AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1351990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1351990 MtrunA17_Chr7g0254261 94.795 365 10 2 1 365 1 356 0.0 699
Msa1351990 MtrunA17_Chr6g0460671 49.695 328 131 7 34 361 52 345 1.25e-80 250
Msa1351990 MtrunA17_Chr4g0042501 75.000 140 35 0 64 203 78 217 1.23e-74 237
Msa1351990 MtrunA17_Chr5g0417621 42.236 322 137 10 84 363 127 441 8.69e-71 228
Msa1351990 MtrunA17_Chr3g0125801 42.295 305 128 7 86 365 11 292 3.99e-62 201
Msa1351990 MtrunA17_Chr6g0480581 73.214 112 30 0 88 199 1 112 1.01e-60 195
Msa1351990 MtrunA17_Chr6g0460661 57.143 119 51 0 90 208 15 133 5.10e-46 154
Msa1351990 MtrunA17_Chr4g0008551 59.406 101 41 0 91 191 38 138 5.11e-40 144
Msa1351990 MtrunA17_Chr5g0401731 46.617 133 62 2 91 223 15 138 1.16e-37 137
Msa1351990 MtrunA17_Chr4g0053431 55.446 101 45 0 91 191 5 105 3.68e-37 135
Msa1351990 MtrunA17_Chr3g0133601 56.436 101 44 0 91 191 37 137 1.57e-36 132
Msa1351990 MtrunA17_Chr6g0454921 50.495 101 50 0 91 191 15 115 2.28e-34 125
Msa1351990 MtrunA17_Chr1g0157731 44.444 135 70 2 61 191 58 191 1.73e-32 129
Msa1351990 MtrunA17_Chr3g0139671 42.963 135 72 2 61 191 52 185 2.25e-32 128
Msa1351990 MtrunA17_Chr7g0238631 53.465 101 47 0 91 191 113 213 9.30e-32 125
Msa1351990 MtrunA17_Chr5g0429661 41.379 174 97 2 86 258 117 286 3.08e-31 121
Msa1351990 MtrunA17_Chr5g0437321 52.632 95 45 0 91 185 19 113 3.41e-31 119
Msa1351990 MtrunA17_Chr3g0117511 38.068 176 102 4 91 262 183 355 6.36e-29 116
Msa1351990 MtrunA17_Chr7g0228401 31.154 260 154 6 50 290 236 489 7.99e-27 111
Msa1351990 MtrunA17_Chr4g0058991 31.746 189 118 2 28 216 157 334 1.78e-26 109
Msa1351990 MtrunA17_Chr3g0103281 46.078 102 54 1 91 191 14 115 2.40e-26 107
Msa1351990 MtrunA17_Chr5g0397841 52.174 92 44 0 94 185 113 204 3.48e-26 108
Msa1351990 MtrunA17_Chr4g0022901 48.039 102 52 1 91 191 15 116 3.82e-26 105
Msa1351990 MtrunA17_Chr3g0099131 44.545 110 60 1 91 199 43 152 6.08e-26 108
Msa1351990 MtrunA17_Chr4g0022911 48.039 102 52 1 91 191 15 116 1.19e-25 104
Msa1351990 MtrunA17_Chr7g0228531 49.505 101 50 1 91 191 220 319 1.88e-25 106
Msa1351990 MtrunA17_Chr4g0022931 37.500 144 87 2 91 231 15 158 2.90e-25 103
Msa1351990 MtrunA17_Chr2g0323351 47.059 102 51 2 91 190 14 114 3.52e-25 102
Msa1351990 MtrunA17_Chr1g0203411 43.810 105 58 1 91 194 14 118 4.07e-25 103
Msa1351990 MtrunA17_Chr1g0203441 46.602 103 52 2 91 191 15 116 9.36e-25 102
Msa1351990 MtrunA17_Chr4g0055981 33.918 171 103 5 90 256 56 220 1.07e-24 100
Msa1351990 MtrunA17_Chr5g0417821 45.098 102 55 1 91 191 9 110 1.31e-24 101
Msa1351990 MtrunA17_Chr8g0360111 48.000 100 51 1 91 189 27 126 2.18e-24 100
Msa1351990 MtrunA17_Chr8g0354661 40.602 133 76 2 68 199 18 148 2.92e-24 103
Msa1351990 MtrunA17_Chr2g0311221 48.454 97 49 1 91 186 16 112 3.67e-24 101
Msa1351990 MtrunA17_Chr5g0434911 44.118 102 56 1 91 191 23 124 4.27e-24 100
Msa1351990 MtrunA17_Chr6g0470971 42.718 103 56 2 91 191 16 117 8.68e-24 99.4
Msa1351990 MtrunA17_Chr7g0220341 40.496 121 69 1 74 191 10 130 9.08e-24 99.4
Msa1351990 MtrunA17_Chr3g0115821 43.103 116 58 3 83 191 1 115 9.56e-24 100
Msa1351990 MtrunA17_Chr3g0080861 42.727 110 62 1 91 199 39 148 1.16e-23 102
Msa1351990 MtrunA17_Chr2g0322521 45.238 126 62 3 76 199 20 140 1.64e-23 100
Msa1351990 MtrunA17_Chr1g0187761 31.111 225 111 6 91 273 14 236 1.87e-23 97.8
Msa1351990 MtrunA17_Chr4g0048511 46.078 102 54 1 91 191 15 116 2.16e-23 99.8
Msa1351990 MtrunA17_Chr5g0434831 43.137 102 57 1 91 191 9 110 3.14e-23 95.5
Msa1351990 MtrunA17_Chr5g0434841 44.118 102 56 1 91 191 22 123 3.22e-23 98.6
Msa1351990 MtrunA17_Chr1g0167691 43.137 102 57 1 91 191 14 115 3.95e-23 97.1
Msa1351990 MtrunA17_Chr7g0228991 43.137 102 57 1 91 191 31 132 4.25e-23 97.4
Msa1351990 MtrunA17_Chr1g0193801 39.344 122 73 1 85 205 8 129 4.26e-23 99.4
Msa1351990 MtrunA17_Chr7g0274581 45.098 102 55 1 91 191 14 115 5.43e-23 95.5
Msa1351990 MtrunA17_Chr7g0270891 38.525 122 74 1 85 205 8 129 6.69e-23 98.6
Msa1351990 MtrunA17_Chr1g0192411 36.765 136 85 1 91 225 14 149 7.64e-23 99.0
Msa1351990 MtrunA17_Chr5g0434931 42.157 102 58 1 91 191 37 138 1.01e-22 96.7
Msa1351990 MtrunA17_Chr4g0022891 30.942 223 122 7 91 287 14 230 1.02e-22 95.5
Msa1351990 MtrunA17_Chr1g0154031 43.636 110 61 1 91 199 78 187 1.42e-22 98.2
Msa1351990 MtrunA17_Chr4g0058631 35.938 128 81 1 91 217 14 141 1.50e-22 97.4
Msa1351990 MtrunA17_Chr2g0281071 44.118 102 56 1 91 191 15 116 1.67e-22 97.1
Msa1351990 MtrunA17_Chr2g0323411 46.078 102 54 1 91 191 14 115 1.74e-22 96.7
Msa1351990 MtrunA17_Chr3g0117091 39.535 129 73 3 91 215 14 141 1.94e-22 97.1
Msa1351990 MtrunA17_Chr2g0309911 42.718 103 56 2 91 191 13 114 2.50e-22 95.9
Msa1351990 MtrunA17_Chr6g0452271 43.137 102 57 1 91 191 14 115 2.55e-22 96.3
Msa1351990 MtrunA17_Chr1g0193371 38.211 123 73 2 85 205 8 129 2.58e-22 96.7
Msa1351990 MtrunA17_Chr7g0228481 48.958 96 48 1 91 186 220 314 2.90e-22 97.4
Msa1351990 MtrunA17_Chr4g0037141 32.934 167 102 4 83 240 1 166 5.77e-22 94.4
Msa1351990 MtrunA17_Chr1g0211161 38.983 118 69 2 91 206 15 131 6.74e-22 93.2
Msa1351990 MtrunA17_Chr8g0342541 40.517 116 61 3 83 191 1 115 9.07e-22 95.1
Msa1351990 MtrunA17_Chr5g0435101 41.748 103 59 1 90 191 12 114 9.70e-22 92.0
Msa1351990 MtrunA17_Chr5g0397231 42.593 108 56 2 83 184 1 108 1.16e-21 94.7
Msa1351990 MtrunA17_Chr1g0209661 40.000 105 62 1 91 194 29 133 1.38e-21 94.0
Msa1351990 MtrunA17_Chr2g0327821 34.615 156 90 4 91 244 8 153 1.66e-21 92.0
Msa1351990 MtrunA17_Chr4g0032401 42.157 102 58 1 91 191 19 120 1.67e-21 94.0
Msa1351990 MtrunA17_Chr2g0330041 43.119 109 54 3 83 184 1 108 1.74e-21 94.7
Msa1351990 MtrunA17_Chr2g0328771 43.689 103 55 2 91 191 22 123 1.79e-21 93.6
Msa1351990 MtrunA17_Chr5g0400821 41.071 112 59 3 91 195 14 125 1.80e-21 93.6
Msa1351990 MtrunA17_Chr4g0070611 39.130 115 64 2 83 191 1 115 1.87e-21 93.6
Msa1351990 MtrunA17_Chr4g0030881 40.678 118 59 3 87 195 5 120 1.95e-21 92.4
Msa1351990 MtrunA17_Chr1g0180391 37.162 148 80 4 91 230 21 163 1.99e-21 91.7
Msa1351990 MtrunA17_Chr7g0228891 42.718 103 56 2 91 191 14 115 3.00e-21 92.0
Msa1351990 MtrunA17_Chr5g0395281 43.689 103 55 2 91 191 14 115 3.02e-21 92.8
Msa1351990 MtrunA17_Chr4g0070641 39.130 115 64 2 83 191 1 115 3.15e-21 89.7
Msa1351990 MtrunA17_Chr5g0410961 39.130 115 64 2 83 191 1 115 3.26e-21 93.2
Msa1351990 MtrunA17_Chr8g0385321 38.261 115 65 2 83 191 1 115 3.82e-21 92.8
Msa1351990 MtrunA17_Chr7g0261281 42.718 103 56 2 91 191 14 115 4.38e-21 91.7
Msa1351990 MtrunA17_Chr8g0342521 39.655 116 62 3 83 191 1 115 4.57e-21 92.8
Msa1351990 MtrunA17_Chr1g0151941 42.718 103 57 2 91 191 14 116 4.98e-21 91.3
Msa1351990 MtrunA17_Chr7g0217221 40.196 102 60 1 91 191 14 115 5.03e-21 91.7
Msa1351990 MtrunA17_Chr7g0271241 42.718 103 56 2 85 185 8 109 5.33e-21 93.2
Msa1351990 MtrunA17_Chr5g0441131 40.566 106 60 3 91 194 11 115 5.92e-21 89.4
Msa1351990 MtrunA17_Chr1g0177901 49.398 83 42 0 102 184 5 87 6.03e-21 89.7
Msa1351990 MtrunA17_Chr8g0387421 40.566 106 62 1 91 195 14 119 6.75e-21 92.0
