Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118940 | XP_013450218.1 | 97.936 | 436 | 9 | 0 | 12 | 447 | 4 | 439 | 0.0 | 872 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118940 | sp|Q8RX01|Y3567_ARATH | 63.256 | 430 | 151 | 5 | 22 | 446 | 14 | 441 | 0.0 | 525 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118940 | A0A072U4G5 | 97.936 | 436 | 9 | 0 | 12 | 447 | 4 | 439 | 0.0 | 872 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031820 | Msa1118940 | 0.808180 | 3.515824e-50 | -8.615850e-47 |
| Msa0032320 | Msa1118940 | 0.806777 | 6.977495e-50 | -8.615850e-47 |
| Msa0037160 | Msa1118940 | 0.801924 | 7.158356e-49 | -8.615850e-47 |
| Msa0046760 | Msa1118940 | 0.830807 | 2.385070e-55 | -8.615850e-47 |
| Msa0099510 | Msa1118940 | 0.809360 | 1.966115e-50 | -8.615850e-47 |
| Msa0104700 | Msa1118940 | 0.802637 | 5.104856e-49 | -8.615850e-47 |
| Msa0603670 | Msa1118940 | 0.811629 | 6.362677e-51 | -8.615850e-47 |
| Msa0610500 | Msa1118940 | 0.813131 | 2.990026e-51 | -8.615850e-47 |
| Msa0619920 | Msa1118940 | 0.810331 | 1.215712e-50 | -8.615850e-47 |
| Msa0620620 | Msa1118940 | 0.801340 | 9.431825e-49 | -8.615850e-47 |
| Msa0626680 | Msa1118940 | 0.845478 | 3.960644e-59 | -8.615850e-47 |
| Msa0629650 | Msa1118940 | 0.801392 | 9.199470e-49 | -8.615850e-47 |
| Msa0641140 | Msa1118940 | 0.802707 | 4.937191e-49 | -8.615850e-47 |
| Msa0646130 | Msa1118940 | 0.800940 | 1.138291e-48 | -8.615850e-47 |
| Msa0651150 | Msa1118940 | 0.815194 | 1.047668e-51 | -8.615850e-47 |
| Msa0664760 | Msa1118940 | 0.840837 | 6.835424e-58 | -8.615850e-47 |
| Msa0677080 | Msa1118940 | 0.804488 | 2.108730e-49 | -8.615850e-47 |
| Msa0679700 | Msa1118940 | 0.802301 | 5.985994e-49 | -8.615850e-47 |
| Msa0682090 | Msa1118940 | 0.809032 | 2.311657e-50 | -8.615850e-47 |
| Msa0682140 | Msa1118940 | 0.807874 | 4.084777e-50 | -8.615850e-47 |
| Msa0760380 | Msa1118940 | 0.804804 | 1.812201e-49 | -8.615850e-47 |
| Msa0793140 | Msa1118940 | -0.805172 | 1.517568e-49 | -8.615850e-47 |
| Msa0800270 | Msa1118940 | 0.818255 | 2.155900e-52 | -8.615850e-47 |
| Msa0825280 | Msa1118940 | 0.801497 | 8.756797e-49 | -8.615850e-47 |
| Msa0826220 | Msa1118940 | 0.814814 | 1.271582e-51 | -8.615850e-47 |
| Msa0826760 | Msa1118940 | 0.809282 | 2.044046e-50 | -8.615850e-47 |
| Msa0837650 | Msa1118940 | 0.817185 | 3.759929e-52 | -8.615850e-47 |
| Msa0838260 | Msa1118940 | 0.820842 | 5.540487e-53 | -8.615850e-47 |
| Msa0126770 | Msa1118940 | 0.826621 | 2.453961e-54 | -8.615850e-47 |
| Msa0135420 | Msa1118940 | 0.806179 | 9.326039e-50 | -8.615850e-47 |
| Msa0136100 | Msa1118940 | 0.801337 | 9.443014e-49 | -8.615850e-47 |
| Msa0146770 | Msa1118940 | 0.815050 | 1.127473e-51 | -8.615850e-47 |
| Msa0154440 | Msa1118940 | 0.807637 | 4.586542e-50 | -8.615850e-47 |
| Msa0158360 | Msa1118940 | 0.803893 | 2.804734e-49 | -8.615850e-47 |
| Msa0165440 | Msa1118940 | 0.801007 | 1.103097e-48 | -8.615850e-47 |
| Msa0171850 | Msa1118940 | 0.821451 | 4.010661e-53 | -8.615850e-47 |
| Msa0177210 | Msa1118940 | 0.800890 | 1.165584e-48 | -8.615850e-47 |
| Msa0185510 | Msa1118940 | 0.804595 | 2.003057e-49 | -8.615850e-47 |
| Msa0188730 | Msa1118940 | -0.801191 | 1.011611e-48 | -8.615850e-47 |
| Msa0198520 | Msa1118940 | 0.801811 | 7.550858e-49 | -8.615850e-47 |
| Msa0198530 | Msa1118940 | 0.800644 | 1.308166e-48 | -8.615850e-47 |
| Msa0208810 | Msa1118940 | 0.819090 | 1.393683e-52 | -8.615850e-47 |
| Msa0219250 | Msa1118940 | -0.816075 | 6.665662e-52 | -8.615850e-47 |
| Msa0227400 | Msa1118940 | 0.802508 | 5.426079e-49 | -8.615850e-47 |
| Msa0229170 | Msa1118940 | 0.813413 | 2.592428e-51 | -8.615850e-47 |
| Msa0231660 | Msa1118940 | 0.814866 | 1.238504e-51 | -8.615850e-47 |
| Msa0235120 | Msa1118940 | 0.821822 | 3.291698e-53 | -8.615850e-47 |
| Msa0428050 | Msa1118940 | 0.828583 | 8.293057e-55 | -8.615850e-47 |
| Msa0428240 | Msa1118940 | 0.836673 | 8.150975e-57 | -8.615850e-47 |
| Msa0437400 | Msa1118940 | 0.802356 | 5.832765e-49 | -8.615850e-47 |
| Msa0437510 | Msa1118940 | 0.807644 | 4.570446e-50 | -8.615850e-47 |
| Msa0451070 | Msa1118940 | 0.811477 | 6.866481e-51 | -8.615850e-47 |
| Msa0474390 | Msa1118940 | 0.830592 | 2.693125e-55 | -8.615850e-47 |
| Msa0474590 | Msa1118940 | 0.867975 | 9.203629e-66 | -8.615850e-47 |
| Msa0479200 | Msa1118940 | 0.814487 | 1.502628e-51 | -8.615850e-47 |
| Msa0481750 | Msa1118940 | 0.829829 | 4.135914e-55 | -8.615850e-47 |
| Msa0994390 | Msa1118940 | 0.821980 | 3.026100e-53 | -8.615850e-47 |
| Msa1001350 | Msa1118940 | 0.809019 | 2.326372e-50 | -8.615850e-47 |
| Msa1029970 | Msa1118940 | 0.802644 | 5.086566e-49 | -8.615850e-47 |
| Msa1038080 | Msa1118940 | 0.801191 | 1.011611e-48 | -8.615850e-47 |
| Msa1040800 | Msa1118940 | 0.813314 | 2.724639e-51 | -8.615850e-47 |
| Msa1040840 | Msa1118940 | 0.826501 | 2.620600e-54 | -8.615850e-47 |
| Msa1041520 | Msa1118940 | 0.819594 | 1.069897e-52 | -8.615850e-47 |
| Msa1080800 | Msa1118940 | 0.939711 | 8.024058e-100 | -8.615850e-47 |
| Msa1081560 | Msa1118940 | 0.801408 | 9.134090e-49 | -8.615850e-47 |
| Msa1093330 | Msa1118940 | 0.814479 | 1.508760e-51 | -8.615850e-47 |
| Msa1105500 | Msa1118940 | 0.800460 | 1.426104e-48 | -8.615850e-47 |
