Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370620 | XP_013450218.1 | 97.936 | 436 | 9 | 0 | 12 | 447 | 4 | 439 | 0.0 | 872 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370620 | sp|Q8RX01|Y3567_ARATH | 63.256 | 430 | 151 | 5 | 22 | 446 | 14 | 441 | 0.0 | 525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370620 | A0A072U4G5 | 97.936 | 436 | 9 | 0 | 12 | 447 | 4 | 439 | 0.0 | 872 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004060 | Msa1370620 | 0.805148 | 1.535172e-49 | -8.615850e-47 |
| Msa0031820 | Msa1370620 | 0.814102 | 1.828112e-51 | -8.615850e-47 |
| Msa0032320 | Msa1370620 | 0.803333 | 3.664551e-49 | -8.615850e-47 |
| Msa0046760 | Msa1370620 | 0.831640 | 1.488926e-55 | -8.615850e-47 |
| Msa0099510 | Msa1370620 | 0.812231 | 4.705033e-51 | -8.615850e-47 |
| Msa0100800 | Msa1370620 | 0.800753 | 1.243282e-48 | -8.615850e-47 |
| Msa1370620 | Msa1375680 | 0.826264 | 2.984021e-54 | -8.615850e-47 |
| Msa1370620 | Msa1376090 | -0.800905 | 1.157329e-48 | -8.615850e-47 |
| Msa1370620 | Msa1384870 | 0.801887 | 7.283100e-49 | -8.615850e-47 |
| Msa1370620 | Msa1424780 | 0.820460 | 6.778829e-53 | -8.615850e-47 |
| Msa1370620 | Msa1447110 | 0.801068 | 1.071960e-48 | -8.615850e-47 |
| Msa1370620 | Msa1449910 | 0.824542 | 7.628206e-54 | -8.615850e-47 |
| Msa1370620 | Msa1466090 | 0.808540 | 2.946134e-50 | -8.615850e-47 |
| Msa0603670 | Msa1370620 | 0.808106 | 3.645224e-50 | -8.615850e-47 |
| Msa0610500 | Msa1370620 | 0.811629 | 6.361774e-51 | -8.615850e-47 |
| Msa0619180 | Msa1370620 | 0.803196 | 3.912393e-49 | -8.615850e-47 |
| Msa0619920 | Msa1370620 | 0.808400 | 3.155311e-50 | -8.615850e-47 |
| Msa0626680 | Msa1370620 | 0.843034 | 1.795975e-58 | -8.615850e-47 |
| Msa0629650 | Msa1370620 | 0.802500 | 5.448685e-49 | -8.615850e-47 |
| Msa0641140 | Msa1370620 | 0.807669 | 4.515830e-50 | -8.615850e-47 |
| Msa0646130 | Msa1370620 | 0.804903 | 1.727918e-49 | -8.615850e-47 |
| Msa0651150 | Msa1370620 | 0.817079 | 3.971565e-52 | -8.615850e-47 |
| Msa0664760 | Msa1370620 | 0.837939 | 3.865701e-57 | -8.615850e-47 |
| Msa0679700 | Msa1370620 | 0.805657 | 1.200687e-49 | -8.615850e-47 |
| Msa0744090 | Msa1370620 | 0.805133 | 1.546394e-49 | -8.615850e-47 |
| Msa0760380 | Msa1370620 | 0.807312 | 5.375713e-50 | -8.615850e-47 |
| Msa0800270 | Msa1370620 | 0.818468 | 1.929280e-52 | -8.615850e-47 |
| Msa0825280 | Msa1370620 | 0.807447 | 5.033255e-50 | -8.615850e-47 |
| Msa0826220 | Msa1370620 | 0.814715 | 1.337798e-51 | -8.615850e-47 |
| Msa0826760 | Msa1370620 | 0.808331 | 3.264490e-50 | -8.615850e-47 |
| Msa0837650 | Msa1370620 | 0.815658 | 8.257230e-52 | -8.615850e-47 |
| Msa0838260 | Msa1370620 | 0.821209 | 4.560087e-53 | -8.615850e-47 |
| Msa0126770 | Msa1370620 | 0.836687 | 8.083990e-57 | -8.615850e-47 |
| Msa0135420 | Msa1370620 | 0.808928 | 2.433571e-50 | -8.615850e-47 |
| Msa0136100 | Msa1370620 | 0.801285 | 9.678572e-49 | -8.615850e-47 |
| Msa0146770 | Msa1370620 | 0.809745 | 1.625445e-50 | -8.615850e-47 |
| Msa0148120 | Msa1370620 | 0.802808 | 4.705219e-49 | -8.615850e-47 |
| Msa0154440 | Msa1370620 | 0.803649 | 3.151282e-49 | -8.615850e-47 |
| Msa0158360 | Msa1370620 | 0.800366 | 1.490798e-48 | -8.615850e-47 |
| Msa0165440 | Msa1370620 | 0.810997 | 8.725561e-51 | -8.615850e-47 |
| Msa0171850 | Msa1370620 | 0.830564 | 2.735511e-55 | -8.615850e-47 |
| Msa0177700 | Msa1370620 | -0.808690 | 2.736514e-50 | -8.615850e-47 |
| Msa0186770 | Msa1370620 | 0.800079 | 1.705361e-48 | -8.615850e-47 |
| Msa0188730 | Msa1370620 | -0.806534 | 7.852774e-50 | -8.615850e-47 |
| Msa0198530 | Msa1370620 | 0.801175 | 1.019422e-48 | -8.615850e-47 |
| Msa0208810 | Msa1370620 | 0.822714 | 2.043619e-53 | -8.615850e-47 |
| Msa0219250 | Msa1370620 | -0.825161 | 5.451097e-54 | -8.615850e-47 |
| Msa0229170 | Msa1370620 | 0.804628 | 1.971764e-49 | -8.615850e-47 |
| Msa0231660 | Msa1370620 | 0.807294 | 5.423745e-50 | -8.615850e-47 |
| Msa0235120 | Msa1370620 | 0.828236 | 1.005662e-54 | -8.615850e-47 |
| Msa1253810 | Msa1370620 | 0.806898 | 6.578091e-50 | -8.615850e-47 |
| Msa1286610 | Msa1370620 | 0.801276 | 9.717735e-49 | -8.615850e-47 |
| Msa1343420 | Msa1370620 | 0.824885 | 6.334387e-54 | -8.615850e-47 |
| Msa0428050 | Msa1370620 | 0.826588 | 2.499005e-54 | -8.615850e-47 |
| Msa0428240 | Msa1370620 | 0.840131 | 1.046112e-57 | -8.615850e-47 |
| Msa0437510 | Msa1370620 | 0.814482 | 1.506104e-51 | -8.615850e-47 |
| Msa0451070 | Msa1370620 | 0.811735 | 6.033631e-51 | -8.615850e-47 |
| Msa0474390 | Msa1370620 | 0.825907 | 3.629455e-54 | -8.615850e-47 |
| Msa0474590 | Msa1370620 | 0.869293 | 3.452615e-66 | -8.615850e-47 |
| Msa0479200 | Msa1370620 | 0.811449 | 6.961746e-51 | -8.615850e-47 |
| Msa0481750 | Msa1370620 | 0.819210 | 1.308893e-52 | -8.615850e-47 |
| Msa0994390 | Msa1370620 | 0.823852 | 1.107860e-53 | -8.615850e-47 |
| Msa1001350 | Msa1370620 | 0.813527 | 2.447420e-51 | -8.615850e-47 |
| Msa1029970 | Msa1370620 | 0.803531 | 3.334599e-49 | -8.615850e-47 |
| Msa1040800 | Msa1370620 | 0.813439 | 2.558068e-51 | -8.615850e-47 |
| Msa1040840 | Msa1370620 | 0.824083 | 9.781869e-54 | -8.615850e-47 |
| Msa1041520 | Msa1370620 | 0.826182 | 3.122120e-54 | -8.615850e-47 |