Msa1351990 MtrunA17_Chr3g0135311 38.655 119 67 3 91 203 14 132 7.41e-21 92.4
Msa1351990 MtrunA17_Chr4g0028311 43.269 104 55 3 91 191 14 116 8.16e-21 92.0
Msa1351990 MtrunA17_Chr8g0342481 41.026 117 60 4 83 191 1 116 9.13e-21 92.8
Msa1351990 MtrunA17_Chr4g0022881 41.237 97 54 2 91 185 14 109 1.26e-20 89.4
Msa1351990 MtrunA17_Chr1g0167661 41.176 102 59 1 91 191 14 115 1.29e-20 90.1
Msa1351990 MtrunA17_Chr8g0334881 45.714 105 55 2 91 193 12 116 1.37e-20 91.3
Msa1351990 MtrunA17_Chr1g0194301 32.663 199 114 8 91 273 35 229 1.39e-20 90.5
Msa1351990 MtrunA17_Chr7g0275911 36.134 119 70 2 83 195 1 119 1.54e-20 89.7
Msa1351990 MtrunA17_Chr7g0240821 43.000 100 54 2 94 191 6 104 1.63e-20 89.4
Msa1351990 MtrunA17_Chr1g0186061 41.905 105 58 2 91 193 22 125 1.68e-20 89.7
Msa1351990 MtrunA17_Chr8g0346561 36.220 127 73 3 76 198 3 125 1.84e-20 90.5
Msa1351990 MtrunA17_Chr8g0343831 37.500 112 69 1 87 197 6 117 2.19e-20 89.4
Msa1351990 MtrunA17_Chr3g0088461 42.727 110 61 2 83 191 17 125 2.22e-20 90.9
Msa1351990 MtrunA17_Chr4g0039971 41.748 103 57 2 91 191 15 116 2.46e-20 90.9
Msa1351990 MtrunA17_Chr4g0042671 41.026 117 64 2 76 191 3 115 2.54e-20 91.7
Msa1351990 MtrunA17_Chr3g0131121 31.818 176 92 6 83 250 1 156 2.69e-20 90.1
Msa1351990 MtrunA17_Chr3g0121241 37.069 116 72 1 91 205 44 159 2.70e-20 90.1
Msa1351990 MtrunA17_Chr4g0054391 44.330 97 52 2 91 185 14 110 2.71e-20 89.7
Msa1351990 MtrunA17_Chr7g0228231 26.882 186 122 2 91 275 16 188 2.99e-20 87.8
Msa1351990 MtrunA17_Chr7g0233061 41.379 116 57 3 71 186 169 273 3.00e-20 90.9
Msa1351990 MtrunA17_Chr1g0152011 37.815 119 67 3 91 202 14 132 3.89e-20 90.1
Msa1351990 MtrunA17_Chr6g0453211 41.237 97 56 1 91 186 14 110 4.20e-20 89.7
Msa1351990 MtrunA17_Chr2g0327351 44.898 98 52 2 91 186 14 111 4.27e-20 89.7
Msa1351990 MtrunA17_Chr6g0453471 38.000 150 82 3 76 224 3 142 4.32e-20 90.5
Msa1351990 MtrunA17_Chr7g0264641 39.655 116 63 3 83 191 1 116 4.42e-20 89.0
Msa1351990 MtrunA17_Chr5g0440781 42.857 98 54 2 91 186 14 111 4.72e-20 87.0
Msa1351990 MtrunA17_Chr4g0044421 42.268 97 53 2 90 184 13 108 5.26e-20 87.0
Msa1351990 MtrunA17_Chr5g0440761 41.905 105 56 3 91 193 14 115 6.49e-20 88.2
Msa1351990 MtrunA17_Chr7g0254411 40.541 111 61 2 82 191 9 115 7.84e-20 89.4
Msa1351990 MtrunA17_Chr5g0441141 42.857 98 54 2 91 186 14 111 8.72e-20 88.2
Msa1351990 MtrunA17_Chr4g0013361 44.643 112 57 3 84 193 8 116 1.51e-19 87.8
Msa1351990 MtrunA17_Chr4g0060721 39.216 102 61 1 91 191 15 116 1.72e-19 88.2
Msa1351990 MtrunA17_Chr7g0217741 40.678 118 63 3 76 191 3 115 1.88e-19 87.8
Msa1351990 MtrunA17_Chr1g0194951 37.288 118 67 3 76 191 3 115 1.95e-19 88.6
Msa1351990 MtrunA17_Chr3g0092401 39.216 102 61 1 91 191 15 116 1.97e-19 87.8
Msa1351990 MtrunA17_Chr1g0168661 43.000 100 54 2 87 184 19 117 4.46e-19 85.9
Msa1351990 MtrunA17_Chr7g0238651 38.393 112 66 1 86 194 2 113 1.14e-18 86.3
Msa1351990 MtrunA17_Chr4g0072751 42.857 98 54 2 91 186 14 111 1.18e-18 86.3
Msa1351990 MtrunA17_Chr5g0434571 32.335 167 98 4 82 238 45 206 1.39e-18 85.9
Msa1351990 MtrunA17_Chr4g0068921 42.268 97 55 1 91 186 26 122 3.23e-18 82.0
Msa1351990 MtrunA17_Chr5g0434901 53.226 62 29 0 124 185 9 70 3.90e-18 79.3
Msa1351990 MtrunA17_Chr3g0110351 41.071 112 59 3 82 191 9 115 4.16e-18 84.0
Msa1351990 MtrunA17_Chr1g0194291 37.273 110 67 2 91 198 23 132 5.67e-18 82.8
Msa1351990 MtrunA17_Chr2g0293911 39.091 110 65 2 91 198 26 135 5.83e-18 84.0
Msa1351990 MtrunA17_Chr4g0068061 37.255 102 63 1 91 191 14 115 7.32e-18 83.6
Msa1351990 MtrunA17_Chr4g0057031 39.806 103 59 2 91 191 14 115 9.12e-18 82.4
Msa1351990 MtrunA17_Chr6g0450101 41.053 95 55 1 91 184 16 110 1.41e-17 80.5
Msa1351990 MtrunA17_Chr7g0247131 43.373 83 47 0 124 206 14 96 1.58e-17 81.6
Msa1351990 MtrunA17_Chr8g0349261 41.346 104 57 3 91 191 15 117 1.60e-17 82.0
Msa1351990 MtrunA17_Chr5g0416341 31.250 144 77 2 94 228 29 159 2.79e-17 82.8
Msa1351990 MtrunA17_Chr7g0229101 30.625 160 84 3 124 256 8 167 3.79e-17 79.3
Msa1351990 MtrunA17_Chr8g0362231 35.714 98 63 0 94 191 25 122 6.66e-17 81.6
Msa1351990 MtrunA17_Chr3g0099141 43.902 82 45 1 91 171 42 123 4.75e-16 74.3
Msa1351990 MtrunA17_Chr7g0229131 33.065 124 77 2 120 237 2 125 1.08e-15 74.3
Msa1351990 MtrunA17_Chr6g0487491 38.393 112 59 3 91 192 14 125 1.38e-15 75.9
Msa1351990 MtrunA17_Chr5g0425591 45.122 82 41 3 91 169 11 91 2.04e-15 71.2
Msa1351990 MtrunA17_Chr3g0093811 46.377 69 35 2 124 191 18 85 2.26e-14 72.4
Msa1351990 MtrunA17_Chr7g0269831 38.739 111 63 2 82 191 9 115 3.45e-14 73.2
Msa1351990 MtrunA17_Chr6g0483051 37.363 91 56 1 94 184 72 161 4.80e-14 73.6
Msa1351990 MtrunA17_Chr2g0323321 41.250 80 44 2 91 168 13 91 9.84e-14 67.0
Msa1351990 MtrunA17_Chr4g0042611 41.333 75 43 1 91 164 14 88 3.39e-13 64.7
Msa1351990 MtrunA17_Chr5g0395221 42.667 75 42 1 91 164 14 88 1.31e-12 63.2
Msa1351990 MtrunA17_Chr8g0342511 38.636 88 46 3 83 163 1 87 2.34e-12 62.8
Msa1351990 MtrunA17_Chr8g0342531 40.260 77 43 2 91 165 14 89 6.92e-12 63.2
Msa1351990 MtrunA17_Chr7g0274481 40.000 85 50 1 92 176 8 91 9.40e-12 66.6
Msa1351990 MtrunA17_Chr3g0104491 50.000 52 26 0 141 192 17 68 1.64e-11 64.3
Msa1351990 MtrunA17_Chr5g0421201 50.000 50 25 0 143 192 12 61 2.07e-11 62.4
Msa1351990 MtrunA17_Chr6g0453751 41.573 89 42 4 91 169 22 110 2.32e-11 60.8
Msa1351990 MtrunA17_Chr7g0233151 46.154 52 28 0 141 192 1 52 2.70e-11 61.6
Msa1351990 MtrunA17_Chr8g0342461 41.026 78 42 3 91 165 14 90 3.05e-11 60.8
Msa1351990 MtrunA17_Chr3g0104501 54.902 51 23 0 91 141 133 183 4.84e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1351990 AT5G17800.1 43.158 285 104 6 86 362 88 322 6.77e-71 224
Msa1351990 AT1G69560.1 46.739 276 94 9 90 363 106 330 2.10e-69 221
Msa1351990 AT1G69560.2 46.739 276 94 9 90 363 122 346 2.50e-69 221
Msa1351990 AT1G26780.1 77.586 116 26 0 88 203 95 210 3.02e-66 211
Msa1351990 AT1G26780.2 77.586 116 26 0 88 203 95 210 9.85e-66 212
Msa1351990 AT1G17950.1 75.926 108 26 0 88 195 2 109 6.72e-61 196
Msa1351990 AT3G29020.1 71.795 117 33 0 86 202 60 176 1.08e-60 195
Msa1351990 AT3G29020.2 71.795 117 33 0 86 202 62 178 5.93e-60 196
Msa1351990 AT4G33450.1 76.415 106 25 0 89 194 17 122 2.85e-58 189
Msa1351990 AT1G73410.1 43.636 275 116 8 88 361 3 239 4.95e-58 189
Msa1351990 AT1G73410.2 79.439 107 22 0 88 194 3 109 5.55e-57 184
Msa1351990 AT5G39700.1 64.423 104 37 0 92 195 57 160 4.16e-43 148
Msa1351990 AT5G67300.1 43.713 167 80 4 91 250 6 165 6.37e-38 138
Msa1351990 AT4G37260.1 41.875 160 78 3 91 248 13 159 2.46e-37 137
Msa1351990 AT3G55730.1 54.808 104 47 0 91 194 56 159 2.61e-36 136
Msa1351990 AT2G39880.1 53.043 115 52 1 84 198 45 157 5.14e-36 134
Msa1351990 AT2G23290.1 53.465 101 47 0 91 191 13 113 3.24e-35 131
Msa1351990 AT3G50060.1 53.465 101 47 0 91 191 6 106 7.75e-35 130
Msa1351990 AT3G09230.1 54.455 101 46 0 91 191 55 155 1.80e-34 131
Msa1351990 AT3G09370.1 52.475 101 48 0 91 191 130 230 1.45e-31 125
Msa1351990 AT3G09370.2 52.475 101 48 0 91 191 135 235 1.46e-31 125
