AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0040410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040410 MtrunA17_Chr1g0205431 88.780 205 15 1 1 197 1 205 1.62e-129 362
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0040410 AT1G05385.2 69.231 143 41 1 55 197 6 145 1.08e-64 196
Msa0040410 AT1G05385.1 69.231 143 41 1 55 197 60 199 2.18e-64 197

Find 82 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATGAACCAAAACTTATT+TGG 0.141055 1_1:-70579474 None:intergenic
AAATAGTGGTTTCAACATTT+TGG 0.171253 1_1:-70579232 None:intergenic
TCCCATGCTATCTGATTCTT+TGG 0.185657 1_1:-70579261 None:intergenic
GATCCATGATATACTAATTC+TGG 0.212831 1_1:-70579618 None:intergenic
CCCTGACTTTGTCTTCTCAT+TGG 0.218549 1_1:-70578748 None:intergenic
GAAAACGATGATGGGGTTAT+TGG 0.237764 1_1:+70578702 Msa0040410:CDS
GGTTAATACATTTATAATAA+AGG 0.242846 1_1:-70579515 None:intergenic
CCCATGCTATCTGATTCTTT+GGG 0.264272 1_1:-70579260 None:intergenic
ATCTGCAGTCCGTCTAAATT+TGG 0.273557 1_1:-70578859 None:intergenic
TTACAGTTTATCACCATTAA+TGG 0.273988 1_1:+70578647 Msa0040410:CDS
TCTTCGGCCCATGCCATTAA+TGG 0.281488 1_1:-70578660 None:intergenic
CCTGACTTTGTCTTCTCATT+GGG 0.285272 1_1:-70578747 None:intergenic
GAAATATATTTACCTAGTTT+TGG 0.304398 1_1:+70579348 Msa0040410:three_prime_UTR
CTAAATTTGGCATTGTCATC+AGG 0.305219 1_1:-70578846 None:intergenic
AAAACGATGATGGGGTTATT+GGG 0.311993 1_1:+70578703 Msa0040410:CDS
GTTAATACATTTATAATAAA+GGG 0.313470 1_1:-70579514 None:intergenic
ACCATGTTCCAAATAAGTTT+TGG 0.328063 1_1:+70579466 Msa0040410:three_prime_UTR
TTCTACAGTCCTCTCTGTCT+TGG 0.330880 1_1:-70579412 None:intergenic
TTCTTTGGGGTTTGAAATAG+TGG 0.335423 1_1:-70579246 None:intergenic
TTAACCCTAAGTTATATAAT+AGG 0.348572 1_1:+70579532 Msa0040410:three_prime_UTR
TCTACAGTCCTCTCTGTCTT+GGG 0.362912 1_1:-70579411 None:intergenic
GGTAAAAGCAGTAAGATCTT+TGG 0.364747 1_1:+70579104 Msa0040410:CDS
AATTAGCGTTGCCACTTCAT+TGG 0.375737 1_1:+70578608 Msa0040410:CDS
TGTGAATGTAGTCAACATTC+TGG 0.376130 1_1:+70577684 Msa0040410:five_prime_UTR
CCCAATGAGAAGACAAAGTC+AGG 0.396652 1_1:+70578747 Msa0040410:CDS
ATTGAAGAAGAGACTATTGC+TGG 0.398478 1_1:+70577650 Msa0040410:five_prime_UTR
TGCAGCAAAGGAGTCGATTC+GGG 0.402932 1_1:+70578881 Msa0040410:CDS
AATAAAGGGTGATGAGAAGT+TGG 0.413928 1_1:-70579500 None:intergenic
AAATTCCTATTATATAACTT+AGG 0.424490 1_1:-70579537 None:intergenic
GACTTAACTTCCGTCGGCAG+TGG 0.431839 1_1:-70579159 None:intergenic
ATGCAGCAAAGGAGTCGATT+CGG 0.434911 1_1:+70578880 Msa0040410:CDS
AATTCCTATTATATAACTTA+GGG 0.439036 1_1:-70579536 None:intergenic
GAGAACCTTACCTGTGCAAA+TGG 0.441168 1_1:-70577468 None:intergenic
GGAACACATAATAGCTGAAA+AGG 0.441979 1_1:-70577737 None:intergenic
TTTGTCAGCTGACTTCTCTT+CGG 0.445390 1_1:-70578676 None:intergenic
TTCGGGAGTATCTTGGTAGT+TGG 0.447521 1_1:+70578898 Msa0040410:CDS
AATTGAAAGGTTTCTGCGAC+TGG 0.455585 1_1:-70578589 None:intergenic
GCTGACTTTAAGTAAGCCTT+CGG 0.465034 1_1:-70578780 None:intergenic
TATCCAGAATTAGTATATCA+TGG 0.477536 1_1:+70579615 Msa0040410:three_prime_UTR
GCAGGAATCATACTTTGCTC+TGG 0.488174 1_1:+70579083 Msa0040410:intron
GGAAATTTCGTAAAAGAGAA+TGG 0.492580 1_1:+70577708 Msa0040410:exon
ACTTAACTTCCGTCGGCAGT+GGG 0.492647 1_1:-70579158 None:intergenic
ATACTTCTTGAGAAACAGTC+TGG 0.498665 1_1:-70578929 None:intergenic
TCCGTCGGCAGTGGGGCTGA+TGG 0.499406 1_1:-70579150 None:intergenic
TAACAGATAAACTGCAATCC+AGG 0.501310 1_1:+70578535 Msa0040410:intron
GACAAAGAGGAAAACGATGA+TGG 0.503005 1_1:+70578693 Msa0040410:CDS
CCCCAAAGAATCAGATAGCA+TGG 0.504637 1_1:+70579259 Msa0040410:three_prime_UTR
