
AGTTCAATATAATAATGTGA+TGG 0.625728 6_4:+46424110 Msa0989490:CDS
GAGGCATGAATATGTGCTTG+TGG 0.625753 6_4:-46425015 None:intergenic
CGTGAAGATAGATTTGGAGA+TGG 0.626673 6_4:+46422527 Msa0989490:CDS
CTTTCAATAATGCACTCCCA+TGG 0.627451 6_4:+46423558 Msa0989490:CDS
GCTAGTGCCACATTTCTCAA+AGG 0.627904 6_4:+46423821 Msa0989490:CDS
TTCCTATGACACCAGGAAGA+CGG 0.630287 6_4:+46422337 Msa0989490:CDS
TTCAAAGCTCCACCTACTGG+TGG 0.631043 6_4:-46423656 None:intergenic
GCAGTAAACCCTTCAAACAT+GGG 0.631363 6_4:+46424934 Msa0989490:CDS
GCAACTGAATGGTAGGTCGT+CGG 0.633722 6_4:+46425598 Msa0989490:CDS
CAGGCCGGACAACAGGTGGT+GGG 0.637390 6_4:-46422640 None:intergenic
AAACACTCCAGCATAGAGAT+CGG 0.638162 6_4:+46425775 Msa0989490:three_prime_UTR
ACTGTAGACACAAAACCAAG+TGG 0.639870 6_4:+46423885 Msa0989490:CDS
TGTGATGGTTGTGGAAAACT+CGG 0.641253 6_4:-46424248 None:intergenic
GCATATGATAACGAGGAGGG+TGG 0.642199 6_4:-46424979 None:intergenic
CAAAGAATAATAATACAACC+AGG 0.642380 6_4:-46426035 None:intergenic
CATGAATATGTGCTTGTGGA+GGG 0.642440 6_4:-46425011 None:intergenic
CGAATGGATTACCTCCTGCA+GGG 0.644063 6_4:-46425643 None:intergenic
ATGCATTAACTGCAACAGCA+TGG 0.645179 6_4:+46418953 Msa0989490:CDS
CTAACAGGCCGGACAACAGG+TGG 0.645439 6_4:-46422644 None:intergenic
TGGAAGAAATGAACTTCCTG+AGG 0.645779 6_4:+46423905 Msa0989490:CDS
AGTCATTGATTATTGGAGGG+CGG 0.647052 6_4:-46422499 None:intergenic
CTCAGGTGCAACATCAAAGG+AGG 0.648644 6_4:-46423227 None:intergenic
TAATGGCTCAACACTCACAC+AGG 0.649534 6_4:+46422739 Msa0989490:CDS
CGTTGGTGCATATGATAACG+AGG 0.649957 6_4:-46424986 None:intergenic
TGGTTGTGGAAAACTCGGCA+TGG 0.650360 6_4:-46424243 None:intergenic
TGGGTTCACAATTTGAGCCA+CGG 0.651378 6_4:-46423179 None:intergenic
TGGGACAGCATCGATTCGAG+TGG 0.652918 6_4:-46423283 None:intergenic
AGGATGATTCCTATGACACC+AGG 0.654640 6_4:+46422330 Msa0989490:CDS
AGATGATGGAACTGACAACT+GGG 0.654939 6_4:-46423302 None:intergenic
GTAAGAGCTGATCCCGCCAA+AGG 0.656856 6_4:-46423443 None:intergenic
ACTTCAACCATATTTGTACA+GGG 0.657209 6_4:-46425725 None:intergenic
CCTGAGGTAAAAGTATCTCA+GGG 0.657396 6_4:+46423244 Msa0989490:CDS
GGTGCATATGATAACGAGGA+GGG 0.662239 6_4:-46424982 None:intergenic
CAACAATCTACACCACCAGT+AGG 0.664477 6_4:+46423644 Msa0989490:CDS
GCATGAATATGTGCTTGTGG+AGG 0.669871 6_4:-46425012 None:intergenic
GGAGGTTCACTAATTCGCAG+AGG 0.674693 6_4:-46422692 None:intergenic
TATACTTGGTCCCATTGCTG+AGG 0.675665 6_4:-46425034 None:intergenic
GTGGTGGGCTCAAAGAACCC+AGG 0.678153 6_4:-46422625 None:intergenic
GAACCTCCCAAAGCAAACAG+TGG 0.681218 6_4:+46422707 Msa0989490:CDS
TCAAGCCACACAAACTACCG+TGG 0.714114 6_4:+46423162 Msa0989490:CDS
TGGTGCATATGATAACGAGG+AGG 0.724647 6_4:-46424983 None:intergenic
ACTGAGACACCCATGCCAGG+CGG 0.743510 6_4:-46424090 None:intergenic
AAGTTGGTATAAAAGAGACG+TGG 0.743868 6_4:-46418169 None:intergenic
CCAACAGCAGATGTGAACAA+CGG 0.748816 6_4:-46423608 None:intergenic
AAGACGGAGTCGTATCAGGG+AGG 0.754193 6_4:+46422353 Msa0989490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGGATTTTTTTTTTTTTTT+TGG - chr6_4:46417891-46417910 None:intergenic 10.0%
!! AATAATTAATTTAAAAAGGT+TGG - chr6_4:46419200-46419219 None:intergenic 10.0%
!! CTTGAATAATTAATTTAAAA+AGG - chr6_4:46419204-46419223 None:intergenic 10.0%
!! TGATTTATTTGAATAGTAAA+AGG - chr6_4:46417910-46417929 None:intergenic 15.0%
!! AAATTAATTATTCAAGATGA+AGG + chr6_4:46419208-46419227 Msa0989490:intron 15.0%
!! AATTAATTATTCAAGATGAA+GGG + chr6_4:46419209-46419228 Msa0989490:intron 15.0%
!! GAAAAATACAATTAATATAC+AGG - chr6_4:46420705-46420724 None:intergenic 15.0%
!! TAAAAAATCAGTTTAGAAAT+GGG - chr6_4:46420850-46420869 None:intergenic 15.0%
!! ATAAAAAATCAGTTTAGAAA+TGG - chr6_4:46420851-46420870 None:intergenic 15.0%
!! AAAATAATATGTAACATCAA+TGG - chr6_4:46421018-46421037 None:intergenic 15.0%
!!! AAGAAATATTTTTCAAAGAA+TGG + chr6_4:46421077-46421096 Msa0989490:CDS 15.0%
!!! AGAAATATTTTTCAAAGAAT+GGG + chr6_4:46421078-46421097 Msa0989490:CDS 15.0%
!!! TTCTTTTTCTTTTTAATTCT+AGG + chr6_4:46421152-46421171 Msa0989490:intron 15.0%
!!! TCTTTTTCTTTTTAATTCTA+GGG + chr6_4:46421153-46421172 Msa0989490:intron 15.0%
!! TATATAGAATATGCTTAAAA+TGG - chr6_4:46421346-46421365 None:intergenic 15.0%
!! ATGTAAAATTGTAGTAATAA+TGG - chr6_4:46421592-46421611 None:intergenic 15.0%
!!! ATTTTTTTACTTTCAAAAAG+TGG + chr6_4:46421855-46421874 Msa0989490:intron 15.0%
!! CAATATAGAAATATTGTATT+AGG - chr6_4:46421903-46421922 None:intergenic 15.0%
!!! CTAATACAATATTTCTATAT+TGG + chr6_4:46421901-46421920 Msa0989490:intron 15.0%
!!! TTTACTAAGAAATTTTTTCA+AGG + chr6_4:46422844-46422863 Msa0989490:intron 15.0%
!!! TTACTAAGAAATTTTTTCAA+GGG + chr6_4:46422845-46422864 Msa0989490:intron 15.0%
!!! TCAAATAGAAAATCAATTTT+CGG - chr6_4:46422981-46423000 None:intergenic 15.0%
!! ACATAAATTGAAATTACTTA+CGG - chr6_4:46424327-46424346 None:intergenic 15.0%
!! GAATCATTATTAATTACTAT+CGG + chr6_4:46424420-46424439 Msa0989490:intron 15.0%
!! TTCTTATTATTAATACGATA+AGG - chr6_4:46424608-46424627 None:intergenic 15.0%
!! GTATTAATAATAAGAATGAT+GGG + chr6_4:46424612-46424631 Msa0989490:intron 15.0%
!! AAATTAATCTAACTTAAAAC+AGG - chr6_4:46425227-46425246 None:intergenic 15.0%
!! GTAAATTTATTATGATTGTA+TGG + chr6_4:46425448-46425467 Msa0989490:intron 15.0%
!!! TGTAAATTATTTGTTGTTAT+AGG + chr6_4:46425825-46425844 Msa0989490:three_prime_UTR 15.0%
!!! TAATCTTATTATTTTGGTAA+AGG + chr6_4:46426081-46426100 Msa0989490:three_prime_UTR 15.0%
!!! ATGATCAAAATCAATTTTCA+CGG - chr6_4:46418461-46418480 None:intergenic 20.0%
!!! TATGCCATTTAATATACTAT+AGG + chr6_4:46419027-46419046 Msa0989490:intron 20.0%
!! TTGTCCTATAGTATATTAAA+TGG - chr6_4:46419034-46419053 None:intergenic 20.0%
!! ATTAATTATTCAAGATGAAG+GGG + chr6_4:46419210-46419229 Msa0989490:intron 20.0%
!! TTCGAAAGAAGTAAAATAAA+TGG + chr6_4:46419426-46419445 Msa0989490:intron 20.0%
!! TTGTTAATAAAATGTGTAGT+AGG - chr6_4:46419482-46419501 None:intergenic 20.0%
!! TTTAATAAAAGATTCAGTGT+TGG - chr6_4:46419944-46419963 None:intergenic 20.0%
!! TGTTGAATAGATATTTCTTA+AGG + chr6_4:46420580-46420599 Msa0989490:intron 20.0%
!!! TACTAAATATGTTTTTCCTT+TGG + chr6_4:46420784-46420803 Msa0989490:intron 20.0%
!!! GATACACTAAATTTTATTGT+AGG + chr6_4:46421407-46421426 Msa0989490:intron 20.0%
!! CTTAATGAAATGAAAATGTT+GGG + chr6_4:46421524-46421543 Msa0989490:intron 20.0%
!! TTAATGAAATGAAAATGTTG+GGG + chr6_4:46421525-46421544 Msa0989490:intron 20.0%
!!! GTAATAATGGAAAATAAGTT+AGG - chr6_4:46421579-46421598 None:intergenic 20.0%
!!! TTATTGGTTCAATTTGTTTA+CGG + chr6_4:46421621-46421640 Msa0989490:intron 20.0%
!! TATTCAATTAGTGCTTAATT+AGG - chr6_4:46421979-46421998 None:intergenic 20.0%
!! AGTTCAATATAATAATGTGA+TGG + chr6_4:46424110-46424129 Msa0989490:CDS 20.0%