Msa1351990 AT3G09370.3 52.475 101 48 0 91 191 143 243 2.17e-31 124
Msa1351990 AT5G02320.1 52.475 101 48 0 91 191 127 227 3.44e-31 124
Msa1351990 AT5G02320.2 52.475 101 48 0 91 191 127 227 3.44e-31 124
Msa1351990 AT5G02320.3 52.475 101 48 0 91 191 67 167 4.49e-31 123
Msa1351990 AT4G32730.5 41.481 135 74 2 61 191 54 187 2.10e-30 123
Msa1351990 AT4G32730.4 41.481 135 74 2 61 191 54 187 2.10e-30 123
Msa1351990 AT4G32730.3 41.481 135 74 2 61 191 54 187 2.10e-30 123
Msa1351990 AT4G32730.2 41.481 135 74 2 61 191 54 187 2.10e-30 123
Msa1351990 AT4G32730.1 41.481 135 74 2 61 191 54 187 2.25e-30 122
Msa1351990 AT5G11510.3 40.000 135 76 2 61 191 48 181 9.12e-30 121
Msa1351990 AT5G11510.1 40.000 135 76 2 61 191 48 181 9.12e-30 121
Msa1351990 AT5G11510.4 40.000 135 76 2 61 191 48 181 9.12e-30 121
Msa1351990 AT5G11050.1 35.644 202 93 5 91 290 105 271 1.01e-29 119
Msa1351990 AT5G11510.2 40.000 135 76 2 61 191 48 181 1.02e-29 120
Msa1351990 AT5G11510.5 40.000 135 76 2 61 191 48 181 1.09e-29 120
Msa1351990 AT5G58850.1 50.000 112 56 0 80 191 94 205 1.11e-29 119
Msa1351990 AT5G40360.1 40.000 150 87 2 46 192 110 259 4.76e-29 115
Msa1351990 AT3G27785.1 50.000 102 51 0 91 192 189 290 1.90e-27 112
Msa1351990 AT2G25230.1 49.495 99 48 2 93 190 28 125 4.24e-27 107
Msa1351990 AT4G18770.1 42.857 126 72 0 91 216 217 342 5.05e-27 111
Msa1351990 AT3G11440.2 42.735 117 66 1 84 199 36 152 2.31e-26 110
Msa1351990 AT3G11440.3 42.735 117 66 1 84 199 36 152 3.03e-26 110
Msa1351990 AT3G11440.4 42.735 117 66 1 84 199 36 152 3.03e-26 110
Msa1351990 AT3G11440.1 42.735 117 66 1 84 199 36 152 3.03e-26 110
Msa1351990 AT3G48920.1 41.463 123 69 2 91 210 20 142 7.91e-26 104
Msa1351990 AT1G79180.1 46.602 103 52 2 91 191 16 117 4.70e-25 103
Msa1351990 AT2G32460.1 45.045 111 58 2 91 199 20 129 6.23e-25 105
Msa1351990 AT2G32460.2 45.045 111 58 2 91 199 8 117 6.85e-25 105
Msa1351990 AT5G40430.1 30.396 227 138 6 46 262 4 220 6.87e-25 102
Msa1351990 AT4G28110.1 43.478 115 59 2 83 191 1 115 8.11e-25 102
Msa1351990 AT5G40330.1 43.137 102 57 1 91 191 14 115 9.34e-25 100
Msa1351990 AT5G06100.1 43.636 110 61 1 91 199 34 143 1.30e-24 104
Msa1351990 AT2G26950.1 34.524 168 96 4 83 243 10 170 1.56e-24 103
Msa1351990 AT4G25560.1 43.363 113 61 2 81 191 2 113 1.59e-24 102
Msa1351990 AT5G06100.5 43.636 110 61 1 91 199 34 143 1.70e-24 105
Msa1351990 AT5G06100.2 43.636 110 61 1 91 199 34 143 1.70e-24 105
Msa1351990 AT5G06100.3 43.636 110 61 1 91 199 34 143 1.70e-24 105
Msa1351990 AT5G06100.4 43.636 110 61 1 91 199 34 143 1.70e-24 105
Msa1351990 AT4G26930.1 43.636 110 61 1 91 199 21 130 1.71e-24 103
Msa1351990 AT3G27920.1 44.118 102 56 1 91 191 16 117 1.81e-24 100
Msa1351990 AT5G14750.1 43.137 102 57 1 91 191 18 119 1.96e-24 99.8
Msa1351990 AT3G23250.1 34.637 179 109 3 91 268 14 185 2.00e-24 101
Msa1351990 AT1G63910.1 39.695 131 73 2 83 207 1 131 4.11e-24 102
Msa1351990 AT3G12720.1 45.631 103 53 2 91 191 24 125 4.12e-24 101
Msa1351990 AT1G18570.1 44.118 102 56 1 91 191 15 116 5.44e-24 101
Msa1351990 AT5G56110.1 46.078 102 54 1 91 191 14 115 9.13e-24 100
Msa1351990 AT5G61420.2 39.007 141 84 2 91 229 14 154 2.43e-23 100
Msa1351990 AT1G74080.1 35.802 162 97 3 91 250 14 170 2.52e-23 99.4
Msa1351990 AT3G28470.1 49.474 95 47 1 91 184 14 108 2.85e-23 99.0
Msa1351990 AT1G56160.1 44.660 103 54 2 91 191 16 117 3.12e-23 98.6
Msa1351990 AT2G31180.1 44.118 102 56 1 91 191 14 115 3.47e-23 97.4
Msa1351990 AT4G05100.1 42.241 116 60 2 83 191 1 116 4.30e-23 98.6
Msa1351990 AT5G07700.1 37.736 159 91 3 91 242 14 171 5.79e-23 98.6
Msa1351990 AT5G07700.2 37.736 159 91 3 91 242 14 171 5.79e-23 98.6
Msa1351990 AT5G54230.1 43.137 102 57 1 91 191 14 115 6.55e-23 98.2
Msa1351990 AT5G65230.1 45.631 103 53 2 91 191 14 115 6.69e-23 97.8
Msa1351990 AT1G09540.1 38.462 143 84 3 85 224 8 149 7.22e-23 98.6
Msa1351990 AT2G26960.1 43.243 111 62 1 90 199 21 131 1.06e-22 99.0
Msa1351990 AT5G60890.1 39.655 116 69 1 91 205 14 129 1.21e-22 97.1
Msa1351990 AT3G12820.1 44.660 103 54 2 91 191 16 117 1.30e-22 95.5
Msa1351990 AT5G62470.1 41.584 101 59 0 91 191 14 114 1.34e-22 97.8
Msa1351990 AT3G13890.2 33.158 190 117 5 83 262 1 190 1.35e-22 97.8
Msa1351990 AT5G10280.1 44.660 103 54 2 91 191 14 115 1.36e-22 97.4
Msa1351990 AT4G00540.2 46.154 104 53 1 91 191 103 206 1.63e-22 98.2
Msa1351990 AT1G74430.1 37.600 125 77 1 91 214 14 138 1.71e-22 95.9
Msa1351990 AT5G52600.1 44.118 102 56 1 91 191 14 115 1.80e-22 94.4
Msa1351990 AT1G16490.1 44.660 103 54 2 91 191 16 117 1.88e-22 95.9
Msa1351990 AT3G30210.1 37.500 128 79 1 89 215 27 154 2.40e-22 95.9
Msa1351990 AT4G00540.1 46.154 104 53 1 91 191 101 204 3.30e-22 97.8
Msa1351990 AT4G17785.2 42.735 117 58 3 83 191 1 116 3.49e-22 96.7
Msa1351990 AT4G17785.1 42.735 117 58 3 83 191 1 116 3.87e-22 96.7
Msa1351990 AT5G52260.1 48.544 103 50 2 91 191 14 115 4.10e-22 94.7
Msa1351990 AT5G55020.1 41.818 110 63 1 91 199 28 137 5.13e-22 97.8
Msa1351990 AT1G57560.2 34.302 172 108 3 85 252 8 178 6.99e-22 94.4
Msa1351990 AT5G26660.1 34.615 156 95 3 91 240 14 168 7.68e-22 95.5
Msa1351990 AT1G22640.1 30.870 230 124 7 83 278 1 229 8.07e-22 94.0
Msa1351990 AT3G47600.1 42.157 102 58 1 91 191 14 115 8.10e-22 95.1
Msa1351990 AT4G38620.1 35.252 139 84 2 83 215 1 139 8.70e-22 94.4
Msa1351990 AT3G13890.1 31.156 199 118 5 83 262 1 199 9.39e-22 95.5
Msa1351990 AT1G35515.1 36.522 115 67 2 83 191 1 115 1.59e-21 92.0
Msa1351990 AT5G07690.1 39.516 124 69 2 91 213 14 132 1.64e-21 94.4
Msa1351990 AT5G57620.1 43.689 103 56 2 91 191 14 116 1.71e-21 94.4
Msa1351990 AT3G53200.1 42.056 107 59 2 91 195 11 116 2.04e-21 92.4
Msa1351990 AT4G01680.3 39.091 110 66 1 85 193 8 117 2.05e-21 92.4
Msa1351990 AT3G02940.2 39.130 115 64 2 83 191 1 115 2.13e-21 93.6
Msa1351990 AT4G21440.1 43.137 102 57 1 91 191 14 115 2.49e-21 94.4
Msa1351990 AT1G79180.2 37.037 135 51 2 91 191 16 150 2.78e-21 93.6
Msa1351990 AT5G23000.1 43.269 104 55 2 91 191 14 116 2.86e-21 93.6
Msa1351990 AT5G16770.4 39.130 115 64 2 83 191 1 115 2.96e-21 93.6
Msa1351990 AT5G16770.3 39.130 115 64 2 83 191 1 115 2.96e-21 93.6
Msa1351990 AT3G02940.1 39.130 115 64 2 83 191 1 115 3.18e-21 93.6
Msa1351990 AT3G02940.3 39.130 115 64 2 83 191 1 115 3.18e-21 93.6
Msa1351990 AT5G35550.1 40.777 103 60 1 90 191 15 117 3.33e-21 92.0
Msa1351990 AT1G34670.1 40.000 115 63 2 83 191 1 115 3.47e-21 94.0
Msa1351990 AT5G16770.1 39.130 115 64 2 83 191 1 115 3.77e-21 93.6
Msa1351990 AT5G16770.2 39.130 115 64 2 83 191 1 115 3.77e-21 93.6
Msa1351990 AT5G62470.2 41.176 102 59 1 91 191 14 115 4.02e-21 93.6
Msa1351990 AT4G01680.1 39.091 110 66 1 85 193 8 117 5.40e-21 93.2
Msa1351990 AT4G09460.1 31.609 174 103 3 83 240 1 174 5.49e-21 90.9
Msa1351990 AT1G06180.1 41.026 117 61 4 82 195 9 120 5.62e-21 91.3
Msa1351990 AT1G66370.1 37.963 108 66 1 91 197 10 117 6.86e-21 90.9
Msa1351990 AT5G15310.1 37.415 147 83 3 83 223 1 144 7.03e-21 92.4
Msa1351990 AT5G15310.2 37.415 147 83 3 83 223 1 144 8.21e-21 92.0