GGGAGTATCTTGGTAGTTGG+AGG 0.505346 1_1:+70578901 Msa0040410:CDS
CCATGCTATCTGATTCTTTG+GGG 0.513797 1_1:-70579259 None:intergenic
GGGATCAAATAACGATTTGA+CGG 0.517749 1_1:-70578727 None:intergenic
TCGGAGCCTTCCATTTGCAC+AGG 0.519668 1_1:+70577458 Msa0040410:five_prime_UTR
GAGTCGATTCGGGAGTATCT+TGG 0.529772 1_1:+70578891 Msa0040410:CDS
ACAAAGAGGAAAACGATGAT+GGG 0.531382 1_1:+70578694 Msa0040410:CDS
GTTTATCACCATTAATGGCA+TGG 0.531611 1_1:+70578652 Msa0040410:CDS
GATACCTTCAGAACTTGTGA+TGG 0.534488 1_1:-70577758 None:intergenic
TAAATTTGGCATTGTCATCA+GGG 0.539047 1_1:-70578845 None:intergenic
GGTAATTATCAACCAAAACT+AGG 0.545076 1_1:-70579360 None:intergenic
TTTATCACCATTAATGGCAT+GGG 0.553461 1_1:+70578653 Msa0040410:CDS
GCCATCAGCCCCACTGCCGA+CGG 0.555502 1_1:+70579149 Msa0040410:CDS
ACCTTACCTGTGCAAATGGA+AGG 0.556743 1_1:-70577464 None:intergenic
TTACTTAAAGTCAGCAAGAG+AGG 0.560221 1_1:+70578788 Msa0040410:CDS
AAGTGGCAACGCTAATTGAA+AGG 0.563857 1_1:-70578602 None:intergenic
AGAGAAGTCAGCTGACAAAG+AGG 0.564571 1_1:+70578680 Msa0040410:CDS
TGTTATTGTAACCAATGAAG+TGG 0.566510 1_1:-70578619 None:intergenic
TAATTACCCCTCACCTCCAC+CGG 0.568438 1_1:+70579375 Msa0040410:three_prime_UTR
AAACGATGATGGGGTTATTG+GGG 0.568617 1_1:+70578704 Msa0040410:CDS
GGAGTATCTTGGTAGTTGGA+GGG 0.581542 1_1:+70578902 Msa0040410:CDS
ACCAAAACTTATTTGGAACA+TGG 0.587069 1_1:-70579467 None:intergenic
TGTTCCATCACAAGTTCTGA+AGG 0.589057 1_1:+70577754 Msa0040410:CDS
CTGCGACTGGAAGCTTCGAG+AGG 0.595865 1_1:-70578576 None:intergenic
ACGGACTGCAGATGCAGCAA+AGG 0.596536 1_1:+70578869 Msa0040410:CDS
TCATTGGTTACAATAACATG+TGG 0.609111 1_1:+70578624 Msa0040410:CDS
AAGCTGTGCAGTATTAGACC+TGG 0.611400 1_1:-70578553 None:intergenic
CCCAAAGAATCAGATAGCAT+GGG 0.613209 1_1:+70579260 Msa0040410:three_prime_UTR
ATGACAATGCCAAATTTAGA+CGG 0.613681 1_1:+70578850 Msa0040410:CDS
ATTTCAGACTTAACTTCCGT+CGG 0.625733 1_1:-70579165 None:intergenic
TGCAGAGTCTGTAAAACATG+AGG 0.635500 1_1:-70579442 None:intergenic
CTTAACTTCCGTCGGCAGTG+GGG 0.642851 1_1:-70579157 None:intergenic
GAATGTAGTCAACATTCTGG+AGG 0.654559 1_1:+70577687 Msa0040410:five_prime_UTR
CAAAGAGGAAAACGATGATG+GGG 0.655727 1_1:+70578695 Msa0040410:CDS
GAGTATCTTGGTAGTTGGAG+GGG 0.662716 1_1:+70578903 Msa0040410:CDS
CCAATGAGAAGACAAAGTCA+GGG 0.666576 1_1:+70578748 Msa0040410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAATACATTTATAATAAA+GGG - chr1_1:70579517-70579536 None:intergenic 10.0%
!! GTTAATACATTTATAATAAA+GGG - chr1_1:70579517-70579536 None:intergenic 10.0%
!! AAATATATATAATCATGCTT+TGG + chr1_1:70579049-70579068 Msa0040410:intron 15.0%
!! GGTTAATACATTTATAATAA+AGG - chr1_1:70579518-70579537 None:intergenic 15.0%
!! AATTCCTATTATATAACTTA+GGG - chr1_1:70579539-70579558 None:intergenic 15.0%
!! AAATTCCTATTATATAACTT+AGG - chr1_1:70579540-70579559 None:intergenic 15.0%
!! AAATATATATAATCATGCTT+TGG + chr1_1:70579049-70579068 Msa0040410:intron 15.0%
!! GGTTAATACATTTATAATAA+AGG - chr1_1:70579518-70579537 None:intergenic 15.0%
!! AATTCCTATTATATAACTTA+GGG - chr1_1:70579539-70579558 None:intergenic 15.0%
!! AAATTCCTATTATATAACTT+AGG - chr1_1:70579540-70579559 None:intergenic 15.0%
!! AAATTGAAGAAAGGAAATAA+AGG - chr1_1:70577510-70577529 None:intergenic 20.0%
!! AGTAATTGAAAATTGAAGAA+AGG - chr1_1:70577519-70577538 None:intergenic 20.0%
!!! TCAAAATGTTTGAAATAGTA+AGG - chr1_1:70577809-70577828 None:intergenic 20.0%
!!! TATTTCAAACATTTTGAGAT+TGG + chr1_1:70577812-70577831 Msa0040410:intron 20.0%
!! ATTAATCTATTTATCCAGAT+AGG + chr1_1:70578048-70578067 Msa0040410:intron 20.0%