| Msa0241470 | Msa1118940 | 0.813407 | 2.600170e-51 | -8.615850e-47 |
| Msa0258880 | Msa1118940 | -0.816016 | 6.871663e-52 | -8.615850e-47 |
| Msa0265380 | Msa1118940 | 0.806633 | 7.482105e-50 | -8.615850e-47 |
| Msa0268090 | Msa1118940 | 0.843598 | 1.269744e-58 | -8.615850e-47 |
| Msa0281430 | Msa1118940 | 0.818262 | 2.148983e-52 | -8.615850e-47 |
| Msa0288730 | Msa1118940 | 0.837331 | 5.536215e-57 | -8.615850e-47 |
| Msa0303360 | Msa1118940 | 0.814675 | 1.365579e-51 | -8.615850e-47 |
| Msa0313740 | Msa1118940 | 0.828749 | 7.562742e-55 | -8.615850e-47 |
| Msa1118940 | Msa1126450 | 0.828883 | 7.018215e-55 | -8.615850e-47 |
| Msa1118940 | Msa1127130 | 0.803705 | 3.068559e-49 | -8.615850e-47 |
| Msa1118940 | Msa1162830 | 0.809152 | 2.178802e-50 | -8.615850e-47 |
| Msa1118940 | Msa1163540 | 0.823439 | 1.384591e-53 | -8.615850e-47 |
| Msa1118940 | Msa1166410 | 0.803207 | 3.891776e-49 | -8.615850e-47 |
| Msa1118940 | Msa1219810 | 0.844899 | 5.679495e-59 | -8.615850e-47 |
| Msa1118940 | Msa1223330 | 0.806690 | 7.278749e-50 | -8.615850e-47 |
| Msa1118940 | Msa1253810 | 0.800812 | 1.209191e-48 | -8.615850e-47 |
| Msa1118940 | Msa1263020 | 0.801772 | 7.690294e-49 | -8.615850e-47 |
| Msa1118940 | Msa1286610 | 0.815347 | 9.686256e-52 | -8.615850e-47 |
| Msa1118940 | Msa1343420 | 0.818399 | 2.000919e-52 | -8.615850e-47 |
| Msa1118940 | Msa1370620 | 0.990654 | 1.139474e-183 | -8.615850e-47 |
| Msa1118940 | Msa1375680 | 0.814580 | 1.432944e-51 | -8.615850e-47 |
| Msa1118940 | Msa1384870 | 0.802211 | 6.246549e-49 | -8.615850e-47 |
| Msa1118940 | Msa1424780 | 0.820953 | 5.222024e-53 | -8.615850e-47 |
| Msa1118940 | Msa1449910 | 0.817411 | 3.344791e-52 | -8.615850e-47 |
| Msa1118940 | Msa1466090 | 0.811296 | 7.516871e-51 | -8.615850e-47 |
| Msa0518810 | Msa1118940 | 0.837037 | 6.582070e-57 | -8.615850e-47 |
| Msa0519130 | Msa1118940 | 0.821164 | 4.670853e-53 | -8.615850e-47 |
| Msa0527910 | Msa1118940 | 0.806668 | 7.354923e-50 | -8.615850e-47 |
| Msa0530100 | Msa1118940 | 0.807027 | 6.175953e-50 | -8.615850e-47 |
| Msa0532540 | Msa1118940 | 0.804627 | 1.972985e-49 | -8.615850e-47 |
| Msa0536790 | Msa1118940 | 0.819563 | 1.087768e-52 | -8.615850e-47 |
| Msa0542160 | Msa1118940 | 0.828044 | 1.118777e-54 | -8.615850e-47 |
| Msa0545060 | Msa1118940 | 0.826872 | 2.137271e-54 | -8.615850e-47 |
| Msa0546570 | Msa1118940 | 0.809277 | 2.049137e-50 | -8.615850e-47 |
| Msa0549590 | Msa1118940 | 0.805857 | 1.090041e-49 | -8.615850e-47 |
| Msa0578090 | Msa1118940 | 0.820670 | 6.067488e-53 | -8.615850e-47 |
| Msa0586850 | Msa1118940 | 0.839319 | 1.701030e-57 | -8.615850e-47 |
| Msa0589390 | Msa1118940 | 0.815809 | 7.640976e-52 | -8.615850e-47 |
| Msa0600410 | Msa1118940 | -0.804191 | 2.431871e-49 | -8.615850e-47 |
| Msa0857370 | Msa1118940 | 0.808335 | 3.257913e-50 | -8.615850e-47 |
| Msa0865890 | Msa1118940 | 0.839054 | 1.993001e-57 | -8.615850e-47 |
| Msa0895310 | Msa1118940 | 0.824773 | 6.730610e-54 | -8.615850e-47 |
| Msa0901320 | Msa1118940 | 0.810869 | 9.302733e-51 | -8.615850e-47 |
| Msa0922030 | Msa1118940 | 0.804285 | 2.324479e-49 | -8.615850e-47 |
| Msa0931720 | Msa1118940 | 0.802795 | 4.734047e-49 | -8.615850e-47 |
| Msa0947530 | Msa1118940 | -0.835233 | 1.890703e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118940 | MtrunA17_Chr7g0267491 | 97.936 | 436 | 9 | 0 | 12 | 447 | 4 | 439 | 0.0 | 872 |
| Msa1118940 | MtrunA17_Chr3g0080931 | 40.529 | 227 | 131 | 3 | 210 | 436 | 1 | 223 | 2.56e-54 | 181 |
| Msa1118940 | MtrunA17_Chr4g0034941 | 24.130 | 460 | 261 | 17 | 21 | 429 | 50 | 472 | 3.23e-17 | 84.0 |
| Msa1118940 | MtrunA17_Chr8g0387311 | 23.349 | 424 | 272 | 14 | 22 | 429 | 185 | 571 | 1.16e-16 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1118940 | AT3G05675.2 | 63.256 | 430 | 151 | 5 | 22 | 446 | 14 | 441 | 0.0 | 525 |
| Msa1118940 | AT3G05675.1 | 63.256 | 430 | 151 | 5 | 22 | 446 | 14 | 441 | 0.0 | 525 |
| Msa1118940 | AT3G05675.3 | 63.256 | 430 | 151 | 5 | 22 | 446 | 14 | 441 | 0.0 | 525 |
| Msa1118940 | AT4G10800.1 | 41.852 | 270 | 139 | 6 | 175 | 436 | 10 | 269 | 3.04e-62 | 203 |
| Msa1118940 | AT4G10800.2 | 41.767 | 249 | 132 | 5 | 191 | 436 | 8 | 246 | 1.22e-57 | 191 |
| Msa1118940 | AT1G63850.1 | 23.341 | 437 | 270 | 15 | 22 | 435 | 135 | 529 | 3.24e-17 | 84.3 |
Find 131 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATACGTGCATATGTCATTT+TGG | 0.220195 | 7_3:+67726582 | None:intergenic |
| AATTTAAACTTCAATCTTCT+TGG | 0.224181 | 7_3:+67726924 | None:intergenic |
| CCTATACTAATCGACGATTT+AGG | 0.238185 | 7_3:-67727173 | Msa1118940:three_prime_UTR |
| AGATATCATTAAGGTGTTTC+TGG | 0.239583 | 7_3:-67726786 | Msa1118940:three_prime_UTR |
| TATGAAGGTAAAAGATAAAA+TGG | 0.267207 | 7_3:-67726995 | Msa1118940:three_prime_UTR |
| GAGAAGGATATCTGTGTAAT+TGG | 0.301905 | 7_3:-67728757 | Msa1118940:CDS |
| ATCATTCTTGCATTGCCATC+AGG | 0.346115 | 7_3:-67727632 | Msa1118940:CDS |
| CCATGACAAATCAGTCAAAT+AGG | 0.348445 | 7_3:+67728006 | None:intergenic |
| TTACATTGATTTAATGTGAA+TGG | 0.362563 | 7_3:+67727298 | None:intergenic |
| ACCGAGACGTTCCCTACTTC+AGG | 0.368218 | 7_3:+67728034 | None:intergenic |
| ATAGAGGGTAGATATCATTA+AGG | 0.372203 | 7_3:-67726795 | Msa1118940:three_prime_UTR |