!! CGTATTAATAATAAGAATGA+TGG + chr6_4:46424611-46424630 Msa0989490:intron 20.0%
!! TAGGCAAAAAATAATTGATT+GGG - chr6_4:46425074-46425093 None:intergenic 20.0%
!! ATAGGCAAAAAATAATTGAT+TGG - chr6_4:46425075-46425094 None:intergenic 20.0%
!! AAATAAAGTTCAAATAGCAT+AGG - chr6_4:46425093-46425112 None:intergenic 20.0%
!!! TTAGATTAATTTTTTGCTCT+TGG + chr6_4:46425235-46425254 Msa0989490:intron 20.0%
!! TGTGTGTTTATTATGAATAA+CGG - chr6_4:46425328-46425347 None:intergenic 20.0%
!!! TTCCTGTAATCTTATTATTT+TGG + chr6_4:46426075-46426094 Msa0989490:three_prime_UTR 20.0%
!! TACCAAAATAATAAGATTAC+AGG - chr6_4:46426080-46426099 None:intergenic 20.0%
! AAAGAAAGAGTGAAGAAAAA+GGG - chr6_4:46417956-46417975 None:intergenic 25.0%
!! TCTCTTTTATACCAACTTTT+AGG + chr6_4:46418174-46418193 Msa0989490:five_prime_UTR 25.0%
!! CTCTTTTATACCAACTTTTA+GGG + chr6_4:46418175-46418194 Msa0989490:five_prime_UTR 25.0%
!! ATGGATGATGATCATATTTT+CGG + chr6_4:46418395-46418414 Msa0989490:intron 25.0%
!!! GATAAGTTTTAGTTAGTGTT+TGG + chr6_4:46418428-46418447 Msa0989490:intron 25.0%
! AGTGAATAAATCATGTTTGA+GGG + chr6_4:46418578-46418597 Msa0989490:intron 25.0%
!! CTATGTTTGAATTCAGTTTT+TGG - chr6_4:46418730-46418749 None:intergenic 25.0%
! GTTAATTTCTTTGTAGTTCT+TGG + chr6_4:46418749-46418768 Msa0989490:intron 25.0%
! TTATTTGTGAATTGCTTGAT+TGG + chr6_4:46418797-46418816 Msa0989490:intron 25.0%
! TATATAACAGCAGCAAAAAA+TGG + chr6_4:46419263-46419282 Msa0989490:intron 25.0%
!!! TCTTTTGTTACTTGATGATA+TGG + chr6_4:46419348-46419367 Msa0989490:intron 25.0%
! TCCATAATAACAACCAAAAA+CGG + chr6_4:46419389-46419408 Msa0989490:intron 25.0%
! AAAGTCAATAAAATAGTGAG+AGG + chr6_4:46419553-46419572 Msa0989490:intron 25.0%
! TGGTAACAATCAAGTAATAT+TGG + chr6_4:46419661-46419680 Msa0989490:intron 25.0%
! TACTTTGTAGCAACTTTAAA+TGG + chr6_4:46419844-46419863 Msa0989490:intron 25.0%
! TTTGATTATGCTATAGTGTA+TGG + chr6_4:46419878-46419897 Msa0989490:intron 25.0%
! CAAAAATAAAACACTATCCA+TGG - chr6_4:46420030-46420049 None:intergenic 25.0%
!!! TCAGAATTTTGTTTATGTCA+TGG + chr6_4:46420083-46420102 Msa0989490:intron 25.0%
!!! CTCTTTGGTTTTAACTTTAA+TGG - chr6_4:46420116-46420135 None:intergenic 25.0%
! TAGAGGAGACTAATTAATTA+GGG - chr6_4:46420156-46420175 None:intergenic 25.0%
! CAAATTTATCTCTTCATTCA+AGG - chr6_4:46420200-46420219 None:intergenic 25.0%
! AAATTTGTGCATACATATTG+TGG - chr6_4:46420461-46420480 None:intergenic 25.0%
! AATATGTATGCACAAATTTC+TGG + chr6_4:46420462-46420481 Msa0989490:CDS 25.0%
! AGTATACAATTTATGAACTC+CGG - chr6_4:46420768-46420787 None:intergenic 25.0%
!! TTTTTATGTTAATTTCCAGC+CGG + chr6_4:46420864-46420883 Msa0989490:intron 25.0%
! ATTACTCTTATTGTCATGTT+TGG + chr6_4:46421179-46421198 Msa0989490:intron 25.0%
! GCTTAATGAAATGAAAATGT+TGG + chr6_4:46421523-46421542 Msa0989490:intron 25.0%
! TAATGAAATGAAAATGTTGG+GGG + chr6_4:46421526-46421545 Msa0989490:intron 25.0%
! AATAAAATCTTACTCCAACA+TGG - chr6_4:46421683-46421702 None:intergenic 25.0%
!!! TTTTTTGGAATTCAACATGT+AGG + chr6_4:46421708-46421727 Msa0989490:intron 25.0%
!!! TTTTTGGAATTCAACATGTA+GGG + chr6_4:46421709-46421728 Msa0989490:intron 25.0%
! AAATATTGTATTAGGAAGTG+TGG - chr6_4:46421895-46421914 None:intergenic 25.0%
!!! CATATTTTAATAAGCTCTTC+AGG - chr6_4:46422093-46422112 None:intergenic 25.0%
! GACTAATGAACAACATATTT+GGG - chr6_4:46422200-46422219 None:intergenic 25.0%
! TGACTAATGAACAACATATT+TGG - chr6_4:46422201-46422220 None:intergenic 25.0%
! CAATGATGTTCTTAATAATG+TGG + chr6_4:46422773-46422792 Msa0989490:intron 25.0%
! TGGTTTACATGAAATCATTA+TGG + chr6_4:46422895-46422914 Msa0989490:intron 25.0%
! GAACATCATCAAAATCAATA+AGG - chr6_4:46423114-46423133 None:intergenic 25.0%
! AAATTCTGGTGATAACAATT+GGG + chr6_4:46423204-46423223 Msa0989490:CDS 25.0%
! AATTGAAATTACTTACGGTT+GGG - chr6_4:46424322-46424341 None:intergenic 25.0%
! AAATTGAAATTACTTACGGT+TGG - chr6_4:46424323-46424342 None:intergenic 25.0%
! CATTATTAATTACTATCGGT+TGG + chr6_4:46424424-46424443 Msa0989490:intron 25.0%
! ATATATTTATCTTCCACCAA+TGG - chr6_4:46424488-46424507 None:intergenic 25.0%
! AAAACTCAATAACTTAACAG+AGG - chr6_4:46424524-46424543 None:intergenic 25.0%
! CTATTAAAGAAAGCAATCTT+CGG - chr6_4:46424580-46424599 None:intergenic 25.0%
! AAGATTGCTTTCTTTAATAG+AGG + chr6_4:46424580-46424599 Msa0989490:intron 25.0%
! TTTATCATCTGACATTGAAA+AGG + chr6_4:46424670-46424689 Msa0989490:intron 25.0%
!! TTTTCCTAACATAAATTGAC+AGG - chr6_4:46424774-46424793 None:intergenic 25.0%
! TATGTTAGGAAAACAGATAA+TGG + chr6_4:46424781-46424800 Msa0989490:intron 25.0%
! TGCATTAACTGAAAGAATTA+TGG - chr6_4:46424818-46424837 None:intergenic 25.0%
!! GAAATGATAAAAGGTATACT+TGG - chr6_4:46425051-46425070 None:intergenic 25.0%
! AGGCAAAAAATAATTGATTG+GGG - chr6_4:46425073-46425092 None:intergenic 25.0%
! ATGCAAACAGTAAATAGATA+TGG - chr6_4:46425202-46425221 None:intergenic 25.0%
! GTGTGTTTATTATGAATAAC+GGG - chr6_4:46425327-46425346 None:intergenic 25.0%
! ACACTGAATATATAGAATTG+AGG - chr6_4:46425361-46425380 None:intergenic 25.0%
! TTTGTGAAGTAATCTGTTTA+AGG + chr6_4:46425426-46425445 Msa0989490:intron 25.0%
!!! TGGATAGAGTTGATAATTAT+TGG + chr6_4:46425468-46425487 Msa0989490:intron 25.0%
! CAACAAATAATTTACAAGCA+AGG - chr6_4:46425821-46425840 None:intergenic 25.0%
!!! ATGGTTGTATTTTTTTTTCC+TGG + chr6_4:46426017-46426036 Msa0989490:three_prime_UTR 25.0%
! CAAAGAATAATAATACAACC+AGG - chr6_4:46426038-46426057 None:intergenic 25.0%
!!! ATTCTTTGATTTTGCTATTC+TGG + chr6_4:46426050-46426069 Msa0989490:three_prime_UTR 25.0%
! AGCATGTTAAATTAACTGTT+TGG + chr6_4:46426121-46426140 Msa0989490:three_prime_UTR 25.0%
CAAAGAAAGAGTGAAGAAAA+AGG - chr6_4:46417957-46417976 None:intergenic 30.0%
! CTTTTTCTTCACTCTTTCTT+TGG + chr6_4:46417955-46417974 Msa0989490:five_prime_UTR 30.0%
!! TTTCTGAGTTGGTGAAATTA+CGG - chr6_4:46418009-46418028 None:intergenic 30.0%
!!! TTTTTTGTTTAAGCTGCTGA+CGG - chr6_4:46418097-46418116 None:intergenic 30.0%
! CTTGATTTTTCCTAGAATCT+AGG + chr6_4:46418364-46418383 Msa0989490:intron 30.0%
GAGTGAATAAATCATGTTTG+AGG + chr6_4:46418577-46418596 Msa0989490:intron 30.0%
! ACCGCTAAAATTGATTCTAA+CGG - chr6_4:46418629-46418648 None:intergenic 30.0%
TTTGATGTGTTTAACAGAAG+CGG + chr6_4:46418851-46418870 Msa0989490:intron 30.0%
AAAAATGAACGAACTATTCG+AGG + chr6_4:46418903-46418922 Msa0989490:CDS 30.0%
!! TTAAAAAGGTTGGTGTAGAT+AGG - chr6_4:46419190-46419209 None:intergenic 30.0%
GCAAAAAATGGTAGAATAGA+AGG + chr6_4:46419275-46419294 Msa0989490:intron 30.0%
ACCATGTTTGAGCAAAAAAA+AGG + chr6_4:46419308-46419327 Msa0989490:intron 30.0%
!!! ACCTTTTTTTTGCTCAAACA+TGG - chr6_4:46419312-46419331 None:intergenic 30.0%
!!! ACCGTTTTTGGTTGTTATTA+TGG - chr6_4:46419393-46419412 None:intergenic 30.0%
! CAAGTGTATTTTACCGTTTT+TGG - chr6_4:46419405-46419424 None:intergenic 30.0%