Msa1351990 AT3G49690.1 43.689 103 56 2 91 191 14 116 1.16e-20 91.7
Msa1351990 AT3G01140.2 39.130 115 64 2 83 191 1 115 1.25e-20 92.0
Msa1351990 AT5G12870.1 37.391 115 71 1 78 191 7 121 1.27e-20 90.9
Msa1351990 AT3G46130.1 41.121 107 60 2 91 195 11 116 1.42e-20 90.5
Msa1351990 AT1G57560.1 35.172 145 89 3 85 227 8 149 1.58e-20 91.3
Msa1351990 AT5G59780.3 40.187 107 61 2 91 195 10 115 1.60e-20 89.7
Msa1351990 AT5G14340.1 40.000 105 60 2 91 193 26 129 1.96e-20 90.5
Msa1351990 AT5G14750.3 48.529 68 35 0 124 191 18 85 1.99e-20 87.8
Msa1351990 AT3G01140.1 41.176 102 59 1 91 191 57 158 2.13e-20 92.0
Msa1351990 AT3G60460.1 45.714 105 55 2 91 193 13 117 2.57e-20 90.5
Msa1351990 AT1G18710.1 40.196 102 60 1 91 191 14 115 2.57e-20 89.7
Msa1351990 AT5G15310.4 39.130 115 64 2 83 191 1 115 2.63e-20 89.4
Msa1351990 AT5G65790.1 34.752 141 86 3 91 225 14 154 3.78e-20 91.3
Msa1351990 AT2G47190.1 40.000 110 64 2 91 198 22 131 4.10e-20 89.4
Msa1351990 AT3G08500.1 42.157 102 58 1 91 191 32 133 4.66e-20 90.5
Msa1351990 AT1G25340.2 38.462 104 60 1 91 194 20 119 6.72e-20 89.0
Msa1351990 AT1G66380.1 37.600 125 77 1 84 207 3 127 6.87e-20 85.5
Msa1351990 AT1G25340.3 38.462 104 60 1 91 194 20 119 8.19e-20 89.4
Msa1351990 AT4G01680.2 37.705 122 63 2 85 193 8 129 8.38e-20 89.7
Msa1351990 AT1G25340.1 38.095 105 64 1 91 194 20 124 9.86e-20 88.6
Msa1351990 AT3G28910.1 40.196 102 60 1 91 191 14 115 1.03e-19 89.4
Msa1351990 AT2G16720.1 37.069 116 65 3 83 191 1 115 1.03e-19 88.2
Msa1351990 AT3G61250.1 37.594 133 76 3 82 212 9 136 1.18e-19 88.6
Msa1351990 AT4G34990.1 37.391 115 66 2 83 191 1 115 1.23e-19 88.2
Msa1351990 AT3G13540.1 30.247 162 103 2 91 242 25 186 1.35e-19 87.4
Msa1351990 AT1G56650.1 31.176 170 109 3 84 252 3 165 1.51e-19 87.4
Msa1351990 AT1G68320.1 39.623 106 61 2 91 194 21 125 1.72e-19 87.8
Msa1351990 AT1G66230.1 33.939 165 100 5 82 242 9 168 2.03e-19 87.8
Msa1351990 AT5G16600.1 37.594 133 76 3 82 212 9 136 2.19e-19 88.2
Msa1351990 AT5G49620.1 36.232 138 82 3 63 198 4 137 3.01e-19 87.4
Msa1351990 AT1G74650.1 38.235 102 62 1 91 191 14 115 3.89e-19 87.8
Msa1351990 AT2G02820.1 33.884 121 80 0 94 214 33 153 5.38e-19 88.6
Msa1351990 AT2G02820.3 33.884 121 80 0 94 214 33 153 5.87e-19 87.0
Msa1351990 AT2G02820.2 33.884 121 80 0 94 214 33 153 6.19e-19 88.6
Msa1351990 AT1G08810.1 34.014 147 94 2 91 234 14 160 7.91e-19 85.9
Msa1351990 AT3G12820.2 51.471 68 33 0 124 191 2 69 8.57e-19 84.0
Msa1351990 AT2G36890.1 42.308 104 56 3 91 191 14 116 9.27e-19 85.9
Msa1351990 AT4G13480.1 40.187 107 61 2 87 191 4 109 9.96e-19 85.1
Msa1351990 AT2G36890.2 42.308 104 56 3 91 191 55 157 1.00e-18 86.7
Msa1351990 AT3G24310.1 41.748 103 57 2 91 191 20 121 1.03e-18 85.5
Msa1351990 AT3G53200.2 48.611 72 37 0 124 195 12 83 1.41e-18 83.6
Msa1351990 AT1G48000.1 43.158 95 53 1 91 184 34 128 1.68e-18 84.3
Msa1351990 AT5G35550.2 46.154 78 40 1 116 191 43 120 2.21e-18 84.3
Msa1351990 AT5G40350.1 41.053 95 55 1 91 184 19 113 3.29e-18 82.8
Msa1351990 AT4G12350.1 38.679 106 62 2 88 191 11 115 3.62e-18 84.3
Msa1351990 AT3G27810.1 41.053 95 55 1 91 184 22 116 6.08e-18 82.4
Msa1351990 AT3G01530.1 40.196 102 58 2 91 190 27 127 1.02e-17 81.3
Msa1351990 AT4G22680.1 40.777 103 58 2 91 191 14 115 1.15e-17 82.4
Msa1351990 AT2G47460.1 35.556 135 77 3 91 224 14 139 1.26e-17 83.6
Msa1351990 AT5G26660.2 35.537 121 74 1 124 240 17 137 1.43e-17 82.8
Msa1351990 AT1G14350.2 34.951 103 67 0 94 196 28 130 1.44e-17 84.0
Msa1351990 AT1G14350.1 34.951 103 67 0 94 196 28 130 1.44e-17 84.0
Msa1351990 AT3G06490.1 39.091 110 65 2 91 198 21 130 1.45e-17 83.2
Msa1351990 AT4G37780.1 37.864 103 62 2 91 191 14 116 2.12e-17 82.4
Msa1351990 AT5G49330.1 37.864 103 61 2 91 191 14 115 3.69e-17 82.0
Msa1351990 AT5G59780.2 45.833 72 39 0 124 195 23 94 4.00e-17 79.7
Msa1351990 AT2G37630.1 33.571 140 83 2 91 220 4 143 5.82e-17 81.6
Msa1351990 AT3G46130.3 43.210 81 44 1 117 195 4 84 6.45e-17 79.3
Msa1351990 AT1G66390.1 40.000 110 65 1 84 192 3 112 6.57e-17 79.7
Msa1351990 AT3G46130.4 45.833 72 39 0 124 195 23 94 8.06e-17 79.3
Msa1351990 AT3G62610.1 35.043 117 71 2 76 191 3 115 1.62e-16 80.1
Msa1351990 AT3G18100.1 38.298 94 58 0 91 184 546 639 2.81e-16 80.9
Msa1351990 AT3G18100.1 33.684 95 61 2 91 184 495 588 7.25e-11 64.3
Msa1351990 AT3G18100.3 38.298 94 58 0 91 184 498 591 3.25e-16 80.9
Msa1351990 AT3G18100.3 33.684 95 61 2 91 184 447 540 8.71e-11 63.9
Msa1351990 AT3G18100.4 38.298 94 58 0 91 184 385 478 4.54e-16 80.1
Msa1351990 AT3G18100.2 38.298 94 58 0 91 184 333 426 5.24e-16 79.7
Msa1351990 AT5G49620.2 32.895 152 82 4 63 198 4 151 7.46e-16 78.2
Msa1351990 AT5G40350.2 47.541 61 32 0 124 184 8 68 1.36e-15 74.3
Msa1351990 AT3G27810.2 47.541 61 32 0 124 184 7 67 2.88e-15 73.6
Msa1351990 AT1G66380.3 42.857 84 48 0 124 207 11 94 3.25e-15 71.2
Msa1351990 AT5G62320.1 38.182 110 58 3 91 191 15 123 3.99e-15 74.7
Msa1351990 AT3G47600.2 45.588 68 37 0 124 191 42 109 8.72e-15 75.1
Msa1351990 AT1G71030.2 41.538 65 38 0 127 191 5 69 1.29e-13 68.9
Msa1351990 AT1G71030.1 41.538 65 38 0 127 191 19 83 1.74e-13 68.9
Msa1351990 AT5G14750.4 41.379 58 34 0 134 191 1 58 6.07e-13 66.2
Msa1351990 AT5G14750.2 41.379 58 34 0 134 191 1 58 6.07e-13 66.2
Msa1351990 AT3G23250.2 31.852 135 85 2 134 268 1 128 2.68e-12 66.2
Msa1351990 AT1G22640.3 29.070 172 95 4 134 278 1 172 3.71e-12 65.1
Msa1351990 AT1G09770.1 40.000 85 50 1 92 176 8 91 2.17e-11 65.9

Find 89 sgRNAs with CRISPR-Local

Find 280 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTACAGTTTGTTCCATAAA+AGG 0.190696 tig0012398:-1449 Msa1351990:three_prime_UTR
CTGAATATGGTCCTCAAAAT+TGG 0.247103 tig0012398:-2927 Msa1351990:CDS
AGGTCCAATATCTCAATTTC+TGG 0.252170 tig0012398:-1658 Msa1351990:CDS
TTCACCAGAAATTGAGATAT+TGG 0.257304 tig0012398:+1654 None:intergenic
ATTGTATAAACTCCTGGTTT+TGG 0.307076 tig0012398:-1297 Msa1351990:three_prime_UTR
AAGGAGCTTGTTGCTGAATA+TGG 0.317262 tig0012398:-2940 Msa1351990:CDS
CTCTTCTTCTTCCTCAGAAA+AGG 0.328360 tig0012398:+2508 None:intergenic
TTGTTATGCTGTGGTACTTT+TGG 0.354798 tig0012398:-1238 Msa1351990:three_prime_UTR
TTAAGTTTAGCATCTTCTAT+TGG 0.361231 tig0012398:+2961 None:intergenic
GAAAGACTTTCAACAACAAC+AGG 0.361584 tig0012398:+2332 None:intergenic
ACTATCTCAAGCACCATTGA+TGG 0.370339 tig0012398:-2263 Msa1351990:CDS
TCAAGGCTATGGATCACTAA+TGG 0.371833 tig0012398:-2147 Msa1351990:CDS
AGGAGCTATACAAAGCTAAA+TGG 0.376612 tig0012398:-1572 Msa1351990:exon
AAAGCACCCATCTTCTACTT+TGG 0.377594 tig0012398:+3095 None:intergenic
AGGAGTGAGTGAGAGATTAG+TGG 0.388076 tig0012398:+2226 None:intergenic
AATTGAGATATTGGACCTAT+TGG 0.389765 tig0012398:+1663 None:intergenic
ATAAAATGTATGGTAACAAA+TGG 0.396082 tig0012398:-2469 Msa1351990:CDS
TTAGCTGCTCATAAAATGTA+TGG 0.406757 tig0012398:-2479 Msa1351990:CDS
ACAAGATAAGTTGAAGGAAT+AGG 0.408227 tig0012398:+3189 None:intergenic
TCCTTTGACAAACCCTGAAA+AGG 0.411626 tig0012398:-3151 Msa1351990:CDS
AGCTTTGTTCTAGAGGTCAT+TGG 0.416349 tig0012398:-2987 Msa1351990:CDS
GTTTGTCAAAGGAAGAGCTT+TGG 0.416396 tig0012398:+3161 None:intergenic