| TTTGAAAATTGTACCGAGAA+TGG | 0.375149 | 7_3:-67728350 | Msa1118940:CDS |
| GGATGCTGCGTTGCTTAAAA+TGG | 0.377981 | 7_3:-67727696 | Msa1118940:CDS |
| ATATGTTTCTGATAGCTAAC+TGG | 0.387088 | 7_3:+67728284 | None:intergenic |
| TGACTGAGGCATTCGAAGTA+TGG | 0.393117 | 7_3:-67727550 | Msa1118940:CDS |
| TGCATTGCCATCAGGGGATC+AGG | 0.394170 | 7_3:-67727624 | Msa1118940:CDS |
| CTGATAGCTAACTGGTTAAC+CGG | 0.398560 | 7_3:+67728292 | None:intergenic |
| GGTTGGAAAACGAGAATATA+CGG | 0.406032 | 7_3:-67727583 | Msa1118940:CDS |
| GCCAACTGCGAAACGTCTTA+AGG | 0.411212 | 7_3:-67727789 | Msa1118940:CDS |
| TTGAAAATTGTACCGAGAAT+GGG | 0.421104 | 7_3:-67728349 | Msa1118940:CDS |
| TTGGGAATAGGAAGAATATA+TGG | 0.421353 | 7_3:-67729991 | None:intergenic |
| CTGATCGGCTATCTGAGAAT+TGG | 0.421865 | 7_3:-67728627 | Msa1118940:CDS |
| CGCAAGAAGGTCGAGATGAT+TGG | 0.428744 | 7_3:-67728696 | Msa1118940:CDS |
| GGCAGAATCAATCACTGGTT+TGG | 0.436374 | 7_3:+67727733 | None:intergenic |
| GAGAAGACTCTCATTGTTAG+AGG | 0.440113 | 7_3:-67727504 | Msa1118940:CDS |
| TGGCGAAATGTGGCAATCTC+TGG | 0.442679 | 7_3:-67727672 | Msa1118940:CDS |
| AACCCTCCACGGTGTGTTGT+GGG | 0.456513 | 7_3:+67726665 | None:intergenic |
| TTGCCATCAGGGGATCAGGC+AGG | 0.460011 | 7_3:-67727620 | Msa1118940:CDS |
| AACCTTTGATGTTACCTCAA+TGG | 0.460071 | 7_3:+67727844 | None:intergenic |
| TGGCCAACTTGTCAGATACT+AGG | 0.460340 | 7_3:-67728607 | Msa1118940:CDS |
| GATTTCAGATCATTCATTGC+CGG | 0.460656 | 7_3:+67728223 | None:intergenic |
| CAAAAGGTAATTTATGTAGC+TGG | 0.466727 | 7_3:-67726882 | Msa1118940:three_prime_UTR |
| TGATGATAATATAAAATATG+AGG | 0.467539 | 7_3:-67728137 | Msa1118940:CDS |
| TCGAATGCCTCAGTCAGGTC+TGG | 0.468523 | 7_3:+67727557 | None:intergenic |
| TCAGGACTAGCTTTGCAACT+TGG | 0.470320 | 7_3:+67726544 | None:intergenic |
| CTTCTGTACGTTGTGGTCGA+TGG | 0.471656 | 7_3:-67728517 | Msa1118940:CDS |
| AAGAATGATAGAGACAAAAC+TGG | 0.473112 | 7_3:+67727646 | None:intergenic |
| CCTATTTGACTGATTTGTCA+TGG | 0.473152 | 7_3:-67728006 | Msa1118940:CDS |
| TTATGGCTTACAGCTTGTGC+TGG | 0.477488 | 7_3:+67729948 | None:intergenic |
| CGTAAGCATTATGCTGTGTT+GGG | 0.478656 | 7_3:+67727121 | None:intergenic |
| CCTAAATCGTCGATTAGTAT+AGG | 0.482262 | 7_3:+67727173 | None:intergenic |
| GCAGAATCACTTCCTGAAGT+AGG | 0.485646 | 7_3:-67728046 | Msa1118940:CDS |
| ACCTTAAGACGTTTCGCAGT+TGG | 0.488387 | 7_3:+67727788 | None:intergenic |
| TGCTACATCGTCGCCTCCAC+CGG | 0.488415 | 7_3:-67728242 | Msa1118940:CDS |
| CTATTTGACTGATTTGTCAT+GGG | 0.491380 | 7_3:-67728005 | Msa1118940:CDS |
| AGATCATTCATTGCCGGTGG+AGG | 0.499953 | 7_3:+67728229 | None:intergenic |
| ATGGTTCAGTTGATGATTTG+TGG | 0.499974 | 7_3:-67728498 | Msa1118940:CDS |
| TATCATCAGCGATCAACAAA+GGG | 0.504276 | 7_3:+67728152 | None:intergenic |
| GGTTTGGTAACCCTCACAAA+TGG | 0.504480 | 7_3:+67727749 | None:intergenic |
| TATCCTAGCTAGACTTCAAC+CGG | 0.505035 | 7_3:-67728311 | Msa1118940:CDS |
| TTTCTTGGTTTGAATTTCGA+AGG | 0.505329 | 7_3:-67727027 | Msa1118940:three_prime_UTR |
| ACGTAAGCATTATGCTGTGT+TGG | 0.505379 | 7_3:+67727120 | None:intergenic |
| CTCTTGACAGGAAAGGAGAA+AGG | 0.508362 | 7_3:-67727074 | Msa1118940:three_prime_UTR |
| AATTAAGGATAAGGAAGAGA+AGG | 0.512406 | 7_3:-67728773 | Msa1118940:intron |
| TGATTTAATGTGAATGGAGA+TGG | 0.514716 | 7_3:+67727304 | None:intergenic |
| GAGTCTTCTCCTTGCAACCT+TGG | 0.515051 | 7_3:+67727517 | None:intergenic |
| AATAAAACATGTGATTAGTG+TGG | 0.516680 | 7_3:-67726423 | Msa1118940:three_prime_UTR |
| TCAGTTGATGATTTGTGGCA+TGG | 0.516798 | 7_3:-67728493 | Msa1118940:CDS |
| CACAACACACCGTGGAGGGT+TGG | 0.519921 | 7_3:-67726663 | Msa1118940:three_prime_UTR |
| ATACTTCGAATGCCTCAGTC+AGG | 0.520495 | 7_3:+67727552 | None:intergenic |
| TCAGCTTGTAATCCCATTCT+CGG | 0.521850 | 7_3:+67728337 | None:intergenic |
| CGAAGGAGCATCATATATGA+AGG | 0.525772 | 7_3:-67727010 | Msa1118940:three_prime_UTR |
| TGCTGCGTGTGTGAAATACT+TGG | 0.525981 | 7_3:-67728410 | Msa1118940:CDS |
| GTCACAATGTAACCTGCAAA+AGG | 0.528041 | 7_3:-67726898 | Msa1118940:three_prime_UTR |
| ATGGGAAGAGAGTGAAGAGG+AGG | 0.529090 | 7_3:-67728377 | Msa1118940:CDS |
| TCATTCTTGCATTGCCATCA+GGG | 0.532419 | 7_3:-67727631 | Msa1118940:CDS |
| TGCCATCAGGGGATCAGGCA+GGG | 0.532443 | 7_3:-67727619 | Msa1118940:CDS |
| CAGAATCACTTCCTGAAGTA+GGG | 0.535661 | 7_3:-67728045 | Msa1118940:CDS |
| ATAAAACATGTGATTAGTGT+GGG | 0.540166 | 7_3:-67726422 | Msa1118940:three_prime_UTR |
| GACATATGCACGTATTTGCA+TGG | 0.540818 | 7_3:-67726575 | Msa1118940:three_prime_UTR |
| AATTGTGGCTTCCATTTGTG+AGG | 0.547715 | 7_3:-67727760 | Msa1118940:CDS |
| TATCAGAAACATATTTCTCT+CGG | 0.549893 | 7_3:-67728275 | Msa1118940:CDS |
| ACTGTACGCAGCAGAGATAG+AGG | 0.552451 | 7_3:-67726811 | Msa1118940:three_prime_UTR |
| TGAGTACTGGTTTGATGCAT+CGG | 0.555681 | 7_3:-67727939 | Msa1118940:CDS |
| GATAAAGTTGCGAGCCATTG+AGG | 0.559973 | 7_3:-67727858 | Msa1118940:CDS |
| GTTATAGATCCAAGGTTGCA+AGG | 0.561101 | 7_3:-67727526 | Msa1118940:CDS |
| TGAAGAAACTCAAGCTATAG+TGG | 0.563243 | 7_3:+67726691 | None:intergenic |
| GAACCTAGTATCTGACAAGT+TGG | 0.564864 | 7_3:+67728604 | None:intergenic |
| CCACAACATCACTAGTTGAT+CGG | 0.567045 | 7_3:+67728731 | None:intergenic |