| Msa1080800 | Msa1370620 | 0.932562 | 7.064556e-95 | -8.615850e-47 |
| Msa1081560 | Msa1370620 | 0.805629 | 1.217062e-49 | -8.615850e-47 |
| Msa1083880 | Msa1370620 | 0.803136 | 4.025026e-49 | -8.615850e-47 |
| Msa1093330 | Msa1370620 | 0.814711 | 1.340603e-51 | -8.615850e-47 |
| Msa0241470 | Msa1370620 | 0.805535 | 1.273699e-49 | -8.615850e-47 |
| Msa0258880 | Msa1370620 | -0.824390 | 8.283515e-54 | -8.615850e-47 |
| Msa0265380 | Msa1370620 | 0.805324 | 1.410048e-49 | -8.615850e-47 |
| Msa0268090 | Msa1370620 | 0.834090 | 3.663331e-56 | -8.615850e-47 |
| Msa0270170 | Msa1370620 | -0.804396 | 2.203868e-49 | -8.615850e-47 |
| Msa0281430 | Msa1370620 | 0.813215 | 2.865210e-51 | -8.615850e-47 |
| Msa0288730 | Msa1370620 | 0.838724 | 2.425997e-57 | -8.615850e-47 |
| Msa0303360 | Msa1370620 | 0.813968 | 1.956381e-51 | -8.615850e-47 |
| Msa0313740 | Msa1370620 | 0.839787 | 1.286007e-57 | -8.615850e-47 |
| Msa1118940 | Msa1370620 | 0.990654 | 1.139474e-183 | -8.615850e-47 |
| Msa1126450 | Msa1370620 | 0.820279 | 7.459246e-53 | -8.615850e-47 |
| Msa1127130 | Msa1370620 | 0.810951 | 8.926777e-51 | -8.615850e-47 |
| Msa1162830 | Msa1370620 | 0.812619 | 3.870376e-51 | -8.615850e-47 |
| Msa1163540 | Msa1370620 | 0.816669 | 4.907788e-52 | -8.615850e-47 |
| Msa1166410 | Msa1370620 | 0.810623 | 1.051436e-50 | -8.615850e-47 |
| Msa1219810 | Msa1370620 | 0.836996 | 6.743527e-57 | -8.615850e-47 |
| Msa1223330 | Msa1370620 | 0.807376 | 5.209629e-50 | -8.615850e-47 |
| Msa0517840 | Msa1370620 | 0.805081 | 1.585351e-49 | -8.615850e-47 |
| Msa0518810 | Msa1370620 | 0.831043 | 2.087662e-55 | -8.615850e-47 |
| Msa0519130 | Msa1370620 | 0.836889 | 7.183179e-57 | -8.615850e-47 |
| Msa0527910 | Msa1370620 | 0.813272 | 2.784282e-51 | -8.615850e-47 |
| Msa0530100 | Msa1370620 | 0.802497 | 5.455202e-49 | -8.615850e-47 |
| Msa0532540 | Msa1370620 | 0.806561 | 7.747765e-50 | -8.615850e-47 |
| Msa0536790 | Msa1370620 | 0.819680 | 1.022481e-52 | -8.615850e-47 |
| Msa0542160 | Msa1370620 | 0.836584 | 8.587836e-57 | -8.615850e-47 |
| Msa0545060 | Msa1370620 | 0.829375 | 5.333446e-55 | -8.615850e-47 |
| Msa0546570 | Msa1370620 | 0.802788 | 4.751085e-49 | -8.615850e-47 |
| Msa0549590 | Msa1370620 | 0.809414 | 1.914800e-50 | -8.615850e-47 |
| Msa0578090 | Msa1370620 | 0.820911 | 5.339947e-53 | -8.615850e-47 |
| Msa0586850 | Msa1370620 | 0.839012 | 2.043121e-57 | -8.615850e-47 |
| Msa0589390 | Msa1370620 | 0.816512 | 5.322347e-52 | -8.615850e-47 |
| Msa0857370 | Msa1370620 | 0.805115 | 1.559628e-49 | -8.615850e-47 |
| Msa0865890 | Msa1370620 | 0.837394 | 5.334418e-57 | -8.615850e-47 |
| Msa0895310 | Msa1370620 | 0.827953 | 1.176554e-54 | -8.615850e-47 |
| Msa0901320 | Msa1370620 | 0.810153 | 1.327781e-50 | -8.615850e-47 |
| Msa0922030 | Msa1370620 | 0.804649 | 1.951840e-49 | -8.615850e-47 |
| Msa0931720 | Msa1370620 | 0.811564 | 6.573790e-51 | -8.615850e-47 |
| Msa0947530 | Msa1370620 | -0.838235 | 3.243262e-57 | -8.615850e-47 |
| Msa0955190 | Msa1370620 | 0.802914 | 4.474826e-49 | -8.615850e-47 |
| Msa0972590 | Msa1370620 | 0.803483 | 3.411413e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370620 | MtrunA17_Chr7g0267491 | 97.936 | 436 | 9 | 0 | 12 | 447 | 4 | 439 | 0.0 | 872 |
| Msa1370620 | MtrunA17_Chr3g0080931 | 40.529 | 227 | 131 | 3 | 210 | 436 | 1 | 223 | 2.56e-54 | 181 |
| Msa1370620 | MtrunA17_Chr4g0034941 | 24.130 | 460 | 261 | 17 | 21 | 429 | 50 | 472 | 3.23e-17 | 84.0 |
| Msa1370620 | MtrunA17_Chr8g0387311 | 23.349 | 424 | 272 | 14 | 22 | 429 | 185 | 571 | 1.16e-16 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370620 | AT3G05675.2 | 63.256 | 430 | 151 | 5 | 22 | 446 | 14 | 441 | 0.0 | 525 |
| Msa1370620 | AT3G05675.1 | 63.256 | 430 | 151 | 5 | 22 | 446 | 14 | 441 | 0.0 | 525 |
| Msa1370620 | AT3G05675.3 | 63.256 | 430 | 151 | 5 | 22 | 446 | 14 | 441 | 0.0 | 525 |
| Msa1370620 | AT4G10800.1 | 41.852 | 270 | 139 | 6 | 175 | 436 | 10 | 269 | 3.04e-62 | 203 |
| Msa1370620 | AT4G10800.2 | 41.767 | 249 | 132 | 5 | 191 | 436 | 8 | 246 | 1.22e-57 | 191 |
| Msa1370620 | AT1G63850.1 | 23.341 | 437 | 270 | 15 | 22 | 435 | 135 | 529 | 3.24e-17 | 84.3 |
Find 131 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATACGTGCATATGTCATTT+TGG | 0.220195 | tig0019132:-26629 | None:intergenic |
| AATTTAAACTTCAATCTTCT+TGG | 0.224181 | tig0019132:-26287 | None:intergenic |
| CCTATACTAATCGACGATTT+AGG | 0.238185 | tig0019132:+26038 | Msa1370620:three_prime_UTR |
| AGATATCATTAAGGTGTTTC+TGG | 0.239583 | tig0019132:+26425 | Msa1370620:three_prime_UTR |
| TATGAAGGTAAAAGATAAAA+TGG | 0.267207 | tig0019132:+26216 | Msa1370620:three_prime_UTR |
| GAGAAGGATATCTGTGTAAT+TGG | 0.301905 | tig0019132:+24454 | Msa1370620:CDS |
| ATCATTCTTGCATTGCCATC+AGG | 0.346115 | tig0019132:+25579 | Msa1370620:CDS |
| CCATGACAAATCAGTCAAAT+AGG | 0.348445 | tig0019132:-25205 | None:intergenic |
| TTACATTGATTTAATGTGAA+TGG | 0.362563 | tig0019132:-25913 | None:intergenic |
| ACCGAGACGTTCCCTACTTC+AGG | 0.368218 | tig0019132:-25177 | None:intergenic |
| ATAGAGGGTAGATATCATTA+AGG | 0.372203 | tig0019132:+26416 | Msa1370620:three_prime_UTR |
| TTTGAAAATTGTACCGAGAA+TGG | 0.375149 | tig0019132:+24861 | Msa1370620:CDS |