AATAGAAGATGCTAAACTTA+AGG 0.419512 tig0012398:-2959 Msa1351990:CDS
AGCTCTGTTTCTGTGAAAGT+TGG 0.422370 tig0012398:-3018 Msa1351990:CDS
TATTCCTTCAACTTATCTTG+TGG 0.429455 tig0012398:-3187 Msa1351990:CDS
AACAGTGTACTGTGTATAGA+AGG 0.441649 tig0012398:-2361 Msa1351990:CDS
CCATCCAAGTCATAAAACTT+TGG 0.446284 tig0012398:+1197 None:intergenic
CAAGGCTATGGATCACTAAT+GGG 0.446395 tig0012398:-2146 Msa1351990:intron
TTGATTGCAGAACATCTTGA+AGG 0.454431 tig0012398:-2901 Msa1351990:CDS
CAAAGCTAAATGGTTGATAC+AGG 0.458360 tig0012398:-1562 Msa1351990:exon
TTTAAGTCCAAAGTAGAAGA+TGG 0.458745 tig0012398:-3102 Msa1351990:CDS
GTTGAAGGAATAGGAGCTAA+AGG 0.461111 tig0012398:+3198 None:intergenic
AGTTGAGACATTTCCATCAA+TGG 0.463655 tig0012398:+2250 None:intergenic
ACTTTGGACTTAAACATTGA+GGG 0.468793 tig0012398:+3111 None:intergenic
TTCTCATATAGCAGAATACT+AGG 0.469714 tig0012398:-1269 Msa1351990:three_prime_UTR
ATAATAATTGTATAAACTCC+TGG 0.469951 tig0012398:-1303 Msa1351990:three_prime_UTR
ATAATGCAGTGAAGAATCAT+TGG 0.470220 tig0012398:-2412 Msa1351990:CDS
GAGAAAGTGTGGTGGCAACT+AGG 0.473551 tig0012398:-1825 Msa1351990:CDS
AGAAAGTGTGGTGGCAACTA+GGG 0.475189 tig0012398:-1824 Msa1351990:CDS
GAACATCTTGAAGGAAGATC+AGG 0.475989 tig0012398:-2892 Msa1351990:intron
ATACAGGAAGATCATGGGTT+AGG 0.478477 tig0012398:-1546 Msa1351990:three_prime_UTR
GATGGGTGCTTTGAGGTTCA+AGG 0.478786 tig0012398:-3084 Msa1351990:CDS
TACTTTGGACTTAAACATTG+AGG 0.483288 tig0012398:+3110 None:intergenic
CATTACCAAGTTTCAAAGAC+AGG 0.490809 tig0012398:+3055 None:intergenic
CCTTTGACAAACCCTGAAAA+GGG 0.491757 tig0012398:-3150 Msa1351990:CDS
CTGAGTCAGTTACCACCAAT+AGG 0.493276 tig0012398:-1678 Msa1351990:CDS
TACTCCAAGCTTTGTTCTAG+AGG 0.507196 tig0012398:-2994 Msa1351990:CDS
TAAAATGTATGGTAACAAAT+GGG 0.508678 tig0012398:-2468 Msa1351990:CDS
GTCGAGAGTCATCAAGGCTA+TGG 0.512571 tig0012398:-2158 Msa1351990:CDS
ACTCCAAGAAAATCAATGAA+TGG 0.522689 tig0012398:+1595 None:intergenic
TGAGATATTGGACCTATTGG+TGG 0.526375 tig0012398:+1666 None:intergenic
GAATCCACAAGATAAGTTGA+AGG 0.528997 tig0012398:+3183 None:intergenic
GCAAGGGAACCGTTTGTGTT+GGG 0.529275 tig0012398:-1504 Msa1351990:three_prime_UTR
AGTAGAAGATGGGTGCTTTG+AGG 0.530721 tig0012398:-3091 Msa1351990:CDS
TGAGGACTTAGTTTAGCTGA+AGG 0.532322 tig0012398:+2206 None:intergenic
GAATCATTGGCATGTGATCA+TGG 0.539113 tig0012398:-2399 Msa1351990:CDS
TGTTGTTGAAAGTCTTTCAA+AGG 0.540837 tig0012398:-2327 Msa1351990:CDS
TCTCATATAGCAGAATACTA+GGG 0.547555 tig0012398:-1268 Msa1351990:three_prime_UTR
TGCAAGGGAACCGTTTGTGT+TGG 0.549674 tig0012398:-1505 Msa1351990:three_prime_UTR
TGGTTGATACAGGAAGATCA+TGG 0.550140 tig0012398:-1552 Msa1351990:three_prime_UTR
TGATCATGGCTAGAAGACAT+AGG 0.551949 tig0012398:-2385 Msa1351990:CDS
ATGACCTCTAGAACAAAGCT+TGG 0.553743 tig0012398:+2990 None:intergenic
TAGCCTTGATGACTCTCGAC+TGG 0.560007 tig0012398:+2161 None:intergenic
GATCATGGGTTAGGAAAGTG+AGG 0.563056 tig0012398:-1537 Msa1351990:three_prime_UTR
ACTGCATTATCTGTCCTCCC+TGG 0.564600 tig0012398:+2425 None:intergenic
GATCATGGCTAGAAGACATA+GGG 0.580957 tig0012398:-2384 Msa1351990:CDS
GGGCCTTGTTTGTTATGCTG+TGG 0.583138 tig0012398:-1247 Msa1351990:three_prime_UTR
AAAGCTAATAGATGTGGTGG+TGG 0.583743 tig0012398:-1743 Msa1351990:CDS
GTTCCAGTCGAGAGTCATCA+AGG 0.591505 tig0012398:-2164 Msa1351990:CDS
TCTGGTGAAAGTGAAAATGT+TGG 0.594833 tig0012398:-1640 Msa1351990:CDS
TTAAGTCCAAAGTAGAAGAT+GGG 0.595363 tig0012398:-3101 Msa1351990:CDS
AGCTTGTAAGAAGAATGAAC+AGG 0.595462 tig0012398:-1776 Msa1351990:CDS
GCTAAAGCTAATAGATGTGG+TGG 0.598165 tig0012398:-1746 Msa1351990:CDS
TATGAAAGTGATGATGACTT+AGG 0.598889 tig0012398:-1350 Msa1351990:three_prime_UTR
TATGGAACAAACTGTACACA+AGG 0.603512 tig0012398:+1454 None:intergenic
ACTAGTTTATCAAACAGTTG+AGG 0.605771 tig0012398:+2188 None:intergenic
AAAGCTAAAGCTAATAGATG+TGG 0.612393 tig0012398:-1749 Msa1351990:CDS
ATGAGAAACAGTCCAAAACC+AGG 0.613282 tig0012398:+1285 None:intergenic
GGTTGATACAGGAAGATCAT+GGG 0.615733 tig0012398:-1551 Msa1351990:three_prime_UTR
GTGAGGGTAGTCAGATGCAA+GGG 0.623599 tig0012398:-1520 Msa1351990:three_prime_UTR
AGTGAGGGTAGTCAGATGCA+AGG 0.624309 tig0012398:-1521 Msa1351990:three_prime_UTR
ATCATGGGTTAGGAAAGTGA+GGG 0.631123 tig0012398:-1536 Msa1351990:three_prime_UTR
ACTTCACAAAAGTTCAACAA+TGG 0.637959 tig0012398:-3243 Msa1351990:CDS
CTCATATAGCAGAATACTAG+GGG 0.639695 tig0012398:-1267 Msa1351990:three_prime_UTR
AGACAAATCTAGAGAAAGTG+TGG 0.652450 tig0012398:-1836 Msa1351990:CDS
GTACCACAGCATAACAAACA+AGG 0.673323 tig0012398:+1244 None:intergenic
TTGTAAGAAGAATGAACAGG+TGG 0.680203 tig0012398:-1773 Msa1351990:CDS
ATGGAACAAACTGTACACAA+GGG 0.692043 tig0012398:+1455 None:intergenic
CAAATCTAGAGAAAGTGTGG+TGG 0.706572 tig0012398:-1833 Msa1351990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAATATTTATAAATT+GGG - tig0012398:1763-1782 Msa1351990:CDS 0.0%
!!! TTTTTTAATATTTATAAATT+GGG - tig0012398:1763-1782 Msa1351990:CDS 0.0%
!!! TTAATATTTTCTTAAAAATG+GGG + tig0012398:1560-1579 None:intergenic 10.0%
!!! CTTTAATATTTTCTTAAAAA+TGG + tig0012398:1562-1581 None:intergenic 10.0%
!!! TTAATATTTTCTTAAAAATG+GGG + tig0012398:1560-1579 None:intergenic 10.0%
!!! CTTTAATATTTTCTTAAAAA+TGG + tig0012398:1562-1581 None:intergenic 10.0%
!! AATATATTAAAATACATGCA+AGG + tig0012398:1805-1824 None:intergenic 15.0%
!! ATATTTAATAATCTCTCATT+AGG - tig0012398:2296-2315 Msa1351990:CDS 15.0%
!!! ACTATGTTTTATACTATTAT+AGG + tig0012398:2322-2341 None:intergenic 15.0%
!! TGTTATGTAACAATTAAATT+TGG + tig0012398:2529-2548 None:intergenic 15.0%
!! AATGAATTGAACAAAAAAAT+AGG - tig0012398:3007-3026 Msa1351990:CDS 15.0%
!! AATATATTAAAATACATGCA+AGG + tig0012398:1805-1824 None:intergenic 15.0%
!! ATATTTAATAATCTCTCATT+AGG - tig0012398:2296-2315 Msa1351990:CDS 15.0%
!!! ACTATGTTTTATACTATTAT+AGG + tig0012398:2322-2341 None:intergenic 15.0%
!! TGTTATGTAACAATTAAATT+TGG + tig0012398:2529-2548 None:intergenic 15.0%
!! AATGAATTGAACAAAAAAAT+AGG - tig0012398:3007-3026 Msa1351990:CDS 15.0%
!!! TTGTTTTCAATTTTAATTGC+AGG - tig0012398:1826-1845 Msa1351990:CDS 20.0%
!! ATAAAATGTATGGTAACAAA+TGG - tig0012398:1944-1963 Msa1351990:intron 20.0%
!! TAAAATGTATGGTAACAAAT+GGG - tig0012398:1945-1964 Msa1351990:intron 20.0%
!!! TAAAACATAGTTTTAAGTTG+CGG - tig0012398:2331-2350 Msa1351990:CDS 20.0%
!! CACTACAAATATTTATATTG+CGG - tig0012398:2363-2382 Msa1351990:CDS 20.0%
!! AATATAGTTTAGCAAATTTC+CGG + tig0012398:2484-2503 None:intergenic 20.0%
!!! TTTTTACTTTTTGCCTTTTA+TGG + tig0012398:2980-2999 None:intergenic 20.0%
!! ATAATAATTGTATAAACTCC+TGG - tig0012398:3110-3129 Msa1351990:CDS 20.0%
!!! TTGTTTTCAATTTTAATTGC+AGG - tig0012398:1826-1845 Msa1351990:CDS 20.0%
!! ATAAAATGTATGGTAACAAA+TGG - tig0012398:1944-1963 Msa1351990:intron 20.0%
!! TAAAATGTATGGTAACAAAT+GGG - tig0012398:1945-1964 Msa1351990:intron 20.0%
!!! TAAAACATAGTTTTAAGTTG+CGG - tig0012398:2331-2350 Msa1351990:CDS 20.0%
!! CACTACAAATATTTATATTG+CGG - tig0012398:2363-2382 Msa1351990:CDS 20.0%
!! AATATAGTTTAGCAAATTTC+CGG + tig0012398:2484-2503 None:intergenic 20.0%