! AAATAAATGGTAATGCATCG+AGG + chr6_4:46419439-46419458 Msa0989490:intron 30.0%
AAGATGTAAATTATGACCGA+TGG + chr6_4:46419626-46419645 Msa0989490:intron 30.0%
AGATGTAAATTATGACCGAT+GGG + chr6_4:46419627-46419646 Msa0989490:intron 30.0%
! GTAAAAAAGAAGTGTATCAC+AGG - chr6_4:46419691-46419710 None:intergenic 30.0%
ATCTACAGAATCATATGCAT+GGG + chr6_4:46419712-46419731 Msa0989490:intron 30.0%
AGCGAGACATGTATAAATAA+TGG + chr6_4:46419749-46419768 Msa0989490:intron 30.0%
GAGACATGTATAAATAATGG+AGG + chr6_4:46419752-46419771 Msa0989490:intron 30.0%
! ATGTATAAATAATGGAGGCA+TGG + chr6_4:46419757-46419776 Msa0989490:intron 30.0%
! TGTATAAATAATGGAGGCAT+GGG + chr6_4:46419758-46419777 Msa0989490:intron 30.0%
CAGAGTTAGATATTTGCAAT+CGG + chr6_4:46419986-46420005 Msa0989490:intron 30.0%
CTAGAGGAGACTAATTAATT+AGG - chr6_4:46420157-46420176 None:intergenic 30.0%
CAGACAACATTATAAAAAGC+TGG - chr6_4:46420341-46420360 None:intergenic 30.0%
AACAAGAGAGTAAGAAACAA+GGG - chr6_4:46420433-46420452 None:intergenic 30.0%
TAACAAGAGAGTAAGAAACA+AGG - chr6_4:46420434-46420453 None:intergenic 30.0%
! TTGTTTCTTACTCTCTTGTT+AGG + chr6_4:46420433-46420452 Msa0989490:intron 30.0%
TGTTTCTTACTCTCTTGTTA+GGG + chr6_4:46420434-46420453 Msa0989490:intron 30.0%
!!! TTAGTGTTGTTTTTGATGAC+CGG + chr6_4:46420746-46420765 Msa0989490:intron 30.0%
ACAACATGATATATTGCCAA+AGG - chr6_4:46420803-46420822 None:intergenic 30.0%
! TTTTATGTTAATTTCCAGCC+GGG + chr6_4:46420865-46420884 Msa0989490:intron 30.0%
! CGGAATAAATCTATCAGTTT+TGG - chr6_4:46420993-46421012 None:intergenic 30.0%
AATATGTAACATCAATGGAG+CGG - chr6_4:46421013-46421032 None:intergenic 30.0%
GAGTACATTATATCTGATAG+AGG - chr6_4:46421324-46421343 None:intergenic 30.0%
AATGTTGGGGGAAATAAAAT+TGG + chr6_4:46421538-46421557 Msa0989490:intron 30.0%
! ATATGTGTTGATGCTTTATG+TGG + chr6_4:46421754-46421773 Msa0989490:intron 30.0%
CTTAATTAGGTCATCTATCA+GGG - chr6_4:46421966-46421985 None:intergenic 30.0%
!!! ACGATTGTTTTTGTGTAAGT+TGG + chr6_4:46422056-46422075 Msa0989490:intron 30.0%
AATATGCCAAAAGTAGATCA+TGG + chr6_4:46422107-46422126 Msa0989490:intron 30.0%
! TACTAGTTTAAGGGTGTATT+TGG - chr6_4:46422226-46422245 None:intergenic 30.0%
TGTTCATATGTATCCTCATA+AGG - chr6_4:46422392-46422411 None:intergenic 30.0%
GAAGATAATCGTATAACTGA+TGG + chr6_4:46422560-46422579 Msa0989490:CDS 30.0%
ATGTAAACCATGTCTAGTAA+TGG - chr6_4:46422885-46422904 None:intergenic 30.0%
!!! AAAAGAGCCTTTTTTCCATT+AGG - chr6_4:46422932-46422951 None:intergenic 30.0%
! AATGGAAAAAAGGCTCTTTT+TGG + chr6_4:46422932-46422951 Msa0989490:intron 30.0%
! TGTTATCACCAGAATTTGTT+GGG - chr6_4:46423201-46423220 None:intergenic 30.0%
TTGTTATCACCAGAATTTGT+TGG - chr6_4:46423202-46423221 None:intergenic 30.0%
CAAATTCTGGTGATAACAAT+TGG + chr6_4:46423203-46423222 Msa0989490:CDS 30.0%
! CTGAGTGATATTTCTATGAA+AGG - chr6_4:46423754-46423773 None:intergenic 30.0%
ATTTCTCAAAGGTTGTCAAT+GGG + chr6_4:46423832-46423851 Msa0989490:CDS 30.0%
TAAGAAAATGTATCATGCTG+TGG - chr6_4:46424199-46424218 None:intergenic 30.0%
! AATGGATTTGTAGATTGTGA+TGG - chr6_4:46424266-46424285 None:intergenic 30.0%
ATTGAAATTACTTACGGTTG+GGG - chr6_4:46424321-46424340 None:intergenic 30.0%
TCACAAAACCTATGTAAAAG+AGG - chr6_4:46424390-46424409 None:intergenic 30.0%
!! TAATAAGAATGATGGGTAAC+TGG + chr6_4:46424619-46424638 Msa0989490:intron 30.0%
ATTGCCTGTCAATTTATGTT+AGG + chr6_4:46424767-46424786 Msa0989490:intron 30.0%
! TTTGGTTGATGCTTTATGAT+TGG + chr6_4:46424841-46424860 Msa0989490:intron 30.0%
ATTGATTACCCATGTTTGAA+GGG - chr6_4:46424945-46424964 None:intergenic 30.0%
TTGATTGGGGAAATGATAAA+AGG - chr6_4:46425060-46425079 None:intergenic 30.0%
ATAAACCGTGTAAAATCTCA+GGG + chr6_4:46425118-46425137 Msa0989490:intron 30.0%
!!! AATTTTTTGCTCTTGGAAAG+TGG + chr6_4:46425242-46425261 Msa0989490:intron 30.0%
!! GAGTTGATAATTATTGGTTG+TGG + chr6_4:46425474-46425493 Msa0989490:intron 30.0%
AATATAGATCAGCAACTGAA+TGG + chr6_4:46425587-46425606 Msa0989490:CDS 30.0%
AAATCTTAAGATCATCCGAA+TGG - chr6_4:46425662-46425681 None:intergenic 30.0%
! TGATCTTAAGATTTTCTGCT+CGG + chr6_4:46425668-46425687 Msa0989490:exon 30.0%
ACTTCAACCATATTTGTACA+GGG - chr6_4:46425728-46425747 None:intergenic 30.0%
AACTTCAACCATATTTGTAC+AGG - chr6_4:46425729-46425748 None:intergenic 30.0%
TGTTGTTATAGGAAAGATGA+AGG + chr6_4:46425836-46425855 Msa0989490:three_prime_UTR 30.0%
AGATGCTTAATAGTGTGTTA+TGG + chr6_4:46425989-46426008 Msa0989490:three_prime_UTR 30.0%
! GTAAAGGTCTTTTCTATTCA+TGG + chr6_4:46426097-46426116 Msa0989490:three_prime_UTR 30.0%
ATAGTGGTATAGAACTCAAT+CGG - chr6_4:46426151-46426170 None:intergenic 30.0%
ATTGAGTTCTATACCACTAT+AGG + chr6_4:46426151-46426170 Msa0989490:three_prime_UTR 30.0%
TGAAGAAAAAGGGAAGAAAG+GGG - chr6_4:46417946-46417965 None:intergenic 35.0%
GTGAAGAAAAAGGGAAGAAA+GGG - chr6_4:46417947-46417966 None:intergenic 35.0%
AGTGAAGAAAAAGGGAAGAA+AGG - chr6_4:46417948-46417967 None:intergenic 35.0%
!! AAGTTGGTATAAAAGAGACG+TGG - chr6_4:46418172-46418191 None:intergenic 35.0%
TCAGTTAGAACCCTAAAAGT+TGG - chr6_4:46418188-46418207 None:intergenic 35.0%
! TCTTCTTCTTCTTAGTTCTC+AGG + chr6_4:46418252-46418271 Msa0989490:five_prime_UTR 35.0%
CAGATCAGCATACAAATTGA+AGG - chr6_4:46418315-46418334 None:intergenic 35.0%
ATACAATGCACCTAGATTCT+AGG - chr6_4:46418377-46418396 None:intergenic 35.0%
TAGAATCTAGGTGCATTGTA+TGG + chr6_4:46418376-46418395 Msa0989490:intron 35.0%
! CCGCTAAAATTGATTCTAAC+GGG - chr6_4:46418628-46418647 None:intergenic 35.0%
! CCCGTTAGAATCAATTTTAG+CGG + chr6_4:46418625-46418644 Msa0989490:intron 35.0%
ATTGCTTGATTGGATTGACT+TGG + chr6_4:46418807-46418826 Msa0989490:intron 35.0%
CAGTTAATGCATCTTCGATT+CGG - chr6_4:46418945-46418964 None:intergenic 35.0%
TACAAGTCACAATGATGTAG+TGG + chr6_4:46419086-46419105 Msa0989490:intron 35.0%
ATGTAGTGGTAACCATTCAA+TGG + chr6_4:46419100-46419119 Msa0989490:intron 35.0%
TGTAGTGGTAACCATTCAAT+GGG + chr6_4:46419101-46419120 Msa0989490:intron 35.0%
ATTTCTACAAAGTTCGCCTT+AGG - chr6_4:46419148-46419167 None:intergenic 35.0%
GATGTAAATTATGACCGATG+GGG + chr6_4:46419628-46419647 Msa0989490:intron 35.0%
CATGCATATGATTCTGTAGA+TGG - chr6_4:46419713-46419732 None:intergenic 35.0%
CATCTACAGAATCATATGCA+TGG + chr6_4:46419711-46419730 Msa0989490:intron 35.0%
GCTAAAAAGCAATGTAAACG+AGG - chr6_4:46419811-46419830 None:intergenic 35.0%
ACACAAGCTATACACAACTA+AGG - chr6_4:46419918-46419937 None:intergenic 35.0%
!!! TGCATTTTTTGCTATTCGAC+AGG + chr6_4:46420048-46420067 Msa0989490:intron 35.0%
GAGACTAATTAATTAGGGCA+GGG - chr6_4:46420151-46420170 None:intergenic 35.0%
TGTTATAGCAAGGAATCTAG+AGG - chr6_4:46420173-46420192 None:intergenic 35.0%
TCAAGGTTTCTGTTATAGCA+AGG - chr6_4:46420183-46420202 None:intergenic 35.0%