!!! AAATTGTTTTAAGGTTTGTT+TGG + chr1_1:70578170-70578189 Msa0040410:intron 20.0%
!! AAACTGTTATGTATAGTTTA+TGG - chr1_1:70578297-70578316 None:intergenic 20.0%
!!! TAAGCTGTTTTTTATATCAA+AGG - chr1_1:70578368-70578387 None:intergenic 20.0%
!! TTTCTATAAAAATTCTTCAG+CGG - chr1_1:70579208-70579227 None:intergenic 20.0%
!!! GAAATATATTTACCTAGTTT+TGG + chr1_1:70579348-70579367 Msa0040410:three_prime_UTR 20.0%
!! TTAACCCTAAGTTATATAAT+AGG + chr1_1:70579532-70579551 Msa0040410:three_prime_UTR 20.0%
!! AAATTGAAGAAAGGAAATAA+AGG - chr1_1:70577510-70577529 None:intergenic 20.0%
!! AGTAATTGAAAATTGAAGAA+AGG - chr1_1:70577519-70577538 None:intergenic 20.0%
!!! TCAAAATGTTTGAAATAGTA+AGG - chr1_1:70577809-70577828 None:intergenic 20.0%
!!! TATTTCAAACATTTTGAGAT+TGG + chr1_1:70577812-70577831 Msa0040410:intron 20.0%
!! ATTAATCTATTTATCCAGAT+AGG + chr1_1:70578048-70578067 Msa0040410:intron 20.0%
!!! AAATTGTTTTAAGGTTTGTT+TGG + chr1_1:70578170-70578189 Msa0040410:intron 20.0%
!! AAACTGTTATGTATAGTTTA+TGG - chr1_1:70578297-70578316 None:intergenic 20.0%
!!! TAAGCTGTTTTTTATATCAA+AGG - chr1_1:70578368-70578387 None:intergenic 20.0%
!! TTTCTATAAAAATTCTTCAG+CGG - chr1_1:70579208-70579227 None:intergenic 20.0%
!!! GAAATATATTTACCTAGTTT+TGG + chr1_1:70579348-70579367 Msa0040410:three_prime_UTR 20.0%
!! TTAACCCTAAGTTATATAAT+AGG + chr1_1:70579532-70579551 Msa0040410:three_prime_UTR 20.0%
! ATCAAAAGATTTGACATTGA+AGG + chr1_1:70577778-70577797 Msa0040410:intron 25.0%
!! TTTTCATAAGCTATCTATCT+TGG - chr1_1:70577932-70577951 None:intergenic 25.0%
!!! TTTTAAGGTTTGTTTGGAAT+TGG + chr1_1:70578176-70578195 Msa0040410:intron 25.0%
! CATATGCACTTATATGATAA+GGG + chr1_1:70578390-70578409 Msa0040410:intron 25.0%
! ATATGCACTTATATGATAAG+GGG + chr1_1:70578391-70578410 Msa0040410:intron 25.0%
! TTACAGTTTATCACCATTAA+TGG + chr1_1:70578647-70578666 Msa0040410:CDS 25.0%
!! TAGCATATATGTTAGGATTT+TGG + chr1_1:70578996-70579015 Msa0040410:intron 25.0%
!! AAATAGTGGTTTCAACATTT+TGG - chr1_1:70579235-70579254 None:intergenic 25.0%
!!! CTTGGGTTTTTATTTTTATC+CGG - chr1_1:70579397-70579416 None:intergenic 25.0%
! ATCATGAACCAAAACTTATT+TGG - chr1_1:70579477-70579496 None:intergenic 25.0%
!!! TGACATTTTAGAGTGTAAAT+CGG - chr1_1:70579590-70579609 None:intergenic 25.0%
! TATCCAGAATTAGTATATCA+TGG + chr1_1:70579615-70579634 Msa0040410:three_prime_UTR 25.0%
! ATCAAAAGATTTGACATTGA+AGG + chr1_1:70577778-70577797 Msa0040410:intron 25.0%
!! TTTTCATAAGCTATCTATCT+TGG - chr1_1:70577932-70577951 None:intergenic 25.0%
!!! TTTTAAGGTTTGTTTGGAAT+TGG + chr1_1:70578176-70578195 Msa0040410:intron 25.0%
! CATATGCACTTATATGATAA+GGG + chr1_1:70578390-70578409 Msa0040410:intron 25.0%
! ATATGCACTTATATGATAAG+GGG + chr1_1:70578391-70578410 Msa0040410:intron 25.0%
! TTACAGTTTATCACCATTAA+TGG + chr1_1:70578647-70578666 Msa0040410:CDS 25.0%
!! TAGCATATATGTTAGGATTT+TGG + chr1_1:70578996-70579015 Msa0040410:intron 25.0%
!! AAATAGTGGTTTCAACATTT+TGG - chr1_1:70579235-70579254 None:intergenic 25.0%
!!! CTTGGGTTTTTATTTTTATC+CGG - chr1_1:70579397-70579416 None:intergenic 25.0%
! ATCATGAACCAAAACTTATT+TGG - chr1_1:70579477-70579496 None:intergenic 25.0%
!!! TGACATTTTAGAGTGTAAAT+CGG - chr1_1:70579590-70579609 None:intergenic 25.0%
! TATCCAGAATTAGTATATCA+TGG + chr1_1:70579615-70579634 Msa0040410:three_prime_UTR 25.0%
! CATATCTGCAATACTCTTTT+GGG - chr1_1:70577560-70577579 None:intergenic 30.0%
! TCATATCTGCAATACTCTTT+TGG - chr1_1:70577561-70577580 None:intergenic 30.0%
GGAAATTTCGTAAAAGAGAA+TGG + chr1_1:70577708-70577727 Msa0040410:exon 30.0%