!!! TTTTTACTTTTTGCCTTTTA+TGG + tig0012398:2980-2999 None:intergenic 20.0%
!! ATAATAATTGTATAAACTCC+TGG - tig0012398:3110-3129 Msa1351990:CDS 20.0%
! TTAAGTTTAGCATCTTCTAT+TGG + tig0012398:1455-1474 None:intergenic 25.0%
! AATAGAAGATGCTAAACTTA+AGG - tig0012398:1454-1473 Msa1351990:three_prime_UTR 25.0%
!!! AGGTTTTTTTGTTGATTCTT+GGG + tig0012398:1888-1907 None:intergenic 25.0%
!!! AAGGTTTTTTTGTTGATTCT+TGG + tig0012398:1889-1908 None:intergenic 25.0%
! CGCAATATAAATATTTGTAG+TGG + tig0012398:2365-2384 None:intergenic 25.0%
! TTTATATTGCGGTAAAATGT+AGG - tig0012398:2374-2393 Msa1351990:CDS 25.0%
! GTAACAATTAAATTTGGACA+TGG + tig0012398:2523-2542 None:intergenic 25.0%
!!! GTGAATTTTGACAAGTATTT+TGG - tig0012398:2614-2633 Msa1351990:intron 25.0%
! AGAGTTTGAATCTGAAAAAT+TGG + tig0012398:2702-2721 None:intergenic 25.0%
! TTAAGTTTAGCATCTTCTAT+TGG + tig0012398:1455-1474 None:intergenic 25.0%
! AATAGAAGATGCTAAACTTA+AGG - tig0012398:1454-1473 Msa1351990:three_prime_UTR 25.0%
!!! AGGTTTTTTTGTTGATTCTT+GGG + tig0012398:1888-1907 None:intergenic 25.0%
!!! AAGGTTTTTTTGTTGATTCT+TGG + tig0012398:1889-1908 None:intergenic 25.0%
! CGCAATATAAATATTTGTAG+TGG + tig0012398:2365-2384 None:intergenic 25.0%
! TTTATATTGCGGTAAAATGT+AGG - tig0012398:2374-2393 Msa1351990:CDS 25.0%
! GTAACAATTAAATTTGGACA+TGG + tig0012398:2523-2542 None:intergenic 25.0%
!!! GTGAATTTTGACAAGTATTT+TGG - tig0012398:2614-2633 Msa1351990:intron 25.0%
! AGAGTTTGAATCTGAAAAAT+TGG + tig0012398:2702-2721 None:intergenic 25.0%
ACTTCACAAAAGTTCAACAA+TGG - tig0012398:1170-1189 Msa1351990:three_prime_UTR 30.0%
! ACAAGATAAGTTGAAGGAAT+AGG + tig0012398:1227-1246 None:intergenic 30.0%
TATTCCTTCAACTTATCTTG+TGG - tig0012398:1226-1245 Msa1351990:three_prime_UTR 30.0%
ACTTTGGACTTAAACATTGA+GGG + tig0012398:1305-1324 None:intergenic 30.0%
TACTTTGGACTTAAACATTG+AGG + tig0012398:1306-1325 None:intergenic 30.0%
TTTAAGTCCAAAGTAGAAGA+TGG - tig0012398:1311-1330 Msa1351990:three_prime_UTR 30.0%
TTAAGTCCAAAGTAGAAGAT+GGG - tig0012398:1312-1331 Msa1351990:three_prime_UTR 30.0%
!! AAAAACCTGTCTTTGAAACT+TGG - tig0012398:1353-1372 Msa1351990:three_prime_UTR 30.0%
! ATTTTCTTAAAAATGGGGTG+AGG + tig0012398:1555-1574 None:intergenic 30.0%
! CAACAAAAAAACCTTTTCTG+AGG - tig0012398:1894-1913 Msa1351990:intron 30.0%
TTAGCTGCTCATAAAATGTA+TGG - tig0012398:1934-1953 Msa1351990:intron 30.0%
!! ATAATTGCTAGACTTTTTCC+AGG - tig0012398:1970-1989 Msa1351990:intron 30.0%
!! TAATTGCTAGACTTTTTCCA+GGG - tig0012398:1971-1990 Msa1351990:intron 30.0%
ATAATGCAGTGAAGAATCAT+TGG - tig0012398:2001-2020 Msa1351990:intron 30.0%
TGTTGTTGAAAGTCTTTCAA+AGG - tig0012398:2086-2105 Msa1351990:intron 30.0%
! ACTAGTTTATCAAACAGTTG+AGG + tig0012398:2228-2247 None:intergenic 30.0%
AAAGCTAAAGCTAATAGATG+TGG - tig0012398:2664-2683 Msa1351990:intron 30.0%
TTGAATCTGAAAAATTGGAC+TGG + tig0012398:2697-2716 None:intergenic 30.0%
AATTGAGATATTGGACCTAT+TGG + tig0012398:2753-2772 None:intergenic 30.0%
TTCACCAGAAATTGAGATAT+TGG + tig0012398:2762-2781 None:intergenic 30.0%
!!! CTACCATTCATTGATTTTCT+TGG - tig0012398:2815-2834 Msa1351990:intron 30.0%
ACTCCAAGAAAATCAATGAA+TGG + tig0012398:2821-2840 None:intergenic 30.0%
!!! TTCATTGATTTTCTTGGAGT+AGG - tig0012398:2821-2840 Msa1351990:intron 30.0%
! TGTACAGTTTGTTCCATAAA+AGG - tig0012398:2964-2983 Msa1351990:CDS 30.0%
! TATGAAAGTGATGATGACTT+AGG - tig0012398:3063-3082 Msa1351990:CDS 30.0%
! ATTGTATAAACTCCTGGTTT+TGG - tig0012398:3116-3135 Msa1351990:CDS 30.0%
TTCTCATATAGCAGAATACT+AGG - tig0012398:3144-3163 Msa1351990:CDS 30.0%
TCTCATATAGCAGAATACTA+GGG - tig0012398:3145-3164 Msa1351990:CDS 30.0%
ACTTCACAAAAGTTCAACAA+TGG - tig0012398:1170-1189 Msa1351990:three_prime_UTR 30.0%
! ACAAGATAAGTTGAAGGAAT+AGG + tig0012398:1227-1246 None:intergenic 30.0%
TATTCCTTCAACTTATCTTG+TGG - tig0012398:1226-1245 Msa1351990:three_prime_UTR 30.0%
ACTTTGGACTTAAACATTGA+GGG + tig0012398:1305-1324 None:intergenic 30.0%
TACTTTGGACTTAAACATTG+AGG + tig0012398:1306-1325 None:intergenic 30.0%
TTTAAGTCCAAAGTAGAAGA+TGG - tig0012398:1311-1330 Msa1351990:three_prime_UTR 30.0%
TTAAGTCCAAAGTAGAAGAT+GGG - tig0012398:1312-1331 Msa1351990:three_prime_UTR 30.0%
!! AAAAACCTGTCTTTGAAACT+TGG - tig0012398:1353-1372 Msa1351990:three_prime_UTR 30.0%
! ATTTTCTTAAAAATGGGGTG+AGG + tig0012398:1555-1574 None:intergenic 30.0%
! CAACAAAAAAACCTTTTCTG+AGG - tig0012398:1894-1913 Msa1351990:intron 30.0%
TTAGCTGCTCATAAAATGTA+TGG - tig0012398:1934-1953 Msa1351990:intron 30.0%
!! ATAATTGCTAGACTTTTTCC+AGG - tig0012398:1970-1989 Msa1351990:intron 30.0%
!! TAATTGCTAGACTTTTTCCA+GGG - tig0012398:1971-1990 Msa1351990:intron 30.0%
ATAATGCAGTGAAGAATCAT+TGG - tig0012398:2001-2020 Msa1351990:intron 30.0%
TGTTGTTGAAAGTCTTTCAA+AGG - tig0012398:2086-2105 Msa1351990:intron 30.0%
! ACTAGTTTATCAAACAGTTG+AGG + tig0012398:2228-2247 None:intergenic 30.0%
AAAGCTAAAGCTAATAGATG+TGG - tig0012398:2664-2683 Msa1351990:intron 30.0%
TTGAATCTGAAAAATTGGAC+TGG + tig0012398:2697-2716 None:intergenic 30.0%
AATTGAGATATTGGACCTAT+TGG + tig0012398:2753-2772 None:intergenic 30.0%
TTCACCAGAAATTGAGATAT+TGG + tig0012398:2762-2781 None:intergenic 30.0%
!!! CTACCATTCATTGATTTTCT+TGG - tig0012398:2815-2834 Msa1351990:intron 30.0%
ACTCCAAGAAAATCAATGAA+TGG + tig0012398:2821-2840 None:intergenic 30.0%
!!! TTCATTGATTTTCTTGGAGT+AGG - tig0012398:2821-2840 Msa1351990:intron 30.0%
! TGTACAGTTTGTTCCATAAA+AGG - tig0012398:2964-2983 Msa1351990:CDS 30.0%
! TATGAAAGTGATGATGACTT+AGG - tig0012398:3063-3082 Msa1351990:CDS 30.0%
! ATTGTATAAACTCCTGGTTT+TGG - tig0012398:3116-3135 Msa1351990:CDS 30.0%
TTCTCATATAGCAGAATACT+AGG - tig0012398:3144-3163 Msa1351990:CDS 30.0%
TCTCATATAGCAGAATACTA+GGG - tig0012398:3145-3164 Msa1351990:CDS 30.0%
! GAATCCACAAGATAAGTTGA+AGG + tig0012398:1233-1252 None:intergenic 35.0%
! AAATCTGAAGACCCTTTTCA+GGG + tig0012398:1277-1296 None:intergenic 35.0%
! AAAATCTGAAGACCCTTTTC+AGG + tig0012398:1278-1297 None:intergenic 35.0%
CATTACCAAGTTTCAAAGAC+AGG + tig0012398:1361-1380 None:intergenic 35.0%
CTGAATATGGTCCTCAAAAT+TGG - tig0012398:1486-1505 Msa1351990:three_prime_UTR 35.0%
! GCAATCAAGTTCCAATTTTG+AGG + tig0012398:1500-1519 None:intergenic 35.0%
TTGATTGCAGAACATCTTGA+AGG - tig0012398:1512-1531 Msa1351990:three_prime_UTR 35.0%
!! TTCTAGAGTAAGTGCATGTT+TGG - tig0012398:1598-1617 Msa1351990:CDS 35.0%
GTAAGTGCATGTTTGGATTT+AGG - tig0012398:1605-1624 Msa1351990:CDS 35.0%
CAGGAAAAAGTTGTAGATTG+AGG - tig0012398:1845-1864 Msa1351990:intron 35.0%
GAAAAAGTTGTAGATTGAGG+TGG - tig0012398:1848-1867 Msa1351990:intron 35.0%
AACAGTGTACTGTGTATAGA+AGG - tig0012398:2052-2071 Msa1351990:intron 35.0%
GAAAGACTTTCAACAACAAC+AGG + tig0012398:2084-2103 None:intergenic 35.0%
AGTTGAGACATTTCCATCAA+TGG + tig0012398:2166-2185 None:intergenic 35.0%
! AATTGTAAATGCGAAGGCAT+CGG + tig0012398:2408-2427 None:intergenic 35.0%
CATCACAATTGTAAATGCGA+AGG + tig0012398:2414-2433 None:intergenic 35.0%
AGACAAATCTAGAGAAAGTG+TGG - tig0012398:2577-2596 Msa1351990:intron 35.0%
AGCTTGTAAGAAGAATGAAC+AGG - tig0012398:2637-2656 Msa1351990:intron 35.0%