! GTACGCTTTGATTTAAGTGT+TGG + chr6_4:46420299-46420318 Msa0989490:intron 35.0%
TTCTGAACGTAGCTAAGAAA+TGG + chr6_4:46420370-46420389 Msa0989490:intron 35.0%
ACAAGAGAGTAAGAAACAAG+GGG - chr6_4:46420432-46420451 None:intergenic 35.0%
GGCAATATATCATGTTGTAC+TGG + chr6_4:46420805-46420824 Msa0989490:intron 35.0%
TATCATGTTGTACTGGAGAT+AGG + chr6_4:46420812-46420831 Msa0989490:intron 35.0%
TTACTCGATGAGTAAATTCC+CGG - chr6_4:46420886-46420905 None:intergenic 35.0%
TCGAGTAAAATCAATCTCCA+TGG + chr6_4:46420898-46420917 Msa0989490:CDS 35.0%
TTGTGCAGTAAATTTAGCCA+TGG - chr6_4:46420918-46420937 None:intergenic 35.0%
!! GTTTTGGCACATATACGAAT+TGG - chr6_4:46420977-46420996 None:intergenic 35.0%
ACTCATTCTTTACCTGATAG+CGG + chr6_4:46421109-46421128 Msa0989490:CDS 35.0%
CTTTATCAAGCGTGTTTATG+TGG + chr6_4:46421229-46421248 Msa0989490:CDS 35.0%
TTTACAACCTTTACTCTTGG+AGG - chr6_4:46421290-46421309 None:intergenic 35.0%
CACTTTACAACCTTTACTCT+TGG - chr6_4:46421293-46421312 None:intergenic 35.0%
ACACATATTGCACAACACAT+TGG - chr6_4:46421742-46421761 None:intergenic 35.0%
TGTTGATGCTTTATGTGGAT+TGG + chr6_4:46421759-46421778 Msa0989490:intron 35.0%
GTTGATGCTTTATGTGGATT+GGG + chr6_4:46421760-46421779 Msa0989490:intron 35.0%
TTTCTTAACTATTTCCCCAC+AGG - chr6_4:46421801-46421820 None:intergenic 35.0%
GCTTAATTAGGTCATCTATC+AGG - chr6_4:46421967-46421986 None:intergenic 35.0%
! ACATGTCCATGATCTACTTT+TGG - chr6_4:46422116-46422135 None:intergenic 35.0%
AGTCACTTGTATGAGTGTTT+GGG - chr6_4:46422162-46422181 None:intergenic 35.0%
TAGTCACTTGTATGAGTGTT+TGG - chr6_4:46422163-46422182 None:intergenic 35.0%
! CCAAGTGTGTACTAGTTTAA+GGG - chr6_4:46422235-46422254 None:intergenic 35.0%
!! ACCAAAAAGCATTCCTTATG+AGG + chr6_4:46422376-46422395 Msa0989490:CDS 35.0%
! TCCTCATAAGGAATGCTTTT+TGG - chr6_4:46422380-46422399 None:intergenic 35.0%
AACTAGACCTATCACTGAAA+CGG - chr6_4:46422415-46422434 None:intergenic 35.0%
TGTCTTTCTTGATCATATCC+AGG - chr6_4:46422452-46422471 None:intergenic 35.0%
CATCTCCAAATCTATCTTCA+CGG - chr6_4:46422529-46422548 None:intergenic 35.0%
AAGATAGATTTGGAGATGGA+CGG + chr6_4:46422531-46422550 Msa0989490:CDS 35.0%
GATAATCGTATAACTGATGG+AGG + chr6_4:46422563-46422582 Msa0989490:CDS 35.0%
!! AACTGATGGAGGTATTAAGA+TGG + chr6_4:46422574-46422593 Msa0989490:CDS 35.0%
TCTCCCAAAATTTCTCTAAC+AGG - chr6_4:46422662-46422681 None:intergenic 35.0%
AATGTGGCTCAGTATTTACT+TGG + chr6_4:46422789-46422808 Msa0989490:intron 35.0%
TTCCTTTCCATTACTAGACA+TGG + chr6_4:46422875-46422894 Msa0989490:intron 35.0%
! AACCATGTCTAGTAATGGAA+AGG - chr6_4:46422880-46422899 None:intergenic 35.0%
TCTGCAATCATAGTAGTCAA+AGG - chr6_4:46423018-46423037 None:intergenic 35.0%
ACTACTATGATTGCAGAGAA+CGG + chr6_4:46423021-46423040 Msa0989490:intron 35.0%
AAGTTAAGCTTGAGACTATC+AGG + chr6_4:46423086-46423105 Msa0989490:CDS 35.0%
ATTGTGAACCCAACAAATTC+TGG + chr6_4:46423190-46423209 Msa0989490:CDS 35.0%
! CGAGTGGATTTACATTTGAA+AGG - chr6_4:46423270-46423289 None:intergenic 35.0%
ACTTGATCAGGTAAAGATGA+TGG - chr6_4:46423319-46423338 None:intergenic 35.0%
TCTTTACCTGATCAAGTTTC+TGG + chr6_4:46423322-46423341 Msa0989490:CDS 35.0%
AATGTTACGATACTGCTCAA+AGG - chr6_4:46423382-46423401 None:intergenic 35.0%
TGCAGGTGAAACAGATAAAA+AGG - chr6_4:46423420-46423439 None:intergenic 35.0%
! TTTTTATCTGTTTCACCTGC+AGG + chr6_4:46423419-46423438 Msa0989490:intron 35.0%
! TTTTATCTGTTTCACCTGCA+GGG + chr6_4:46423420-46423439 Msa0989490:intron 35.0%
GGTGTAGATTGTTGAATAGT+AGG - chr6_4:46423638-46423657 None:intergenic 35.0%
! TTGACAACCTTTGAGAAATG+TGG - chr6_4:46423831-46423850 None:intergenic 35.0%
CATTTCTCAAAGGTTGTCAA+TGG + chr6_4:46423831-46423850 Msa0989490:CDS 35.0%
TTTCTCAAAGGTTGTCAATG+GGG + chr6_4:46423833-46423852 Msa0989490:CDS 35.0%
TAAGAAGTCGATAATACCTC+AGG - chr6_4:46423924-46423943 None:intergenic 35.0%
AAAGCGGTAAGCTAATGATT+TGG - chr6_4:46424147-46424166 None:intergenic 35.0%
! CCACGGATTAAGTTATAAAG+CGG - chr6_4:46424163-46424182 None:intergenic 35.0%
TTTGTAGATTGTGATGGTTG+TGG - chr6_4:46424260-46424279 None:intergenic 35.0%
! GCACATTTCCTCTTTTACAT+AGG + chr6_4:46424379-46424398 Msa0989490:intron 35.0%
!! ATTACTATCGGTTGGTGATT+TGG + chr6_4:46424432-46424451 Msa0989490:intron 35.0%
! CTTTCAGTTAATGCACGTTT+TGG + chr6_4:46424823-46424842 Msa0989490:intron 35.0%
ATAGAAGGAAACTGCATTCA+AGG - chr6_4:46424871-46424890 None:intergenic 35.0%
GATTGATTACCCATGTTTGA+AGG - chr6_4:46424946-46424965 None:intergenic 35.0%
CATAAACCGTGTAAAATCTC+AGG + chr6_4:46425117-46425136 Msa0989490:intron 35.0%
TAAACCGTGTAAAATCTCAG+GGG + chr6_4:46425119-46425138 Msa0989490:intron 35.0%
TGAAATAGTTACCTTGGCAT+TGG - chr6_4:46425177-46425196 None:intergenic 35.0%
! ATGGACTGAAATAGTTACCT+TGG - chr6_4:46425183-46425202 None:intergenic 35.0%
!!! AATTGGGACTTTTGGTAATG+AGG + chr6_4:46425544-46425563 Msa0989490:CDS 35.0%
!!! ATTGGGACTTTTGGTAATGA+GGG + chr6_4:46425545-46425564 Msa0989490:CDS 35.0%
CCTAAAACAATTACTCGTCT+AGG - chr6_4:46425947-46425966 None:intergenic 35.0%
! CCTAGACGAGTAATTGTTTT+AGG + chr6_4:46425944-46425963 Msa0989490:three_prime_UTR 35.0%
ATAGTGTGTTATGGTGATCA+TGG + chr6_4:46425998-46426017 Msa0989490:three_prime_UTR 35.0%
TAGTGGTATAGAACTCAATC+GGG - chr6_4:46426150-46426169 None:intergenic 35.0%
AAGAAAAAGGGAAGAAAGGG+GGG - chr6_4:46417944-46417963 None:intergenic 40.0%
GAAGAAAAAGGGAAGAAAGG+GGG - chr6_4:46417945-46417964 None:intergenic 40.0%
AGAGAGAGATCTTTCTGAGT+TGG - chr6_4:46418020-46418039 None:intergenic 40.0%
ATGCATTAACTGCAACAGCA+TGG + chr6_4:46418953-46418972 Msa0989490:CDS 40.0%
ATTTCACTTGCTTGAAGAGC+AGG - chr6_4:46418991-46419010 None:intergenic 40.0%
TAGAGAACTTAAGAGGCCTA+AGG + chr6_4:46419129-46419148 Msa0989490:intron 40.0%
! AAGGGGCTGTTATTTGTCAA+CGG + chr6_4:46419227-46419246 Msa0989490:intron 40.0%
ACAAGCTTACGTCAGTAAAG+TGG + chr6_4:46419582-46419601 Msa0989490:intron 40.0%
CAAGCTTACGTCAGTAAAGT+GGG + chr6_4:46419583-46419602 Msa0989490:intron 40.0%
TAAATTATGACCGATGGGGA+GGG + chr6_4:46419632-46419651 Msa0989490:intron 40.0%
! ATAAATAATGGAGGCATGGG+TGG + chr6_4:46419761-46419780 Msa0989490:intron 40.0%
GGGAACTGCTATAATCTCTT+TGG - chr6_4:46420131-46420150 None:intergenic 40.0%
GGAGACTAATTAATTAGGGC+AGG - chr6_4:46420152-46420171 None:intergenic 40.0%
CAAGAGAGTAAGAAACAAGG+GGG - chr6_4:46420431-46420450 None:intergenic 40.0%
TTTGTTTGCACAAACTGCAG+TGG + chr6_4:46420488-46420507 Msa0989490:CDS 40.0%
GTACTGTTGTCGAAATGTTG+AGG + chr6_4:46420549-46420568 Msa0989490:intron 40.0%
GAAGTTAGTGCACTTCAAGA+AGG + chr6_4:46420938-46420957 Msa0989490:CDS 40.0%
ACTTCAAGAAGGAGGAAATC+AGG + chr6_4:46420949-46420968 Msa0989490:CDS 40.0%
CTCATTCTTTACCTGATAGC+GGG + chr6_4:46421110-46421129 Msa0989490:CDS 40.0%
ACAAATACTTACCCGCTATC+AGG - chr6_4:46421124-46421143 None:intergenic 40.0%