ATTGAATGATACAACCTATC+TGG - chr1_1:70578065-70578084 None:intergenic 30.0%
GGTTGTATCATTCAATTGAA+AGG + chr1_1:70578069-70578088 Msa0040410:intron 30.0%
!! TTGCACTATAGTATTGATAG+TGG + chr1_1:70578142-70578161 Msa0040410:intron 30.0%
GCATATGCACTTATATGATA+AGG + chr1_1:70578389-70578408 Msa0040410:intron 30.0%
! GTAAGTATTGTATGACACAA+AGG - chr1_1:70578458-70578477 None:intergenic 30.0%
GTCATACAATACTTACAACA+TGG + chr1_1:70578462-70578481 Msa0040410:intron 30.0%
ATGGTAAACTAAGTAAGAGT+AGG + chr1_1:70578481-70578500 Msa0040410:intron 30.0%
GAAAAGCTGTCAATAAATGA+AGG - chr1_1:70578508-70578527 None:intergenic 30.0%
TGTTATTGTAACCAATGAAG+TGG - chr1_1:70578622-70578641 None:intergenic 30.0%
! TCATTGGTTACAATAACATG+TGG + chr1_1:70578624-70578643 Msa0040410:CDS 30.0%
TTTATCACCATTAATGGCAT+GGG + chr1_1:70578653-70578672 Msa0040410:CDS 30.0%
TAAATTTGGCATTGTCATCA+GGG - chr1_1:70578848-70578867 None:intergenic 30.0%
ATGACAATGCCAAATTTAGA+CGG + chr1_1:70578850-70578869 Msa0040410:CDS 30.0%
CTTTGACTAGCATATATGTT+AGG + chr1_1:70578989-70579008 Msa0040410:intron 30.0%
CATTCACAAAAAGAAAAGAC+TGG - chr1_1:70579028-70579047 None:intergenic 30.0%
GGTAATTATCAACCAAAACT+AGG - chr1_1:70579363-70579382 None:intergenic 30.0%
!!! TTTTTATTTTTATCCGGTGG+AGG - chr1_1:70579391-70579410 None:intergenic 30.0%
! ACCATGTTCCAAATAAGTTT+TGG + chr1_1:70579466-70579485 Msa0040410:three_prime_UTR 30.0%
! ACCAAAACTTATTTGGAACA+TGG - chr1_1:70579470-70579489 None:intergenic 30.0%
GATCCATGATATACTAATTC+TGG - chr1_1:70579621-70579640 None:intergenic 30.0%
! CATATCTGCAATACTCTTTT+GGG - chr1_1:70577560-70577579 None:intergenic 30.0%
! TCATATCTGCAATACTCTTT+TGG - chr1_1:70577561-70577580 None:intergenic 30.0%
GGAAATTTCGTAAAAGAGAA+TGG + chr1_1:70577708-70577727 Msa0040410:exon 30.0%
ATTGAATGATACAACCTATC+TGG - chr1_1:70578065-70578084 None:intergenic 30.0%
GGTTGTATCATTCAATTGAA+AGG + chr1_1:70578069-70578088 Msa0040410:intron 30.0%
!! TTGCACTATAGTATTGATAG+TGG + chr1_1:70578142-70578161 Msa0040410:intron 30.0%
GCATATGCACTTATATGATA+AGG + chr1_1:70578389-70578408 Msa0040410:intron 30.0%
! GTAAGTATTGTATGACACAA+AGG - chr1_1:70578458-70578477 None:intergenic 30.0%
GTCATACAATACTTACAACA+TGG + chr1_1:70578462-70578481 Msa0040410:intron 30.0%
ATGGTAAACTAAGTAAGAGT+AGG + chr1_1:70578481-70578500 Msa0040410:intron 30.0%
GAAAAGCTGTCAATAAATGA+AGG - chr1_1:70578508-70578527 None:intergenic 30.0%
TGTTATTGTAACCAATGAAG+TGG - chr1_1:70578622-70578641 None:intergenic 30.0%
! TCATTGGTTACAATAACATG+TGG + chr1_1:70578624-70578643 Msa0040410:CDS 30.0%
TTTATCACCATTAATGGCAT+GGG + chr1_1:70578653-70578672 Msa0040410:CDS 30.0%
TAAATTTGGCATTGTCATCA+GGG - chr1_1:70578848-70578867 None:intergenic 30.0%
ATGACAATGCCAAATTTAGA+CGG + chr1_1:70578850-70578869 Msa0040410:CDS 30.0%
CTTTGACTAGCATATATGTT+AGG + chr1_1:70578989-70579008 Msa0040410:intron 30.0%
CATTCACAAAAAGAAAAGAC+TGG - chr1_1:70579028-70579047 None:intergenic 30.0%
GGTAATTATCAACCAAAACT+AGG - chr1_1:70579363-70579382 None:intergenic 30.0%
!!! TTTTTATTTTTATCCGGTGG+AGG - chr1_1:70579391-70579410 None:intergenic 30.0%
! ACCATGTTCCAAATAAGTTT+TGG + chr1_1:70579466-70579485 Msa0040410:three_prime_UTR 30.0%
! ACCAAAACTTATTTGGAACA+TGG - chr1_1:70579470-70579489 None:intergenic 30.0%
GATCCATGATATACTAATTC+TGG - chr1_1:70579621-70579640 None:intergenic 30.0%
ATTGAAGAAGAGACTATTGC+TGG + chr1_1:70577650-70577669 Msa0040410:five_prime_UTR 35.0%
TGTGAATGTAGTCAACATTC+TGG + chr1_1:70577684-70577703 Msa0040410:five_prime_UTR 35.0%
GGAACACATAATAGCTGAAA+AGG - chr1_1:70577740-70577759 None:intergenic 35.0%