| GGATGCTGCGTTGCTTAAAA+TGG | 0.377981 | tig0019132:+25515 | Msa1370620:CDS |
| ATATGTTTCTGATAGCTAAC+TGG | 0.387088 | tig0019132:-24927 | None:intergenic |
| TGACTGAGGCATTCGAAGTA+TGG | 0.393117 | tig0019132:+25661 | Msa1370620:CDS |
| TGCATTGCCATCAGGGGATC+AGG | 0.394170 | tig0019132:+25587 | Msa1370620:CDS |
| CTGATAGCTAACTGGTTAAC+CGG | 0.398560 | tig0019132:-24919 | None:intergenic |
| GGTTGGAAAACGAGAATATA+CGG | 0.406032 | tig0019132:+25628 | Msa1370620:CDS |
| GCCAACTGCGAAACGTCTTA+AGG | 0.411212 | tig0019132:+25422 | Msa1370620:CDS |
| TTGAAAATTGTACCGAGAAT+GGG | 0.421104 | tig0019132:+24862 | Msa1370620:CDS |
| TTGGGAATAGGAAGAATATA+TGG | 0.421353 | tig0019132:+23223 | None:intergenic |
| CTGATCGGCTATCTGAGAAT+TGG | 0.421865 | tig0019132:+24584 | Msa1370620:CDS |
| CGCAAGAAGGTCGAGATGAT+TGG | 0.428744 | tig0019132:+24515 | Msa1370620:CDS |
| GGCAGAATCAATCACTGGTT+TGG | 0.436374 | tig0019132:-25478 | None:intergenic |
| GAGAAGACTCTCATTGTTAG+AGG | 0.440113 | tig0019132:+25707 | Msa1370620:CDS |
| TGGCGAAATGTGGCAATCTC+TGG | 0.442679 | tig0019132:+25539 | Msa1370620:CDS |
| AACCCTCCACGGTGTGTTGT+GGG | 0.456513 | tig0019132:-26546 | None:intergenic |
| TTGCCATCAGGGGATCAGGC+AGG | 0.460011 | tig0019132:+25591 | Msa1370620:CDS |
| AACCTTTGATGTTACCTCAA+TGG | 0.460071 | tig0019132:-25367 | None:intergenic |
| TGGCCAACTTGTCAGATACT+AGG | 0.460340 | tig0019132:+24604 | Msa1370620:CDS |
| GATTTCAGATCATTCATTGC+CGG | 0.460656 | tig0019132:-24988 | None:intergenic |
| CAAAAGGTAATTTATGTAGC+TGG | 0.466727 | tig0019132:+26329 | Msa1370620:three_prime_UTR |
| TGATGATAATATAAAATATG+AGG | 0.467539 | tig0019132:+25074 | Msa1370620:CDS |
| TCGAATGCCTCAGTCAGGTC+TGG | 0.468523 | tig0019132:-25654 | None:intergenic |
| TCAGGACTAGCTTTGCAACT+TGG | 0.470320 | tig0019132:-26667 | None:intergenic |
| CTTCTGTACGTTGTGGTCGA+TGG | 0.471656 | tig0019132:+24694 | Msa1370620:CDS |
| AAGAATGATAGAGACAAAAC+TGG | 0.473112 | tig0019132:-25565 | None:intergenic |
| CCTATTTGACTGATTTGTCA+TGG | 0.473152 | tig0019132:+25205 | Msa1370620:CDS |
| TTATGGCTTACAGCTTGTGC+TGG | 0.477488 | tig0019132:-23266 | None:intergenic |
| CGTAAGCATTATGCTGTGTT+GGG | 0.478656 | tig0019132:-26090 | None:intergenic |
| CCTAAATCGTCGATTAGTAT+AGG | 0.482262 | tig0019132:-26038 | None:intergenic |
| GCAGAATCACTTCCTGAAGT+AGG | 0.485646 | tig0019132:+25165 | Msa1370620:CDS |
| ACCTTAAGACGTTTCGCAGT+TGG | 0.488387 | tig0019132:-25423 | None:intergenic |
| TGCTACATCGTCGCCTCCAC+CGG | 0.488415 | tig0019132:+24969 | Msa1370620:CDS |
| CTATTTGACTGATTTGTCAT+GGG | 0.491380 | tig0019132:+25206 | Msa1370620:CDS |
| AGATCATTCATTGCCGGTGG+AGG | 0.499953 | tig0019132:-24982 | None:intergenic |
| ATGGTTCAGTTGATGATTTG+TGG | 0.499974 | tig0019132:+24713 | Msa1370620:CDS |
| TATCATCAGCGATCAACAAA+GGG | 0.504276 | tig0019132:-25059 | None:intergenic |
| GGTTTGGTAACCCTCACAAA+TGG | 0.504480 | tig0019132:-25462 | None:intergenic |
| TATCCTAGCTAGACTTCAAC+CGG | 0.505035 | tig0019132:+24900 | Msa1370620:CDS |
| TTTCTTGGTTTGAATTTCGA+AGG | 0.505329 | tig0019132:+26184 | Msa1370620:three_prime_UTR |
| ACGTAAGCATTATGCTGTGT+TGG | 0.505379 | tig0019132:-26091 | None:intergenic |
| CTCTTGACAGGAAAGGAGAA+AGG | 0.508362 | tig0019132:+26137 | Msa1370620:three_prime_UTR |
| AATTAAGGATAAGGAAGAGA+AGG | 0.512406 | tig0019132:+24438 | Msa1370620:intron |
| TGATTTAATGTGAATGGAGA+TGG | 0.514716 | tig0019132:-25907 | None:intergenic |
| GAGTCTTCTCCTTGCAACCT+TGG | 0.515051 | tig0019132:-25694 | None:intergenic |
| AATAAAACATGTGATTAGTG+TGG | 0.516680 | tig0019132:+26788 | Msa1370620:three_prime_UTR |
| TCAGTTGATGATTTGTGGCA+TGG | 0.516798 | tig0019132:+24718 | Msa1370620:CDS |
| CACAACACACCGTGGAGGGT+TGG | 0.519921 | tig0019132:+26548 | Msa1370620:three_prime_UTR |
| ATACTTCGAATGCCTCAGTC+AGG | 0.520495 | tig0019132:-25659 | None:intergenic |
| TCAGCTTGTAATCCCATTCT+CGG | 0.521850 | tig0019132:-24874 | None:intergenic |
| CGAAGGAGCATCATATATGA+AGG | 0.525772 | tig0019132:+26201 | Msa1370620:three_prime_UTR |
| TGCTGCGTGTGTGAAATACT+TGG | 0.525981 | tig0019132:+24801 | Msa1370620:CDS |
| GTCACAATGTAACCTGCAAA+AGG | 0.528041 | tig0019132:+26313 | Msa1370620:three_prime_UTR |
| ATGGGAAGAGAGTGAAGAGG+AGG | 0.529090 | tig0019132:+24834 | Msa1370620:CDS |
| TCATTCTTGCATTGCCATCA+GGG | 0.532419 | tig0019132:+25580 | Msa1370620:CDS |
| TGCCATCAGGGGATCAGGCA+GGG | 0.532443 | tig0019132:+25592 | Msa1370620:CDS |
| CAGAATCACTTCCTGAAGTA+GGG | 0.535661 | tig0019132:+25166 | Msa1370620:CDS |
| ATAAAACATGTGATTAGTGT+GGG | 0.540166 | tig0019132:+26789 | Msa1370620:three_prime_UTR |
| GACATATGCACGTATTTGCA+TGG | 0.540818 | tig0019132:+26636 | Msa1370620:three_prime_UTR |
| AATTGTGGCTTCCATTTGTG+AGG | 0.547715 | tig0019132:+25451 | Msa1370620:CDS |
| TATCAGAAACATATTTCTCT+CGG | 0.549893 | tig0019132:+24936 | Msa1370620:CDS |
| ACTGTACGCAGCAGAGATAG+AGG | 0.552451 | tig0019132:+26400 | Msa1370620:three_prime_UTR |
| TGAGTACTGGTTTGATGCAT+CGG | 0.555681 | tig0019132:+25272 | Msa1370620:CDS |
| GATAAAGTTGCGAGCCATTG+AGG | 0.559973 | tig0019132:+25353 | Msa1370620:CDS |
| GTTATAGATCCAAGGTTGCA+AGG | 0.561101 | tig0019132:+25685 | Msa1370620:CDS |
| TGAAGAAACTCAAGCTATAG+TGG | 0.563243 | tig0019132:-26520 | None:intergenic |