| TAACCGGTTGAAGTCTAGCT+AGG | 0.567773 | 7_3:+67728308 | None:intergenic |
| GGGAACACATCAAATTGAGC+GGG | 0.568489 | 7_3:+67727450 | None:intergenic |
| TACTAATCGACGATTTAGGT+TGG | 0.572152 | 7_3:-67727169 | Msa1118940:three_prime_UTR |
| GTCATGGCAGAATCAATCAC+TGG | 0.572683 | 7_3:+67727728 | None:intergenic |
| TTCAGATCATTCATTGCCGG+TGG | 0.572901 | 7_3:+67728226 | None:intergenic |
| TATCAGCTTCCAACCCTCCA+CGG | 0.575299 | 7_3:+67726654 | None:intergenic |
| AGCCATTGAGGTAACATCAA+AGG | 0.577241 | 7_3:-67727846 | Msa1118940:CDS |
| AGCTGTTATTTGTTTGTGTG+AGG | 0.580734 | 7_3:-67726971 | Msa1118940:three_prime_UTR |
| TATCATTAAGGTGTTTCTGG+TGG | 0.581038 | 7_3:-67726783 | Msa1118940:three_prime_UTR |
| TAACACAAGGAGCTGTATGT+AGG | 0.585319 | 7_3:-67726758 | Msa1118940:three_prime_UTR |
| GTGATATTCTCTCCTTCACT+AGG | 0.587054 | 7_3:+67727384 | None:intergenic |
| CATGGTGTTAGAAATGCTCT+TGG | 0.588296 | 7_3:-67728475 | Msa1118940:CDS |
| GGTTGAAGTCTAGCTAGGAT+AGG | 0.590203 | 7_3:+67728313 | None:intergenic |
| CATTCTTGCATTGCCATCAG+GGG | 0.594583 | 7_3:-67727630 | Msa1118940:CDS |
| AGCCCTGCCTGATCCCCTGA+TGG | 0.596176 | 7_3:+67727617 | None:intergenic |
| TTATCATCAGCGATCAACAA+AGG | 0.597255 | 7_3:+67728151 | None:intergenic |
| GTGAGGCTACGCACGCAAGA+AGG | 0.597661 | 7_3:-67728709 | Msa1118940:CDS |
| TCTATCTCTGCTGCGTACAG+TGG | 0.602135 | 7_3:+67726813 | None:intergenic |
| TACCCACAACACACCGTGGA+GGG | 0.603325 | 7_3:-67726667 | Msa1118940:three_prime_UTR |
| AGTATGGTGTTATAGATCCA+AGG | 0.604280 | 7_3:-67727534 | Msa1118940:CDS |
| CTAAACTTCATGCCTAGTGA+AGG | 0.604938 | 7_3:-67727396 | Msa1118940:three_prime_UTR |
| AATACTTGGAAGCAATGACA+TGG | 0.605753 | 7_3:-67728396 | Msa1118940:CDS |
| TATTCGACTTCTGTACGTTG+TGG | 0.606306 | 7_3:-67728524 | Msa1118940:CDS |
| CTGTACGCAGCAGAGATAGA+GGG | 0.613915 | 7_3:-67726810 | Msa1118940:three_prime_UTR |
| CGGGAACACATCAAATTGAG+CGG | 0.618971 | 7_3:+67727449 | None:intergenic |
| GCTGCGTTGCTTAAAATGGA+TGG | 0.619104 | 7_3:-67727692 | Msa1118940:CDS |
| GAAGTCGAATAAAGTTTACA+TGG | 0.621468 | 7_3:+67728536 | None:intergenic |
| ACTGGTTTGATGCATCGGAA+AGG | 0.623195 | 7_3:-67727934 | Msa1118940:CDS |
| AGGAAGAATATATGGTACTG+TGG | 0.623222 | 7_3:-67729983 | Msa1118940:exon |
| TATCAATGAGTTGTTAAACC+CGG | 0.624215 | 7_3:+67728087 | None:intergenic |
| CCGATCAACTAGTGATGTTG+TGG | 0.627570 | 7_3:-67728731 | Msa1118940:CDS |
| AGCATCCTCACAATTCGTCA+TGG | 0.633088 | 7_3:+67727712 | None:intergenic |
| TCCTGAAGTAGGGAACGTCT+CGG | 0.633628 | 7_3:-67728035 | Msa1118940:CDS |
| GAGGCGACGATGTAGCAAAA+CGG | 0.638217 | 7_3:+67728248 | None:intergenic |
| TCATTGATACATTTACTCTG+TGG | 0.641194 | 7_3:-67728073 | Msa1118940:CDS |
| ATTGTGGCTTCCATTTGTGA+GGG | 0.644880 | 7_3:-67727759 | Msa1118940:CDS |
| TTAGGTTGGTGAGTGTGACA+TGG | 0.646783 | 7_3:-67727155 | Msa1118940:three_prime_UTR |
| AGCATGTCATGACACAGTAA+CGG | 0.650944 | 7_3:-67727478 | Msa1118940:exon |
| TACTTCAGGAAGTGATTCTG+CGG | 0.651160 | 7_3:+67728048 | None:intergenic |
| TTAAAATGGATGGCGAAATG+TGG | 0.673164 | 7_3:-67727682 | Msa1118940:CDS |
| ATACTTGGAAGCAATGACAT+GGG | 0.673251 | 7_3:-67728395 | Msa1118940:CDS |
| CTACCCACAACACACCGTGG+AGG | 0.674683 | 7_3:-67726668 | Msa1118940:three_prime_UTR |
| GTTTCTGGTGGAATAACACA+AGG | 0.674838 | 7_3:-67726771 | Msa1118940:three_prime_UTR |
| TGCTTACGTATGATGTCCTG+TGG | 0.678113 | 7_3:-67727106 | Msa1118940:three_prime_UTR |
| GACATGGGAAGAGAGTGAAG+AGG | 0.683633 | 7_3:-67728380 | Msa1118940:CDS |
| AAAGTACTTGAACTTGAACA+AGG | 0.686492 | 7_3:-67727905 | Msa1118940:CDS |
| ATCATCAGCGATCAACAAAG+GGG | 0.702082 | 7_3:+67728153 | None:intergenic |
| TTCTGCCATGACGAATTGTG+AGG | 0.703220 | 7_3:-67727717 | Msa1118940:CDS |
| TCACTACCCACAACACACCG+TGG | 0.723118 | 7_3:-67726671 | Msa1118940:three_prime_UTR |
| CAACTAGTGATGTTGTGGTG+AGG | 0.729111 | 7_3:-67728726 | Msa1118940:CDS |
| ACGGTATCCAGACCTGACTG+AGG | 0.735150 | 7_3:-67727564 | Msa1118940:CDS |
| ACTTGAGTACATGCTAACTG+AGG | 0.740737 | 7_3:-67728185 | Msa1118940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAAATTATAAAAACA+AGG | + | chr7_3:67726713-67726732 | None:intergenic | 10.0% |
| !!! | GTTTTTATAATTTCATTTTT+AGG | - | chr7_3:67726714-67726733 | Msa1118940:three_prime_UTR | 10.0% |
| !!! | AAAGATTGTTATTATATCAT+TGG | + | chr7_3:67726577-67726596 | None:intergenic | 15.0% |
| !!! | TCAATAATAATAAATGGATT+TGG | + | chr7_3:67727149-67727168 | None:intergenic | 15.0% |
| !! | TTCACTTCAATAATAATAAA+TGG | + | chr7_3:67727155-67727174 | None:intergenic | 15.0% |
| !! | TGATGATAATATAAAATATG+AGG | - | chr7_3:67728268-67728287 | Msa1118940:CDS | 15.0% |
| !! | ATATGAAATTTGAAGAAAAG+TGG | + | chr7_3:67726802-67726821 | None:intergenic | 20.0% |
| !! | AATTCTTTCATATCTTCAAT+TGG | - | chr7_3:67727115-67727134 | Msa1118940:three_prime_UTR | 20.0% |
| !! | AATATGTTTACTCTCAATTT+AGG | + | chr7_3:67727245-67727264 | None:intergenic | 20.0% |
| !! | TATCATTACTCCTAAATTTA+TGG | - | chr7_3:67727424-67727443 | Msa1118940:three_prime_UTR | 20.0% |
| !! | TAAAAGATTGTAAAAAACCT+CGG | + | chr7_3:67727554-67727573 | None:intergenic | 20.0% |
| !! | TATTACTAATTACAGATAAG+AGG | + | chr7_3:67727598-67727617 | None:intergenic | 20.0% |