!! GTGGCTCGTAAATTGTTTTA+AGG + chr1_1:70578161-70578180 Msa0040410:intron 35.0%
TGCTTATTATGAGAGAGCTA+TGG + chr1_1:70578212-70578231 Msa0040410:intron 35.0%
TAACAGATAAACTGCAATCC+AGG + chr1_1:70578535-70578554 Msa0040410:intron 35.0%
GTTTATCACCATTAATGGCA+TGG + chr1_1:70578652-70578671 Msa0040410:CDS 35.0%
ACAAAGAGGAAAACGATGAT+GGG + chr1_1:70578694-70578713 Msa0040410:CDS 35.0%
!! AAAACGATGATGGGGTTATT+GGG + chr1_1:70578703-70578722 Msa0040410:CDS 35.0%
GGGATCAAATAACGATTTGA+CGG - chr1_1:70578730-70578749 None:intergenic 35.0%
TTACTTAAAGTCAGCAAGAG+AGG + chr1_1:70578788-70578807 Msa0040410:CDS 35.0%
CTAAATTTGGCATTGTCATC+AGG - chr1_1:70578849-70578868 None:intergenic 35.0%
ATACTTCTTGAGAAACAGTC+TGG - chr1_1:70578932-70578951 None:intergenic 35.0%
GGTAAAAGCAGTAAGATCTT+TGG + chr1_1:70579104-70579123 Msa0040410:CDS 35.0%
! TTTGGCAAACTTTTACTCAG+AGG + chr1_1:70579122-70579141 Msa0040410:CDS 35.0%
ATTTCAGACTTAACTTCCGT+CGG - chr1_1:70579168-70579187 None:intergenic 35.0%
!! TTCTTTGGGGTTTGAAATAG+TGG - chr1_1:70579249-70579268 None:intergenic 35.0%
!!! GGGTTTTTATTTTTATCCGG+TGG - chr1_1:70579394-70579413 None:intergenic 35.0%
AATAAAAACCCAAGACAGAG+AGG + chr1_1:70579403-70579422 Msa0040410:three_prime_UTR 35.0%
AATAAAGGGTGATGAGAAGT+TGG - chr1_1:70579503-70579522 None:intergenic 35.0%
ATTGAAGAAGAGACTATTGC+TGG + chr1_1:70577650-70577669 Msa0040410:five_prime_UTR 35.0%
TGTGAATGTAGTCAACATTC+TGG + chr1_1:70577684-70577703 Msa0040410:five_prime_UTR 35.0%
GGAACACATAATAGCTGAAA+AGG - chr1_1:70577740-70577759 None:intergenic 35.0%
!! GTGGCTCGTAAATTGTTTTA+AGG + chr1_1:70578161-70578180 Msa0040410:intron 35.0%
TGCTTATTATGAGAGAGCTA+TGG + chr1_1:70578212-70578231 Msa0040410:intron 35.0%
TAACAGATAAACTGCAATCC+AGG + chr1_1:70578535-70578554 Msa0040410:intron 35.0%
GTTTATCACCATTAATGGCA+TGG + chr1_1:70578652-70578671 Msa0040410:CDS 35.0%
ACAAAGAGGAAAACGATGAT+GGG + chr1_1:70578694-70578713 Msa0040410:CDS 35.0%
!! AAAACGATGATGGGGTTATT+GGG + chr1_1:70578703-70578722 Msa0040410:CDS 35.0%
GGGATCAAATAACGATTTGA+CGG - chr1_1:70578730-70578749 None:intergenic 35.0%
TTACTTAAAGTCAGCAAGAG+AGG + chr1_1:70578788-70578807 Msa0040410:CDS 35.0%
CTAAATTTGGCATTGTCATC+AGG - chr1_1:70578849-70578868 None:intergenic 35.0%
ATACTTCTTGAGAAACAGTC+TGG - chr1_1:70578932-70578951 None:intergenic 35.0%
GGTAAAAGCAGTAAGATCTT+TGG + chr1_1:70579104-70579123 Msa0040410:CDS 35.0%
! TTTGGCAAACTTTTACTCAG+AGG + chr1_1:70579122-70579141 Msa0040410:CDS 35.0%
ATTTCAGACTTAACTTCCGT+CGG - chr1_1:70579168-70579187 None:intergenic 35.0%
!! TTCTTTGGGGTTTGAAATAG+TGG - chr1_1:70579249-70579268 None:intergenic 35.0%
!!! GGGTTTTTATTTTTATCCGG+TGG - chr1_1:70579394-70579413 None:intergenic 35.0%
AATAAAAACCCAAGACAGAG+AGG + chr1_1:70579403-70579422 Msa0040410:three_prime_UTR 35.0%
AATAAAGGGTGATGAGAAGT+TGG - chr1_1:70579503-70579522 None:intergenic 35.0%
AGGAAATAAAGGCGAGGATA+TGG - chr1_1:70577499-70577518 None:intergenic 40.0%
GAAGAAAGGAAATAAAGGCG+AGG - chr1_1:70577505-70577524 None:intergenic 40.0%
GAATGTAGTCAACATTCTGG+AGG + chr1_1:70577687-70577706 Msa0040410:five_prime_UTR 40.0%
! TGTTCCATCACAAGTTCTGA+AGG + chr1_1:70577754-70577773 Msa0040410:CDS 40.0%
GATACCTTCAGAACTTGTGA+TGG - chr1_1:70577761-70577780 None:intergenic 40.0%
TATGACACAAAGGCTCTGTT+TGG - chr1_1:70578448-70578467 None:intergenic 40.0%
AATTGAAAGGTTTCTGCGAC+TGG - chr1_1:70578592-70578611 None:intergenic 40.0%
AAGTGGCAACGCTAATTGAA+AGG - chr1_1:70578605-70578624 None:intergenic 40.0%
! AATTAGCGTTGCCACTTCAT+TGG + chr1_1:70578608-70578627 Msa0040410:CDS 40.0%