TCAAGCGTGTTTATGTGGAT+AGG + chr6_4:46421234-46421253 Msa0989490:CDS 40.0%
TATGTGGATAGGAGATTCAC+TGG + chr6_4:46421245-46421264 Msa0989490:CDS 40.0%
TACTCTTGGAGGTTTGTCAT+AGG - chr6_4:46421279-46421298 None:intergenic 40.0%
TGACAAACCTCCAAGAGTAA+AGG + chr6_4:46421280-46421299 Msa0989490:CDS 40.0%
GGGGGAAATAAAATTGGTAC+TGG + chr6_4:46421544-46421563 Msa0989490:intron 40.0%
CTCATACAAGTGACTATGCT+TGG + chr6_4:46422167-46422186 Msa0989490:intron 40.0%
CCCTTAAACTAGTACACACT+TGG + chr6_4:46422232-46422251 Msa0989490:intron 40.0%
! GCCAAGTGTGTACTAGTTTA+AGG - chr6_4:46422236-46422255 None:intergenic 40.0%
ATGAACACCGTTTCAGTGAT+AGG + chr6_4:46422405-46422424 Msa0989490:CDS 40.0%
! TTCAGTGATAGGTCTAGTTC+AGG + chr6_4:46422416-46422435 Msa0989490:CDS 40.0%
! AGTCATTGATTATTGGAGGG+CGG - chr6_4:46422502-46422521 None:intergenic 40.0%
! GCCAGTCATTGATTATTGGA+GGG - chr6_4:46422505-46422524 None:intergenic 40.0%
CGTGAAGATAGATTTGGAGA+TGG + chr6_4:46422527-46422546 Msa0989490:CDS 40.0%
CCAAAATTTCTCTAACAGGC+CGG - chr6_4:46422658-46422677 None:intergenic 40.0%
! CGGCCTGTTAGAGAAATTTT+GGG + chr6_4:46422656-46422675 Msa0989490:CDS 40.0%
!!! CTTTTTTCCATTAGGTGGGT+GGG - chr6_4:46422924-46422943 None:intergenic 40.0%
!!! GAGCCTTTTTTCCATTAGGT+GGG - chr6_4:46422928-46422947 None:intergenic 40.0%
!!! AGAGCCTTTTTTCCATTAGG+TGG - chr6_4:46422929-46422948 None:intergenic 40.0%
!!! AAGGCTCTTTTTGGTTGTTG+CGG + chr6_4:46422941-46422960 Msa0989490:intron 40.0%
TTCTGATGAGGTTCCATTAC+TGG - chr6_4:46423068-46423087 None:intergenic 40.0%
CTCAAGCTTAACTTCTGATG+AGG - chr6_4:46423080-46423099 None:intergenic 40.0%
TGAGGAATTACTGGAGCAAT+AGG - chr6_4:46423145-46423164 None:intergenic 40.0%
!! ACCTGAGGTAAAAGTATCTC+AGG + chr6_4:46423243-46423262 Msa0989490:CDS 40.0%
!! CCTGAGGTAAAAGTATCTCA+GGG + chr6_4:46423244-46423263 Msa0989490:CDS 40.0%
!! AGATGATGGAACTGACAACT+GGG - chr6_4:46423305-46423324 None:intergenic 40.0%
!! AAGATGATGGAACTGACAAC+TGG - chr6_4:46423306-46423325 None:intergenic 40.0%
CTAATGAAGCAACACTGGAT+GGG - chr6_4:46423511-46423530 None:intergenic 40.0%
AGATGCTAATGAAGCAACAC+TGG - chr6_4:46423516-46423535 None:intergenic 40.0%
GTTGCTTCATTAGCATCTTC+TGG + chr6_4:46423518-46423537 Msa0989490:CDS 40.0%
AGCATCTTCTGGATTGACAA+TGG + chr6_4:46423529-46423548 Msa0989490:CDS 40.0%
! CATGGGAGTGCATTATTGAA+AGG - chr6_4:46423560-46423579 None:intergenic 40.0%
CTTTCAATAATGCACTCCCA+TGG + chr6_4:46423558-46423577 Msa0989490:CDS 40.0%
GATACTGCAAATTAGGCCAT+GGG - chr6_4:46423577-46423596 None:intergenic 40.0%
TGATACTGCAAATTAGGCCA+TGG - chr6_4:46423578-46423597 None:intergenic 40.0%
TGCTGCTGATACTGCAAATT+AGG - chr6_4:46423584-46423603 None:intergenic 40.0%
TTATTCAAAGCTCCACCTAC+TGG - chr6_4:46423662-46423681 None:intergenic 40.0%
GCGTCTTAATAAGACAAACC+TGG - chr6_4:46423685-46423704 None:intergenic 40.0%
GGGAACAGAAGATGTATTAC+AGG - chr6_4:46423778-46423797 None:intergenic 40.0%
GTGTCTACAGTAGAAGTTTG+TGG - chr6_4:46423876-46423895 None:intergenic 40.0%
ACTGTAGACACAAAACCAAG+TGG + chr6_4:46423885-46423904 Msa0989490:CDS 40.0%
GGAAGTTCATTTCTTCCACT+TGG - chr6_4:46423903-46423922 None:intergenic 40.0%
TGGAAGAAATGAACTTCCTG+AGG + chr6_4:46423905-46423924 Msa0989490:CDS 40.0%
CCGCTTTATAACTTAATCCG+TGG + chr6_4:46424160-46424179 Msa0989490:intron 40.0%
TGTGATGGTTGTGGAAAACT+CGG - chr6_4:46424251-46424270 None:intergenic 40.0%
GGTTCGTTGATCACATCAAA+TGG - chr6_4:46424284-46424303 None:intergenic 40.0%
AATGTGCACAAACTATCACC+AGG - chr6_4:46424366-46424385 None:intergenic 40.0%
CTAAAGCACATCATGCACTT+TGG - chr6_4:46424463-46424482 None:intergenic 40.0%
!! ATGATGTGCTTTAGAGCCAT+TGG + chr6_4:46424469-46424488 Msa0989490:intron 40.0%
GATGGGTAACTGGTATATGA+TGG + chr6_4:46424629-46424648 Msa0989490:intron 40.0%
TCATCTGACATTGAAAAGGC+TGG + chr6_4:46424674-46424693 Msa0989490:intron 40.0%
AAAGGCTGGAATGTTGAAGT+AGG + chr6_4:46424688-46424707 Msa0989490:intron 40.0%
CCTTGCAAAGATGACATAGA+AGG - chr6_4:46424886-46424905 None:intergenic 40.0%
CCTTCTATGTCATCTTTGCA+AGG + chr6_4:46424883-46424902 Msa0989490:CDS 40.0%
TGCAGTAAACCCTTCAAACA+TGG + chr6_4:46424933-46424952 Msa0989490:CDS 40.0%
GCAGTAAACCCTTCAAACAT+GGG + chr6_4:46424934-46424953 Msa0989490:CDS 40.0%
TGGGTAATCAATCTCTTTCC+TGG + chr6_4:46424953-46424972 Msa0989490:CDS 40.0%
CATGAATATGTGCTTGTGGA+GGG - chr6_4:46425014-46425033 None:intergenic 40.0%
ACATATTCATGCCTCAGCAA+TGG + chr6_4:46425023-46425042 Msa0989490:CDS 40.0%
CATATTCATGCCTCAGCAAT+GGG + chr6_4:46425024-46425043 Msa0989490:CDS 40.0%
! ATTCAGTGTTGTTGCTTGAG+TGG + chr6_4:46425372-46425391 Msa0989490:intron 40.0%
! TTCAGTGTTGTTGCTTGAGT+GGG + chr6_4:46425373-46425392 Msa0989490:intron 40.0%
ACACATTCAGTTACGTGTCA+AGG - chr6_4:46425513-46425532 None:intergenic 40.0%
TGACACGTAACTGAATGTGT+AGG + chr6_4:46425513-46425532 Msa0989490:intron 40.0%
AACTGAATGTGTAGGCATCA+AGG + chr6_4:46425521-46425540 Msa0989490:intron 40.0%
ATGTGTAGGCATCAAGGAAT+TGG + chr6_4:46425527-46425546 Msa0989490:intron 40.0%
TGTGTAGGCATCAAGGAATT+GGG + chr6_4:46425528-46425547 Msa0989490:intron 40.0%
! CATCAAGGAATTGGGACTTT+TGG + chr6_4:46425536-46425555 Msa0989490:CDS 40.0%
TAGATCAGCAACTGAATGGT+AGG + chr6_4:46425591-46425610 Msa0989490:CDS 40.0%
TGTTGCACCCTGTACAAATA+TGG + chr6_4:46425718-46425737 Msa0989490:three_prime_UTR 40.0%
TGTACCATTCTTTAGTCGAG+AGG + chr6_4:46425752-46425771 Msa0989490:three_prime_UTR 40.0%
GTTTCCTCTCGACTAAAGAA+TGG - chr6_4:46425759-46425778 None:intergenic 40.0%
AAACACTCCAGCATAGAGAT+CGG + chr6_4:46425775-46425794 Msa0989490:three_prime_UTR 40.0%
CCAAATATCTGCCTGTCAAT+GGG + chr6_4:46425859-46425878 Msa0989490:three_prime_UTR 40.0%
TGAGCTGATGAATTCGAGAA+AGG + chr6_4:46425903-46425922 Msa0989490:three_prime_UTR 40.0%
AATTACTCGTCTAGGCGAAA+GGG - chr6_4:46425939-46425958 None:intergenic 40.0%
GCTTTGTACAGCTGAGAATG+AGG - chr6_4:46417987-46418006 None:intergenic 45.0%
AAAGATCTCTCTCTCTTCCC+TGG + chr6_4:46418026-46418045 Msa0989490:five_prime_UTR 45.0%
GGAGATGACAAGTCGACTAA+AGG + chr6_4:46418872-46418891 Msa0989490:exon 45.0%
GGCCTCTTAAGTTCTCTACA+CGG - chr6_4:46419127-46419146 None:intergenic 45.0%
GTAAATTATGACCGATGGGG+AGG + chr6_4:46419631-46419650 Msa0989490:intron 45.0%
TGTCTCGCTAAGTTGTCCAT+GGG - chr6_4:46419738-46419757 None:intergenic 45.0%
ATGTCTCGCTAAGTTGTCCA+TGG - chr6_4:46419739-46419758 None:intergenic 45.0%
! ATTTGCAATCGGTTCAAGCG+AGG + chr6_4:46419997-46420016 Msa0989490:intron 45.0%
GTTAGTGCACTTCAAGAAGG+AGG + chr6_4:46420941-46420960 Msa0989490:CDS 45.0%
!! TTGGTGCCAGTAATGTTGAC+AGG + chr6_4:46421198-46421217 Msa0989490:intron 45.0%
CCAGTAATGTTGACAGGCTT+CGG + chr6_4:46421204-46421223 Msa0989490:intron 45.0%
CAGTAATGTTGACAGGCTTC+GGG + chr6_4:46421205-46421224 Msa0989490:intron 45.0%