| GAACCTAGTATCTGACAAGT+TGG | 0.564864 | tig0019132:-24607 | None:intergenic |
| CCACAACATCACTAGTTGAT+CGG | 0.567045 | tig0019132:-24480 | None:intergenic |
| TAACCGGTTGAAGTCTAGCT+AGG | 0.567773 | tig0019132:-24903 | None:intergenic |
| GGGAACACATCAAATTGAGC+GGG | 0.568489 | tig0019132:-25761 | None:intergenic |
| TACTAATCGACGATTTAGGT+TGG | 0.572152 | tig0019132:+26042 | Msa1370620:three_prime_UTR |
| GTCATGGCAGAATCAATCAC+TGG | 0.572683 | tig0019132:-25483 | None:intergenic |
| TTCAGATCATTCATTGCCGG+TGG | 0.572901 | tig0019132:-24985 | None:intergenic |
| TATCAGCTTCCAACCCTCCA+CGG | 0.575299 | tig0019132:-26557 | None:intergenic |
| AGCCATTGAGGTAACATCAA+AGG | 0.577241 | tig0019132:+25365 | Msa1370620:CDS |
| AGCTGTTATTTGTTTGTGTG+AGG | 0.580734 | tig0019132:+26240 | Msa1370620:three_prime_UTR |
| TATCATTAAGGTGTTTCTGG+TGG | 0.581038 | tig0019132:+26428 | Msa1370620:three_prime_UTR |
| TAACACAAGGAGCTGTATGT+AGG | 0.585319 | tig0019132:+26453 | Msa1370620:three_prime_UTR |
| GTGATATTCTCTCCTTCACT+AGG | 0.587054 | tig0019132:-25827 | None:intergenic |
| CATGGTGTTAGAAATGCTCT+TGG | 0.588296 | tig0019132:+24736 | Msa1370620:CDS |
| GGTTGAAGTCTAGCTAGGAT+AGG | 0.590203 | tig0019132:-24898 | None:intergenic |
| CATTCTTGCATTGCCATCAG+GGG | 0.594583 | tig0019132:+25581 | Msa1370620:CDS |
| AGCCCTGCCTGATCCCCTGA+TGG | 0.596176 | tig0019132:-25594 | None:intergenic |
| TTATCATCAGCGATCAACAA+AGG | 0.597255 | tig0019132:-25060 | None:intergenic |
| GTGAGGCTACGCACGCAAGA+AGG | 0.597661 | tig0019132:+24502 | Msa1370620:CDS |
| TCTATCTCTGCTGCGTACAG+TGG | 0.602135 | tig0019132:-26398 | None:intergenic |
| TACCCACAACACACCGTGGA+GGG | 0.603325 | tig0019132:+26544 | Msa1370620:three_prime_UTR |
| AGTATGGTGTTATAGATCCA+AGG | 0.604280 | tig0019132:+25677 | Msa1370620:CDS |
| CTAAACTTCATGCCTAGTGA+AGG | 0.604938 | tig0019132:+25815 | Msa1370620:three_prime_UTR |
| AATACTTGGAAGCAATGACA+TGG | 0.605753 | tig0019132:+24815 | Msa1370620:CDS |
| TATTCGACTTCTGTACGTTG+TGG | 0.606306 | tig0019132:+24687 | Msa1370620:CDS |
| CTGTACGCAGCAGAGATAGA+GGG | 0.613915 | tig0019132:+26401 | Msa1370620:three_prime_UTR |
| CGGGAACACATCAAATTGAG+CGG | 0.618971 | tig0019132:-25762 | None:intergenic |
| GCTGCGTTGCTTAAAATGGA+TGG | 0.619104 | tig0019132:+25519 | Msa1370620:CDS |
| GAAGTCGAATAAAGTTTACA+TGG | 0.621468 | tig0019132:-24675 | None:intergenic |
| ACTGGTTTGATGCATCGGAA+AGG | 0.623195 | tig0019132:+25277 | Msa1370620:CDS |
| AGGAAGAATATATGGTACTG+TGG | 0.623222 | tig0019132:+23231 | Msa1370620:exon |
| TATCAATGAGTTGTTAAACC+CGG | 0.624215 | tig0019132:-25124 | None:intergenic |
| CCGATCAACTAGTGATGTTG+TGG | 0.627570 | tig0019132:+24480 | Msa1370620:CDS |
| AGCATCCTCACAATTCGTCA+TGG | 0.633088 | tig0019132:-25499 | None:intergenic |
| TCCTGAAGTAGGGAACGTCT+CGG | 0.633628 | tig0019132:+25176 | Msa1370620:CDS |
| GAGGCGACGATGTAGCAAAA+CGG | 0.638217 | tig0019132:-24963 | None:intergenic |
| TCATTGATACATTTACTCTG+TGG | 0.641194 | tig0019132:+25138 | Msa1370620:CDS |
| ATTGTGGCTTCCATTTGTGA+GGG | 0.644880 | tig0019132:+25452 | Msa1370620:CDS |
| TTAGGTTGGTGAGTGTGACA+TGG | 0.646783 | tig0019132:+26056 | Msa1370620:three_prime_UTR |
| AGCATGTCATGACACAGTAA+CGG | 0.650944 | tig0019132:+25733 | Msa1370620:CDS |
| TACTTCAGGAAGTGATTCTG+CGG | 0.651160 | tig0019132:-25163 | None:intergenic |
| TTAAAATGGATGGCGAAATG+TGG | 0.673164 | tig0019132:+25529 | Msa1370620:CDS |
| ATACTTGGAAGCAATGACAT+GGG | 0.673251 | tig0019132:+24816 | Msa1370620:CDS |
| CTACCCACAACACACCGTGG+AGG | 0.674683 | tig0019132:+26543 | Msa1370620:three_prime_UTR |
| GTTTCTGGTGGAATAACACA+AGG | 0.674838 | tig0019132:+26440 | Msa1370620:three_prime_UTR |
| TGCTTACGTATGATGTCCTG+TGG | 0.678113 | tig0019132:+26105 | Msa1370620:three_prime_UTR |
| GACATGGGAAGAGAGTGAAG+AGG | 0.683633 | tig0019132:+24831 | Msa1370620:CDS |
| AAAGTACTTGAACTTGAACA+AGG | 0.686492 | tig0019132:+25306 | Msa1370620:CDS |
| ATCATCAGCGATCAACAAAG+GGG | 0.702082 | tig0019132:-25058 | None:intergenic |
| TTCTGCCATGACGAATTGTG+AGG | 0.703220 | tig0019132:+25494 | Msa1370620:CDS |
| TCACTACCCACAACACACCG+TGG | 0.723118 | tig0019132:+26540 | Msa1370620:three_prime_UTR |
| CAACTAGTGATGTTGTGGTG+AGG | 0.729111 | tig0019132:+24485 | Msa1370620:CDS |
| ACGGTATCCAGACCTGACTG+AGG | 0.735150 | tig0019132:+25647 | Msa1370620:CDS |
| ACTTGAGTACATGCTAACTG+AGG | 0.740737 | tig0019132:+25026 | Msa1370620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAAATTATAAAAACA+AGG | - | tig0019132:23522-23541 | None:intergenic | 10.0% |
| !!! | GTTTTTATAATTTCATTTTT+AGG | + | tig0019132:23523-23542 | Msa1370620:intron | 10.0% |
| !!! | AAAGATTGTTATTATATCAT+TGG | - | tig0019132:23386-23405 | None:intergenic | 15.0% |
| !! | TGATGATAATATAAAATATG+AGG | + | tig0019132:25074-25093 | Msa1370620:CDS | 15.0% |
| !! | ATATGAAATTTGAAGAAAAG+TGG | - | tig0019132:23611-23630 | None:intergenic | 20.0% |
| !! | AATTCTTTCATATCTTCAAT+TGG | + | tig0019132:23924-23943 | Msa1370620:intron | 20.0% |
| !!! | ACTTCAATAATAAATGGATT+TGG | - | tig0019132:23958-23977 | None:intergenic | 20.0% |
| !! | AGTTTCACTTCAATAATAAA+TGG | - | tig0019132:23964-23983 | None:intergenic | 20.0% |
| !! | AATATGTTTACTCTCAATTT+AGG | - | tig0019132:24051-24070 | None:intergenic | 20.0% |