! TTTGTCAGCTGACTTCTCTT+CGG - chr1_1:70578679-70578698 None:intergenic 40.0%
GACAAAGAGGAAAACGATGA+TGG + chr1_1:70578693-70578712 Msa0040410:CDS 40.0%
CAAAGAGGAAAACGATGATG+GGG + chr1_1:70578695-70578714 Msa0040410:CDS 40.0%
!! GAAAACGATGATGGGGTTAT+TGG + chr1_1:70578702-70578721 Msa0040410:CDS 40.0%
!! AAACGATGATGGGGTTATTG+GGG + chr1_1:70578704-70578723 Msa0040410:CDS 40.0%
CCTGACTTTGTCTTCTCATT+GGG - chr1_1:70578750-70578769 None:intergenic 40.0%
CCAATGAGAAGACAAAGTCA+GGG + chr1_1:70578748-70578767 Msa0040410:CDS 40.0%
! GCTGACTTTAAGTAAGCCTT+CGG - chr1_1:70578783-70578802 None:intergenic 40.0%
ATCTGCAGTCCGTCTAAATT+TGG - chr1_1:70578862-70578881 None:intergenic 40.0%
GCAAAGTATGATTCCTGCAA+GGG - chr1_1:70579081-70579100 None:intergenic 40.0%
AGCAAAGTATGATTCCTGCA+AGG - chr1_1:70579082-70579101 None:intergenic 40.0%
! CAAACTTTTACTCAGAGGCA+GGG + chr1_1:70579127-70579146 Msa0040410:CDS 40.0%
CCATGCTATCTGATTCTTTG+GGG - chr1_1:70579262-70579281 None:intergenic 40.0%
CCCATGCTATCTGATTCTTT+GGG - chr1_1:70579263-70579282 None:intergenic 40.0%
CCCAAAGAATCAGATAGCAT+GGG + chr1_1:70579260-70579279 Msa0040410:three_prime_UTR 40.0%
TCCCATGCTATCTGATTCTT+TGG - chr1_1:70579264-70579283 None:intergenic 40.0%
TGCAGAGTCTGTAAAACATG+AGG - chr1_1:70579445-70579464 None:intergenic 40.0%
AGGAAATAAAGGCGAGGATA+TGG - chr1_1:70577499-70577518 None:intergenic 40.0%
GAAGAAAGGAAATAAAGGCG+AGG - chr1_1:70577505-70577524 None:intergenic 40.0%
GAATGTAGTCAACATTCTGG+AGG + chr1_1:70577687-70577706 Msa0040410:five_prime_UTR 40.0%
! TGTTCCATCACAAGTTCTGA+AGG + chr1_1:70577754-70577773 Msa0040410:CDS 40.0%
GATACCTTCAGAACTTGTGA+TGG - chr1_1:70577761-70577780 None:intergenic 40.0%
TATGACACAAAGGCTCTGTT+TGG - chr1_1:70578448-70578467 None:intergenic 40.0%
AATTGAAAGGTTTCTGCGAC+TGG - chr1_1:70578592-70578611 None:intergenic 40.0%
AAGTGGCAACGCTAATTGAA+AGG - chr1_1:70578605-70578624 None:intergenic 40.0%
! AATTAGCGTTGCCACTTCAT+TGG + chr1_1:70578608-70578627 Msa0040410:CDS 40.0%
! TTTGTCAGCTGACTTCTCTT+CGG - chr1_1:70578679-70578698 None:intergenic 40.0%
GACAAAGAGGAAAACGATGA+TGG + chr1_1:70578693-70578712 Msa0040410:CDS 40.0%
CAAAGAGGAAAACGATGATG+GGG + chr1_1:70578695-70578714 Msa0040410:CDS 40.0%
!! GAAAACGATGATGGGGTTAT+TGG + chr1_1:70578702-70578721 Msa0040410:CDS 40.0%
!! AAACGATGATGGGGTTATTG+GGG + chr1_1:70578704-70578723 Msa0040410:CDS 40.0%
CCTGACTTTGTCTTCTCATT+GGG - chr1_1:70578750-70578769 None:intergenic 40.0%
CCAATGAGAAGACAAAGTCA+GGG + chr1_1:70578748-70578767 Msa0040410:CDS 40.0%
! GCTGACTTTAAGTAAGCCTT+CGG - chr1_1:70578783-70578802 None:intergenic 40.0%
ATCTGCAGTCCGTCTAAATT+TGG - chr1_1:70578862-70578881 None:intergenic 40.0%
GCAAAGTATGATTCCTGCAA+GGG - chr1_1:70579081-70579100 None:intergenic 40.0%
AGCAAAGTATGATTCCTGCA+AGG - chr1_1:70579082-70579101 None:intergenic 40.0%
! CAAACTTTTACTCAGAGGCA+GGG + chr1_1:70579127-70579146 Msa0040410:CDS 40.0%
CCATGCTATCTGATTCTTTG+GGG - chr1_1:70579262-70579281 None:intergenic 40.0%
CCCATGCTATCTGATTCTTT+GGG - chr1_1:70579263-70579282 None:intergenic 40.0%
CCCAAAGAATCAGATAGCAT+GGG + chr1_1:70579260-70579279 Msa0040410:three_prime_UTR 40.0%
TCCCATGCTATCTGATTCTT+TGG - chr1_1:70579264-70579283 None:intergenic 40.0%
TGCAGAGTCTGTAAAACATG+AGG - chr1_1:70579445-70579464 None:intergenic 40.0%
ACCTTACCTGTGCAAATGGA+AGG - chr1_1:70577467-70577486 None:intergenic 45.0%
GAGAACCTTACCTGTGCAAA+TGG - chr1_1:70577471-70577490 None:intergenic 45.0%
AAGCTGTGCAGTATTAGACC+TGG - chr1_1:70578556-70578575 None:intergenic 45.0%