TTGTAAGAAGAATGAACAGG+TGG - tig0012398:2640-2659 Msa1351990:intron 35.0%
AGGTCCAATATCTCAATTTC+TGG - tig0012398:2755-2774 Msa1351990:intron 35.0%
TCTGGTGAAAGTGAAAATGT+TGG - tig0012398:2773-2792 Msa1351990:intron 35.0%
AGGAGCTATACAAAGCTAAA+TGG - tig0012398:2841-2860 Msa1351990:intron 35.0%
! CAAAGCTAAATGGTTGATAC+AGG - tig0012398:2851-2870 Msa1351990:intron 35.0%
! TCATTTTCACCCAACACAAA+CGG + tig0012398:2921-2940 None:intergenic 35.0%
ATGGAACAAACTGTACACAA+GGG + tig0012398:2961-2980 None:intergenic 35.0%
TATGGAACAAACTGTACACA+AGG + tig0012398:2962-2981 None:intergenic 35.0%
CTCATATAGCAGAATACTAG+GGG - tig0012398:3146-3165 Msa1351990:CDS 35.0%
! TTGTTATGCTGTGGTACTTT+TGG - tig0012398:3175-3194 Msa1351990:CDS 35.0%
!! GAAGCCAAAGTTTTATGACT+TGG - tig0012398:3212-3231 Msa1351990:CDS 35.0%
CCATCCAAGTCATAAAACTT+TGG + tig0012398:3219-3238 None:intergenic 35.0%
!! CCAAAGTTTTATGACTTGGA+TGG - tig0012398:3216-3235 Msa1351990:CDS 35.0%
!! AGTTTTATGACTTGGATGGA+TGG - tig0012398:3220-3239 Msa1351990:CDS 35.0%
! GAATCCACAAGATAAGTTGA+AGG + tig0012398:1233-1252 None:intergenic 35.0%
! AAATCTGAAGACCCTTTTCA+GGG + tig0012398:1277-1296 None:intergenic 35.0%
! AAAATCTGAAGACCCTTTTC+AGG + tig0012398:1278-1297 None:intergenic 35.0%
CATTACCAAGTTTCAAAGAC+AGG + tig0012398:1361-1380 None:intergenic 35.0%
CTGAATATGGTCCTCAAAAT+TGG - tig0012398:1486-1505 Msa1351990:three_prime_UTR 35.0%
! GCAATCAAGTTCCAATTTTG+AGG + tig0012398:1500-1519 None:intergenic 35.0%
TTGATTGCAGAACATCTTGA+AGG - tig0012398:1512-1531 Msa1351990:three_prime_UTR 35.0%
!! TTCTAGAGTAAGTGCATGTT+TGG - tig0012398:1598-1617 Msa1351990:CDS 35.0%
GTAAGTGCATGTTTGGATTT+AGG - tig0012398:1605-1624 Msa1351990:CDS 35.0%
CAGGAAAAAGTTGTAGATTG+AGG - tig0012398:1845-1864 Msa1351990:intron 35.0%
GAAAAAGTTGTAGATTGAGG+TGG - tig0012398:1848-1867 Msa1351990:intron 35.0%
AACAGTGTACTGTGTATAGA+AGG - tig0012398:2052-2071 Msa1351990:intron 35.0%
GAAAGACTTTCAACAACAAC+AGG + tig0012398:2084-2103 None:intergenic 35.0%
AGTTGAGACATTTCCATCAA+TGG + tig0012398:2166-2185 None:intergenic 35.0%
! AATTGTAAATGCGAAGGCAT+CGG + tig0012398:2408-2427 None:intergenic 35.0%
CATCACAATTGTAAATGCGA+AGG + tig0012398:2414-2433 None:intergenic 35.0%
AGACAAATCTAGAGAAAGTG+TGG - tig0012398:2577-2596 Msa1351990:intron 35.0%
AGCTTGTAAGAAGAATGAAC+AGG - tig0012398:2637-2656 Msa1351990:intron 35.0%
TTGTAAGAAGAATGAACAGG+TGG - tig0012398:2640-2659 Msa1351990:intron 35.0%
AGGTCCAATATCTCAATTTC+TGG - tig0012398:2755-2774 Msa1351990:intron 35.0%
TCTGGTGAAAGTGAAAATGT+TGG - tig0012398:2773-2792 Msa1351990:intron 35.0%
AGGAGCTATACAAAGCTAAA+TGG - tig0012398:2841-2860 Msa1351990:intron 35.0%
! CAAAGCTAAATGGTTGATAC+AGG - tig0012398:2851-2870 Msa1351990:intron 35.0%
! TCATTTTCACCCAACACAAA+CGG + tig0012398:2921-2940 None:intergenic 35.0%
ATGGAACAAACTGTACACAA+GGG + tig0012398:2961-2980 None:intergenic 35.0%
TATGGAACAAACTGTACACA+AGG + tig0012398:2962-2981 None:intergenic 35.0%
CTCATATAGCAGAATACTAG+GGG - tig0012398:3146-3165 Msa1351990:CDS 35.0%
! TTGTTATGCTGTGGTACTTT+TGG - tig0012398:3175-3194 Msa1351990:CDS 35.0%
!! GAAGCCAAAGTTTTATGACT+TGG - tig0012398:3212-3231 Msa1351990:CDS 35.0%
CCATCCAAGTCATAAAACTT+TGG + tig0012398:3219-3238 None:intergenic 35.0%
!! CCAAAGTTTTATGACTTGGA+TGG - tig0012398:3216-3235 Msa1351990:CDS 35.0%
!! AGTTTTATGACTTGGATGGA+TGG - tig0012398:3220-3239 Msa1351990:CDS 35.0%
GTTGAAGGAATAGGAGCTAA+AGG + tig0012398:1218-1237 None:intergenic 40.0%
GTTTGTCAAAGGAAGAGCTT+TGG + tig0012398:1255-1274 None:intergenic 40.0%
TCCTTTGACAAACCCTGAAA+AGG - tig0012398:1262-1281 Msa1351990:three_prime_UTR 40.0%
CCTTTGACAAACCCTGAAAA+GGG - tig0012398:1263-1282 Msa1351990:three_prime_UTR 40.0%
! AAAGCACCCATCTTCTACTT+TGG + tig0012398:1321-1340 None:intergenic 40.0%
!! AGCTCTGTTTCTGTGAAAGT+TGG - tig0012398:1395-1414 Msa1351990:three_prime_UTR 40.0%
!! TACTCCAAGCTTTGTTCTAG+AGG - tig0012398:1419-1438 Msa1351990:three_prime_UTR 40.0%
!! ATGACCTCTAGAACAAAGCT+TGG + tig0012398:1426-1445 None:intergenic 40.0%
!! AGCTTTGTTCTAGAGGTCAT+TGG - tig0012398:1426-1445 Msa1351990:three_prime_UTR 40.0%
!! AAGGAGCTTGTTGCTGAATA+TGG - tig0012398:1473-1492 Msa1351990:three_prime_UTR 40.0%
GAACATCTTGAAGGAAGATC+AGG - tig0012398:1521-1540 Msa1351990:three_prime_UTR 40.0%
TCATCACTTTGTGACACAAC+AGG + tig0012398:1647-1666 None:intergenic 40.0%
CTCTTCTTCTTCCTCAGAAA+AGG + tig0012398:1908-1927 None:intergenic 40.0%
GAATCATTGGCATGTGATCA+TGG - tig0012398:2014-2033 Msa1351990:intron 40.0%
TGATCATGGCTAGAAGACAT+AGG - tig0012398:2028-2047 Msa1351990:intron 40.0%
GATCATGGCTAGAAGACATA+GGG - tig0012398:2029-2048 Msa1351990:intron 40.0%
ACTATCTCAAGCACCATTGA+TGG - tig0012398:2150-2169 Msa1351990:CDS 40.0%
TGAGGACTTAGTTTAGCTGA+AGG + tig0012398:2210-2229 None:intergenic 40.0%
TCAAGGCTATGGATCACTAA+TGG - tig0012398:2266-2285 Msa1351990:CDS 40.0%
CAAGGCTATGGATCACTAAT+GGG - tig0012398:2267-2286 Msa1351990:CDS 40.0%
TGCGGTAAAATGTAGGCAAA+TGG - tig0012398:2381-2400 Msa1351990:CDS 40.0%
GCGGTAAAATGTAGGCAAAT+GGG - tig0012398:2382-2401 Msa1351990:CDS 40.0%
! GTATGTTTAGAATCACGACG+AGG - tig0012398:2454-2473 Msa1351990:CDS 40.0%
! CAAATCTAGAGAAAGTGTGG+TGG - tig0012398:2580-2599 Msa1351990:intron 40.0%
GCTAAAGCTAATAGATGTGG+TGG - tig0012398:2667-2686 Msa1351990:intron 40.0%
AAAGCTAATAGATGTGGTGG+TGG - tig0012398:2670-2689 Msa1351990:intron 40.0%
TGAGATATTGGACCTATTGG+TGG + tig0012398:2750-2769 None:intergenic 40.0%
! TGGTTGATACAGGAAGATCA+TGG - tig0012398:2861-2880 Msa1351990:intron 40.0%
! GGTTGATACAGGAAGATCAT+GGG - tig0012398:2862-2881 Msa1351990:intron 40.0%
ATACAGGAAGATCATGGGTT+AGG - tig0012398:2867-2886 Msa1351990:intron 40.0%
!! ATCATGGGTTAGGAAAGTGA+GGG - tig0012398:2877-2896 Msa1351990:intron 40.0%
ATGAGAAACAGTCCAAAACC+AGG + tig0012398:3131-3150 None:intergenic 40.0%
GTACCACAGCATAACAAACA+AGG + tig0012398:3172-3191 None:intergenic 40.0%
GTTGAAGGAATAGGAGCTAA+AGG + tig0012398:1218-1237 None:intergenic 40.0%
GTTTGTCAAAGGAAGAGCTT+TGG + tig0012398:1255-1274 None:intergenic 40.0%
TCCTTTGACAAACCCTGAAA+AGG - tig0012398:1262-1281 Msa1351990:three_prime_UTR 40.0%
CCTTTGACAAACCCTGAAAA+GGG - tig0012398:1263-1282 Msa1351990:three_prime_UTR 40.0%
! AAAGCACCCATCTTCTACTT+TGG + tig0012398:1321-1340 None:intergenic 40.0%
!! AGCTCTGTTTCTGTGAAAGT+TGG - tig0012398:1395-1414 Msa1351990:three_prime_UTR 40.0%
!! TACTCCAAGCTTTGTTCTAG+AGG - tig0012398:1419-1438 Msa1351990:three_prime_UTR 40.0%
!! ATGACCTCTAGAACAAAGCT+TGG + tig0012398:1426-1445 None:intergenic 40.0%
!! AGCTTTGTTCTAGAGGTCAT+TGG - tig0012398:1426-1445 Msa1351990:three_prime_UTR 40.0%
!! AAGGAGCTTGTTGCTGAATA+TGG - tig0012398:1473-1492 Msa1351990:three_prime_UTR 40.0%
GAACATCTTGAAGGAAGATC+AGG - tig0012398:1521-1540 Msa1351990:three_prime_UTR 40.0%
TCATCACTTTGTGACACAAC+AGG + tig0012398:1647-1666 None:intergenic 40.0%
CTCTTCTTCTTCCTCAGAAA+AGG + tig0012398:1908-1927 None:intergenic 40.0%
GAATCATTGGCATGTGATCA+TGG - tig0012398:2014-2033 Msa1351990:intron 40.0%
TGATCATGGCTAGAAGACAT+AGG - tig0012398:2028-2047 Msa1351990:intron 40.0%