| !! | AAGATTATCCTCTTTAATTA+AGG | - | chr7_3:67727617-67727636 | Msa1118940:CDS | 20.0% |
| !!! | AGAATAGTACTTAAATTTTG+AGG | + | chr7_3:67728991-67729010 | None:intergenic | 20.0% |
| !!! | TTACATTGATTTAATGTGAA+TGG | + | chr7_3:67729110-67729129 | None:intergenic | 20.0% |
| !! | TATGAAGGTAAAAGATAAAA+TGG | - | chr7_3:67729410-67729429 | Msa1118940:intron | 20.0% |
| !! | AATTTAAACTTCAATCTTCT+TGG | + | chr7_3:67729484-67729503 | None:intergenic | 20.0% |
| !!! | TACAAATAGAAAGTATTTTC+AGG | + | chr7_3:67729882-67729901 | None:intergenic | 20.0% |
| !!! | TTTTCGAATTATTTTCCTAT+TGG | - | chr7_3:67729934-67729953 | Msa1118940:intron | 20.0% |
| !! | ATTTGATGCATAAAAACAAT+TGG | + | chr7_3:67729960-67729979 | None:intergenic | 20.0% |
| ! | AGTTAGAAAGATAAGGAAAT+AGG | + | chr7_3:67726685-67726704 | None:intergenic | 25.0% |
| !! | ATTCATATTATAGCTCTGTT+TGG | - | chr7_3:67726822-67726841 | Msa1118940:three_prime_UTR | 25.0% |
| !! | GTATAAGCTATAAGCTATTT+TGG | - | chr7_3:67726950-67726969 | Msa1118940:three_prime_UTR | 25.0% |
| ! | TAAACACTTGTGAATTGTTT+GGG | + | chr7_3:67727047-67727066 | None:intergenic | 25.0% |
| ! | ATAAACACTTGTGAATTGTT+TGG | + | chr7_3:67727048-67727067 | None:intergenic | 25.0% |
| ! | CAAATAAACCAATCCAAAAA+TGG | - | chr7_3:67727083-67727102 | Msa1118940:three_prime_UTR | 25.0% |
| ! | GATATGAAAGAATTGACATA+GGG | + | chr7_3:67727109-67727128 | None:intergenic | 25.0% |
| ! | AGATATGAAAGAATTGACAT+AGG | + | chr7_3:67727110-67727129 | None:intergenic | 25.0% |
| ! | TCATAAAAGTTGAGACAAAA+TGG | + | chr7_3:67727275-67727294 | None:intergenic | 25.0% |
| ! | ATGATATTTGTACAACCATT+TGG | + | chr7_3:67727410-67727429 | None:intergenic | 25.0% |
| ! | ATCCTCTTTAATTAAGGATA+AGG | - | chr7_3:67727623-67727642 | Msa1118940:CDS | 25.0% |
| ! | TTCCTTATCCTTAATTAAAG+AGG | + | chr7_3:67727628-67727647 | None:intergenic | 25.0% |
| ! | TATCAGAAACATATTTCTCT+CGG | - | chr7_3:67728130-67728149 | Msa1118940:CDS | 25.0% |
| !! | TGTGTAAAAAGACTATTTTC+CGG | - | chr7_3:67728299-67728318 | Msa1118940:CDS | 25.0% |
| !!! | AAATTTTGAGGAACATAGTT+CGG | + | chr7_3:67728979-67728998 | None:intergenic | 25.0% |
| ! | AATAAAACATGTGATTAGTG+TGG | - | chr7_3:67729982-67730001 | Msa1118940:exon | 25.0% |
| TGAGGATTTCAAGAATCAAA+GGG | + | chr7_3:67726486-67726505 | None:intergenic | 30.0% | |
| ATGAGGATTTCAAGAATCAA+AGG | + | chr7_3:67726487-67726506 | None:intergenic | 30.0% | |
| TATATCATTGGAATTGAGCA+TGG | + | chr7_3:67726565-67726584 | None:intergenic | 30.0% | |
| TTAGGTCGAAAAATCAAATG+CGG | + | chr7_3:67726607-67726626 | None:intergenic | 30.0% | |
| TAACTTCTTCAAGATCCATA+CGG | - | chr7_3:67726624-67726643 | Msa1118940:three_prime_UTR | 30.0% | |
| GGATTAGAGTTAGAAAGATA+AGG | + | chr7_3:67726692-67726711 | None:intergenic | 30.0% | |
| ! | AACTTGCTTCTTGATTTCAA+TGG | - | chr7_3:67726754-67726773 | Msa1118940:three_prime_UTR | 30.0% |
| AAAGTGGAAAAGCAAACTTA+CGG | + | chr7_3:67726786-67726805 | None:intergenic | 30.0% | |
| ! | AATAATAAATGGATTTGGCC+AGG | + | chr7_3:67727144-67727163 | None:intergenic | 30.0% |
| ! | TTGATTTTGTCCCAAAACAA+GGG | + | chr7_3:67727309-67727328 | None:intergenic | 30.0% |
| !! | ATTGATTTTGTCCCAAAACA+AGG | + | chr7_3:67727310-67727329 | None:intergenic | 30.0% |
| TACTCCTAAATTTATGGTGT+CGG | - | chr7_3:67727430-67727449 | Msa1118940:three_prime_UTR | 30.0% | |
| AATACCGACACCATAAATTT+AGG | + | chr7_3:67727437-67727456 | None:intergenic | 30.0% | |
| AATTAAGGATAAGGAAGAGA+AGG | - | chr7_3:67727632-67727651 | Msa1118940:CDS | 30.0% | |
| ! | ATTGCAAGTATTTTGCTGAT+CGG | - | chr7_3:67727763-67727782 | Msa1118940:CDS | 30.0% |
| GAAGTCGAATAAAGTTTACA+TGG | + | chr7_3:67727872-67727891 | None:intergenic | 30.0% | |
| TTTGAAAATTGTACCGAGAA+TGG | - | chr7_3:67728055-67728074 | Msa1118940:CDS | 30.0% | |
| TTGAAAATTGTACCGAGAAT+GGG | - | chr7_3:67728056-67728075 | Msa1118940:CDS | 30.0% | |
| ! | ATATGTTTCTGATAGCTAAC+TGG | + | chr7_3:67728124-67728143 | None:intergenic | 30.0% |
| ! | GTGTAAAAAGACTATTTTCC+GGG | - | chr7_3:67728300-67728319 | Msa1118940:CDS | 30.0% |
| TATCAATGAGTTGTTAAACC+CGG | + | chr7_3:67728321-67728340 | None:intergenic | 30.0% | |
| TCATTGATACATTTACTCTG+TGG | - | chr7_3:67728332-67728351 | Msa1118940:CDS | 30.0% | |
| !! | CTATTTGACTGATTTGTCAT+GGG | - | chr7_3:67728400-67728419 | Msa1118940:CDS | 30.0% |
| ! | AAAGTACTTGAACTTGAACA+AGG | - | chr7_3:67728500-67728519 | Msa1118940:CDS | 30.0% |
| !!! | GTCTTAAGGTTTTGAAATTG+TGG | - | chr7_3:67728630-67728649 | Msa1118940:CDS | 30.0% |
| AAGAATGATAGAGACAAAAC+TGG | + | chr7_3:67728762-67728781 | None:intergenic | 30.0% | |
| !! | AATTTTGAGGAACATAGTTC+GGG | + | chr7_3:67728978-67728997 | None:intergenic | 30.0% |
| !!! | ACCTCTTTTTTACATGTGAA+TGG | - | chr7_3:67729042-67729061 | Msa1118940:intron | 30.0% |
| !!! | CCTCTTTTTTACATGTGAAT+GGG | - | chr7_3:67729043-67729062 | Msa1118940:intron | 30.0% |
| !! | TGTGAATGGGATATTTTTGT+AGG | - | chr7_3:67729056-67729075 | Msa1118940:intron | 30.0% |
| TGATTTAATGTGAATGGAGA+TGG | + | chr7_3:67729104-67729123 | None:intergenic | 30.0% | |
| !!! | TTTTTTACTCTTGACAGGAA+AGG | - | chr7_3:67729324-67729343 | Msa1118940:intron | 30.0% |
| ! | TTTCTTGGTTTGAATTTCGA+AGG | - | chr7_3:67729378-67729397 | Msa1118940:intron | 30.0% |