| !! | TATCATTACTCCTAAATTTA+TGG | + | tig0019132:24230-24249 | Msa1370620:intron | 20.0% |
| !! | TAAAAGATTGTAAAAAACCT+CGG | - | tig0019132:24360-24379 | None:intergenic | 20.0% |
| !! | TATTACTAATTACAGATAAG+AGG | - | tig0019132:24404-24423 | None:intergenic | 20.0% |
| !! | AAGATTATCCTCTTTAATTA+AGG | + | tig0019132:24423-24442 | Msa1370620:intron | 20.0% |
| !!! | AGAATAGTACTTAAATTTTG+AGG | - | tig0019132:25797-25816 | None:intergenic | 20.0% |
| !!! | TTACATTGATTTAATGTGAA+TGG | - | tig0019132:25916-25935 | None:intergenic | 20.0% |
| !! | TATGAAGGTAAAAGATAAAA+TGG | + | tig0019132:26216-26235 | Msa1370620:three_prime_UTR | 20.0% |
| !! | AATTTAAACTTCAATCTTCT+TGG | - | tig0019132:26290-26309 | None:intergenic | 20.0% |
| !!! | TACAAATAGAAAGTATTTTC+AGG | - | tig0019132:26688-26707 | None:intergenic | 20.0% |
| !!! | TTTTCGAATTATTTTCCTAT+TGG | + | tig0019132:26740-26759 | Msa1370620:three_prime_UTR | 20.0% |
| !! | ATTTGATGCATAAAAACAAT+TGG | - | tig0019132:26766-26785 | None:intergenic | 20.0% |
| ! | AGTTAGAAAGATAAGGAAAT+AGG | - | tig0019132:23494-23513 | None:intergenic | 25.0% |
| !! | ATTCATATTATAGCTCTGTT+TGG | + | tig0019132:23631-23650 | Msa1370620:intron | 25.0% |
| !! | GTATAAGCTATAAGCTATTT+TGG | + | tig0019132:23759-23778 | Msa1370620:intron | 25.0% |
| ! | TAAACAGTTGTGAATTGTTT+GGG | - | tig0019132:23856-23875 | None:intergenic | 25.0% |
| ! | ATAAACAGTTGTGAATTGTT+TGG | - | tig0019132:23857-23876 | None:intergenic | 25.0% |
| ! | CAAATAAACCAATCCAAAAA+TGG | + | tig0019132:23892-23911 | Msa1370620:intron | 25.0% |
| ! | GATATGAAAGAATTGACATA+GGG | - | tig0019132:23918-23937 | None:intergenic | 25.0% |
| ! | AGATATGAAAGAATTGACAT+AGG | - | tig0019132:23919-23938 | None:intergenic | 25.0% |
| ! | TCATAAAAGTTGAGACAAAA+TGG | - | tig0019132:24081-24100 | None:intergenic | 25.0% |
| ! | ATGATATTTGTACAACCATT+TGG | - | tig0019132:24216-24235 | None:intergenic | 25.0% |
| ! | ATCCTCTTTAATTAAGGATA+AGG | + | tig0019132:24429-24448 | Msa1370620:intron | 25.0% |
| ! | TTCCTTATCCTTAATTAAAG+AGG | - | tig0019132:24434-24453 | None:intergenic | 25.0% |
| ! | TATCAGAAACATATTTCTCT+CGG | + | tig0019132:24936-24955 | Msa1370620:CDS | 25.0% |
| !! | TGTGTAAAAAGACTATTTTC+CGG | + | tig0019132:25105-25124 | Msa1370620:CDS | 25.0% |
| !!! | AAATTTTGAGGAACATAGTT+CGG | - | tig0019132:25785-25804 | None:intergenic | 25.0% |
| ! | AATAAAACATGTGATTAGTG+TGG | + | tig0019132:26788-26807 | Msa1370620:three_prime_UTR | 25.0% |
| TGAGGATTTCAAGAATCAAA+GGG | - | tig0019132:23295-23314 | None:intergenic | 30.0% | |
| ATGAGGATTTCAAGAATCAA+AGG | - | tig0019132:23296-23315 | None:intergenic | 30.0% | |
| TATATCATTGGAATTGAGCA+TGG | - | tig0019132:23374-23393 | None:intergenic | 30.0% | |
| TTAGGTCGAAAAATCAAATG+CGG | - | tig0019132:23416-23435 | None:intergenic | 30.0% | |
| TAACTTCTTCAAGATCCATA+CGG | + | tig0019132:23433-23452 | Msa1370620:intron | 30.0% | |
| GGATTAGAGTTAGAAAGATA+AGG | - | tig0019132:23501-23520 | None:intergenic | 30.0% | |
| ! | AACTTGCTTCTTGATTTCAA+TGG | + | tig0019132:23563-23582 | Msa1370620:intron | 30.0% |
| AAAGTGGAAAAGCAAACTTA+CGG | - | tig0019132:23595-23614 | None:intergenic | 30.0% | |
| ! | AATAATAAATGGATTTGGCC+AGG | - | tig0019132:23953-23972 | None:intergenic | 30.0% |
| ! | TTGATTTTGTCCCAAAACAA+GGG | - | tig0019132:24115-24134 | None:intergenic | 30.0% |
| !! | ATTGATTTTGTCCCAAAACA+AGG | - | tig0019132:24116-24135 | None:intergenic | 30.0% |
| TACTCCTAAATTTATGGTGT+CGG | + | tig0019132:24236-24255 | Msa1370620:intron | 30.0% | |
| AATACCGACACCATAAATTT+AGG | - | tig0019132:24243-24262 | None:intergenic | 30.0% | |
| AATTAAGGATAAGGAAGAGA+AGG | + | tig0019132:24438-24457 | Msa1370620:intron | 30.0% | |
| ! | ATTGCAAGTATTTTGCTGAT+CGG | + | tig0019132:24569-24588 | Msa1370620:CDS | 30.0% |
| GAAGTCGAATAAAGTTTACA+TGG | - | tig0019132:24678-24697 | None:intergenic | 30.0% | |
| TTTGAAAATTGTACCGAGAA+TGG | + | tig0019132:24861-24880 | Msa1370620:CDS | 30.0% | |
| TTGAAAATTGTACCGAGAAT+GGG | + | tig0019132:24862-24881 | Msa1370620:CDS | 30.0% | |
| ! | ATATGTTTCTGATAGCTAAC+TGG | - | tig0019132:24930-24949 | None:intergenic | 30.0% |
| ! | GTGTAAAAAGACTATTTTCC+GGG | + | tig0019132:25106-25125 | Msa1370620:CDS | 30.0% |
| TATCAATGAGTTGTTAAACC+CGG | - | tig0019132:25127-25146 | None:intergenic | 30.0% | |
| TCATTGATACATTTACTCTG+TGG | + | tig0019132:25138-25157 | Msa1370620:CDS | 30.0% | |
| !! | CTATTTGACTGATTTGTCAT+GGG | + | tig0019132:25206-25225 | Msa1370620:CDS | 30.0% |
| ! | AAAGTACTTGAACTTGAACA+AGG | + | tig0019132:25306-25325 | Msa1370620:CDS | 30.0% |
| !!! | GTCTTAAGGTTTTGAAATTG+TGG | + | tig0019132:25436-25455 | Msa1370620:CDS | 30.0% |
| AAGAATGATAGAGACAAAAC+TGG | - | tig0019132:25568-25587 | None:intergenic | 30.0% | |
| !! | AATTTTGAGGAACATAGTTC+GGG | - | tig0019132:25784-25803 | None:intergenic | 30.0% |
| !!! | ACCTCTTTTTTACATGTGAA+TGG | + | tig0019132:25848-25867 | Msa1370620:three_prime_UTR | 30.0% |
| !!! | CCTCTTTTTTACATGTGAAT+GGG | + | tig0019132:25849-25868 | Msa1370620:three_prime_UTR | 30.0% |
| !! | TGTGAATGGGATATTTTTGT+AGG | + | tig0019132:25862-25881 | Msa1370620:three_prime_UTR | 30.0% |