AGAGAAGTCAGCTGACAAAG+AGG + chr1_1:70578680-70578699 Msa0040410:CDS 45.0%
CCCAATGAGAAGACAAAGTC+AGG + chr1_1:70578747-70578766 Msa0040410:CDS 45.0%
CCCTGACTTTGTCTTCTCAT+TGG - chr1_1:70578751-70578770 None:intergenic 45.0%
ATGCAGCAAAGGAGTCGATT+CGG + chr1_1:70578880-70578899 Msa0040410:CDS 45.0%
!! TTCGGGAGTATCTTGGTAGT+TGG + chr1_1:70578898-70578917 Msa0040410:CDS 45.0%
! GGAGTATCTTGGTAGTTGGA+GGG + chr1_1:70578902-70578921 Msa0040410:CDS 45.0%
! GAGTATCTTGGTAGTTGGAG+GGG + chr1_1:70578903-70578922 Msa0040410:CDS 45.0%
GCAGGAATCATACTTTGCTC+TGG + chr1_1:70579083-70579102 Msa0040410:intron 45.0%
! GCAAACTTTTACTCAGAGGC+AGG + chr1_1:70579126-70579145 Msa0040410:CDS 45.0%
CCCCAAAGAATCAGATAGCA+TGG + chr1_1:70579259-70579278 Msa0040410:three_prime_UTR 45.0%
! TTTTTATCCGGTGGAGGTGA+GGG - chr1_1:70579385-70579404 None:intergenic 45.0%
! ATTTTTATCCGGTGGAGGTG+AGG - chr1_1:70579386-70579405 None:intergenic 45.0%
TCTACAGTCCTCTCTGTCTT+GGG - chr1_1:70579414-70579433 None:intergenic 45.0%
TTCTACAGTCCTCTCTGTCT+TGG - chr1_1:70579415-70579434 None:intergenic 45.0%
ACCTTACCTGTGCAAATGGA+AGG - chr1_1:70577467-70577486 None:intergenic 45.0%
GAGAACCTTACCTGTGCAAA+TGG - chr1_1:70577471-70577490 None:intergenic 45.0%
AAGCTGTGCAGTATTAGACC+TGG - chr1_1:70578556-70578575 None:intergenic 45.0%
AGAGAAGTCAGCTGACAAAG+AGG + chr1_1:70578680-70578699 Msa0040410:CDS 45.0%
CCCAATGAGAAGACAAAGTC+AGG + chr1_1:70578747-70578766 Msa0040410:CDS 45.0%
CCCTGACTTTGTCTTCTCAT+TGG - chr1_1:70578751-70578770 None:intergenic 45.0%
ATGCAGCAAAGGAGTCGATT+CGG + chr1_1:70578880-70578899 Msa0040410:CDS 45.0%
!! TTCGGGAGTATCTTGGTAGT+TGG + chr1_1:70578898-70578917 Msa0040410:CDS 45.0%
! GGAGTATCTTGGTAGTTGGA+GGG + chr1_1:70578902-70578921 Msa0040410:CDS 45.0%
! GAGTATCTTGGTAGTTGGAG+GGG + chr1_1:70578903-70578922 Msa0040410:CDS 45.0%
GCAGGAATCATACTTTGCTC+TGG + chr1_1:70579083-70579102 Msa0040410:intron 45.0%
! GCAAACTTTTACTCAGAGGC+AGG + chr1_1:70579126-70579145 Msa0040410:CDS 45.0%
CCCCAAAGAATCAGATAGCA+TGG + chr1_1:70579259-70579278 Msa0040410:three_prime_UTR 45.0%
! TTTTTATCCGGTGGAGGTGA+GGG - chr1_1:70579385-70579404 None:intergenic 45.0%
! ATTTTTATCCGGTGGAGGTG+AGG - chr1_1:70579386-70579405 None:intergenic 45.0%
TCTACAGTCCTCTCTGTCTT+GGG - chr1_1:70579414-70579433 None:intergenic 45.0%
TTCTACAGTCCTCTCTGTCT+TGG - chr1_1:70579415-70579434 None:intergenic 45.0%
GCCTTCCATTTGCACAGGTA+AGG + chr1_1:70577463-70577482 Msa0040410:intron 50.0%
TCTTCGGCCCATGCCATTAA+TGG - chr1_1:70578663-70578682 None:intergenic 50.0%
! GTCAGGGAAAGTTTTGCCGA+AGG + chr1_1:70578764-70578783 Msa0040410:CDS 50.0%
! TGCAGCAAAGGAGTCGATTC+GGG + chr1_1:70578881-70578900 Msa0040410:CDS 50.0%
!! GAGTCGATTCGGGAGTATCT+TGG + chr1_1:70578891-70578910 Msa0040410:CDS 50.0%
!! GGGAGTATCTTGGTAGTTGG+AGG + chr1_1:70578901-70578920 Msa0040410:CDS 50.0%
! GCTTTGGATTGATCCCTTGC+AGG + chr1_1:70579065-70579084 Msa0040410:intron 50.0%
ACTTAACTTCCGTCGGCAGT+GGG - chr1_1:70579161-70579180 None:intergenic 50.0%
TAATTACCCCTCACCTCCAC+CGG + chr1_1:70579375-70579394 Msa0040410:three_prime_UTR 50.0%
! TTTTATCCGGTGGAGGTGAG+GGG - chr1_1:70579384-70579403 None:intergenic 50.0%
GCCTTCCATTTGCACAGGTA+AGG + chr1_1:70577463-70577482 Msa0040410:intron 50.0%
TCTTCGGCCCATGCCATTAA+TGG - chr1_1:70578663-70578682 None:intergenic 50.0%
! GTCAGGGAAAGTTTTGCCGA+AGG + chr1_1:70578764-70578783 Msa0040410:CDS 50.0%
! TGCAGCAAAGGAGTCGATTC+GGG + chr1_1:70578881-70578900 Msa0040410:CDS 50.0%
!! GAGTCGATTCGGGAGTATCT+TGG + chr1_1:70578891-70578910 Msa0040410:CDS 50.0%