| ! | CTACATAAATTACCTTTTGC+AGG | + | chr7_3:67729522-67729541 | None:intergenic | 30.0% |
| CAAAAGGTAATTTATGTAGC+TGG | - | chr7_3:67729523-67729542 | Msa1118940:intron | 30.0% | |
| ACAAAGTTCCAAAAATGTCT+CGG | + | chr7_3:67729555-67729574 | None:intergenic | 30.0% | |
| !!! | TTTTGGAACTTTGTTACAAG+TGG | - | chr7_3:67729561-67729580 | Msa1118940:intron | 30.0% |
| ATAGAGGGTAGATATCATTA+AGG | - | chr7_3:67729610-67729629 | Msa1118940:intron | 30.0% | |
| ! | AGATATCATTAAGGTGTTTC+TGG | - | chr7_3:67729619-67729638 | Msa1118940:intron | 30.0% |
| !! | AATACGTGCATATGTCATTT+TGG | + | chr7_3:67729826-67729845 | None:intergenic | 30.0% |
| GATCTGCACATAAAAATATG+TGG | + | chr7_3:67729906-67729925 | None:intergenic | 30.0% | |
| CATAAAAACAATTGGCCAAT+AGG | + | chr7_3:67729952-67729971 | None:intergenic | 30.0% | |
| AGGAAGAATATATGGTACTG+TGG | - | chr7_3:67726422-67726441 | Msa1118940:three_prime_UTR | 35.0% | |
| CAAGAATCAAAGGGATCTTA+TGG | + | chr7_3:67726477-67726496 | None:intergenic | 35.0% | |
| GTATGGATCTTGAAGAAGTT+AGG | + | chr7_3:67726625-67726644 | None:intergenic | 35.0% | |
| !! | AATTGACATAGGGCCATTTT+TGG | + | chr7_3:67727099-67727118 | None:intergenic | 35.0% |
| CATATCTTCAATTGGATTCC+TGG | - | chr7_3:67727123-67727142 | Msa1118940:three_prime_UTR | 35.0% | |
| ! | TGATTTTGTCCCAAAACAAG+GGG | + | chr7_3:67727308-67727327 | None:intergenic | 35.0% |
| AAAATCAATAGAGCGAGAGA+GGG | - | chr7_3:67727321-67727340 | Msa1118940:three_prime_UTR | 35.0% | |
| TCTCAAAAGTTGTCACCAAA+TGG | - | chr7_3:67727392-67727411 | Msa1118940:three_prime_UTR | 35.0% | |
| CTAATTACAGATAAGAGGAG+AGG | + | chr7_3:67727593-67727612 | None:intergenic | 35.0% | |
| GAGAAGGATATCTGTGTAAT+TGG | - | chr7_3:67727648-67727667 | Msa1118940:CDS | 35.0% | |
| !! | ATGGTTCAGTTGATGATTTG+TGG | - | chr7_3:67727907-67727926 | Msa1118940:CDS | 35.0% |
| AATACTTGGAAGCAATGACA+TGG | - | chr7_3:67728009-67728028 | Msa1118940:CDS | 35.0% | |
| ATACTTGGAAGCAATGACAT+GGG | - | chr7_3:67728010-67728029 | Msa1118940:CDS | 35.0% | |
| GATTTCAGATCATTCATTGC+CGG | + | chr7_3:67728185-67728204 | None:intergenic | 35.0% | |
| TATCATCAGCGATCAACAAA+GGG | + | chr7_3:67728256-67728275 | None:intergenic | 35.0% | |
| TTATCATCAGCGATCAACAA+AGG | + | chr7_3:67728257-67728276 | None:intergenic | 35.0% | |
| CCATGACAAATCAGTCAAAT+AGG | + | chr7_3:67728402-67728421 | None:intergenic | 35.0% | |
| !! | CCTATTTGACTGATTTGTCA+TGG | - | chr7_3:67728399-67728418 | Msa1118940:CDS | 35.0% |
| ! | TGAGAGATTTTGTTGAGTAC+TGG | - | chr7_3:67728453-67728472 | Msa1118940:CDS | 35.0% |
| AACCTTTGATGTTACCTCAA+TGG | + | chr7_3:67728564-67728583 | None:intergenic | 35.0% | |
| !! | GGTAACATCAAAGGTTTTAG+AGG | - | chr7_3:67728568-67728587 | Msa1118940:CDS | 35.0% |
| !!! | GTTTTAGAGGCAATTGCTTA+TGG | - | chr7_3:67728581-67728600 | Msa1118940:CDS | 35.0% |
| TTAAAATGGATGGCGAAATG+TGG | - | chr7_3:67728723-67728742 | Msa1118940:CDS | 35.0% | |
| GGTTGGAAAACGAGAATATA+CGG | - | chr7_3:67728822-67728841 | Msa1118940:intron | 35.0% | |
| !! | AGTATGGTGTTATAGATCCA+AGG | - | chr7_3:67728871-67728890 | Msa1118940:intron | 35.0% |
| CCCATTCACATGTAAAAAAG+AGG | + | chr7_3:67729046-67729065 | None:intergenic | 35.0% | |
| !! | GAATGGGATATTTTTGTAGG+AGG | - | chr7_3:67729059-67729078 | Msa1118940:intron | 35.0% |
| !!! | GTGCACTATTTTGATTACTC+TGG | + | chr7_3:67729206-67729225 | None:intergenic | 35.0% |
| ! | CCTAAATCGTCGATTAGTAT+AGG | + | chr7_3:67729235-67729254 | None:intergenic | 35.0% |
| CCTATACTAATCGACGATTT+AGG | - | chr7_3:67729232-67729251 | Msa1118940:intron | 35.0% | |
| TACTAATCGACGATTTAGGT+TGG | - | chr7_3:67729236-67729255 | Msa1118940:intron | 35.0% | |
| TCAAGAGTAAAAAACACCAC+AGG | + | chr7_3:67729318-67729337 | None:intergenic | 35.0% | |
| !!! | TGGTGTTTTTTACTCTTGAC+AGG | - | chr7_3:67729319-67729338 | Msa1118940:intron | 35.0% |
| ! | ATATCGAAGAACGCTTTTCT+TGG | - | chr7_3:67729363-67729382 | Msa1118940:intron | 35.0% |
| ! | AGCTGTTATTTGTTTGTGTG+AGG | - | chr7_3:67729434-67729453 | Msa1118940:intron | 35.0% |
| !! | TATCATTAAGGTGTTTCTGG+TGG | - | chr7_3:67729622-67729641 | Msa1118940:intron | 35.0% |
| TGAAGAAACTCAAGCTATAG+TGG | + | chr7_3:67729717-67729736 | None:intergenic | 35.0% | |
| TTGGAATTGAGCATGGAACA+AGG | + | chr7_3:67726558-67726577 | None:intergenic | 40.0% | |
| GTGAGAAATGAAAGACCGTA+TGG | + | chr7_3:67726642-67726661 | None:intergenic | 40.0% | |
| GGTGAAAACAAGAACATGAG+TGG | + | chr7_3:67726664-67726683 | None:intergenic | 40.0% | |
| TGGAAAAGCAAACTTACGGT+AGG | + | chr7_3:67726782-67726801 | None:intergenic | 40.0% | |
| !!! | ACATAGGGCCATTTTTGGAT+TGG | + | chr7_3:67727094-67727113 | None:intergenic | 40.0% |
| !!! | AACCTTCATCCCCTTGTTTT+GGG | - | chr7_3:67727296-67727315 | Msa1118940:three_prime_UTR | 40.0% |
| CAAAATCAATAGAGCGAGAG+AGG | - | chr7_3:67727320-67727339 | Msa1118940:three_prime_UTR | 40.0% | |
| CCAACTTCTTCTACTAACTG+AGG | + | chr7_3:67727482-67727501 | None:intergenic | 40.0% | |
| CCTCAGTTAGTAGAAGAAGT+TGG | - | chr7_3:67727479-67727498 | Msa1118940:exon | 40.0% | |
| CTAACTTCTTCTACTAACCG+AGG | - | chr7_3:67727534-67727553 | Msa1118940:CDS | 40.0% | |
| CCACAACATCACTAGTTGAT+CGG | + | chr7_3:67727677-67727696 | None:intergenic | 40.0% | |