| TGATTTAATGTGAATGGAGA+TGG | - | tig0019132:25910-25929 | None:intergenic | 30.0% | |
| !!! | TTTTTTACTCTTGACAGGAA+AGG | + | tig0019132:26130-26149 | Msa1370620:three_prime_UTR | 30.0% |
| ! | TTTCTTGGTTTGAATTTCGA+AGG | + | tig0019132:26184-26203 | Msa1370620:three_prime_UTR | 30.0% |
| ! | CTACATAAATTACCTTTTGC+AGG | - | tig0019132:26328-26347 | None:intergenic | 30.0% |
| CAAAAGGTAATTTATGTAGC+TGG | + | tig0019132:26329-26348 | Msa1370620:three_prime_UTR | 30.0% | |
| ACAAAGTTCCAAAAATGTCT+CGG | - | tig0019132:26361-26380 | None:intergenic | 30.0% | |
| !!! | TTTTGGAACTTTGTTACAAG+TGG | + | tig0019132:26367-26386 | Msa1370620:three_prime_UTR | 30.0% |
| ATAGAGGGTAGATATCATTA+AGG | + | tig0019132:26416-26435 | Msa1370620:three_prime_UTR | 30.0% | |
| ! | AGATATCATTAAGGTGTTTC+TGG | + | tig0019132:26425-26444 | Msa1370620:three_prime_UTR | 30.0% |
| !! | AATACGTGCATATGTCATTT+TGG | - | tig0019132:26632-26651 | None:intergenic | 30.0% |
| GATCTGCACATAAAAATATG+TGG | - | tig0019132:26712-26731 | None:intergenic | 30.0% | |
| CATAAAAACAATTGGCCAAT+AGG | - | tig0019132:26758-26777 | None:intergenic | 30.0% | |
| AGGAAGAATATATGGTACTG+TGG | + | tig0019132:23231-23250 | Msa1370620:exon | 35.0% | |
| CAAGAATCAAAGGGATCTTA+TGG | - | tig0019132:23286-23305 | None:intergenic | 35.0% | |
| GTATGGATCTTGAAGAAGTT+AGG | - | tig0019132:23434-23453 | None:intergenic | 35.0% | |
| !! | AATTGACATAGGGCCATTTT+TGG | - | tig0019132:23908-23927 | None:intergenic | 35.0% |
| CATATCTTCAATTGGATTCC+TGG | + | tig0019132:23932-23951 | Msa1370620:intron | 35.0% | |
| ! | TGATTTTGTCCCAAAACAAG+GGG | - | tig0019132:24114-24133 | None:intergenic | 35.0% |
| AAAATCAATAGAGCGAGAGA+GGG | + | tig0019132:24127-24146 | Msa1370620:intron | 35.0% | |
| TCTCAAAAGTTGTCACCAAA+TGG | + | tig0019132:24198-24217 | Msa1370620:intron | 35.0% | |
| CTAATTACAGATAAGAGGAG+AGG | - | tig0019132:24399-24418 | None:intergenic | 35.0% | |
| GAGAAGGATATCTGTGTAAT+TGG | + | tig0019132:24454-24473 | Msa1370620:CDS | 35.0% | |
| !! | ATGGTTCAGTTGATGATTTG+TGG | + | tig0019132:24713-24732 | Msa1370620:CDS | 35.0% |
| AATACTTGGAAGCAATGACA+TGG | + | tig0019132:24815-24834 | Msa1370620:CDS | 35.0% | |
| ATACTTGGAAGCAATGACAT+GGG | + | tig0019132:24816-24835 | Msa1370620:CDS | 35.0% | |
| GATTTCAGATCATTCATTGC+CGG | - | tig0019132:24991-25010 | None:intergenic | 35.0% | |
| TATCATCAGCGATCAACAAA+GGG | - | tig0019132:25062-25081 | None:intergenic | 35.0% | |
| TTATCATCAGCGATCAACAA+AGG | - | tig0019132:25063-25082 | None:intergenic | 35.0% | |
| CCATGACAAATCAGTCAAAT+AGG | - | tig0019132:25208-25227 | None:intergenic | 35.0% | |
| !! | CCTATTTGACTGATTTGTCA+TGG | + | tig0019132:25205-25224 | Msa1370620:CDS | 35.0% |
| ! | TGAGAGATTTTGTTGAGTAC+TGG | + | tig0019132:25259-25278 | Msa1370620:CDS | 35.0% |
| AACCTTTGATGTTACCTCAA+TGG | - | tig0019132:25370-25389 | None:intergenic | 35.0% | |
| !! | GGTAACATCAAAGGTTTTAG+AGG | + | tig0019132:25374-25393 | Msa1370620:CDS | 35.0% |
| !!! | GTTTTAGAGGCAATTGCTTA+TGG | + | tig0019132:25387-25406 | Msa1370620:CDS | 35.0% |
| TTAAAATGGATGGCGAAATG+TGG | + | tig0019132:25529-25548 | Msa1370620:CDS | 35.0% | |
| GGTTGGAAAACGAGAATATA+CGG | + | tig0019132:25628-25647 | Msa1370620:CDS | 35.0% | |
| !! | AGTATGGTGTTATAGATCCA+AGG | + | tig0019132:25677-25696 | Msa1370620:CDS | 35.0% |
| CCCATTCACATGTAAAAAAG+AGG | - | tig0019132:25852-25871 | None:intergenic | 35.0% | |
| !! | GAATGGGATATTTTTGTAGG+AGG | + | tig0019132:25865-25884 | Msa1370620:three_prime_UTR | 35.0% |
| !!! | GTGCACTATTTTGATTACTC+TGG | - | tig0019132:26012-26031 | None:intergenic | 35.0% |
| ! | CCTAAATCGTCGATTAGTAT+AGG | - | tig0019132:26041-26060 | None:intergenic | 35.0% |
| CCTATACTAATCGACGATTT+AGG | + | tig0019132:26038-26057 | Msa1370620:three_prime_UTR | 35.0% | |
| TACTAATCGACGATTTAGGT+TGG | + | tig0019132:26042-26061 | Msa1370620:three_prime_UTR | 35.0% | |
| TCAAGAGTAAAAAACACCAC+AGG | - | tig0019132:26124-26143 | None:intergenic | 35.0% | |
| !!! | TGGTGTTTTTTACTCTTGAC+AGG | + | tig0019132:26125-26144 | Msa1370620:three_prime_UTR | 35.0% |
| ! | ATATCGAAGAACGCTTTTCT+TGG | + | tig0019132:26169-26188 | Msa1370620:three_prime_UTR | 35.0% |
| ! | AGCTGTTATTTGTTTGTGTG+AGG | + | tig0019132:26240-26259 | Msa1370620:three_prime_UTR | 35.0% |
| !! | TATCATTAAGGTGTTTCTGG+TGG | + | tig0019132:26428-26447 | Msa1370620:three_prime_UTR | 35.0% |
| TGAAGAAACTCAAGCTATAG+TGG | - | tig0019132:26523-26542 | None:intergenic | 35.0% | |
| TTGGAATTGAGCATGGAACA+AGG | - | tig0019132:23367-23386 | None:intergenic | 40.0% | |
| GTGAGAAATGAAAGACCGTA+TGG | - | tig0019132:23451-23470 | None:intergenic | 40.0% | |
| GGTGAAAACAAGAACATGAG+TGG | - | tig0019132:23473-23492 | None:intergenic | 40.0% | |
| TGGAAAAGCAAACTTACGGT+AGG | - | tig0019132:23591-23610 | None:intergenic | 40.0% | |
| !!! | ACATAGGGCCATTTTTGGAT+TGG | - | tig0019132:23903-23922 | None:intergenic | 40.0% |
| !!! | AACCTTCATCCCCTTGTTTT+GGG | + | tig0019132:24102-24121 | Msa1370620:intron | 40.0% |
| CAAAATCAATAGAGCGAGAG+AGG | + | tig0019132:24126-24145 | Msa1370620:intron | 40.0% | |
| CCAACTTCTTCTACTAACTG+AGG | - | tig0019132:24288-24307 | None:intergenic | 40.0% | |
| CCTCAGTTAGTAGAAGAAGT+TGG | + | tig0019132:24285-24304 | Msa1370620:intron | 40.0% | |