GATCATGGCTAGAAGACATA+GGG - tig0012398:2029-2048 Msa1351990:intron 40.0%
ACTATCTCAAGCACCATTGA+TGG - tig0012398:2150-2169 Msa1351990:CDS 40.0%
TGAGGACTTAGTTTAGCTGA+AGG + tig0012398:2210-2229 None:intergenic 40.0%
TCAAGGCTATGGATCACTAA+TGG - tig0012398:2266-2285 Msa1351990:CDS 40.0%
CAAGGCTATGGATCACTAAT+GGG - tig0012398:2267-2286 Msa1351990:CDS 40.0%
TGCGGTAAAATGTAGGCAAA+TGG - tig0012398:2381-2400 Msa1351990:CDS 40.0%
GCGGTAAAATGTAGGCAAAT+GGG - tig0012398:2382-2401 Msa1351990:CDS 40.0%
! GTATGTTTAGAATCACGACG+AGG - tig0012398:2454-2473 Msa1351990:CDS 40.0%
! CAAATCTAGAGAAAGTGTGG+TGG - tig0012398:2580-2599 Msa1351990:intron 40.0%
GCTAAAGCTAATAGATGTGG+TGG - tig0012398:2667-2686 Msa1351990:intron 40.0%
AAAGCTAATAGATGTGGTGG+TGG - tig0012398:2670-2689 Msa1351990:intron 40.0%
TGAGATATTGGACCTATTGG+TGG + tig0012398:2750-2769 None:intergenic 40.0%
! TGGTTGATACAGGAAGATCA+TGG - tig0012398:2861-2880 Msa1351990:intron 40.0%
! GGTTGATACAGGAAGATCAT+GGG - tig0012398:2862-2881 Msa1351990:intron 40.0%
ATACAGGAAGATCATGGGTT+AGG - tig0012398:2867-2886 Msa1351990:intron 40.0%
!! ATCATGGGTTAGGAAAGTGA+GGG - tig0012398:2877-2896 Msa1351990:intron 40.0%
ATGAGAAACAGTCCAAAACC+AGG + tig0012398:3131-3150 None:intergenic 40.0%
GTACCACAGCATAACAAACA+AGG + tig0012398:3172-3191 None:intergenic 40.0%
!! CCCTTTTCAGGGTTTGTCAA+AGG + tig0012398:1266-1285 None:intergenic 45.0%
AGTAGAAGATGGGTGCTTTG+AGG - tig0012398:1322-1341 Msa1351990:three_prime_UTR 45.0%
!! TTGCTAGACTTTTTCCAGGG+AGG - tig0012398:1974-1993 Msa1351990:intron 45.0%
AGGAGTGAGTGAGAGATTAG+TGG + tig0012398:2190-2209 None:intergenic 45.0%
! AGAAAGTGTGGTGGCAACTA+GGG - tig0012398:2589-2608 Msa1351990:intron 45.0%
CTGAGTCAGTTACCACCAAT+AGG - tig0012398:2735-2754 Msa1351990:intron 45.0%
!! GATCATGGGTTAGGAAAGTG+AGG - tig0012398:2876-2895 Msa1351990:intron 45.0%
!! CCCTTTTCAGGGTTTGTCAA+AGG + tig0012398:1266-1285 None:intergenic 45.0%
AGTAGAAGATGGGTGCTTTG+AGG - tig0012398:1322-1341 Msa1351990:three_prime_UTR 45.0%
!! TTGCTAGACTTTTTCCAGGG+AGG - tig0012398:1974-1993 Msa1351990:intron 45.0%
AGGAGTGAGTGAGAGATTAG+TGG + tig0012398:2190-2209 None:intergenic 45.0%
! AGAAAGTGTGGTGGCAACTA+GGG - tig0012398:2589-2608 Msa1351990:intron 45.0%
CTGAGTCAGTTACCACCAAT+AGG - tig0012398:2735-2754 Msa1351990:intron 45.0%
!! GATCATGGGTTAGGAAAGTG+AGG - tig0012398:2876-2895 Msa1351990:intron 45.0%
!!! TTTAATATTTTCTTAAAAAT+GGG + tig0012398:1561-1580 None:intergenic 5.0%
!!! CTTTTTTAATATTTATAAAT+TGG - tig0012398:1762-1781 Msa1351990:CDS 5.0%
!!! TTTTTAATATTTATAAATTG+GGG - tig0012398:1764-1783 Msa1351990:CDS 5.0%
!!! TTTAATATTTTCTTAAAAAT+GGG + tig0012398:1561-1580 None:intergenic 5.0%
!!! CTTTTTTAATATTTATAAAT+TGG - tig0012398:1762-1781 Msa1351990:CDS 5.0%
!!! TTTTTAATATTTATAAATTG+GGG - tig0012398:1764-1783 Msa1351990:CDS 5.0%
!! GATGGGTGCTTTGAGGTTCA+AGG - tig0012398:1329-1348 Msa1351990:three_prime_UTR 50.0%
ACTGCATTATCTGTCCTCCC+TGG + tig0012398:1991-2010 None:intergenic 50.0%
GTTCCAGTCGAGAGTCATCA+AGG - tig0012398:2249-2268 Msa1351990:CDS 50.0%
! TAGCCTTGATGACTCTCGAC+TGG + tig0012398:2255-2274 None:intergenic 50.0%
GTCGAGAGTCATCAAGGCTA+TGG - tig0012398:2255-2274 Msa1351990:CDS 50.0%
AGAATCACGACGAGGTTCAC+CGG - tig0012398:2462-2481 Msa1351990:CDS 50.0%
! GAGAAAGTGTGGTGGCAACT+AGG - tig0012398:2588-2607 Msa1351990:intron 50.0%
AGTGAGGGTAGTCAGATGCA+AGG - tig0012398:2892-2911 Msa1351990:intron 50.0%
GTGAGGGTAGTCAGATGCAA+GGG - tig0012398:2893-2912 Msa1351990:CDS 50.0%
TGCAAGGGAACCGTTTGTGT+TGG - tig0012398:2908-2927 Msa1351990:CDS 50.0%
GCAAGGGAACCGTTTGTGTT+GGG - tig0012398:2909-2928 Msa1351990:CDS 50.0%
!! GGGCCTTGTTTGTTATGCTG+TGG - tig0012398:3166-3185 Msa1351990:CDS 50.0%
!! GATGGGTGCTTTGAGGTTCA+AGG - tig0012398:1329-1348 Msa1351990:three_prime_UTR 50.0%
ACTGCATTATCTGTCCTCCC+TGG + tig0012398:1991-2010 None:intergenic 50.0%
GTTCCAGTCGAGAGTCATCA+AGG - tig0012398:2249-2268 Msa1351990:CDS 50.0%
! TAGCCTTGATGACTCTCGAC+TGG + tig0012398:2255-2274 None:intergenic 50.0%
GTCGAGAGTCATCAAGGCTA+TGG - tig0012398:2255-2274 Msa1351990:CDS 50.0%
AGAATCACGACGAGGTTCAC+CGG - tig0012398:2462-2481 Msa1351990:CDS 50.0%
! GAGAAAGTGTGGTGGCAACT+AGG - tig0012398:2588-2607 Msa1351990:intron 50.0%
AGTGAGGGTAGTCAGATGCA+AGG - tig0012398:2892-2911 Msa1351990:intron 50.0%
GTGAGGGTAGTCAGATGCAA+GGG - tig0012398:2893-2912 Msa1351990:CDS 50.0%
TGCAAGGGAACCGTTTGTGT+TGG - tig0012398:2908-2927 Msa1351990:CDS 50.0%
GCAAGGGAACCGTTTGTGTT+GGG - tig0012398:2909-2928 Msa1351990:CDS 50.0%
!! GGGCCTTGTTTGTTATGCTG+TGG - tig0012398:3166-3185 Msa1351990:CDS 50.0%
Chromosome Type Strat End Strand Name
tig0012398 gene 1167 3268 1167 ID=Msa1351990;Name=Msa1351990
tig0012398 mRNA 1167 3268 1167 ID=Msa1351990-mRNA-1;Parent=Msa1351990;Name=Msa1351990-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.33|1|1|1|3|409|365
tig0012398 exon 1167 1856 1167 ID=Msa1351990-mRNA-1:exon:7970;Parent=Msa1351990-mRNA-1
tig0012398 exon 2147 2587 2147 ID=Msa1351990-mRNA-1:exon:7969;Parent=Msa1351990-mRNA-1
tig0012398 exon 2893 3268 2893 ID=Msa1351990-mRNA-1:exon:7968;Parent=Msa1351990-mRNA-1
tig0012398 CDS 2893 3268 2893 ID=Msa1351990-mRNA-1:cds;Parent=Msa1351990-mRNA-1
tig0012398 CDS 2147 2587 2147 ID=Msa1351990-mRNA-1:cds;Parent=Msa1351990-mRNA-1
tig0012398 CDS 1576 1856 1576 ID=Msa1351990-mRNA-1:cds;Parent=Msa1351990-mRNA-1
tig0012398 three_prime_UTR 1167 1575 1167 ID=Msa1351990-mRNA-1:three_prime_utr;Parent=Msa1351990-mRNA-1
Gene Sequence

>Msa1351990

ATGACTTCACAAAAGTTCAACAATGGTGATATCAATATGAGTCTTTTTCCTTTAGCTCCTATTCCTTCAACTTATCTTGTGGATTCCAAAGCTCTTCCTTTGACAAACCCTGAAAAGGGTCTTCAGATTTTGAGACCCTCAATGTTTAAGTCCAAAGTAGAAGATGGGTGCTTTGAGGTTCAAGGAAAAAACCTGTCTTTGAAACTTGGTAATGAAGTAGAAGATAAAAGCTCTGTTTCTGTGAAAGTTGGATACTCCAAGCTTTGTTCTAGAGGTCATTGGAGACCAATAGAAGATGCTAAACTTAAGGAGCTTGTTGCTGAATATGGTCCTCAAAATTGGAACTTGATTGCAGAACATCTTGAAGGAAGATCAGGAAAAAGTTGTAGATTGAGGTGGTTCAATCAGTTAGACCCAAGAATCAACAAAAAAACCTTTTCTGAGGAAGAAGAAGAGAGACTTTTAGCTGCTCATAAAATGTATGGTAACAAATGGGCTATAATTGCTAGACTTTTTCCAGGGAGGACAGATAATGCAGTGAAGAATCATTGGCATGTGATCATGGCTAGAAGACATAGGGAACAGTGTACTGTGTATAGAAGGAGAAAGCCTGTTGTTGTTGAAAGTCTTTCAAAGGATTTAAAATTAAGTCTTTCAAACAATGCAGCTAGTGATTCAACTATCTCAAGCACCATTGATGGAAATGTCTCAACTTCCACTAATCTCTCACTCACTCCTTCAGCTAAACTAAGTCCTCAACTGTTTGATAAACTAGTTGTTCCAGTCGAGAGTCATCAAGGCTATGGATCACTAATGGACAAATCTAGAGAAAGTGTGGTGGCAACTAGGGATGTGAATTTTGACAAGTATTTTGGAGCTTGTAAGAAGAATGAACAGGTGGAAAAGCTAAAGCTAATAGATGTGGTGGTGGACCAGTCCAATTTTTCAGATTCAAACTCTGAAGTATCAGTATCTGAGTCAGTTACCACCAATAGGTCCAATATCTCAATTTCTGGTGAAAGTGAAAATGTTGGTGTTAAGATTAACATGTTACTACCATTCATTGATTTTCTTGGAGTAGGAGCTATACAAAGCTAA

Protein sequence

>Msa1351990

MTSQKFNNGDINMSLFPLAPIPSTYLVDSKALPLTNPEKGLQILRPSMFKSKVEDGCFEVQGKNLSLKLGNEVEDKSSVSVKVGYSKLCSRGHWRPIEDAKLKELVAEYGPQNWNLIAEHLEGRSGKSCRLRWFNQLDPRINKKTFSEEEEERLLAAHKMYGNKWAIIARLFPGRTDNAVKNHWHVIMARRHREQCTVYRRRKPVVVESLSKDLKLSLSNNAASDSTISSTIDGNVSTSTNLSLTPSAKLSPQLFDKLVVPVESHQGYGSLMDKSRESVVATRDVNFDKYFGACKKNEQVEKLKLIDVVVDQSNFSDSNSEVSVSESVTTNRSNISISGESENVGVKINMLLPFIDFLGVGAIQS*