| GAACCTAGTATCTGACAAGT+TGG | + | chr7_3:67727804-67727823 | None:intergenic | 40.0% | |
| TATTCGACTTCTGTACGTTG+TGG | - | chr7_3:67727881-67727900 | Msa1118940:CDS | 40.0% | |
| !! | TCAGTTGATGATTTGTGGCA+TGG | - | chr7_3:67727912-67727931 | Msa1118940:CDS | 40.0% |
| ! | CATGGTGTTAGAAATGCTCT+TGG | - | chr7_3:67727930-67727949 | Msa1118940:CDS | 40.0% |
| ! | ACACACGCAGCAACAATTTT+CGG | + | chr7_3:67727987-67728006 | None:intergenic | 40.0% |
| TCAGCTTGTAATCCCATTCT+CGG | + | chr7_3:67728071-67728090 | None:intergenic | 40.0% | |
| TATCCTAGCTAGACTTCAAC+CGG | - | chr7_3:67728094-67728113 | Msa1118940:CDS | 40.0% | |
| CTGATAGCTAACTGGTTAAC+CGG | + | chr7_3:67728116-67728135 | None:intergenic | 40.0% | |
| ACTTGAGTACATGCTAACTG+AGG | - | chr7_3:67728220-67728239 | Msa1118940:CDS | 40.0% | |
| ATCATCAGCGATCAACAAAG+GGG | + | chr7_3:67728255-67728274 | None:intergenic | 40.0% | |
| TACTTCAGGAAGTGATTCTG+CGG | + | chr7_3:67728360-67728379 | None:intergenic | 40.0% | |
| CAGAATCACTTCCTGAAGTA+GGG | - | chr7_3:67728360-67728379 | Msa1118940:CDS | 40.0% | |
| !! | TGAGTACTGGTTTGATGCAT+CGG | - | chr7_3:67728466-67728485 | Msa1118940:CDS | 40.0% |
| AGCCATTGAGGTAACATCAA+AGG | - | chr7_3:67728559-67728578 | Msa1118940:CDS | 40.0% | |
| AATTGTGGCTTCCATTTGTG+AGG | - | chr7_3:67728645-67728664 | Msa1118940:CDS | 40.0% | |
| ATTGTGGCTTCCATTTGTGA+GGG | - | chr7_3:67728646-67728665 | Msa1118940:CDS | 40.0% | |
| ATCATTCTTGCATTGCCATC+AGG | - | chr7_3:67728773-67728792 | Msa1118940:intron | 40.0% | |
| TCATTCTTGCATTGCCATCA+GGG | - | chr7_3:67728774-67728793 | Msa1118940:intron | 40.0% | |
| !! | AGGGCTTTTAACTGAATGGT+TGG | - | chr7_3:67728805-67728824 | Msa1118940:intron | 40.0% |
| GTTATAGATCCAAGGTTGCA+AGG | - | chr7_3:67728879-67728898 | Msa1118940:intron | 40.0% | |
| GAGAAGACTCTCATTGTTAG+AGG | - | chr7_3:67728901-67728920 | Msa1118940:intron | 40.0% | |
| AGCATGTCATGACACAGTAA+CGG | - | chr7_3:67728927-67728946 | Msa1118940:intron | 40.0% | |
| CTAAACTTCATGCCTAGTGA+AGG | - | chr7_3:67729009-67729028 | Msa1118940:intron | 40.0% | |
| GTGATATTCTCTCCTTCACT+AGG | + | chr7_3:67729024-67729043 | None:intergenic | 40.0% | |
| CGTAAGCATTATGCTGTGTT+GGG | + | chr7_3:67729287-67729306 | None:intergenic | 40.0% | |
| ACGTAAGCATTATGCTGTGT+TGG | + | chr7_3:67729288-67729307 | None:intergenic | 40.0% | |
| !! | CGAAGGAGCATCATATATGA+AGG | - | chr7_3:67729395-67729414 | Msa1118940:intron | 40.0% |
| GTCACAATGTAACCTGCAAA+AGG | - | chr7_3:67729507-67729526 | Msa1118940:intron | 40.0% | |
| !! | GTTTCTGGTGGAATAACACA+AGG | - | chr7_3:67729634-67729653 | Msa1118940:intron | 40.0% |
| TAACACAAGGAGCTGTATGT+AGG | - | chr7_3:67729647-67729666 | Msa1118940:intron | 40.0% | |
| !!! | CATTTTGGAACATCTCTCGT+GGG | + | chr7_3:67729811-67729830 | None:intergenic | 40.0% |
| !!! | TCATTTTGGAACATCTCTCG+TGG | + | chr7_3:67729812-67729831 | None:intergenic | 40.0% |
| GACATATGCACGTATTTGCA+TGG | - | chr7_3:67729830-67729849 | Msa1118940:intron | 40.0% | |
| TTATGGCTTACAGCTTGTGC+TGG | + | chr7_3:67726460-67726479 | None:intergenic | 45.0% | |
| !! | CAACCTTCATCCCCTTGTTT+TGG | - | chr7_3:67727295-67727314 | Msa1118940:three_prime_UTR | 45.0% |
| CCGATCAACTAGTGATGTTG+TGG | - | chr7_3:67727674-67727693 | Msa1118940:CDS | 45.0% | |
| CAACTAGTGATGTTGTGGTG+AGG | - | chr7_3:67727679-67727698 | Msa1118940:CDS | 45.0% | |
| CTGATCGGCTATCTGAGAAT+TGG | - | chr7_3:67727778-67727797 | Msa1118940:CDS | 45.0% | |
| TGGCCAACTTGTCAGATACT+AGG | - | chr7_3:67727798-67727817 | Msa1118940:CDS | 45.0% | |
| TGCTGCGTGTGTGAAATACT+TGG | - | chr7_3:67727995-67728014 | Msa1118940:CDS | 45.0% | |
| GGTTGAAGTCTAGCTAGGAT+AGG | + | chr7_3:67728095-67728114 | None:intergenic | 45.0% | |
| TAACCGGTTGAAGTCTAGCT+AGG | + | chr7_3:67728100-67728119 | None:intergenic | 45.0% | |
| TTCAGATCATTCATTGCCGG+TGG | + | chr7_3:67728182-67728201 | None:intergenic | 45.0% | |
| GCAGAATCACTTCCTGAAGT+AGG | - | chr7_3:67728359-67728378 | Msa1118940:CDS | 45.0% | |
| !! | ACTGGTTTGATGCATCGGAA+AGG | - | chr7_3:67728471-67728490 | Msa1118940:CDS | 45.0% |
| GATAAAGTTGCGAGCCATTG+AGG | - | chr7_3:67728547-67728566 | Msa1118940:CDS | 45.0% | |
| ACCTTAAGACGTTTCGCAGT+TGG | + | chr7_3:67728620-67728639 | None:intergenic | 45.0% | |
| ! | GGTTTGGTAACCCTCACAAA+TGG | + | chr7_3:67728659-67728678 | None:intergenic | 45.0% |
| ! | GGCAGAATCAATCACTGGTT+TGG | + | chr7_3:67728675-67728694 | None:intergenic | 45.0% |
| GTCATGGCAGAATCAATCAC+TGG | + | chr7_3:67728680-67728699 | None:intergenic | 45.0% | |
| TTCTGCCATGACGAATTGTG+AGG | - | chr7_3:67728688-67728707 | Msa1118940:CDS | 45.0% | |
| AGCATCCTCACAATTCGTCA+TGG | + | chr7_3:67728696-67728715 | None:intergenic | 45.0% | |
| GGATGCTGCGTTGCTTAAAA+TGG | - | chr7_3:67728709-67728728 | Msa1118940:CDS | 45.0% | |
| GCTGCGTTGCTTAAAATGGA+TGG | - | chr7_3:67728713-67728732 | Msa1118940:CDS | 45.0% | |
| CATTCTTGCATTGCCATCAG+GGG | - | chr7_3:67728775-67728794 | Msa1118940:intron | 45.0% | |
| !! | AGGCAGGGCTTTTAACTGAA+TGG | - | chr7_3:67728801-67728820 | Msa1118940:intron | 45.0% |
| ATACTTCGAATGCCTCAGTC+AGG | + | chr7_3:67728856-67728875 | None:intergenic | 45.0% | |