| CTAACTTCTTCTACTAACCG+AGG | + | tig0019132:24340-24359 | Msa1370620:intron | 40.0% | |
| CCACAACATCACTAGTTGAT+CGG | - | tig0019132:24483-24502 | None:intergenic | 40.0% | |
| GAACCTAGTATCTGACAAGT+TGG | - | tig0019132:24610-24629 | None:intergenic | 40.0% | |
| TATTCGACTTCTGTACGTTG+TGG | + | tig0019132:24687-24706 | Msa1370620:CDS | 40.0% | |
| !! | TCAGTTGATGATTTGTGGCA+TGG | + | tig0019132:24718-24737 | Msa1370620:CDS | 40.0% |
| ! | CATGGTGTTAGAAATGCTCT+TGG | + | tig0019132:24736-24755 | Msa1370620:CDS | 40.0% |
| ! | ACACACGCAGCAACAATTTT+CGG | - | tig0019132:24793-24812 | None:intergenic | 40.0% |
| TCAGCTTGTAATCCCATTCT+CGG | - | tig0019132:24877-24896 | None:intergenic | 40.0% | |
| TATCCTAGCTAGACTTCAAC+CGG | + | tig0019132:24900-24919 | Msa1370620:CDS | 40.0% | |
| CTGATAGCTAACTGGTTAAC+CGG | - | tig0019132:24922-24941 | None:intergenic | 40.0% | |
| ACTTGAGTACATGCTAACTG+AGG | + | tig0019132:25026-25045 | Msa1370620:CDS | 40.0% | |
| ATCATCAGCGATCAACAAAG+GGG | - | tig0019132:25061-25080 | None:intergenic | 40.0% | |
| TACTTCAGGAAGTGATTCTG+CGG | - | tig0019132:25166-25185 | None:intergenic | 40.0% | |
| CAGAATCACTTCCTGAAGTA+GGG | + | tig0019132:25166-25185 | Msa1370620:CDS | 40.0% | |
| !! | TGAGTACTGGTTTGATGCAT+CGG | + | tig0019132:25272-25291 | Msa1370620:CDS | 40.0% |
| AGCCATTGAGGTAACATCAA+AGG | + | tig0019132:25365-25384 | Msa1370620:CDS | 40.0% | |
| AATTGTGGCTTCCATTTGTG+AGG | + | tig0019132:25451-25470 | Msa1370620:CDS | 40.0% | |
| ATTGTGGCTTCCATTTGTGA+GGG | + | tig0019132:25452-25471 | Msa1370620:CDS | 40.0% | |
| ATCATTCTTGCATTGCCATC+AGG | + | tig0019132:25579-25598 | Msa1370620:CDS | 40.0% | |
| TCATTCTTGCATTGCCATCA+GGG | + | tig0019132:25580-25599 | Msa1370620:CDS | 40.0% | |
| !! | AGGGCTTTTAACTGAATGGT+TGG | + | tig0019132:25611-25630 | Msa1370620:CDS | 40.0% |
| GTTATAGATCCAAGGTTGCA+AGG | + | tig0019132:25685-25704 | Msa1370620:CDS | 40.0% | |
| GAGAAGACTCTCATTGTTAG+AGG | + | tig0019132:25707-25726 | Msa1370620:CDS | 40.0% | |
| AGCATGTCATGACACAGTAA+CGG | + | tig0019132:25733-25752 | Msa1370620:CDS | 40.0% | |
| CTAAACTTCATGCCTAGTGA+AGG | + | tig0019132:25815-25834 | Msa1370620:three_prime_UTR | 40.0% | |
| GTGATATTCTCTCCTTCACT+AGG | - | tig0019132:25830-25849 | None:intergenic | 40.0% | |
| CGTAAGCATTATGCTGTGTT+GGG | - | tig0019132:26093-26112 | None:intergenic | 40.0% | |
| ACGTAAGCATTATGCTGTGT+TGG | - | tig0019132:26094-26113 | None:intergenic | 40.0% | |
| !! | CGAAGGAGCATCATATATGA+AGG | + | tig0019132:26201-26220 | Msa1370620:three_prime_UTR | 40.0% |
| GTCACAATGTAACCTGCAAA+AGG | + | tig0019132:26313-26332 | Msa1370620:three_prime_UTR | 40.0% | |
| !! | GTTTCTGGTGGAATAACACA+AGG | + | tig0019132:26440-26459 | Msa1370620:three_prime_UTR | 40.0% |
| TAACACAAGGAGCTGTATGT+AGG | + | tig0019132:26453-26472 | Msa1370620:three_prime_UTR | 40.0% | |
| !!! | CATTTTGGAACATCTCTCGT+GGG | - | tig0019132:26617-26636 | None:intergenic | 40.0% |
| !!! | TCATTTTGGAACATCTCTCG+TGG | - | tig0019132:26618-26637 | None:intergenic | 40.0% |
| GACATATGCACGTATTTGCA+TGG | + | tig0019132:26636-26655 | Msa1370620:three_prime_UTR | 40.0% | |
| TTATGGCTTACAGCTTGTGC+TGG | - | tig0019132:23269-23288 | None:intergenic | 45.0% | |
| !! | CAACCTTCATCCCCTTGTTT+TGG | + | tig0019132:24101-24120 | Msa1370620:intron | 45.0% |
| CCGATCAACTAGTGATGTTG+TGG | + | tig0019132:24480-24499 | Msa1370620:CDS | 45.0% | |
| CAACTAGTGATGTTGTGGTG+AGG | + | tig0019132:24485-24504 | Msa1370620:CDS | 45.0% | |
| CTGATCGGCTATCTGAGAAT+TGG | + | tig0019132:24584-24603 | Msa1370620:CDS | 45.0% | |
| TGGCCAACTTGTCAGATACT+AGG | + | tig0019132:24604-24623 | Msa1370620:CDS | 45.0% | |
| TGCTGCGTGTGTGAAATACT+TGG | + | tig0019132:24801-24820 | Msa1370620:CDS | 45.0% | |
| GGTTGAAGTCTAGCTAGGAT+AGG | - | tig0019132:24901-24920 | None:intergenic | 45.0% | |
| TAACCGGTTGAAGTCTAGCT+AGG | - | tig0019132:24906-24925 | None:intergenic | 45.0% | |
| TTCAGATCATTCATTGCCGG+TGG | - | tig0019132:24988-25007 | None:intergenic | 45.0% | |
| GCAGAATCACTTCCTGAAGT+AGG | + | tig0019132:25165-25184 | Msa1370620:CDS | 45.0% | |
| !! | ACTGGTTTGATGCATCGGAA+AGG | + | tig0019132:25277-25296 | Msa1370620:CDS | 45.0% |
| GATAAAGTTGCGAGCCATTG+AGG | + | tig0019132:25353-25372 | Msa1370620:CDS | 45.0% | |
| ACCTTAAGACGTTTCGCAGT+TGG | - | tig0019132:25426-25445 | None:intergenic | 45.0% | |
| ! | GGTTTGGTAACCCTCACAAA+TGG | - | tig0019132:25465-25484 | None:intergenic | 45.0% |
| ! | GGCAGAATCAATCACTGGTT+TGG | - | tig0019132:25481-25500 | None:intergenic | 45.0% |
| GTCATGGCAGAATCAATCAC+TGG | - | tig0019132:25486-25505 | None:intergenic | 45.0% | |
| TTCTGCCATGACGAATTGTG+AGG | + | tig0019132:25494-25513 | Msa1370620:CDS | 45.0% | |
| AGCATCCTCACAATTCGTCA+TGG | - | tig0019132:25502-25521 | None:intergenic | 45.0% | |
| GGATGCTGCGTTGCTTAAAA+TGG | + | tig0019132:25515-25534 | Msa1370620:CDS | 45.0% | |
| GCTGCGTTGCTTAAAATGGA+TGG | + | tig0019132:25519-25538 | Msa1370620:CDS | 45.0% | |
| CATTCTTGCATTGCCATCAG+GGG | + | tig0019132:25581-25600 | Msa1370620:CDS | 45.0% | |
| !! | AGGCAGGGCTTTTAACTGAA+TGG | + | tig0019132:25607-25626 | Msa1370620:CDS | 45.0% |
| ATACTTCGAATGCCTCAGTC+AGG | - | tig0019132:25662-25681 | None:intergenic | 45.0% | |