!! GGGAGTATCTTGGTAGTTGG+AGG + chr1_1:70578901-70578920 Msa0040410:CDS 50.0%
! GCTTTGGATTGATCCCTTGC+AGG + chr1_1:70579065-70579084 Msa0040410:intron 50.0%
ACTTAACTTCCGTCGGCAGT+GGG - chr1_1:70579161-70579180 None:intergenic 50.0%
TAATTACCCCTCACCTCCAC+CGG + chr1_1:70579375-70579394 Msa0040410:three_prime_UTR 50.0%
! TTTTATCCGGTGGAGGTGAG+GGG - chr1_1:70579384-70579403 None:intergenic 50.0%
TCGGAGCCTTCCATTTGCAC+AGG + chr1_1:70577458-70577477 Msa0040410:five_prime_UTR 55.0%
! ACGGACTGCAGATGCAGCAA+AGG + chr1_1:70578869-70578888 Msa0040410:CDS 55.0%
CTTAACTTCCGTCGGCAGTG+GGG - chr1_1:70579160-70579179 None:intergenic 55.0%
GACTTAACTTCCGTCGGCAG+TGG - chr1_1:70579162-70579181 None:intergenic 55.0%
TCGGAGCCTTCCATTTGCAC+AGG + chr1_1:70577458-70577477 Msa0040410:five_prime_UTR 55.0%
! ACGGACTGCAGATGCAGCAA+AGG + chr1_1:70578869-70578888 Msa0040410:CDS 55.0%
CTTAACTTCCGTCGGCAGTG+GGG - chr1_1:70579160-70579179 None:intergenic 55.0%
GACTTAACTTCCGTCGGCAG+TGG - chr1_1:70579162-70579181 None:intergenic 55.0%
CTGCGACTGGAAGCTTCGAG+AGG - chr1_1:70578579-70578598 None:intergenic 60.0%
CTGCGACTGGAAGCTTCGAG+AGG - chr1_1:70578579-70578598 None:intergenic 60.0%
GCCATCAGCCCCACTGCCGA+CGG + chr1_1:70579149-70579168 Msa0040410:CDS 70.0%
TCCGTCGGCAGTGGGGCTGA+TGG - chr1_1:70579153-70579172 None:intergenic 70.0%
GCCATCAGCCCCACTGCCGA+CGG + chr1_1:70579149-70579168 Msa0040410:CDS 70.0%
TCCGTCGGCAGTGGGGCTGA+TGG - chr1_1:70579153-70579172 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 70577444 70579645 70577444 ID=Msa0040410;Name=Msa0040410
chr1_1 mRNA 70577444 70579645 70577444 ID=Msa0040410-mRNA-1;Parent=Msa0040410;Name=Msa0040410-mRNA-1;_AED=0.02;_eAED=0.02;_QI=120|1|1|1|0.66|0.5|4|421|197
chr1_1 exon 70577444 70577479 70577444 ID=Msa0040410-mRNA-1:exon:23217;Parent=Msa0040410-mRNA-1
chr1_1 exon 70577643 70577775 70577643 ID=Msa0040410-mRNA-1:exon:23218;Parent=Msa0040410-mRNA-1
chr1_1 exon 70578541 70578947 70578541 ID=Msa0040410-mRNA-1:exon:23219;Parent=Msa0040410-mRNA-1
chr1_1 exon 70579087 70579645 70579087 ID=Msa0040410-mRNA-1:exon:23220;Parent=Msa0040410-mRNA-1
chr1_1 five_prime_UTR 70577444 70577479 70577444 ID=Msa0040410-mRNA-1:five_prime_utr;Parent=Msa0040410-mRNA-1
chr1_1 five_prime_UTR 70577643 70577726 70577643 ID=Msa0040410-mRNA-1:five_prime_utr;Parent=Msa0040410-mRNA-1
chr1_1 CDS 70577727 70577775 70577727 ID=Msa0040410-mRNA-1:cds;Parent=Msa0040410-mRNA-1
chr1_1 CDS 70578541 70578947 70578541 ID=Msa0040410-mRNA-1:cds;Parent=Msa0040410-mRNA-1
chr1_1 CDS 70579087 70579224 70579087 ID=Msa0040410-mRNA-1:cds;Parent=Msa0040410-mRNA-1
chr1_1 three_prime_UTR 70579225 70579645 70579225 ID=Msa0040410-mRNA-1:three_prime_utr;Parent=Msa0040410-mRNA-1
Gene Sequence

>Msa0040410

ATGGCAGCTACCTTTTCAGCTATTATGTGTTCCATCACAAGTTCTGAAGATAAACTGCAATCCAGGTCTAATACTGCACAGCTTCCTCTCGAAGCTTCCAGTCGCAGAAACCTTTCAATTAGCGTTGCCACTTCATTGGTTACAATAACATGTGGTTACAGTTTATCACCATTAATGGCATGGGCCGAAGAGAAGTCAGCTGACAAAGAGGAAAACGATGATGGGGTTATTGGGGCCGTCAAATCGTTATTTGATCCCAATGAGAAGACAAAGTCAGGGAAAGTTTTGCCGAAGGCTTACTTAAAGTCAGCAAGAGAGGTAGTGAAGACACTGCGTGAATCTTTAAATGAAGACCCTGATGACAATGCCAAATTTAGACGGACTGCAGATGCAGCAAAGGAGTCGATTCGGGAGTATCTTGGTAGTTGGAGGGGAAACCAGACTGTTTCTCAAGAAGAATCATACTTTGCTCTGGTAAAAGCAGTAAGATCTTTGGCAAACTTTTACTCAGAGGCAGGGCCATCAGCCCCACTGCCGACGGAAGTTAAGTCTGAAATATTAAATTATCTGAATACCGCTGAAGAATTTTTATAG

Protein sequence

>Msa0040410

MAATFSAIMCSITSSEDKLQSRSNTAQLPLEASSRRNLSISVATSLVTITCGYSLSPLMAWAEEKSADKEENDDGVIGAVKSLFDPNEKTKSGKVLPKAYLKSAREVVKTLRESLNEDPDDNAKFRRTADAAKESIREYLGSWRGNQTVSQEESYFALVKAVRSLANFYSEAGPSAPLPTEVKSEILNYLNTAEEFL*