GTGTGTATGTCGTGAGTGTA+AGG + chr6_4:46421439-46421458 Msa0989490:intron 45.0%
ATGGCTACCACAACACAGTA+GGG - chr6_4:46421664-46421683 None:intergenic 45.0%
TCATGCTAACTAGTGCCTGT+GGG + chr6_4:46421783-46421802 Msa0989490:intron 45.0%
TTTCCTTAACTAGTGCCCCA+GGG + chr6_4:46421924-46421943 Msa0989490:intron 45.0%
TCTTGTGCTGCATCTCATAC+AGG + chr6_4:46422301-46422320 Msa0989490:intron 45.0%
CTTGTGCTGCATCTCATACA+GGG + chr6_4:46422302-46422321 Msa0989490:intron 45.0%
AGGATGATTCCTATGACACC+AGG + chr6_4:46422330-46422349 Msa0989490:CDS 45.0%
TTCCTATGACACCAGGAAGA+CGG + chr6_4:46422337-46422356 Msa0989490:CDS 45.0%
! AGTGATAGGTCTAGTTCAGG+TGG + chr6_4:46422419-46422438 Msa0989490:CDS 45.0%
GCCCTCCAATAATCAATGAC+TGG + chr6_4:46422501-46422520 Msa0989490:CDS 45.0%
! CGCCAGTCATTGATTATTGG+AGG - chr6_4:46422506-46422525 None:intergenic 45.0%
! CTTTGGCTCGTTCAAGAGAT+TGG - chr6_4:46422604-46422623 None:intergenic 45.0%
! CCGGCCTGTTAGAGAAATTT+TGG + chr6_4:46422655-46422674 Msa0989490:CDS 45.0%
TAATGGCTCAACACTCACAC+AGG + chr6_4:46422739-46422758 Msa0989490:CDS 45.0%
!!! CCTTTTTTCCATTAGGTGGG+TGG - chr6_4:46422925-46422944 None:intergenic 45.0%
CCACCCACCTAATGGAAAAA+AGG + chr6_4:46422922-46422941 Msa0989490:intron 45.0%
ATTACTGGATGCCAAGCTAC+TGG - chr6_4:46423053-46423072 None:intergenic 45.0%
AGTAGCTTGGCATCCAGTAA+TGG + chr6_4:46423052-46423071 Msa0989490:CDS 45.0%
GGAATTACTGGAGCAATAGG+TGG - chr6_4:46423142-46423161 None:intergenic 45.0%
TGTGTGGCTTGAGGAATTAC+TGG - chr6_4:46423154-46423173 None:intergenic 45.0%
TGGGTTCACAATTTGAGCCA+CGG - chr6_4:46423182-46423201 None:intergenic 45.0%
TACCTCAGGTGCAACATCAA+AGG - chr6_4:46423233-46423252 None:intergenic 45.0%
! CCCTGAGATACTTTTACCTC+AGG - chr6_4:46423247-46423266 None:intergenic 45.0%
TGGACTCCAGAAACTTGATC+AGG - chr6_4:46423331-46423350 None:intergenic 45.0%
!! GATCAAGTTTCTGGAGTCCA+AGG + chr6_4:46423331-46423350 Msa0989490:CDS 45.0%
GTTGCGAAGATGTTCACAGT+TGG - chr6_4:46423485-46423504 None:intergenic 45.0%
GCTAATGAAGCAACACTGGA+TGG - chr6_4:46423512-46423531 None:intergenic 45.0%
CCAACAGCAGATGTGAACAA+CGG - chr6_4:46423611-46423630 None:intergenic 45.0%
CAACAATCTACACCACCAGT+AGG + chr6_4:46423644-46423663 Msa0989490:CDS 45.0%
!! AGGTGGAGCTTTGAATAACC+AGG + chr6_4:46423664-46423683 Msa0989490:CDS 45.0%
GCTAGTGCCACATTTCTCAA+AGG + chr6_4:46423821-46423840 Msa0989490:CDS 45.0%
TCTTTCGCTGTGATTTCTGC+AGG + chr6_4:46424005-46424024 Msa0989490:intron 45.0%
AATGTATCATGCTGTGGCAC+TGG - chr6_4:46424193-46424212 None:intergenic 45.0%
! TCGGCATGGACTGTAACAAT+GGG - chr6_4:46424232-46424251 None:intergenic 45.0%
!! ATGTGCTTTAGAGCCATTGG+TGG + chr6_4:46424472-46424491 Msa0989490:intron 45.0%
! GGTGCATATGATAACGAGGA+GGG - chr6_4:46424985-46425004 None:intergenic 45.0%
! TGGTGCATATGATAACGAGG+AGG - chr6_4:46424986-46425005 None:intergenic 45.0%
! CGTTGGTGCATATGATAACG+AGG - chr6_4:46424989-46425008 None:intergenic 45.0%
GCATGAATATGTGCTTGTGG+AGG - chr6_4:46425015-46425034 None:intergenic 45.0%
GAGGCATGAATATGTGCTTG+TGG - chr6_4:46425018-46425037 None:intergenic 45.0%
TATACTTGGTCCCATTGCTG+AGG - chr6_4:46425037-46425056 None:intergenic 45.0%
! TACGCCCCTGAGATTTTACA+CGG - chr6_4:46425126-46425145 None:intergenic 45.0%
! TAAAATCTCAGGGGCGTACA+TGG + chr6_4:46425128-46425147 Msa0989490:intron 45.0%
!! CTTGGCATTGGCACATTAGT+GGG - chr6_4:46425165-46425184 None:intergenic 45.0%
! GAAGGGGTTTAAAGTAGCAG+AGG - chr6_4:46425624-46425643 None:intergenic 45.0%
GGGTGCAACAAATTGATGCT+TGG - chr6_4:46425708-46425727 None:intergenic 45.0%
ATGATGACCGATCTCTATGC+TGG - chr6_4:46425785-46425804 None:intergenic 45.0%
GCCAAATATCTGCCTGTCAA+TGG + chr6_4:46425858-46425877 Msa0989490:three_prime_UTR 45.0%
CCCATTGACAGGCAGATATT+TGG - chr6_4:46425862-46425881 None:intergenic 45.0%
CAATTACTCGTCTAGGCGAA+AGG - chr6_4:46425940-46425959 None:intergenic 45.0%
!!! TTTACATTAAATTTTATTAT+TGG + chr6_4:46421605-46421624 Msa0989490:intron 5.0%
!!! AGATTTTATTTTTTATTTTT+TGG + chr6_4:46421693-46421712 Msa0989490:intron 5.0%
AAGGGAAGAAAGGGGGGTAA+AGG - chr6_4:46417938-46417957 None:intergenic 50.0%
ACAGCACAGCACAACAACCA+GGG - chr6_4:46418046-46418065 None:intergenic 50.0%
GTTTAAGCTGCTGACGGTGA+TGG - chr6_4:46418091-46418110 None:intergenic 50.0%
TCTCTACACGGCCCATTGAA+TGG - chr6_4:46419115-46419134 None:intergenic 50.0%
GGCCGTGTAGAGAACTTAAG+AGG + chr6_4:46419122-46419141 Msa0989490:intron 50.0%
! GGGCTGTTATTTGTCAACGG+TGG + chr6_4:46419230-46419249 Msa0989490:intron 50.0%
! ACCAAAGTATCCCTCCCCAT+CGG - chr6_4:46419645-46419664 None:intergenic 50.0%
GAATCATATGCATGGGCCCA+TGG + chr6_4:46419719-46419738 Msa0989490:intron 50.0%
! ATAATGGAGGCATGGGTGGT+TGG + chr6_4:46419765-46419784 Msa0989490:intron 50.0%
GTAAACGAGGCTGTTGCCTT+AGG - chr6_4:46419798-46419817 None:intergenic 50.0%
TCGATGAGTAAATTCCCGGC+TGG - chr6_4:46420882-46420901 None:intergenic 50.0%
CCGAAGCCTGTCAACATTAC+TGG - chr6_4:46421207-46421226 None:intergenic 50.0%
ATAGGAGATTCACTGGCGAC+AGG + chr6_4:46421252-46421271 Msa0989490:CDS 50.0%
CATGGCTACCACAACACAGT+AGG - chr6_4:46421665-46421684 None:intergenic 50.0%
CTGTGTTGTGGTAGCCATGT+TGG + chr6_4:46421666-46421685 Msa0989490:intron 50.0%
GTCATGCTAACTAGTGCCTG+TGG + chr6_4:46421782-46421801 Msa0989490:intron 50.0%
CATGCTAACTAGTGCCTGTG+GGG + chr6_4:46421784-46421803 Msa0989490:intron 50.0%
GTTTCCTTAACTAGTGCCCC+AGG + chr6_4:46421923-46421942 Msa0989490:intron 50.0%
TTCCTTAACTAGTGCCCCAG+GGG + chr6_4:46421925-46421944 Msa0989490:intron 50.0%
AAATGCTAACCAGTGCCCCT+GGG - chr6_4:46421943-46421962 None:intergenic 50.0%
AGGAAGACGGAGTCGTATCA+GGG + chr6_4:46422350-46422369 Msa0989490:CDS 50.0%
AGTTCAGGTGGAAGAAGTCC+TGG + chr6_4:46422431-46422450 Msa0989490:CDS 50.0%
GCCAGGGCTTCTCTTATGAT+CGG - chr6_4:46422480-46422499 None:intergenic 50.0%
! CGGCGCCAGTCATTGATTAT+TGG - chr6_4:46422509-46422528 None:intergenic 50.0%
TGGCGCCGTGAAGATAGATT+TGG + chr6_4:46422521-46422540 Msa0989490:CDS 50.0%
TCTTGAACGAGCCAAAGACC+TGG + chr6_4:46422607-46422626 Msa0989490:CDS 50.0%
CTTGAACGAGCCAAAGACCT+GGG + chr6_4:46422608-46422627 Msa0989490:CDS 50.0%
GCTCAAAGAACCCAGGTCTT+TGG - chr6_4:46422621-46422640 None:intergenic 50.0%
GGAGGTTCACTAATTCGCAG+AGG - chr6_4:46422695-46422714 None:intergenic 50.0%
GAACCTCCCAAAGCAAACAG+TGG + chr6_4:46422707-46422726 Msa0989490:CDS 50.0%
! TGTCCACTGTTTGCTTTGGG+AGG - chr6_4:46422713-46422732 None:intergenic 50.0%
TCCCAAAGCAAACAGTGGAC+AGG + chr6_4:46422712-46422731 Msa0989490:CDS 50.0%
GCCTGTCCACTGTTTGCTTT+GGG - chr6_4:46422716-46422735 None:intergenic 50.0%
AGCCTGTCCACTGTTTGCTT+TGG - chr6_4:46422717-46422736 None:intergenic 50.0%
AACAGTGGACAGGCTGCTAA+TGG + chr6_4:46422722-46422741 Msa0989490:CDS 50.0%