| ! | TGACTGAGGCATTCGAAGTA+TGG | + | tig0019132:25661-25680 | Msa1370620:CDS | 45.0% |
| GGGAACACATCAAATTGAGC+GGG | - | tig0019132:25764-25783 | None:intergenic | 45.0% | |
| CGGGAACACATCAAATTGAG+CGG | - | tig0019132:25765-25784 | None:intergenic | 45.0% | |
| !! | TTAGGTTGGTGAGTGTGACA+TGG | + | tig0019132:26056-26075 | Msa1370620:three_prime_UTR | 45.0% |
| TGCTTACGTATGATGTCCTG+TGG | + | tig0019132:26105-26124 | Msa1370620:three_prime_UTR | 45.0% | |
| CTCTTGACAGGAAAGGAGAA+AGG | + | tig0019132:26137-26156 | Msa1370620:three_prime_UTR | 45.0% | |
| ! | GGCATGAACCGAGACATTTT+TGG | + | tig0019132:26350-26369 | Msa1370620:three_prime_UTR | 45.0% |
| !! | TCAGGACTAGCTTTGCAACT+TGG | - | tig0019132:26670-26689 | None:intergenic | 45.0% |
| GAGAGAGAGAGAGAGGAATG+AGG | - | tig0019132:23313-23332 | None:intergenic | 50.0% | |
| TCCTCTCTCTCTCTCTCTCA+AGG | + | tig0019132:23316-23335 | Msa1370620:intron | 50.0% | |
| CCTCTCTCTCTCTCTCTCAA+GGG | + | tig0019132:23317-23336 | Msa1370620:intron | 50.0% | |
| GTCCCAAAACAAGGGGATGA+AGG | - | tig0019132:24107-24126 | None:intergenic | 50.0% | |
| AATAGAGCGAGAGAGGGAGA+GGG | + | tig0019132:24133-24152 | Msa1370620:intron | 50.0% | |
| ! | GAGGAGAGGCTCTGACTATT+GGG | - | tig0019132:24385-24404 | None:intergenic | 50.0% |
| ! | AGAGGAGAGGCTCTGACTAT+TGG | - | tig0019132:24386-24405 | None:intergenic | 50.0% |
| CGCAAGAAGGTCGAGATGAT+TGG | + | tig0019132:24515-24534 | Msa1370620:CDS | 50.0% | |
| CTTCTGTACGTTGTGGTCGA+TGG | + | tig0019132:24694-24713 | Msa1370620:CDS | 50.0% | |
| GACATGGGAAGAGAGTGAAG+AGG | + | tig0019132:24831-24850 | Msa1370620:CDS | 50.0% | |
| ATGGGAAGAGAGTGAAGAGG+AGG | + | tig0019132:24834-24853 | Msa1370620:CDS | 50.0% | |
| GAGGCGACGATGTAGCAAAA+CGG | - | tig0019132:24966-24985 | None:intergenic | 50.0% | |
| AGATCATTCATTGCCGGTGG+AGG | - | tig0019132:24985-25004 | None:intergenic | 50.0% | |
| TCCTGAAGTAGGGAACGTCT+CGG | + | tig0019132:25176-25195 | Msa1370620:CDS | 50.0% | |
| GCCAACTGCGAAACGTCTTA+AGG | + | tig0019132:25422-25441 | Msa1370620:CDS | 50.0% | |
| TGGCGAAATGTGGCAATCTC+TGG | + | tig0019132:25539-25558 | Msa1370620:CDS | 50.0% | |
| GAGTCTTCTCCTTGCAACCT+TGG | - | tig0019132:25697-25716 | None:intergenic | 50.0% | |
| TCTATCTCTGCTGCGTACAG+TGG | - | tig0019132:26401-26420 | None:intergenic | 50.0% | |
| ACTGTACGCAGCAGAGATAG+AGG | + | tig0019132:26400-26419 | Msa1370620:three_prime_UTR | 50.0% | |
| CTGTACGCAGCAGAGATAGA+GGG | + | tig0019132:26401-26420 | Msa1370620:three_prime_UTR | 50.0% | |
| TATCAGCTTCCAACCCTCCA+CGG | - | tig0019132:26560-26579 | None:intergenic | 50.0% | |
| ! | CATCTCTCGTGGGCTTTTCA+TGG | - | tig0019132:26607-26626 | None:intergenic | 50.0% |
| CCCTTGAGAGAGAGAGAGAG+AGG | - | tig0019132:23320-23339 | None:intergenic | 55.0% | |
| CAATAGAGCGAGAGAGGGAG+AGG | + | tig0019132:24132-24151 | Msa1370620:intron | 55.0% | |
| ACCGAGACGTTCCCTACTTC+AGG | - | tig0019132:25180-25199 | None:intergenic | 55.0% | |
| TGCATTGCCATCAGGGGATC+AGG | + | tig0019132:25587-25606 | Msa1370620:CDS | 55.0% | |
| ACGGTATCCAGACCTGACTG+AGG | + | tig0019132:25647-25666 | Msa1370620:CDS | 55.0% | |
| TCGAATGCCTCAGTCAGGTC+TGG | - | tig0019132:25657-25676 | None:intergenic | 55.0% | |
| TCACTACCCACAACACACCG+TGG | + | tig0019132:26540-26559 | Msa1370620:three_prime_UTR | 55.0% | |
| TACCCACAACACACCGTGGA+GGG | + | tig0019132:26544-26563 | Msa1370620:three_prime_UTR | 55.0% | |
| AACCCTCCACGGTGTGTTGT+GGG | - | tig0019132:26549-26568 | None:intergenic | 55.0% | |
| GTGAGGCTACGCACGCAAGA+AGG | + | tig0019132:24502-24521 | Msa1370620:CDS | 60.0% | |
| TGCTACATCGTCGCCTCCAC+CGG | + | tig0019132:24969-24988 | Msa1370620:CDS | 60.0% | |
| TTGCCATCAGGGGATCAGGC+AGG | + | tig0019132:25591-25610 | Msa1370620:CDS | 60.0% | |
| TGCCATCAGGGGATCAGGCA+GGG | + | tig0019132:25592-25611 | Msa1370620:CDS | 60.0% | |
| CTACCCACAACACACCGTGG+AGG | + | tig0019132:26543-26562 | Msa1370620:three_prime_UTR | 60.0% | |
| CAACCCTCCACGGTGTGTTG+TGG | - | tig0019132:26550-26569 | None:intergenic | 60.0% | |
| CACAACACACCGTGGAGGGT+TGG | + | tig0019132:26548-26567 | Msa1370620:three_prime_UTR | 60.0% | |
| AGCCCTGCCTGATCCCCTGA+TGG | - | tig0019132:25597-25616 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019132 | gene | 23231 | 26811 | 23231 | ID=Msa1370620;Name=Msa1370620 |
| tig0019132 | mRNA | 23231 | 26811 | 23231 | ID=Msa1370620-mRNA-1;Parent=Msa1370620;Name=Msa1370620-mRNA-1;_AED=0.06;_eAED=0.06;_QI=11|0|1|1|1|1|2|1059|447 |
| tig0019132 | exon | 23231 | 23277 | 23231 | ID=Msa1370620-mRNA-1:exon:1757;Parent=Msa1370620-mRNA-1 |
| tig0019132 | exon | 24445 | 26811 | 24445 | ID=Msa1370620-mRNA-1:exon:1758;Parent=Msa1370620-mRNA-1 |
| tig0019132 | five_prime_UTR | 23231 | 23241 | 23231 | ID=Msa1370620-mRNA-1:five_prime_utr;Parent=Msa1370620-mRNA-1 |
| tig0019132 | CDS | 23242 | 23277 | 23242 | ID=Msa1370620-mRNA-1:cds;Parent=Msa1370620-mRNA-1 |
| tig0019132 | CDS | 24445 | 25752 | 24445 | ID=Msa1370620-mRNA-1:cds;Parent=Msa1370620-mRNA-1 |
| tig0019132 | three_prime_UTR | 25753 | 26811 | 25753 | ID=Msa1370620-mRNA-1:three_prime_utr;Parent=Msa1370620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