| ! | TGACTGAGGCATTCGAAGTA+TGG | - | chr7_3:67728855-67728874 | Msa1118940:intron | 45.0% |
| GGGAACACATCAAATTGAGC+GGG | + | chr7_3:67728958-67728977 | None:intergenic | 45.0% | |
| CGGGAACACATCAAATTGAG+CGG | + | chr7_3:67728959-67728978 | None:intergenic | 45.0% | |
| !! | TTAGGTTGGTGAGTGTGACA+TGG | - | chr7_3:67729250-67729269 | Msa1118940:intron | 45.0% |
| TGCTTACGTATGATGTCCTG+TGG | - | chr7_3:67729299-67729318 | Msa1118940:intron | 45.0% | |
| CTCTTGACAGGAAAGGAGAA+AGG | - | chr7_3:67729331-67729350 | Msa1118940:intron | 45.0% | |
| ! | GGCATGAACCGAGACATTTT+TGG | - | chr7_3:67729544-67729563 | Msa1118940:intron | 45.0% |
| !! | TCAGGACTAGCTTTGCAACT+TGG | + | chr7_3:67729864-67729883 | None:intergenic | 45.0% |
| GAGAGAGAGAGAGAGGAATG+AGG | + | chr7_3:67726504-67726523 | None:intergenic | 50.0% | |
| TCCTCTCTCTCTCTCTCTCA+AGG | - | chr7_3:67726507-67726526 | Msa1118940:three_prime_UTR | 50.0% | |
| CCTCTCTCTCTCTCTCTCAA+GGG | - | chr7_3:67726508-67726527 | Msa1118940:three_prime_UTR | 50.0% | |
| GTCCCAAAACAAGGGGATGA+AGG | + | chr7_3:67727301-67727320 | None:intergenic | 50.0% | |
| AATAGAGCGAGAGAGGGAGA+GGG | - | chr7_3:67727327-67727346 | Msa1118940:three_prime_UTR | 50.0% | |
| ! | GAGGAGAGGCTCTGACTATT+GGG | + | chr7_3:67727579-67727598 | None:intergenic | 50.0% |
| ! | AGAGGAGAGGCTCTGACTAT+TGG | + | chr7_3:67727580-67727599 | None:intergenic | 50.0% |
| CGCAAGAAGGTCGAGATGAT+TGG | - | chr7_3:67727709-67727728 | Msa1118940:CDS | 50.0% | |
| CTTCTGTACGTTGTGGTCGA+TGG | - | chr7_3:67727888-67727907 | Msa1118940:CDS | 50.0% | |
| GACATGGGAAGAGAGTGAAG+AGG | - | chr7_3:67728025-67728044 | Msa1118940:CDS | 50.0% | |
| ATGGGAAGAGAGTGAAGAGG+AGG | - | chr7_3:67728028-67728047 | Msa1118940:CDS | 50.0% | |
| GAGGCGACGATGTAGCAAAA+CGG | + | chr7_3:67728160-67728179 | None:intergenic | 50.0% | |
| AGATCATTCATTGCCGGTGG+AGG | + | chr7_3:67728179-67728198 | None:intergenic | 50.0% | |
| TCCTGAAGTAGGGAACGTCT+CGG | - | chr7_3:67728370-67728389 | Msa1118940:CDS | 50.0% | |
| GCCAACTGCGAAACGTCTTA+AGG | - | chr7_3:67728616-67728635 | Msa1118940:CDS | 50.0% | |
| TGGCGAAATGTGGCAATCTC+TGG | - | chr7_3:67728733-67728752 | Msa1118940:CDS | 50.0% | |
| GAGTCTTCTCCTTGCAACCT+TGG | + | chr7_3:67728891-67728910 | None:intergenic | 50.0% | |
| TCTATCTCTGCTGCGTACAG+TGG | + | chr7_3:67729595-67729614 | None:intergenic | 50.0% | |
| ACTGTACGCAGCAGAGATAG+AGG | - | chr7_3:67729594-67729613 | Msa1118940:intron | 50.0% | |
| CTGTACGCAGCAGAGATAGA+GGG | - | chr7_3:67729595-67729614 | Msa1118940:intron | 50.0% | |
| TATCAGCTTCCAACCCTCCA+CGG | + | chr7_3:67729754-67729773 | None:intergenic | 50.0% | |
| ! | CATCTCTCGTGGGCTTTTCA+TGG | + | chr7_3:67729801-67729820 | None:intergenic | 50.0% |
| CCCTTGAGAGAGAGAGAGAG+AGG | + | chr7_3:67726511-67726530 | None:intergenic | 55.0% | |
| CAATAGAGCGAGAGAGGGAG+AGG | - | chr7_3:67727326-67727345 | Msa1118940:three_prime_UTR | 55.0% | |
| ACCGAGACGTTCCCTACTTC+AGG | + | chr7_3:67728374-67728393 | None:intergenic | 55.0% | |
| TGCATTGCCATCAGGGGATC+AGG | - | chr7_3:67728781-67728800 | Msa1118940:intron | 55.0% | |
| ACGGTATCCAGACCTGACTG+AGG | - | chr7_3:67728841-67728860 | Msa1118940:intron | 55.0% | |
| TCGAATGCCTCAGTCAGGTC+TGG | + | chr7_3:67728851-67728870 | None:intergenic | 55.0% | |
| TCACTACCCACAACACACCG+TGG | - | chr7_3:67729734-67729753 | Msa1118940:intron | 55.0% | |
| TACCCACAACACACCGTGGA+GGG | - | chr7_3:67729738-67729757 | Msa1118940:intron | 55.0% | |
| AACCCTCCACGGTGTGTTGT+GGG | + | chr7_3:67729743-67729762 | None:intergenic | 55.0% | |
| GTGAGGCTACGCACGCAAGA+AGG | - | chr7_3:67727696-67727715 | Msa1118940:CDS | 60.0% | |
| TGCTACATCGTCGCCTCCAC+CGG | - | chr7_3:67728163-67728182 | Msa1118940:CDS | 60.0% | |
| TTGCCATCAGGGGATCAGGC+AGG | - | chr7_3:67728785-67728804 | Msa1118940:intron | 60.0% | |
| TGCCATCAGGGGATCAGGCA+GGG | - | chr7_3:67728786-67728805 | Msa1118940:intron | 60.0% | |
| CTACCCACAACACACCGTGG+AGG | - | chr7_3:67729737-67729756 | Msa1118940:intron | 60.0% | |
| CAACCCTCCACGGTGTGTTG+TGG | + | chr7_3:67729744-67729763 | None:intergenic | 60.0% | |
| CACAACACACCGTGGAGGGT+TGG | - | chr7_3:67729742-67729761 | Msa1118940:intron | 60.0% | |
| AGCCCTGCCTGATCCCCTGA+TGG | + | chr7_3:67728791-67728810 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 67726422 | 67730005 | 67726422 | ID=Msa1118940;Name=Msa1118940 |
| chr7_3 | mRNA | 67726422 | 67730005 | 67726422 | ID=Msa1118940-mRNA-1;Parent=Msa1118940;Name=Msa1118940-mRNA-1;_AED=0.06;_eAED=0.06;_QI=11|0|1|1|1|1|2|1059|447 |
| chr7_3 | exon | 67726422 | 67728788 | 67726422 | ID=Msa1118940-mRNA-1:exon:16757;Parent=Msa1118940-mRNA-1 |
| chr7_3 | exon | 67729959 | 67730005 | 67729959 | ID=Msa1118940-mRNA-1:exon:16756;Parent=Msa1118940-mRNA-1 |
| chr7_3 | five_prime_UTR | 67729995 | 67730005 | 67729995 | ID=Msa1118940-mRNA-1:five_prime_utr;Parent=Msa1118940-mRNA-1 |
| chr7_3 | CDS | 67729959 | 67729994 | 67729959 | ID=Msa1118940-mRNA-1:cds;Parent=Msa1118940-mRNA-1 |
| chr7_3 | CDS | 67727481 | 67728788 | 67727481 | ID=Msa1118940-mRNA-1:cds;Parent=Msa1118940-mRNA-1 |
| chr7_3 | three_prime_UTR | 67726422 | 67727480 | 67726422 | ID=Msa1118940-mRNA-1:three_prime_utr;Parent=Msa1118940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