ATGGTATCCCACCCACCTAA+TGG + chr6_4:46422914-46422933 Msa0989490:intron 50.0%
AACGGCATCTTCCAGTAGCT+TGG + chr6_4:46423039-46423058 Msa0989490:CDS 50.0%
ACTGGAGCAATAGGTGGTTC+AGG - chr6_4:46423136-46423155 None:intergenic 50.0%
! ACGGTAGTTTGTGTGGCTTG+AGG - chr6_4:46423163-46423182 None:intergenic 50.0%
TCAAGCCACACAAACTACCG+TGG + chr6_4:46423162-46423181 Msa0989490:CDS 50.0%
! TTGAGCCACGGTAGTTTGTG+TGG - chr6_4:46423170-46423189 None:intergenic 50.0%
CTCAGGTGCAACATCAAAGG+AGG - chr6_4:46423230-46423249 None:intergenic 50.0%
CTCCTTTGATGTTGCACCTG+AGG + chr6_4:46423228-46423247 Msa0989490:CDS 50.0%
!! CAAGTTTCTGGAGTCCAAGG+TGG + chr6_4:46423334-46423353 Msa0989490:intron 50.0%
TCAGCTCTTACTGCTACTGC+CGG + chr6_4:46423455-46423474 Msa0989490:CDS 50.0%
GATGTTCACAGTTGGAGCTC+CGG - chr6_4:46423477-46423496 None:intergenic 50.0%
CCGTTGTTCACATCTGCTGT+TGG + chr6_4:46423608-46423627 Msa0989490:CDS 50.0%
CAATCTACACCACCAGTAGG+TGG + chr6_4:46423647-46423666 Msa0989490:CDS 50.0%
TTCAAAGCTCCACCTACTGG+TGG - chr6_4:46423659-46423678 None:intergenic 50.0%
ATCTTCTGTTCCCGCGATAC+AGG + chr6_4:46423785-46423804 Msa0989490:intron 50.0%
TCTTCTGTTCCCGCGATACA+GGG + chr6_4:46423786-46423805 Msa0989490:intron 50.0%
AAATGTGGCACTAGCGTGCT+TGG - chr6_4:46423816-46423835 None:intergenic 50.0%
!! GTGGCACTGGCATATAACCA+CGG - chr6_4:46424180-46424199 None:intergenic 50.0%
! CTCGGCATGGACTGTAACAA+TGG - chr6_4:46424233-46424252 None:intergenic 50.0%
TGGTTGTGGAAAACTCGGCA+TGG - chr6_4:46424246-46424265 None:intergenic 50.0%
GTACTAGTGTGTAGTACGCC+TGG + chr6_4:46424345-46424364 Msa0989490:intron 50.0%
GAAGGGTTTACTGCAGCTGA+AGG - chr6_4:46424928-46424947 None:intergenic 50.0%
! GCATATGATAACGAGGAGGG+TGG - chr6_4:46424982-46425001 None:intergenic 50.0%
!! CCTTGGCATTGGCACATTAG+TGG - chr6_4:46425166-46425185 None:intergenic 50.0%
CCACTAATGTGCCAATGCCA+AGG + chr6_4:46425163-46425182 Msa0989490:CDS 50.0%
!! GGTAATGAGGGAGCTGCTTT+TGG + chr6_4:46425557-46425576 Msa0989490:CDS 50.0%
GCAACTGAATGGTAGGTCGT+CGG + chr6_4:46425598-46425617 Msa0989490:CDS 50.0%
ACTTTAAACCCCTTCCCTGC+AGG + chr6_4:46425629-46425648 Msa0989490:CDS 50.0%
!! CGAATGGATTACCTCCTGCA+GGG - chr6_4:46425646-46425665 None:intergenic 50.0%
CCTGCAGGAGGTAATCCATT+CGG + chr6_4:46425644-46425663 Msa0989490:CDS 50.0%
ACTGTACGACTCCCATTGAC+AGG - chr6_4:46425873-46425892 None:intergenic 50.0%
GCATCTGACGCTACAACACA+AGG - chr6_4:46425975-46425994 None:intergenic 50.0%
CACAGCACAGCACAACAACC+AGG - chr6_4:46418047-46418066 None:intergenic 55.0%
ACCGATGGGGAGGGATACTT+TGG + chr6_4:46419641-46419660 Msa0989490:intron 55.0%
GCAGTCACCCTACTGTGTTG+TGG + chr6_4:46421654-46421673 Msa0989490:intron 55.0%
AATGCTAACCAGTGCCCCTG+GGG - chr6_4:46421942-46421961 None:intergenic 55.0%
GAAATGCTAACCAGTGCCCC+TGG - chr6_4:46421944-46421963 None:intergenic 55.0%
GCATCTCATACAGGGCGACA+AGG + chr6_4:46422310-46422329 Msa0989490:intron 55.0%
!! CTCCGTCTTCCTGGTGTCAT+AGG - chr6_4:46422342-46422361 None:intergenic 55.0%
CTGATACGACTCCGTCTTCC+TGG - chr6_4:46422351-46422370 None:intergenic 55.0%
CAGGAAGACGGAGTCGTATC+AGG + chr6_4:46422349-46422368 Msa0989490:CDS 55.0%
AAGACGGAGTCGTATCAGGG+AGG + chr6_4:46422353-46422372 Msa0989490:CDS 55.0%
GCCGATCATAAGAGAAGCCC+TGG + chr6_4:46422476-46422495 Msa0989490:CDS 55.0%
TGATTATTGGAGGGCGGCCA+GGG - chr6_4:46422496-46422515 None:intergenic 55.0%
TTGATTATTGGAGGGCGGCC+AGG - chr6_4:46422497-46422516 None:intergenic 55.0%
TCTCTAACAGGCCGGACAAC+AGG - chr6_4:46422650-46422669 None:intergenic 55.0%
!! TGGGACAGCATCGATTCGAG+TGG - chr6_4:46423286-46423305 None:intergenic 55.0%
CTGCAAGACAGTGACCACCT+TGG - chr6_4:46423351-46423370 None:intergenic 55.0%
TGTTTCACCTGCAGGGCCTT+TGG + chr6_4:46423427-46423446 Msa0989490:intron 55.0%
GTAAGAGCTGATCCCGCCAA+AGG - chr6_4:46423446-46423465 None:intergenic 55.0%
CTTCTGTTCCCGCGATACAG+GGG + chr6_4:46423787-46423806 Msa0989490:intron 55.0%
TGAACTGAGACACCCATGCC+AGG - chr6_4:46424096-46424115 None:intergenic 55.0%
GTTGGGGCTTGAACTGGTGT+TGG - chr6_4:46424305-46424324 None:intergenic 55.0%
CTTACGGTTGGGGCTTGAAC+TGG - chr6_4:46424311-46424330 None:intergenic 55.0%
! TAACGAGGAGGGTGGATTCC+AGG - chr6_4:46424974-46424993 None:intergenic 55.0%
TTAAACCCCTTCCCTGCAGG+AGG + chr6_4:46425632-46425651 Msa0989490:CDS 55.0%
GATTACCTCCTGCAGGGAAG+GGG - chr6_4:46425640-46425659 None:intergenic 55.0%
GGATTACCTCCTGCAGGGAA+GGG - chr6_4:46425641-46425660 None:intergenic 55.0%
TGGATTACCTCCTGCAGGGA+AGG - chr6_4:46425642-46425661 None:intergenic 55.0%
!! CCGAATGGATTACCTCCTGC+AGG - chr6_4:46425647-46425666 None:intergenic 55.0%
GTTGTGCTGTGCTGTGCTGC+TGG + chr6_4:46418051-46418070 Msa0989490:five_prime_UTR 60.0%
!! GAGGCATGGGTGGTTGGCTT+GGG + chr6_4:46419771-46419790 Msa0989490:intron 60.0%
!! AGGCATGGGTGGTTGGCTTG+GGG + chr6_4:46419772-46419791 Msa0989490:intron 60.0%
TCAAGCGAGGCTTCGCTCCA+TGG + chr6_4:46420010-46420029 Msa0989490:intron 60.0%
! TGCCCCTGGGGCACTAGTTA+AGG - chr6_4:46421930-46421949 None:intergenic 60.0%
!! GTGGTGGGCTCAAAGAACCC+AGG - chr6_4:46422628-46422647 None:intergenic 60.0%
TGAGCCCACCACCTGTTGTC+CGG + chr6_4:46422636-46422655 Msa0989490:CDS 60.0%
CTAACAGGCCGGACAACAGG+TGG - chr6_4:46422647-46422666 None:intergenic 60.0%
TTCACCTGCAGGGCCTTTGG+CGG + chr6_4:46423430-46423449 Msa0989490:intron 60.0%
CTTGGATGCCCCTGTATCGC+GGG - chr6_4:46423798-46423817 None:intergenic 60.0%
GCTTGGATGCCCCTGTATCG+CGG - chr6_4:46423799-46423818 None:intergenic 60.0%
TCCAGTCCCAGGCTGGCAAA+TGG + chr6_4:46424062-46424081 Msa0989490:CDS 60.0%
CCAGTCCCAGGCTGGCAAAT+GGG + chr6_4:46424063-46424082 Msa0989490:CDS 60.0%
GTGCACCCATTTGCCAGCCT+GGG - chr6_4:46424071-46424090 None:intergenic 60.0%
ACTGAGACACCCATGCCAGG+CGG - chr6_4:46424093-46424112 None:intergenic 60.0%
!! GCAGCTGAAGGCGCTACACT+AGG - chr6_4:46424916-46424935 None:intergenic 60.0%
! TGTGCTTGTGGAGGGAGCGT+TGG - chr6_4:46425006-46425025 None:intergenic 60.0%
! GGAGGCATGGGTGGTTGGCT+TGG + chr6_4:46419770-46419789 Msa0989490:intron 65.0%
!! GGTGGTTGGCTTGGGGCCTA+AGG + chr6_4:46419779-46419798 Msa0989490:intron 65.0%
! AACTAGTGCCCCAGGGGCAC+TGG + chr6_4:46421931-46421950 Msa0989490:intron 65.0%
CAGGCCGGACAACAGGTGGT+GGG - chr6_4:46422643-46422662 None:intergenic 65.0%
ACAGGCCGGACAACAGGTGG+TGG - chr6_4:46422644-46422663 None:intergenic 65.0%
TCACCTGCAGGGCCTTTGGC+GGG + chr6_4:46423431-46423450 Msa0989490:intron 65.0%
TCCTTCCCTGCTCCAGTCCC+AGG + chr6_4:46424051-46424070 Msa0989490:CDS 65.0%
CCCATTTGCCAGCCTGGGAC+TGG - chr6_4:46424066-46424085 None:intergenic 65.0%
GGTGCACCCATTTGCCAGCC+TGG - chr6_4:46424072-46424091 None:intergenic 65.0%
TGGCAAATGGGTGCACCGCC+TGG + chr6_4:46424075-46424094 Msa0989490:CDS 65.0%
AATGGGTGCACCGCCTGGCA+TGG + chr6_4:46424080-46424099 Msa0989490:CDS 65.0%
ATGGGTGCACCGCCTGGCAT+GGG + chr6_4:46424081-46424100 Msa0989490:CDS 65.0%
GATCCCGCCAAAGGCCCTGC+AGG - chr6_4:46423437-46423456 None:intergenic 70.0%
GCCTGGGACTGGAGCAGGGA+AGG - chr6_4:46424055-46424074 None:intergenic 70.0%
TCCCTGCTCCAGTCCCAGGC+TGG + chr6_4:46424055-46424074 Msa0989490:CDS 70.0%
GCCAGCCTGGGACTGGAGCA+GGG - chr6_4:46424059-46424078 None:intergenic 70.0%
TGCCAGCCTGGGACTGGAGC+AGG - chr6_4:46424060-46424079 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 46417837 46426183 46417837 ID=Msa0989490;Name=Msa0989490
chr6_4 mRNA 46417837 46426183 46417837 ID=Msa0989490-mRNA-1;Parent=Msa0989490;Name=Msa0989490-mRNA-1;_AED=0.08;_eAED=0.08;_QI=445|1|1|1|0.78|0.73|15|513|688
chr6_4 exon 46417837 46418273 46417837 ID=Msa0989490-mRNA-1:exon:10396;Parent=Msa0989490-mRNA-1
chr6_4 exon 46418868 46418974 46418868 ID=Msa0989490-mRNA-1:exon:10397;Parent=Msa0989490-mRNA-1
chr6_4 exon 46420455 46420516 46420455 ID=Msa0989490-mRNA-1:exon:10398;Parent=Msa0989490-mRNA-1
chr6_4 exon 46420883 46420970 46420883 ID=Msa0989490-mRNA-1:exon:10399;Parent=Msa0989490-mRNA-1
chr6_4 exon 46421070 46421131 46421070 ID=Msa0989490-mRNA-1:exon:10400;Parent=Msa0989490-mRNA-1
chr6_4 exon 46421208 46421301 46421208 ID=Msa0989490-mRNA-1:exon:10401;Parent=Msa0989490-mRNA-1
chr6_4 exon 46422323 46422760 46422323 ID=Msa0989490-mRNA-1:exon:10402;Parent=Msa0989490-mRNA-1
chr6_4 exon 46423037 46423352 46423037 ID=Msa0989490-mRNA-1:exon:10403;Parent=Msa0989490-mRNA-1
chr6_4 exon 46423441 46423685 46423441 ID=Msa0989490-mRNA-1:exon:10404;Parent=Msa0989490-mRNA-1
chr6_4 exon 46423807 46423926 46423807 ID=Msa0989490-mRNA-1:exon:10405;Parent=Msa0989490-mRNA-1
chr6_4 exon 46424027 46424131 46424027 ID=Msa0989490-mRNA-1:exon:10406;Parent=Msa0989490-mRNA-1
chr6_4 exon 46424242 46424325 46424242 ID=Msa0989490-mRNA-1:exon:10407;Parent=Msa0989490-mRNA-1
chr6_4 exon 46424880 46425051 46424880 ID=Msa0989490-mRNA-1:exon:10408;Parent=Msa0989490-mRNA-1
chr6_4 exon 46425139 46425184 46425139 ID=Msa0989490-mRNA-1:exon:10409;Parent=Msa0989490-mRNA-1
chr6_4 exon 46425535 46426183 46425535 ID=Msa0989490-mRNA-1:exon:10410;Parent=Msa0989490-mRNA-1
chr6_4 five_prime_UTR 46417837 46418273 46417837 ID=Msa0989490-mRNA-1:five_prime_utr;Parent=Msa0989490-mRNA-1
chr6_4 five_prime_UTR 46418868 46418875 46418868 ID=Msa0989490-mRNA-1:five_prime_utr;Parent=Msa0989490-mRNA-1
chr6_4 CDS 46418876 46418974 46418876 ID=Msa0989490-mRNA-1:cds;Parent=Msa0989490-mRNA-1
chr6_4 CDS 46420455 46420516 46420455 ID=Msa0989490-mRNA-1:cds;Parent=Msa0989490-mRNA-1
chr6_4 CDS 46420883 46420970 46420883 ID=Msa0989490-mRNA-1:cds;Parent=Msa0989490-mRNA-1
chr6_4 CDS 46421070 46421131 46421070 ID=Msa0989490-mRNA-1:cds;Parent=Msa0989490-mRNA-1
chr6_4 CDS 46421208 46421301 46421208 ID=Msa0989490-mRNA-1:cds;Parent=Msa0989490-mRNA-1
chr6_4 CDS 46422323 46422760 46422323 ID=Msa0989490-mRNA-1:cds;Parent=Msa0989490-mRNA-1
chr6_4 CDS 46423037 46423352 46423037 ID=Msa0989490-mRNA-1:cds;Parent=Msa0989490-mRNA-1
chr6_4 CDS 46423441 46423685 46423441 ID=Msa0989490-mRNA-1:cds;Parent=Msa0989490-mRNA-1
chr6_4 CDS 46423807 46423926 46423807 ID=Msa0989490-mRNA-1:cds;Parent=Msa0989490-mRNA-1
chr6_4 CDS 46424027 46424131 46424027 ID=Msa0989490-mRNA-1:cds;Parent=Msa0989490-mRNA-1
chr6_4 CDS 46424242 46424325 46424242 ID=Msa0989490-mRNA-1:cds;Parent=Msa0989490-mRNA-1
chr6_4 CDS 46424880 46425051 46424880 ID=Msa0989490-mRNA-1:cds;Parent=Msa0989490-mRNA-1
chr6_4 CDS 46425139 46425184 46425139 ID=Msa0989490-mRNA-1:cds;Parent=Msa0989490-mRNA-1
chr6_4 CDS 46425535 46425670 46425535 ID=Msa0989490-mRNA-1:cds;Parent=Msa0989490-mRNA-1
chr6_4 three_prime_UTR 46425671 46426183 46425671 ID=Msa0989490-mRNA-1:three_prime_utr;Parent=Msa0989490-mRNA-1
Gene Sequence

>Msa0989490

ATGACAAGTCGACTAAAGGAAGATCAGAAAAATGAACGAACTATTCGAGGTCTTCTCAAACTTACACCGAATCGAAGATGCATTAACTGCAACAGCATGGGACCACAATATGTATGCACAAATTTCTGGACGTTTGTTTGCACAAACTGCAGTGGAATACACCGGGAATTTACTCATCGAGTAAAATCAATCTCCATGGCTAAATTTACTGCACAAGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAAAGAAATATTTTTCAAAGAATGGGATGCGCAAACTCATTCTTTACCTGATAGCGGTAATGTTGACAGGCTTCGGGACTTTATCAAGCGTGTTTATGTGGATAGGAGATTCACTGGCGACAGGTCCTATGACAAACCTCCAAGAGTAAAGGGCGACAAGGATGATTCCTATGACACCAGGAAGACGGAGTCGTATCAGGGAGGACCAAAAAGCATTCCTTATGAGGATACATATGAACACCGTTTCAGTGATAGGTCTAGTTCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGACATTATGCCGATCATAAGAGAAGCCCTGGCCGCCCTCCAATAATCAATGACTGGCGCCGTGAAGATAGATTTGGAGATGGACGGAAATTCGAAGATAATCGTATAACTGATGGAGGTATTAAGATGGAAAGCCAATCTCTTGAACGAGCCAAAGACCTGGGTTCTTTGAGCCCACCACCTGTTGTCCGGCCTGTTAGAGAAATTTTGGGAGAAAATGTAGTACCTCTGCGAATTAGTGAACCTCCCAAAGCAAACAGTGGACAGGCTGCTAATGGCTCAACACTCACACAGAGAACGGCATCTTCCAGTAGCTTGGCATCCAGTAATGGAACCTCATCAGAAGTTAAGCTTGAGACTATCAGGAGCCTTATTGATTTTGATGATGTTCCTGAACCACCTATTGCTCCAGTAATTCCTCAAGCCACACAAACTACCGTGGCTCAAATTGTGAACCCAACAAATTCTGGTGATAACAATTGGGCCTCCTTTGATGTTGCACCTGAGGTAAAAGTATCTCAGGGCCTTTCAAATGTAAATCCACTCGAATCGATGCTGTCCCAGTTGTCAGTTCCATCATCTTTACCTGATCAAGTTTCTGGAGTCCAAGGGCCTTTGGCGGGATCAGCTCTTACTGCTACTGCCGGAGCTCCAACTGTGAACATCTTCGCAACATTCCCATCCAGTGTTGCTTCATTAGCATCTTCTGGATTGACAATGGAATCGCCTTTCAATAATGCACTCCCATGGCCTAATTTGCAGTATCAGCAGCAACAACCGTTGTTCACATCTGCTGTTGGTCAGCCTACTATTCAACAATCTACACCACCAGTAGGTGGAGCTTTGAATAACCAGGGGCATCCAAGCACGCTAGTGCCACATTTCTCAAAGGTTGTCAATGGGGAAAAATCTAATTTTGCGCCACAAACTTCTACTGTAGACACAAAACCAAGTGGAAGAAATGAACTTCCTGAGGATCTATTCACTATAAAATATTCATCCTTCCCTGCTCCAGTCCCAGGCTGGCAAATGGGTGCACCGCCTGGCATGGGTGTCTCAGTTCAATATAATAATGTGATGTCCATGCCGAGTTTTCCACAACCATCACAATCTACAAATCCATTTGATGTGATCAACGAACCAACACCAGTTCAAGCCCCAACCTTTCCTTCTATGTCATCTTTGCAAGGTGCTCTGCCTAGTGTAGCGCCTTCAGCTGCAGTAAACCCTTCAAACATGGGTAATCAATCTCTTTCCTGGAATCCACCCTCCTCGTTATCATATGCACCAACGCTCCCTCCACAAGCACATATTCATGCCTCAGCAATGGGACCAAGGGCGTACATGGAGCAACAACTTCCCACTAATGTGCCAATGCCAAGGCATCAAGGAATTGGGACTTTTGGTAATGAGGGAGCTGCTTTTGGCTTCTCTAATATAGATCAGCAACTGAATGGTAGGTCGTCGGCCTCTGCTACTTTAAACCCCTTCCCTGCAGGAGGTAATCCATTCGGATGA
Protein sequence

>Msa0989490

MTSRLKEDQKNERTIRGLLKLTPNRRCINCNSMGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTAQEVSALQEGGNQRAKEIFFKEWDAQTHSLPDSGNVDRLRDFIKRVYVDRRFTGDRSYDKPPRVKGDKDDSYDTRKTESYQGGPKSIPYEDTYEHRFSDRSSSGGRSPGYDQERHYADHKRSPGRPPIINDWRREDRFGDGRKFEDNRITDGGIKMESQSLERAKDLGSLSPPPVVRPVREILGENVVPLRISEPPKANSGQAANGSTLTQRTASSSSLASSNGTSSEVKLETIRSLIDFDDVPEPPIAPVIPQATQTTVAQIVNPTNSGDNNWASFDVAPEVKVSQGLSNVNPLESMLSQLSVPSSLPDQVSGVQGPLAGSALTATAGAPTVNIFATFPSSVASLASSGLTMESPFNNALPWPNLQYQQQQPLFTSAVGQPTIQQSTPPVGGALNNQGHPSTLVPHFSKVVNGEKSNFAPQTSTVDTKPSGRNELPEDLFTIKYSSFPAPVPGWQMGAPPGMGVSVQYNNVMSMPSFPQPSQSTNPFDVINEPTPVQAPTFPSMSSLQGALPSVAPSAAVNPSNMGNQSLSWNPPSSLSYAPTLPPQAHIHASAMGPRAYMEQQLPTNVPMPRHQGIGTFGNEGAAFGFSNIDQQLNGRSSASATLNPFPAGGNPFG*